AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021900.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021900.01.T01 MTR_4g078525 82.313 294 27 3 1 271 1 292 8.00e-156 447
MsG0480021900.01.T01 MTR_5g077340 84.615 39 6 0 179 217 23 61 3.29e-17 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021900.01.T01 AT2G20650 58.364 269 87 5 26 271 7 273 5.84e-102 309
MsG0480021900.01.T01 AT2G20650 58.364 269 87 5 26 271 7 273 5.84e-102 309
MsG0480021900.01.T01 AT4G28370 56.818 264 89 5 31 271 15 276 6.49e-97 296
MsG0480021900.01.T01 AT4G28370 56.818 264 89 5 31 271 15 276 6.49e-97 296
MsG0480021900.01.T01 AT4G28370 56.818 264 89 5 31 271 15 276 6.49e-97 296
MsG0480021900.01.T01 AT4G28370 56.818 264 89 5 31 271 15 276 6.49e-97 296

Find 76 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATATTCCATTGTGAAAA+TGG 0.178125 4:-65782377 None:intergenic
TCTTAATCCATTTCCCTTGA+TGG 0.258105 4:+65781150 MsG0480021900.01.T01:five_prime_UTR
AATGCAACATCTATTAATAT+TGG 0.258636 4:+65784361 MsG0480021900.01.T01:CDS
TTGGAATCAGCTAATTGAAT+TGG 0.290272 4:+65781189 MsG0480021900.01.T01:five_prime_UTR
ACCATTCGAAGTTGTCTAAA+AGG 0.305278 4:-65783509 None:intergenic
GGTTTATTTGGGGTTTGATA+TGG 0.319781 4:+65781247 MsG0480021900.01.T01:CDS
CAGCTAATTGAATTGGGAAC+TGG 0.333345 4:+65781196 MsG0480021900.01.T01:five_prime_UTR
TCAAAGGTTGGAACTTTGTT+TGG 0.339281 4:+65781283 MsG0480021900.01.T01:CDS
TGGTTGGTCTCAGACCATTA+AGG 0.343879 4:+65781381 MsG0480021900.01.T01:CDS
AGATGCAATACCAGATGATA+TGG 0.346387 4:-65783736 None:intergenic
GAGGACTGTGTTTGGTTTGT+TGG 0.349618 4:+65781334 MsG0480021900.01.T01:CDS
TTTGCAAGTCATGCTGGCTT+TGG 0.352404 4:-65780855 None:intergenic
TGGAACTTTGTTTGGTTAAG+AGG 0.359266 4:+65781291 MsG0480021900.01.T01:CDS
AAATAGAAGGTGTATATATA+TGG 0.361668 4:+65783486 MsG0480021900.01.T01:CDS
TTCCAGTAGTTGACGAGGTT+TGG 0.374390 4:-65780891 None:intergenic
TTGGTTAAGAGGAAGAAATT+TGG 0.381351 4:+65781302 MsG0480021900.01.T01:CDS
CTTAATCCATTTCCCTTGAT+GGG 0.391286 4:+65781151 MsG0480021900.01.T01:five_prime_UTR
TCAAAACCCATCAAGGGAAA+TGG 0.392982 4:-65781157 None:intergenic
CACCAAACCTCGTCAACTAC+TGG 0.400859 4:+65780889 MsG0480021900.01.T01:five_prime_UTR
GATGTTGCATTTAATTGTAA+TGG 0.416088 4:-65784349 None:intergenic
TGGAATCAGCTAATTGAATT+GGG 0.420515 4:+65781190 MsG0480021900.01.T01:five_prime_UTR
AAATGGATTAAGAAAACAAA+AGG 0.427880 4:-65781140 None:intergenic
CAATGGCTCTTATAAATATC+CGG 0.433438 4:+65783027 MsG0480021900.01.T01:CDS
TCGACAACGAATACAATGTT+GGG 0.440483 4:+65783450 MsG0480021900.01.T01:CDS
AGTACACCCACAAAGATAAC+TGG 0.442208 4:+65783091 MsG0480021900.01.T01:CDS
CGCAGCTCCATTGCATGGCA+TGG 0.453367 4:+65784089 MsG0480021900.01.T01:intron
TTTATCCAATCCATATCATC+TGG 0.453904 4:+65783726 MsG0480021900.01.T01:CDS
GGTTGGTCTCAGACCATTAA+GGG 0.456895 4:+65781382 MsG0480021900.01.T01:CDS
CTCTCCGCAGCTCCATTGCA+TGG 0.461451 4:+65784084 MsG0480021900.01.T01:intron
GTGTTGTTTGCAAGTCATGC+TGG 0.463794 4:-65780861 None:intergenic
ATAAAATTCAAAACCCATCA+AGG 0.472808 4:-65781164 None:intergenic
GGTGCCCAAATCAAAATAGA+AGG 0.476304 4:+65783473 MsG0480021900.01.T01:CDS
AGCAGTGAACTATACCTTGA+TGG 0.476566 4:+65784399 MsG0480021900.01.T01:CDS
AGTTAAGAGAATATTGATGA+TGG 0.485950 4:-65784438 None:intergenic
TTTGGGGTTTGATATGGTTG+AGG 0.487855 4:+65781253 MsG0480021900.01.T01:CDS
AGACCATTAAGGGATAAAAC+TGG 0.488648 4:+65781392 MsG0480021900.01.T01:CDS
