AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011721.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011721.01.T01 MTR_3g009530 84.086 421 56 3 4 416 139 556 0.0 667
MsG0380011721.01.T01 MTR_3g009530 88.393 112 4 1 383 494 655 757 1.18e-58 207
MsG0380011721.01.T01 MTR_3g009530 89.398 349 34 1 37 385 1 346 0.0 593
MsG0380011721.01.T01 MTR_3g009530 88.393 112 4 1 383 494 484 586 2.61e-60 208
MsG0380011721.01.T01 MTR_5g099290 42.243 419 199 6 4 406 116 507 4.65e-76 251
MsG0380011721.01.T01 MTR_5g099290 42.243 419 199 6 4 406 116 507 3.00e-75 251
MsG0380011721.01.T01 MTR_5g099290 42.243 419 199 6 4 406 116 507 3.09e-75 251
MsG0380011721.01.T01 MTR_5g099290 39.663 416 186 6 4 406 116 479 3.26e-65 222
MsG0380011721.01.T01 MTR_5g099290 39.663 416 186 6 4 406 116 479 1.44e-64 221
MsG0380011721.01.T01 MTR_5g099290 43.770 313 155 2 4 313 116 410 4.12e-60 205
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011721.01.T01 AT1G55620 77.317 410 83 4 4 407 161 566 0.0 593
MsG0380011721.01.T01 AT1G55620 50.926 108 45 2 387 494 682 781 5.08e-26 112
MsG0380011721.01.T01 AT1G55620 75.936 374 80 4 40 407 1 370 2.03e-180 518
MsG0380011721.01.T01 AT1G55620 50.926 108 45 2 387 494 486 585 1.52e-26 113
MsG0380011721.01.T01 AT4G35440 45.542 415 201 5 4 406 106 507 1.52e-96 307
MsG0380011721.01.T01 AT4G35440 45.542 415 201 5 4 406 106 507 4.78e-96 306

Find 135 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATATTCCAGGATATTTA+AGG 0.176331 3:+4069411 None:intergenic
ACAGCTCTTTGCAAGGGCTC+TGG 0.217875 3:-4069284 MsG0380011721.01.T01:CDS
CTGGCTTCGTTTGCAGAGAT+TGG 0.220386 3:-4072210 MsG0380011721.01.T01:CDS
TTGTTATCCGAATACTAATT+TGG 0.225513 3:-4067396 MsG0380011721.01.T01:CDS
GACTATATCCAGGAGAAATT+TGG 0.229814 3:-4069488 MsG0380011721.01.T01:CDS
AACTGTATCAAATGTCTTAC+AGG 0.230240 3:-4070433 MsG0380011721.01.T01:CDS
CTACCTTTATACCTGATATT+AGG 0.275635 3:-4069575 MsG0380011721.01.T01:CDS
ATTCAAGCTGCAGTTACTTT+AGG 0.280234 3:-4072023 MsG0380011721.01.T01:CDS
TACAACTGCCATGATTATAT+TGG 0.284492 3:-4070472 MsG0380011721.01.T01:CDS
AATATCCTGGAATATTATAC+TGG 0.291535 3:-4069406 MsG0380011721.01.T01:CDS
TGCAAGGGCTCTGGGCTTGT+AGG 0.300501 3:-4069275 MsG0380011721.01.T01:CDS
TTTAGGTACTGGCTGTTCAT+TGG 0.303630 3:-4072006 MsG0380011721.01.T01:CDS
ACCATGACTCCTCCGGTTAC+AGG 0.314186 3:+4072158 None:intergenic
