AlfalfaGEDB | MsG0480021900.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021900.01

KEGG: K23788
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021900.01.T01	XP_012572684.1	79.252	294	36	5	1	271	1	292	6.88E-154	452

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021900.01.T01	Q500V2	58.364	269	87	5	26	271	7	273	5.73E-101	309

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021900.01.T01	A0A1S3EBD9	79.252	294	36	5	1	271	1	292	3.29e-154	452

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047797.01	MsG0480021900.01	0.811635	6.342342e-51	3.946176e-48
MsG0080047825.01	MsG0480021900.01	0.844106	9.285056e-59	1.483532e-55
MsG0080048058.01	MsG0480021900.01	0.885257	9.501127e-72	6.475900e-68
MsG0080048177.01	MsG0480021900.01	0.845086	5.056398e-59	8.332190e-56
MsG0080048178.01	MsG0480021900.01	0.894663	1.994653e-75	2.002126e-71
MsG0080048210.01	MsG0480021900.01	0.817603	3.026363e-52	2.213913e-49
MsG0080048461.01	MsG0480021900.01	0.839722	1.336677e-57	1.862000e-54
MsG0080048602.01	MsG0480021900.01	0.835836	1.330551e-56	1.646579e-53
MsG0080048765.01	MsG0480021900.01	0.839924	1.184105e-57	1.660038e-54
MsG0080048809.01	MsG0480021900.01	-0.809585	1.759332e-50	1.037055e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021900.01.T01	MTR_4g078525	82.313	294	27	3	1	271	1	292	8.00e-156	447
MsG0480021900.01.T01	MTR_5g077340	84.615	39	6	0	179	217	23	61	3.29e-17	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021900.01.T01	AT2G20650	58.364	269	87	5	26	271	7	273	5.84e-102	309
MsG0480021900.01.T01	AT2G20650	58.364	269	87	5	26	271	7	273	5.84e-102	309
MsG0480021900.01.T01	AT4G28370	56.818	264	89	5	31	271	15	276	6.49e-97	296
MsG0480021900.01.T01	AT4G28370	56.818	264	89	5	31	271	15	276	6.49e-97	296
MsG0480021900.01.T01	AT4G28370	56.818	264	89	5	31	271	15	276	6.49e-97	296
MsG0480021900.01.T01	AT4G28370	56.818	264	89	5	31	271	15	276	6.49e-97	296

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Find 76 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGAAGGTGTATATATA+TGG	0.361668	4:+65783486	MsG0480021900.01.T01:CDS
AAATGGATTAAGAAAACAAA+AGG	0.427880	4:-65781140	None:intergenic
AACTGGTGTACATTATGTGC+AGG	0.617157	4:+65783108	MsG0480021900.01.T01:CDS
AACTGGTTCGTGGGGTGATG+AGG	0.515337	4:+65781409	MsG0480021900.01.T01:CDS
AACTTCGAATGGTAGCCAAC+AGG	0.513880	4:+65783519	MsG0480021900.01.T01:CDS
AAGAGAATATTGATGATGGA+AGG	0.562302	4:-65784434	None:intergenic
AAGGGATAAAACTGGTTCGT+GGG	0.528677	4:+65781400	MsG0480021900.01.T01:CDS
AATATAACTGGAACTTACAG+AGG	0.666924	4:+65782392	MsG0480021900.01.T01:CDS
AATGCAACATCTATTAATAT+TGG	0.258636	4:+65784361	MsG0480021900.01.T01:CDS
AATGGATTAAGAAAACAAAA+GGG	0.564697	4:-65781139	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATAACTGGAACTTACAG+AGG	+	Chr4:65782392-65782411	MsG0480021900.01.T01:CDS	30.0%
AATGCTTAGTTGCTATATGT+TGG	+	Chr4:65783887-65783906	MsG0480021900.01.T01:intron	30.0%
AGTACTCGAGTATTCTTTAT+CGG	+	Chr4:65781854-65781873	MsG0480021900.01.T01:intron	30.0%
CAAGACATGTAAATGCAATA+AGG	-	Chr4:65783575-65783594	None:intergenic	30.0%
CAATGGCTCTTATAAATATC+CGG	+	Chr4:65783027-65783046	MsG0480021900.01.T01:CDS	30.0%
GAAGTATATCTAATGTACTG+GGG	+	Chr4:65783636-65783655	MsG0480021900.01.T01:intron	30.0%
GAATAAACTTAGAGCCAATT+TGG	+	Chr4:65782717-65782736	MsG0480021900.01.T01:intron	30.0%
GACCATTTAATGTTGATATG+TGG	+	Chr4:65782167-65782186	MsG0480021900.01.T01:intron	30.0%
GTTGAAAAGTTTGTCCAAAT+TGG	-	Chr4:65782734-65782753	None:intergenic	30.0%
TAACACAGAGACAATAATGT+TGG	-	Chr4:65784469-65784488	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	65780857	65784489	65780857	ID=MsG0480021900.01;Name=MsG0480021900.01
Chr4	mRNA	65780857	65784489	65780857	ID=MsG0480021900.01.T01;Parent=MsG0480021900.01;Name=MsG0480021900.01.T01;_AED=0.41;_eAED=0.42;_QI=388\|0.66\|0.71\|1\|1\|1\|7\|0\|287
Chr4	exon	65780857	65781430	65780857	ID=MsG0480021900.01.T01:exon:7987;Parent=MsG0480021900.01.T01
Chr4	exon	65782341	65782417	65782341	ID=MsG0480021900.01.T01:exon:7988;Parent=MsG0480021900.01.T01
Chr4	exon	65783003	65783129	65783003	ID=MsG0480021900.01.T01:exon:7989;Parent=MsG0480021900.01.T01
Chr4	exon	65783425	65783540	65783425	ID=MsG0480021900.01.T01:exon:7990;Parent=MsG0480021900.01.T01
Chr4	exon	65783686	65783747	65783686	ID=MsG0480021900.01.T01:exon:7991;Parent=MsG0480021900.01.T01
Chr4	exon	65784094	65784171	65784094	ID=MsG0480021900.01.T01:exon:7992;Parent=MsG0480021900.01.T01
Chr4	exon	65784272	65784489	65784272	ID=MsG0480021900.01.T01:exon:7993;Parent=MsG0480021900.01.T01
Chr4	five_prime_UTR	65780857	65781244	65780857	ID=MsG0480021900.01.T01:five_prime_utr;Parent=MsG0480021900.01.T01
Chr4	CDS	65781245	65781430	65781245	ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4	CDS	65782341	65782417	65782341	ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4	CDS	65783003	65783129	65783003	ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4	CDS	65783425	65783540	65783425	ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4	CDS	65783686	65783747	65783686	ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4	CDS	65784094	65784171	65784094	ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01
Chr4	CDS	65784272	65784489	65784272	ID=MsG0480021900.01.T01:cds;Parent=MsG0480021900.01.T01