CGGATATTTATAAGAGCCAT+TGG 0.490567 4:-65783026 None:intergenic
CAATACCAGATGATATGGAT+TGG 0.498457 4:-65783731 None:intergenic
GAGGGAGGGTTGAATCAAGA+TGG 0.501959 4:+65783694 MsG0480021900.01.T01:CDS
TGTACACCAGTTATCTTTGT+GGG 0.502285 4:-65783097 None:intergenic
ATGTACACCAGTTATCTTTG+TGG 0.511877 4:-65783098 None:intergenic
TTCGACAACGAATACAATGT+TGG 0.512598 4:+65783449 MsG0480021900.01.T01:CDS
AGCTAATTGAATTGGGAACT+GGG 0.513873 4:+65781197 MsG0480021900.01.T01:five_prime_UTR
AACTTCGAATGGTAGCCAAC+AGG 0.513880 4:+65783519 MsG0480021900.01.T01:CDS
AACTGGTTCGTGGGGTGATG+AGG 0.515337 4:+65781409 MsG0480021900.01.T01:CDS
AAGGGATAAAACTGGTTCGT+GGG 0.528677 4:+65781400 MsG0480021900.01.T01:CDS
TGAGGTTGAAGCTCAAAGGT+TGG 0.542993 4:+65781271 MsG0480021900.01.T01:CDS
GGAAAAGATGAAAGCGACAT+AGG 0.545326 4:+65782353 MsG0480021900.01.T01:CDS
TCTCCTTGAATGCAGGGACG+TGG 0.545387 4:+65782988 MsG0480021900.01.T01:intron
TAACTGGAACTTACAGAGGT+TGG 0.548373 4:+65782396 MsG0480021900.01.T01:CDS
TCTGTTGTTTCTTAGTCCTG+TGG 0.556711 4:+65781361 MsG0480021900.01.T01:CDS
TTTCAGACATGGTTTATTTG+GGG 0.558043 4:+65781237 MsG0480021900.01.T01:exon
TTGTTTCTTAGTCCTGTGGT+TGG 0.561209 4:+65781365 MsG0480021900.01.T01:CDS
AAGAGAATATTGATGATGGA+AGG 0.562302 4:-65784434 None:intergenic
CGCTTGTCATCGTCAAAACA+TGG 0.564678 4:+65784150 MsG0480021900.01.T01:CDS
AATGGATTAAGAAAACAAAA+GGG 0.564697 4:-65781139 None:intergenic
TAAGGGATAAAACTGGTTCG+TGG 0.568320 4:+65781399 MsG0480021900.01.T01:CDS
TAACGTTGAAATTTCAGCAC+GGG 0.570846 4:+65784122 MsG0480021900.01.T01:CDS
TGGTTGAGGTTGAAGCTCAA+AGG 0.571090 4:+65781267 MsG0480021900.01.T01:CDS
TAACACAGAGACAATAATGT+TGG 0.571850 4:-65784466 None:intergenic
CGAAATTGGCTTCAACAGCA+AGG 0.580902 4:-65781032 None:intergenic
GGATACAAAGGTAACCATCA+AGG 0.583380 4:-65784413 None:intergenic
TAAAATTCAAAACCCATCAA+GGG 0.599989 4:-65781163 None:intergenic
TTGATGATGGAAGGATACAA+AGG 0.603886 4:-65784425 None:intergenic
CGACAACGAATACAATGTTG+GGG 0.606610 4:+65783451 MsG0480021900.01.T01:CDS
ATTAATGGAAAGTCCGTCTG+TGG 0.611025 4:+65784303 MsG0480021900.01.T01:CDS
ATTCGTTGTCGAACACATCG+TGG 0.612756 4:-65783439 None:intergenic
AGTCCGTCTGTGGATGACGA+TGG 0.615922 4:+65784313 MsG0480021900.01.T01:CDS
AACTGGTGTACATTATGTGC+AGG 0.617157 4:+65783108 MsG0480021900.01.T01:CDS
TCACTGTCTTGTGACTCGAG+TGG 0.648855 4:+65781078 MsG0480021900.01.T01:five_prime_UTR
AGGGATAAAACTGGTTCGTG+GGG 0.657670 4:+65781401 MsG0480021900.01.T01:CDS
TCTCCATCGTCATCCACAGA+CGG 0.662192 4:-65784316 None:intergenic
AATATAACTGGAACTTACAG+AGG 0.666924 4:+65782392 MsG0480021900.01.T01:CDS
GTAACGTTGAAATTTCAGCA+CGG 0.682539 4:+65784121 MsG0480021900.01.T01:CDS
AATGGTCTGAGACCAACCAC+AGG 0.684216 4:-65781377 None:intergenic
GACAACGAATACAATGTTGG+GGG 0.738098 4:+65783452 MsG0480021900.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGGATTTATATTTAAA+TGG + Chr4:65784198-65784217 MsG0480021900.01.T01:intron 10.0%
!!! AAAAGATTAAATTTTTTTGA+TGG - Chr4:65780949-65780968 None:intergenic 10.0%
!! CACAACTAAAAAAAAAAAAA+CGG - Chr4:65782069-65782088 None:intergenic 15.0%
!!! AAAAGAAAATTAGATCTTTT+AGG + Chr4:65782145-65782164 MsG0480021900.01.T01:intron 15.0%
!!! ATTAAATTTTTTTGATGGAT+AGG - Chr4:65780944-65780963 None:intergenic 15.0%
!! AAAAACAAAAAATGGAATTG+TGG - Chr4:65780920-65780939 None:intergenic 20.0%
!! AAAACAAAAAATGGAATTGT+GGG - Chr4:65780919-65780938 None:intergenic 20.0%
!! AAAATGTACTTAGATGTATT+TGG + Chr4:65781888-65781907 MsG0480021900.01.T01:intron 20.0%