CAGCTCTTTGCAAGGGCTCT+GGG 0.316199 3:-4069283 MsG0380011721.01.T01:CDS
GTGCTTCTGCTCCTGGAATA+TGG 0.331356 3:-4069343 MsG0380011721.01.T01:CDS
CAATGACTCGTTTGGTTGCT+TGG 0.331580 3:-4069526 MsG0380011721.01.T01:CDS
ATAATCATGGCAGTTGTAAA+TGG 0.332811 3:+4070477 None:intergenic
GGCTTCAATGCAGCAGTTGC+AGG 0.351636 3:-4070555 MsG0380011721.01.T01:CDS
GTGTGGTTTACTAGAAATAT+TGG 0.355175 3:-4072126 MsG0380011721.01.T01:CDS
TTAGGTACTGGCTGTTCATT+GGG 0.358475 3:-4072005 MsG0380011721.01.T01:CDS
GCAGCAGCTGGAATTTCTTC+AGG 0.362055 3:-4071879 MsG0380011721.01.T01:intron
TGCCCTGCCATAGGTGGTTT+AGG 0.367716 3:-4069449 MsG0380011721.01.T01:CDS
GCTGCAGTTGGTGCTGTGTT+TGG 0.372767 3:-4069222 MsG0380011721.01.T01:CDS
ATTCCTAATATCAGGTATAA+AGG 0.376141 3:+4069572 None:intergenic
GCCATAGGTGGTTTAGGAGC+TGG 0.378901 3:-4069443 MsG0380011721.01.T01:CDS
ACAGAAAACAATTTGACAAA+TGG 0.391756 3:-4066791 MsG0380011721.01.T01:CDS
GGCTTACCAGAGCATAAGCC+TGG 0.405869 3:+4069139 None:intergenic
GGAAAGAGTGCTTCTGCTCC+TGG 0.406413 3:-4069350 MsG0380011721.01.T01:CDS
AAGTCAAAACCTTGTCTTTG+AGG 0.411275 3:+4072077 None:intergenic
CTTCCACCGCGTTTAACTAC+TGG 0.414609 3:+4067329 None:intergenic
ATGTCAACACTAGGACCTTC+AGG 0.420080 3:+4071981 None:intergenic
CAGGCACTGTAAAAGCTGAT+TGG 0.422551 3:+4070406 None:intergenic
TGTGCAACAGCAGCATTTCC+AGG 0.423733 3:+4069165 None:intergenic
GTTGCAGCTGGTGCAGCAGC+TGG 0.424808 3:-4071891 MsG0380011721.01.T01:CDS
TCCTTCATTATGACGAACTA+TGG 0.426948 3:-4067271 MsG0380011721.01.T01:CDS
ATCATTGCCCTTAAATATCC+TGG 0.429383 3:-4069419 MsG0380011721.01.T01:CDS
ACGAACTATGGCACTGTCTC+AGG 0.429918 3:-4067259 MsG0380011721.01.T01:intron
CACACAGCATTCCTAATATC+AGG 0.431743 3:+4069564 None:intergenic
GGCCACGGCTAGAGAGTTGA+TGG 0.437465 3:-4067375 MsG0380011721.01.T01:CDS
TGAGTTAGAAGCCATATTCC+AGG 0.441628 3:+4069332 None:intergenic
AGCCAGGCAGCACCCTCATT+CGG 0.445698 3:+4072227 None:intergenic
GCAGTTGGTGCTGTGTTTGG+AGG 0.445882 3:-4069219 MsG0380011721.01.T01:CDS
GTTATCAATTCAGCAATTCC+TGG 0.446728 3:-4069183 MsG0380011721.01.T01:CDS
AAACCCCAGTATAATATTCC+AGG 0.447643 3:+4069401 None:intergenic
AGTCAAAACCTTGTCTTTGA+GGG 0.448717 3:+4072078 None:intergenic
GCCGTGGCCAAATTAGTATT+CGG 0.450163 3:+4067389 None:intergenic
CCATAGGTGGTTTAGGAGCT+GGG 0.452875 3:-4069442 MsG0380011721.01.T01:CDS
TAATATTCCAGGATATTTAA+GGG 0.456614 3:+4069412 None:intergenic
CTAGAGAGTTGATGGAGGCC+AGG 0.458606 3:-4067367 MsG0380011721.01.T01:CDS