Gene Sequence

>MsG0480021900.01.T01

ATGGTTTATTTGGGGTTTGATATGGTTGAGGTTGAAGCTCAAAGGTTGGAACTTTGTTTGGTTAAGAGGAAGAAATTTGGTATTTTGCGGAGGACTGTGTTTGGTTTGTTGGTGTTTCTGTTGTTTCTTAGTCCTGTGGTTGGTCTCAGACCATTAAGGGATAAAACTGGTTCGTGGGGTGATGAGTGGATTTTTTCTGGAAAAGATGAAAGCGACATAGGTCCATTTTCACAATGGAATATAACTGGAACTTACAGAGGTTGGGACGTGGAAGTTTTAGATACTACCAATGGCTCTTATAAATATCCGGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTACACCCACAAAGATAACTGGTGTACATTATGTGCAGGGGGTTGTTATATTCCACGATGTGTTCGACAACGAATACAATGTTGGGGGTGCCCAAATCAAAATAGAAGGTGTATATATATGGCCTTTTAGACAACTTCGAATGGTAGCCAACAGCGGAAAAAGAGGGAGGGTTGAATCAAGATGGAGATTATATTTTATCCAATCCATATCATCTGCTCCATTGCATGGCATGGAGAAAAACTGTAACGTTGAAATTTCAGCACGGGTTTCACGCTTGTCATCGTCAAAACATGATGGGGAGCATGATTCTTTTCAGCTGGAAGGATTAATGGAAAGTCCGTCTGTGGATGACGATGGAGATTGCATCTCACCATTACAATTAAATGCAACATCTATTAATATTGGAGTCTACTACAATAAAGCAGTGAACTATACCTTGATGGTTACCTTTGTATCCTTCCATCATCAATATTCTCTTAACTTTAAGCCAACATTATTGTCTCTGTGTTAG

Protein sequence

>MsG0480021900.01.T01

MVYLGFDMVEVEAQRLELCLVKRKKFGILRRTVFGLLVFLLFLSPVVGLRPLRDKTGSWGDEWIFSGKDESDIGPFSQWNITGTYRGWDVEVLDTTNGSYKYPDIRKINGNSVIELVSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIKIEGVYIWPFRQLRMVANSGKRGRVESRWRLYFIQSISSAPLHGMEKNCNVEISARVSRLSSSKHDGEHDSFQLEGLMESPSVDDDGDCISPLQLNATSINIGVYYNKAVNYTLMVTFVSFHHQYSLNFKPTLLSLC*