!! AACAAATAATAAAGCAAAAC+AGG - Chr4:65783196-65783215 None:intergenic 20.0%
!! AATGCAACATCTATTAATAT+TGG + Chr4:65784361-65784380 MsG0480021900.01.T01:CDS 20.0%
!! ATGATTTAATGTCTTATAAG+GGG + Chr4:65782561-65782580 MsG0480021900.01.T01:intron 20.0%
!! CAGATTAGAATAATATCAAT+AGG + Chr4:65781753-65781772 MsG0480021900.01.T01:intron 20.0%
!! CATGATTTAATGTCTTATAA+GGG + Chr4:65782560-65782579 MsG0480021900.01.T01:intron 20.0%
!! TAGAATAAAACAAAACAATG+TGG + Chr4:65781701-65781720 MsG0480021900.01.T01:intron 20.0%
!! TTAAACACTTTCTTATAGAT+GGG + Chr4:65784254-65784273 MsG0480021900.01.T01:intron 20.0%
!! TTTACAATTGAAGTAGAAAT+AGG + Chr4:65783614-65783633 MsG0480021900.01.T01:intron 20.0%
!!! AAATAGAAGGTGTATATATA+TGG + Chr4:65783486-65783505 MsG0480021900.01.T01:CDS 20.0%
!!! AAATGGATTAAGAAAACAAA+AGG - Chr4:65781143-65781162 None:intergenic 20.0%
!!! AATGGATTAAGAAAACAAAA+GGG - Chr4:65781142-65781161 None:intergenic 20.0%
!!! ACTTTGTTCAATAAGTTTTT+TGG + Chr4:65782927-65782946 MsG0480021900.01.T01:intron 20.0%
!!! TAAGAAAGTGTTTAACAAAT+TGG - Chr4:65784249-65784268 None:intergenic 20.0%
!!! TCTAATTTTCTTTTCATTTG+TGG - Chr4:65782139-65782158 None:intergenic 20.0%
!!! TCTTTTTCATGTTTTTATCA+GGG + Chr4:65783404-65783423 MsG0480021900.01.T01:intron 20.0%
!!! TTCAATAAGTTTTTTGGAAT+GGG + Chr4:65782933-65782952 MsG0480021900.01.T01:intron 20.0%
! AAACCGATATTTAATGTTTG+TGG + Chr4:65782276-65782295 MsG0480021900.01.T01:intron 25.0%
! AAATTTGGGAACATGATATT+TGG + Chr4:65781663-65781682 MsG0480021900.01.T01:intron 25.0%
! AACCACATATCAACATTAAA+TGG - Chr4:65782172-65782191 None:intergenic 25.0%
! AATGCAAATCAAAATACAAC+TGG - Chr4:65781600-65781619 None:intergenic 25.0%
! AGTTAAGAGAATATTGATGA+TGG - Chr4:65784441-65784460 None:intergenic 25.0%
! ATAAAATTCAAAACCCATCA+AGG - Chr4:65781167-65781186 None:intergenic 25.0%
! CTAGAGAAAAATAACGAAAT+TGG - Chr4:65781049-65781068 None:intergenic 25.0%
! GATGTTGCATTTAATTGTAA+TGG - Chr4:65784352-65784371 None:intergenic 25.0%
! GCATGATTTAATGTCTTATA+AGG + Chr4:65782559-65782578 MsG0480021900.01.T01:intron 25.0%
! GGATAGGAAAAAACAAAAAA+TGG - Chr4:65780928-65780947 None:intergenic 25.0%
! GTAATGAAAAAAGAAGTTCT+TGG - Chr4:65783271-65783290 None:intergenic 25.0%
! GTTAAACACTTTCTTATAGA+TGG + Chr4:65784253-65784272 MsG0480021900.01.T01:intron 25.0%
! GTTATATTCCATTGTGAAAA+TGG - Chr4:65782380-65782399 None:intergenic 25.0%
! TAAAACAAAACAATGTGGTT+TGG + Chr4:65781706-65781725 MsG0480021900.01.T01:intron 25.0%
! TAAAATTCAAAACCCATCAA+GGG - Chr4:65781166-65781185 None:intergenic 25.0%
! TAAACACTTTCTTATAGATG+GGG + Chr4:65784255-65784274 MsG0480021900.01.T01:intron 25.0%
! TAAGTAACCATTTATACAAC+TGG - Chr4:65782506-65782525 None:intergenic 25.0%
! TGATTTAATGTCTTATAAGG+GGG + Chr4:65782562-65782581 MsG0480021900.01.T01:intron 25.0%
! TTGCCACAAACATTAAATAT+CGG - Chr4:65782282-65782301 None:intergenic 25.0%
!! ATAATTTTCTCTTCCCTTTT+TGG + Chr4:65784022-65784041 MsG0480021900.01.T01:intron 25.0%
!! ATTTTGTCCTGTTGTAAATT+TGG + Chr4:65781648-65781667 MsG0480021900.01.T01:intron 25.0%
!! TTACATCCATTTTCTTGTAT+TGG + Chr4:65782303-65782322 MsG0480021900.01.T01:intron 25.0%
!! TTTTCACAATGGAATATAAC+TGG + Chr4:65782380-65782399 MsG0480021900.01.T01:CDS 25.0%
!! TTTTCAGACATGGTTTATTT+GGG + Chr4:65781236-65781255 MsG0480021900.01.T01:exon 25.0%
!! TTTTGTCCTGTTGTAAATTT+GGG + Chr4:65781649-65781668 MsG0480021900.01.T01:intron 25.0%