GTGGAAGAAATTCTACGTAC+TGG 0.465680 3:-4069371 MsG0380011721.01.T01:CDS
TGCTGCTGTTGCACAACCCC+AGG 0.472828 3:-4069157 MsG0380011721.01.T01:CDS
CCCAGCTCCTAAACCACCTA+TGG 0.473469 3:+4069442 None:intergenic
CTCCGAATGAGGGTGCTGCC+TGG 0.475061 3:-4072229 MsG0380011721.01.T01:CDS
CAGAAAACAATTTGACAAAT+GGG 0.478761 3:-4066790 MsG0380011721.01.T01:CDS
AGGCACTGTAAAAGCTGATT+GGG 0.481783 3:+4070407 None:intergenic
TGGCTTCGTTTGCAGAGATT+GGG 0.483027 3:-4072209 MsG0380011721.01.T01:CDS
GGCTGTTCATTGGGTCCTGA+AGG 0.484109 3:-4071996 MsG0380011721.01.T01:CDS
TGCAGAGATTGGGTGATACA+TGG 0.484884 3:-4072199 MsG0380011721.01.T01:CDS
ATCGGAAAGTCGTGCGCCAA+TGG 0.485806 3:-4071960 MsG0380011721.01.T01:CDS
GAGAGGAAGCGAAGAATTGT+CGG 0.486398 3:-4067296 MsG0380011721.01.T01:CDS
TAGAATACTGCTTCCTCTCA+TGG 0.492339 3:-4068728 MsG0380011721.01.T01:intron
AAGCGTGGCAATGACTCGTT+TGG 0.492664 3:-4069534 MsG0380011721.01.T01:CDS
CATCATTAATGAGAATCCAT+TGG 0.492781 3:+4071944 None:intergenic
ACTGTAGTCTGCCCTGCCAT+AGG 0.499166 3:-4069458 MsG0380011721.01.T01:CDS
GCTGCAGTTACTTTAGGTAC+TGG 0.500181 3:-4072017 MsG0380011721.01.T01:CDS
GCTTGAATAGCCTTTACCGT+TGG 0.500425 3:+4072038 None:intergenic
CAATCTCTGCAAACGAAGCC+AGG 0.502178 3:+4072211 None:intergenic
AACAGAAGCCAATATAATCA+TGG 0.502461 3:+4070464 None:intergenic
TGGTAATTGCTTAACGCCCC+TGG 0.508454 3:+4067349 None:intergenic
GTTTCCTCTGTTTGTACTCG+AGG 0.510022 3:-4067455 MsG0380011721.01.T01:CDS
CAATGGATTCTCATTAATGA+TGG 0.511491 3:-4071943 MsG0380011721.01.T01:CDS
GCTCCTAAACCACCTATGGC+AGG 0.513781 3:+4069446 None:intergenic
TGATATTTATGTTAATGTGC+AGG 0.513787 3:-4066853 MsG0380011721.01.T01:CDS
CTCCGGTTACAGGTATCAAA+AGG 0.516383 3:+4072168 None:intergenic
AATATTGGATCAAATAAAGC+AGG 0.518607 3:-4072111 MsG0380011721.01.T01:CDS
GCAGATTTCAACTCGTACTC+AGG 0.519595 3:+4070387 None:intergenic
TATTGCCACAGCTCTTTGCA+AGG 0.519958 3:-4069291 MsG0380011721.01.T01:CDS
AAAATAGCACTTGTTGCAGC+TGG 0.520530 3:-4071903 MsG0380011721.01.T01:CDS
ACCTGTAACCGGAGGAGTCA+TGG 0.521632 3:-4072159 MsG0380011721.01.T01:CDS
GTGGGCTGGTACTCCGAATG+AGG 0.523851 3:-4072240 MsG0380011721.01.T01:CDS
AGGTGCATGTAATACATGAA+TGG 0.524696 3:-4072263 None:intergenic
TGGGCTGGTACTCCGAATGA+GGG 0.525113 3:-4072239 MsG0380011721.01.T01:CDS
ATATCCTGGAATATTATACT+GGG 0.526329 3:-4069405 MsG0380011721.01.T01:CDS