!!! ATACACCTTCTATTTTGATT+TGG - Chr4:65783481-65783500 None:intergenic 25.0%
!!! CAAACATTAAATATCGGTTT+AGG - Chr4:65782276-65782295 None:intergenic 25.0%
!!! CTCTTTTTCATGTTTTTATC+AGG + Chr4:65783403-65783422 MsG0480021900.01.T01:intron 25.0%
!!! CTTTTTCATGTTTTTATCAG+GGG + Chr4:65783405-65783424 MsG0480021900.01.T01:intron 25.0%
!!! GTGTTTTGACTTTATTGTTA+CGG + Chr4:65781483-65781502 MsG0480021900.01.T01:intron 25.0%
!!! GTTCAATAAGTTTTTTGGAA+TGG + Chr4:65782932-65782951 MsG0480021900.01.T01:intron 25.0%
!!! GTTGTATTTTGATTTGCATT+AGG + Chr4:65781600-65781619 MsG0480021900.01.T01:intron 25.0%
!!! TACACCTTCTATTTTGATTT+GGG - Chr4:65783480-65783499 None:intergenic 25.0%
!!! TGGGTTTTGAATTTTATTGT+TGG + Chr4:65781170-65781189 MsG0480021900.01.T01:five_prime_UTR 25.0%
!!! TGTTACTAGTAATGTTGTTT+TGG + Chr4:65781554-65781573 MsG0480021900.01.T01:intron 25.0%
!!! TTTTTCATGTTTTTATCAGG+GGG + Chr4:65783406-65783425 MsG0480021900.01.T01:intron 25.0%
!!! TTTTTTCAGTGGATTTTTTC+TGG + Chr4:65782332-65782351 MsG0480021900.01.T01:intron 25.0%
!!! TTTTTTTTAGTTGTGCACAT+TGG + Chr4:65782074-65782093 MsG0480021900.01.T01:intron 25.0%
AATATAACTGGAACTTACAG+AGG + Chr4:65782392-65782411 MsG0480021900.01.T01:CDS 30.0%
AATGCTTAGTTGCTATATGT+TGG + Chr4:65783887-65783906 MsG0480021900.01.T01:intron 30.0%
AGTACTCGAGTATTCTTTAT+CGG + Chr4:65781854-65781873 MsG0480021900.01.T01:intron 30.0%
CAAGACATGTAAATGCAATA+AGG - Chr4:65783575-65783594 None:intergenic 30.0%
CAATGGCTCTTATAAATATC+CGG + Chr4:65783027-65783046 MsG0480021900.01.T01:CDS 30.0%
GAAGTATATCTAATGTACTG+GGG + Chr4:65783636-65783655 MsG0480021900.01.T01:intron 30.0%
GAATAAACTTAGAGCCAATT+TGG + Chr4:65782717-65782736 MsG0480021900.01.T01:intron 30.0%
GACCATTTAATGTTGATATG+TGG + Chr4:65782167-65782186 MsG0480021900.01.T01:intron 30.0%
GTTGAAAAGTTTGTCCAAAT+TGG - Chr4:65782734-65782753 None:intergenic 30.0%
TAACACAGAGACAATAATGT+TGG - Chr4:65784469-65784488 None:intergenic 30.0%
TACGATAACATAGTGAGAAT+TGG - Chr4:65782004-65782023 None:intergenic 30.0%
TCAACAACCAGTTGTATAAA+TGG + Chr4:65782496-65782515 MsG0480021900.01.T01:intron 30.0%
TGAACCTTGAAATTGTTTGA+GGG + Chr4:65781951-65781970 MsG0480021900.01.T01:intron 30.0%
TGGAATCAGCTAATTGAATT+GGG + Chr4:65781190-65781209 MsG0480021900.01.T01:five_prime_UTR 30.0%
TGGTTTAGATTCAATACCTT+TGG + Chr4:65782187-65782206 MsG0480021900.01.T01:intron 30.0%
TTATAAGGGGGATATATGAT+TGG + Chr4:65782574-65782593 MsG0480021900.01.T01:intron 30.0%
TTGGAATCAGCTAATTGAAT+TGG + Chr4:65781189-65781208 MsG0480021900.01.T01:five_prime_UTR 30.0%
TTGGTTAAGAGGAAGAAATT+TGG + Chr4:65781302-65781321 MsG0480021900.01.T01:CDS 30.0%
TTTATCCAATCCATATCATC+TGG + Chr4:65783726-65783745 MsG0480021900.01.T01:CDS 30.0%
TTTCAGACATGGTTTATTTG+GGG + Chr4:65781237-65781256 MsG0480021900.01.T01:exon 30.0%
! AGGAAGTATATCTAATGTAC+TGG + Chr4:65783634-65783653 MsG0480021900.01.T01:intron 30.0%
! CATAACATTCTTTTCAGACA+TGG + Chr4:65781226-65781245 MsG0480021900.01.T01:exon 30.0%
! CTTTTCAGACATGGTTTATT+TGG + Chr4:65781235-65781254 MsG0480021900.01.T01:exon 30.0%
! GCTATATAACTGGTTTCATA+AGG + Chr4:65783142-65783161 MsG0480021900.01.T01:intron 30.0%
! GGAAGAAATTTGGTATTTTG+CGG + Chr4:65781312-65781331 MsG0480021900.01.T01:CDS 30.0%
! GGAAGTATATCTAATGTACT+GGG + Chr4:65783635-65783654 MsG0480021900.01.T01:intron 30.0%
!! AAGAGAATATTGATGATGGA+AGG - Chr4:65784437-65784456 None:intergenic 30.0%
!! AGCTACAAGTTGTTTTCATT+TGG + Chr4:65781002-65781021 MsG0480021900.01.T01:five_prime_UTR 30.0%
!! CCATTTATTTTTCTGATGTC+CGG - Chr4:65783049-65783068 None:intergenic 30.0%
!!! AGAATCAGGTTGAATTTTAG+TGG + Chr4:65781820-65781839 MsG0480021900.01.T01:intron 30.0%
!!! AGGTTGAATTTTAGTGGATT+AGG + Chr4:65781826-65781845 MsG0480021900.01.T01:intron 30.0%
!!! CTTTTTTTGAAGAGAGAATC+AGG + Chr4:65781806-65781825 MsG0480021900.01.T01:intron 30.0%
!!! GAAGTTTTAGATACTACCAA+TGG + Chr4:65783010-65783029 MsG0480021900.01.T01:CDS 30.0%
!!! TCTATGATCTGTGTTACTTT+TGG + Chr4:65783845-65783864 MsG0480021900.01.T01:intron 30.0%
!!! TTAGAGAGCTTTTTTTCTGT+TGG - Chr4:65783304-65783323 None:intergenic 30.0%
!!! TTTTGTTTTCTTCTTTGCAG+CGG + Chr4:65783666-65783685 MsG0480021900.01.T01:intron 30.0%
AACAAGTTAGTAGTACAACG+CGG - Chr4:65784053-65784072 None:intergenic 35.0%
ACCATTCGAAGTTGTCTAAA+AGG - Chr4:65783512-65783531 None:intergenic 35.0%
AGACCATTAAGGGATAAAAC+TGG + Chr4:65781392-65781411 MsG0480021900.01.T01:CDS 35.0%
AGATGCAATACCAGATGATA+TGG - Chr4:65783739-65783758 None:intergenic 35.0%
AGCTAATTGAATTGGGAACT+GGG + Chr4:65781197-65781216 MsG0480021900.01.T01:five_prime_UTR 35.0%
ATATTACTCTCCTTGAATGC+AGG + Chr4:65782981-65783000 MsG0480021900.01.T01:intron 35.0%
ATGTACACCAGTTATCTTTG+TGG - Chr4:65783101-65783120 None:intergenic 35.0%
ATTTACATGTCTTGCTCTGA+TGG + Chr4:65783581-65783600 MsG0480021900.01.T01:intron 35.0%
CAATACCAGATGATATGGAT+TGG - Chr4:65783734-65783753 None:intergenic 35.0%
CATGTTCCCAAATTTACAAC+AGG - Chr4:65781658-65781677 None:intergenic 35.0%
CCGGACATCAGAAAAATAAA+TGG + Chr4:65783046-65783065 MsG0480021900.01.T01:CDS 35.0%
CGGATATTTATAAGAGCCAT+TGG - Chr4:65783029-65783048 None:intergenic 35.0%
CTGAACCTTGAAATTGTTTG+AGG + Chr4:65781950-65781969 MsG0480021900.01.T01:intron 35.0%
CTTAATCCATTTCCCTTGAT+GGG + Chr4:65781151-65781170 MsG0480021900.01.T01:five_prime_UTR 35.0%
GAGATGTTGAGCTATATAAC+TGG + Chr4:65783132-65783151 MsG0480021900.01.T01:intron 35.0%
GCAATGCCAATACAAGAAAA+TGG - Chr4:65782312-65782331 None:intergenic 35.0%
GTAACGTTGAAATTTCAGCA+CGG + Chr4:65784121-65784140 MsG0480021900.01.T01:CDS 35.0%
TAACGTTGAAATTTCAGCAC+GGG + Chr4:65784122-65784141 MsG0480021900.01.T01:CDS 35.0%
TATTACTCTCCTTGAATGCA+GGG + Chr4:65782982-65783001 MsG0480021900.01.T01:intron 35.0%
TCAAAGGTTGGAACTTTGTT+TGG + Chr4:65781283-65781302 MsG0480021900.01.T01:CDS 35.0%
TCGACAACGAATACAATGTT+GGG + Chr4:65783450-65783469 MsG0480021900.01.T01:CDS 35.0%
TCTACCCTCAAACAATTTCA+AGG - Chr4:65781958-65781977 None:intergenic 35.0%
TCTTAATCCATTTCCCTTGA+TGG + Chr4:65781150-65781169 MsG0480021900.01.T01:five_prime_UTR 35.0%
TGTACACCAGTTATCTTTGT+GGG - Chr4:65783100-65783119 None:intergenic 35.0%
TTCGACAACGAATACAATGT+TGG + Chr4:65783449-65783468 MsG0480021900.01.T01:CDS 35.0%
TTTACATGTCTTGCTCTGAT+GGG + Chr4:65783582-65783601 MsG0480021900.01.T01:intron 35.0%
! AACTGGTTTCATAAGGAAGT+TGG + Chr4:65783149-65783168 MsG0480021900.01.T01:intron 35.0%
! ACATAGGTCCATTTTCACAA+TGG + Chr4:65782369-65782388 MsG0480021900.01.T01:CDS 35.0%
! AGAAATTTGGTATTTTGCGG+AGG + Chr4:65781315-65781334 MsG0480021900.01.T01:CDS 35.0%
! ATTTTAGATTGATCGCGTTG+AGG + Chr4:65782445-65782464 MsG0480021900.01.T01:intron 35.0%
! ATTTTCACTTCCCAAGCAAT+TGG + Chr4:65783234-65783253 MsG0480021900.01.T01:intron 35.0%
! GACTTTATTGTTACGGATTG+TGG + Chr4:65781490-65781509 MsG0480021900.01.T01:intron 35.0%