TGGCTTCTAACTCAATTAGC+AGG 0.529356 3:-4069323 MsG0380011721.01.T01:CDS
AACTCAATTAGCAGGTGCTA+AGG 0.529397 3:-4069315 MsG0380011721.01.T01:CDS
TAGAGAGTTGATGGAGGCCA+GGG 0.533353 3:-4067366 MsG0380011721.01.T01:CDS
TTTGATAATCTAACTTTCTG+TGG 0.537945 3:+4066819 None:intergenic
TAGGAAGGCCAAATTTCTCC+TGG 0.539754 3:+4069480 None:intergenic
AGGAATCTATCCAACGGTAA+AGG 0.540393 3:-4072048 MsG0380011721.01.T01:CDS
GCCATAGTTCGTCATAATGA+AGG 0.541299 3:+4067270 None:intergenic
TTAACTTGTGCAGGTTGGAA+TGG 0.542954 3:-4068824 MsG0380011721.01.T01:intron
GGTGCATGTAATACATGAAT+GGG 0.551038 3:-4072262 None:intergenic
ATTGCCACAGCTCTTTGCAA+GGG 0.555909 3:-4069290 MsG0380011721.01.T01:CDS
AAGGGCTCTGGGCTTGTAGG+TGG 0.557216 3:-4069272 MsG0380011721.01.T01:CDS
ACAACCCCAGGCTTATGCTC+TGG 0.559697 3:-4069145 MsG0380011721.01.T01:intron
TCCGAATACTAATTTGGCCA+CGG 0.561548 3:-4067390 MsG0380011721.01.T01:CDS
CATGCCAACCATGACTCCTC+CGG 0.562534 3:+4072151 None:intergenic
GTAGTCTGCCCTGCCATAGG+TGG 0.563738 3:-4069455 MsG0380011721.01.T01:CDS
CTCCATCAACTCTCTAGCCG+TGG 0.573432 3:+4067373 None:intergenic
GCTTACCAGAGCATAAGCCT+GGG 0.582753 3:+4069140 None:intergenic
GTCAAAACCTTGTCTTTGAG+GGG 0.583643 3:+4072079 None:intergenic
TTTAATGATTGTGCTGCAGT+TGG 0.590103 3:-4069234 MsG0380011721.01.T01:CDS
GTCATGGTTGGCATGATGTG+TGG 0.594764 3:-4072143 MsG0380011721.01.T01:CDS
AGAGCCCTTGCAAAGAGCTG+TGG 0.596197 3:+4069286 None:intergenic
TACGAGTTGAAATCTGCTGC+TGG 0.598487 3:-4070381 MsG0380011721.01.T01:intron
AGTTATTCCCCTCAAAGACA+AGG 0.598527 3:-4072086 MsG0380011721.01.T01:CDS
ATACTGGGGTTTCACAAATG+TGG 0.606217 3:-4069390 MsG0380011721.01.T01:CDS
GGAGAATTCTCTGCACGAAG+AGG 0.611903 3:+4070501 None:intergenic
CTCCTAAACCACCTATGGCA+GGG 0.612594 3:+4069447 None:intergenic
AGAAGTAGAACTGAAGTCAA+AGG 0.614115 3:+4068772 None:intergenic
TCGCTATTGAAACTGTGCTG+AGG 0.616198 3:-4070524 MsG0380011721.01.T01:CDS
TAATACATGAATGGGTGGGC+TGG 0.617551 3:-4072254 None:intergenic
ATGGCAGGGCAGACTACAGT+AGG 0.622344 3:+4069461 None:intergenic
TGCAGCACAATCATTAAACT+CGG 0.626235 3:+4069239 None:intergenic
GCATGTAATACATGAATGGG+TGG 0.632878 3:-4072259 None:intergenic
ATCATGGCAGTTGTAAATGG+AGG 0.633666 3:+4070480 None:intergenic
AGCTATCGTGGACGAGCACG+TGG 0.634226 3:-4067428 MsG0380011721.01.T01:CDS
GCTGTGTGGCGTTGTAAGCG+TGG 0.636334 3:-4069549 MsG0380011721.01.T01:CDS
ACTCGAGGAATGAGCTATCG+TGG 0.638496 3:-4067440 MsG0380011721.01.T01:CDS