! GCACTTCTGGAAAAAAATTG+AGG - Chr4:65782853-65782872 None:intergenic 35.0%
! GGTTTATTTGGGGTTTGATA+TGG + Chr4:65781247-65781266 MsG0480021900.01.T01:CDS 35.0%
! GTTGAGGTATATTTTCAGTC+TGG + Chr4:65782461-65782480 MsG0480021900.01.T01:intron 35.0%
! TGGAACTTTGTTTGGTTAAG+AGG + Chr4:65781291-65781310 MsG0480021900.01.T01:CDS 35.0%
! TTAGTTGCTATATGTTGGCT+TGG + Chr4:65783892-65783911 MsG0480021900.01.T01:intron 35.0%
! TTTTCAGCTGGAAGGATTAA+TGG + Chr4:65784288-65784307 MsG0480021900.01.T01:CDS 35.0%
!! AAACAATGTGGTTTGGTCAA+AGG + Chr4:65781713-65781732 MsG0480021900.01.T01:intron 35.0%
!! AACAATGTGGTTTGGTCAAA+GGG + Chr4:65781714-65781733 MsG0480021900.01.T01:intron 35.0%
!! GAACCAGTTTTATCCCTTAA+TGG - Chr4:65781398-65781417 None:intergenic 35.0%
!! TAGTAAGATAAGAGCACTTC+TGG - Chr4:65782866-65782885 None:intergenic 35.0%
!! TTGATGATGGAAGGATACAA+AGG - Chr4:65784428-65784447 None:intergenic 35.0%
!! TTTTCTCTTCCCTTTTTGGT+TGG + Chr4:65784026-65784045 MsG0480021900.01.T01:intron 35.0%
!!! ATTAGGTGTCACTGTTTTCT+CGG + Chr4:65781617-65781636 MsG0480021900.01.T01:intron 35.0%
!!! ATTGGCATTGCTTTTTTCAG+TGG + Chr4:65782321-65782340 MsG0480021900.01.T01:intron 35.0%
AACTGGTGTACATTATGTGC+AGG + Chr4:65783108-65783127 MsG0480021900.01.T01:CDS 40.0%
AGCAGTGAACTATACCTTGA+TGG + Chr4:65784399-65784418 MsG0480021900.01.T01:CDS 40.0%
AGTACACCCACAAAGATAAC+TGG + Chr4:65783091-65783110 MsG0480021900.01.T01:CDS 40.0%
ATTAATGGAAAGTCCGTCTG+TGG + Chr4:65784303-65784322 MsG0480021900.01.T01:CDS 40.0%
CAGCTAATTGAATTGGGAAC+TGG + Chr4:65781196-65781215 MsG0480021900.01.T01:five_prime_UTR 40.0%
CGACAACGAATACAATGTTG+GGG + Chr4:65783451-65783470 MsG0480021900.01.T01:CDS 40.0%
CTCGACTGCAAATGAAAGTT+TGG + Chr4:65783329-65783348 MsG0480021900.01.T01:intron 40.0%
GACAACGAATACAATGTTGG+GGG + Chr4:65783452-65783471 MsG0480021900.01.T01:CDS 40.0%
GAGTTCTCTGAGCGTTAATA+AGG + Chr4:65784182-65784201 MsG0480021900.01.T01:intron 40.0%
GATGCATATTGTTCACCTGT+TGG - Chr4:65783537-65783556 None:intergenic 40.0%
GCAAGTAGAACCAATTGCTT+GGG - Chr4:65783247-65783266 None:intergenic 40.0%
GGAAAAGATGAAAGCGACAT+AGG + Chr4:65782353-65782372 MsG0480021900.01.T01:CDS 40.0%
GGATACAAAGGTAACCATCA+AGG - Chr4:65784416-65784435 None:intergenic 40.0%
GGTGCCCAAATCAAAATAGA+AGG + Chr4:65783473-65783492 MsG0480021900.01.T01:CDS 40.0%
TAACTGGAACTTACAGAGGT+TGG + Chr4:65782396-65782415 MsG0480021900.01.T01:CDS 40.0%
TCAAAACCCATCAAGGGAAA+TGG - Chr4:65781160-65781179 None:intergenic 40.0%
TCCATTAGCAGTAGCACTAA+AGG - Chr4:65782249-65782268 None:intergenic 40.0%
TGCAAGTAGAACCAATTGCT+TGG - Chr4:65783248-65783267 None:intergenic 40.0%
TGGTAAAACAAAGTCCTCAG+AGG - Chr4:65782217-65782236 None:intergenic 40.0%
TTCTTTGCAGCGGAAAAAGA+GGG + Chr4:65783676-65783695 MsG0480021900.01.T01:intron 40.0%
! ACTTTTCAACGAGCACTAAC+AGG + Chr4:65782744-65782763 MsG0480021900.01.T01:intron 40.0%
! CATGATTCTTTTCAGCTGGA+AGG + Chr4:65784280-65784299 MsG0480021900.01.T01:CDS 40.0%
! GCCTTTTAGACAACTTCGAA+TGG + Chr4:65783508-65783527 MsG0480021900.01.T01:CDS 40.0%
! TTGGAATGGGTGTTGTCATT+TGG + Chr4:65782946-65782965 MsG0480021900.01.T01:intron 40.0%
! TTGTTTCTTAGTCCTGTGGT+TGG + Chr4:65781365-65781384 MsG0480021900.01.T01:CDS 40.0%
! TTTGGGGTTTGATATGGTTG+AGG + Chr4:65781253-65781272 MsG0480021900.01.T01:CDS 40.0%
! TTTTTCTCCATGCCATGCAA+TGG - Chr4:65784099-65784118 None:intergenic 40.0%
!! AAGGGATAAAACTGGTTCGT+GGG + Chr4:65781400-65781419 MsG0480021900.01.T01:CDS 40.0%
!! AGCACTAAAGGCATGTCTTT+TGG - Chr4:65782237-65782256 None:intergenic 40.0%
!! ATACCTTTGGAATTCCTCTG+AGG + Chr4:65782200-65782219 MsG0480021900.01.T01:intron 40.0%
!! TAAGGGATAAAACTGGTTCG+TGG + Chr4:65781399-65781418 MsG0480021900.01.T01:CDS 40.0%
!! TCTGTTGTTTCTTAGTCCTG+TGG + Chr4:65781361-65781380 MsG0480021900.01.T01:CDS 40.0%
AACTTCGAATGGTAGCCAAC+AGG + Chr4:65783519-65783538 MsG0480021900.01.T01:CDS 45.0%
AATCTTCGCGACATACGATG+TGG + Chr4:65783955-65783974 MsG0480021900.01.T01:intron 45.0%
AGTCCTCAGAGGAATTCCAA+AGG - Chr4:65782206-65782225 None:intergenic 45.0%
ATTCGTTGTCGAACACATCG+TGG - Chr4:65783442-65783461 None:intergenic 45.0%
CGCTTGTCATCGTCAAAACA+TGG + Chr4:65784150-65784169 MsG0480021900.01.T01:CDS 45.0%
CTTCTTTGCAGCGGAAAAAG+AGG + Chr4:65783675-65783694 MsG0480021900.01.T01:intron 45.0%
CTTGATGTATCGCTCATCGT+TGG + Chr4:65783761-65783780 MsG0480021900.01.T01:intron 45.0%
TCGTATGTCGCGAAGATTCT+TGG - Chr4:65783953-65783972 None:intergenic 45.0%
TGAGGTTGAAGCTCAAAGGT+TGG + Chr4:65781271-65781290 MsG0480021900.01.T01:CDS 45.0%
TGGTTGAGGTTGAAGCTCAA+AGG + Chr4:65781267-65781286 MsG0480021900.01.T01:CDS 45.0%
TTCCAGTAGTTGACGAGGTT+TGG - Chr4:65780894-65780913 None:intergenic 45.0%
TTTGGTCAAAGGGCTAAAGG+TGG + Chr4:65781724-65781743 MsG0480021900.01.T01:intron 45.0%
! ATTTTGCGGAGGACTGTGTT+TGG + Chr4:65781326-65781345 MsG0480021900.01.T01:CDS 45.0%
! CGAAATTGGCTTCAACAGCA+AGG - Chr4:65781035-65781054 None:intergenic 45.0%
! GCCTTTAGTGCTACTGCTAA+TGG + Chr4:65782245-65782264 MsG0480021900.01.T01:intron 45.0%
! GGAGCATGATTCTTTTCAGC+TGG + Chr4:65784276-65784295 MsG0480021900.01.T01:CDS 45.0%
! GTTACGGATTGTGGTAACTG+TGG + Chr4:65781499-65781518 MsG0480021900.01.T01:intron 45.0%
!! AGGGATAAAACTGGTTCGTG+GGG + Chr4:65781401-65781420 MsG0480021900.01.T01:CDS 45.0%
!! GAGGACTGTGTTTGGTTTGT+TGG + Chr4:65781334-65781353 MsG0480021900.01.T01:CDS 45.0%
!! GGTTGGTCTCAGACCATTAA+GGG + Chr4:65781382-65781401 MsG0480021900.01.T01:CDS 45.0%
!! GTGTTGTTTGCAAGTCATGC+TGG - Chr4:65780864-65780883 None:intergenic 45.0%
!! TGGTTGGTCTCAGACCATTA+AGG + Chr4:65781381-65781400 MsG0480021900.01.T01:CDS 45.0%
!! TGGTTTGGTCAAAGGGCTAA+AGG + Chr4:65781721-65781740 MsG0480021900.01.T01:intron 45.0%
!! TTGGCTTGGTGTATACAGCT+TGG + Chr4:65783906-65783925 MsG0480021900.01.T01:intron 45.0%
ACAACGCGGACCAACCAAAA+AGG - Chr4:65784039-65784058 None:intergenic 50.0%
CAACGCGGACCAACCAAAAA+GGG - Chr4:65784038-65784057 None:intergenic 50.0%
CACCAAACCTCGTCAACTAC+TGG + Chr4:65780889-65780908 MsG0480021900.01.T01:five_prime_UTR 50.0%
GAGGGAGGGTTGAATCAAGA+TGG + Chr4:65783694-65783713 MsG0480021900.01.T01:CDS 50.0%
TCACTGTCTTGTGACTCGAG+TGG + Chr4:65781078-65781097 MsG0480021900.01.T01:five_prime_UTR 50.0%
TCTCCATCGTCATCCACAGA+CGG - Chr4:65784319-65784338 None:intergenic 50.0%
TTGCAGCGGAAAAAGAGGGA+GGG + Chr4:65783680-65783699 MsG0480021900.01.T01:intron 50.0%
TTTGCAGCGGAAAAAGAGGG+AGG + Chr4:65783679-65783698 MsG0480021900.01.T01:intron 50.0%
! AATGGTCTGAGACCAACCAC+AGG - Chr4:65781380-65781399 None:intergenic 50.0%
! GGGTTTTCCAGTAGTTGACG+AGG - Chr4:65780899-65780918 None:intergenic 50.0%
AGTCCGTCTGTGGATGACGA+TGG + Chr4:65784313-65784332 MsG0480021900.01.T01:CDS 55.0%
ATGCAATGGAGCTGCGGAGA+GGG - Chr4:65784085-65784104 None:intergenic 55.0%
CATGCCATGCAATGGAGCTG+CGG - Chr4:65784091-65784110 None:intergenic 55.0%
CTTCCACGTCCCTGCATTCA+AGG - Chr4:65782994-65783013 None:intergenic 55.0%
TCTCCTTGAATGCAGGGACG+TGG + Chr4:65782988-65783007 MsG0480021900.01.T01:intron 55.0%
!! AACTGGTTCGTGGGGTGATG+AGG + Chr4:65781409-65781428 MsG0480021900.01.T01:CDS 55.0%
CATGCAATGGAGCTGCGGAG+AGG - Chr4:65784086-65784105 None:intergenic 60.0%
CGCAGCTCCATTGCATGGCA+TGG + Chr4:65784089-65784108 MsG0480021900.01.T01:intron 60.0%
CTCTCCGCAGCTCCATTGCA+TGG + Chr4:65784084-65784103 MsG0480021900.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 65780857 65784489 65780857 ID=MsG0480021900.01;Name=MsG0480021900.01
Chr4 mRNA 65780857 65784489 65780857 ID=MsG0480021900.01.T01;Parent=MsG0480021900.01;Name=MsG0480021900.01.T01;_AED=0.41;_eAED=0.42;_QI=388|0.66|0.71|1|1|1|7|0|287
Chr4 exon 65780857 65781430 65780857 ID=MsG0480021900.01.T01:exon:7987;Parent=MsG0480021900.01.T01
Chr4 exon 65782341 65782417 65782341 ID=MsG0480021900.01.T01:exon:7988;Parent=MsG0480021900.01.T01
Chr4 exon 65783003 65783129 65783003 ID=MsG0480021900.01.T01:exon:7989;Parent=MsG0480021900.01.T01
Chr4 exon 65783425 65783540 65783425 ID=MsG0480021900.01.T01:exon:7990;Parent=MsG0480021900.01.T01
Chr4 exon 65783686 65783747 65783686 ID=MsG0480021900.01.T01:exon:7991;Parent=MsG0480021900.01.T01
Chr4 exon 65784094 65784171 65784094 ID=MsG0480021900.01.T01:exon:7992;Parent=MsG0480021900.01.T01
Chr4 exon 65784272 65784489 65784272 ID=MsG0480021900.01.T01:exon:7993;Parent=MsG0480021900.01.T01
Chr4 five_prime_UTR 65780857 65781244 65780857 ID=MsG0480021900.01.T01:five_prime_utr;Parent=MsG0480021900.01.T01
Chr4 CDS 65781245 65781430 65781245 ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4 CDS 65782341 65782417 65782341 ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4 CDS 65783003 65783129 65783003 ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4 CDS 65783425 65783540 65783425 ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4 CDS 65783686 65783747 65783686 ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4 CDS 65784094 65784171 65784094 ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4 CDS 65784272 65784489 65784272 ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Gene Sequence

>MsG0480021900.01.T01

ATGGTTTATTTGGGGTTTGATATGGTTGAGGTTGAAGCTCAAAGGTTGGAACTTTGTTTGGTTAAGAGGAAGAAATTTGGTATTTTGCGGAGGACTGTGTTTGGTTTGTTGGTGTTTCTGTTGTTTCTTAGTCCTGTGGTTGGTCTCAGACCATTAAGGGATAAAACTGGTTCGTGGGGTGATGAGTGGATTTTTTCTGGAAAAGATGAAAGCGACATAGGTCCATTTTCACAATGGAATATAACTGGAACTTACAGAGGTTGGGACGTGGAAGTTTTAGATACTACCAATGGCTCTTATAAATATCCGGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTACACCCACAAAGATAACTGGTGTACATTATGTGCAGGGGGTTGTTATATTCCACGATGTGTTCGACAACGAATACAATGTTGGGGGTGCCCAAATCAAAATAGAAGGTGTATATATATGGCCTTTTAGACAACTTCGAATGGTAGCCAACAGCGGAAAAAGAGGGAGGGTTGAATCAAGATGGAGATTATATTTTATCCAATCCATATCATCTGCTCCATTGCATGGCATGGAGAAAAACTGTAACGTTGAAATTTCAGCACGGGTTTCACGCTTGTCATCGTCAAAACATGATGGGGAGCATGATTCTTTTCAGCTGGAAGGATTAATGGAAAGTCCGTCTGTGGATGACGATGGAGATTGCATCTCACCATTACAATTAAATGCAACATCTATTAATATTGGAGTCTACTACAATAAAGCAGTGAACTATACCTTGATGGTTACCTTTGTATCCTTCCATCATCAATATTCTCTTAACTTTAAGCCAACATTATTGTCTCTGTGTTAG

Protein sequence

>MsG0480021900.01.T01

MVYLGFDMVEVEAQRLELCLVKRKKFGILRRTVFGLLVFLLFLSPVVGLRPLRDKTGSWGDEWIFSGKDESDIGPFSQWNITGTYRGWDVEVLDTTNGSYKYPDIRKINGNSVIELVSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIKIEGVYIWPFRQLRMVANSGKRGRVESRWRLYFIQSISSAPLHGMEKNCNVEISARVSRLSSSKHDGEHDSFQLEGLMESPSVDDDGDCISPLQLNATSINIGVYYNKAVNYTLMVTFVSFHHQYSLNFKPTLLSLC*