CAGGGCAGACTACAGTAGGA+AGG 0.640537 3:+4069465 None:intergenic
GTGGAAGTCACAATAGAGAG+AGG 0.645325 3:-4067313 MsG0380011721.01.T01:CDS
AGAGAGTTGATGGAGGCCAG+GGG 0.648802 3:-4067365 MsG0380011721.01.T01:CDS
ACTGTATCAAATGTCTTACA+GGG 0.656078 3:-4070432 MsG0380011721.01.T01:CDS
CATGTAATACATGAATGGGT+GGG 0.656527 3:-4072258 None:intergenic
GTAACCGGAGGAGTCATGGT+TGG 0.664027 3:-4072155 MsG0380011721.01.T01:CDS
GACTTTCCGATGTCAACACT+AGG 0.669720 3:+4071972 None:intergenic
CTTACCAGAGCATAAGCCTG+GGG 0.679204 3:+4069141 None:intergenic
GAAGGTCCTAGTGTTGACAT+CGG 0.683955 3:-4071978 MsG0380011721.01.T01:CDS
CACGGCTAGAGAGTTGATGG+AGG 0.691369 3:-4067372 MsG0380011721.01.T01:CDS
ACTTGCAGGAATCTATCCAA+CGG 0.700362 3:-4072054 MsG0380011721.01.T01:CDS
TATCCTGGAATATTATACTG+GGG 0.700995 3:-4069404 MsG0380011721.01.T01:CDS
TTACCAGTAGTTAAACGCGG+TGG 0.708980 3:-4067332 MsG0380011721.01.T01:CDS
CAATTACCAGTAGTTAAACG+CGG 0.710350 3:-4067335 MsG0380011721.01.T01:CDS
CATTCCTCGAGTACAAACAG+AGG 0.725332 3:+4067451 None:intergenic
CTGATATTAGGAATGCTGTG+TGG 0.784835 3:-4069563 MsG0380011721.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAAAAAAAAATT+GGG + Chr3:4068023-4068042 None:intergenic 0.0%
!!! TTTTTTTTATAAAAAAAAAT+TGG + Chr3:4068024-4068043 None:intergenic 0.0%
!! AAAAAAAATGAGAATTTAAT+GGG - Chr3:4068036-4068055 MsG0380011721.01.T01:intron 10.0%
!! ATTTCACAAATAAAATAAAA+AGG + Chr3:4068771-4068790 None:intergenic 10.0%
!! TAAAAAAAATGAGAATTTAA+TGG - Chr3:4068035-4068054 MsG0380011721.01.T01:intron 10.0%
!! TAATATTTCAACTTATATAT+TGG - Chr3:4070499-4070518 MsG0380011721.01.T01:CDS 10.0%
!! AAAAGCTCTATAAATAAATA+AGG + Chr3:4068198-4068217 None:intergenic 15.0%
!! AGATTAAGTATTAGATTTAA+GGG + Chr3:4071803-4071822 None:intergenic 15.0%
!! ATAAATTTAGCTAAAACTTA+AGG + Chr3:4067959-4067978 None:intergenic 15.0%
!! ATATTATGGTCATTTAATTA+AGG - Chr3:4067231-4067250 MsG0380011721.01.T01:intron 15.0%
!! ATTAGTAATATTAAGAAGAA+TGG - Chr3:4069056-4069075 MsG0380011721.01.T01:intron 15.0%
!! ATTGTCATTAATTTAATCTT+AGG - Chr3:4071461-4071480 MsG0380011721.01.T01:intron 15.0%
!! CAAGTTCTATAAATAATAAT+TGG + Chr3:4071439-4071458 None:intergenic 15.0%
!! TAAAATAAAAAGGATGAAAA+AGG + Chr3:4068761-4068780 None:intergenic 15.0%
!! TAGATTAAGTATTAGATTTA+AGG + Chr3:4071804-4071823 None:intergenic 15.0%
!! TGACATATATTCTAATATTA+TGG - Chr3:4067217-4067236 MsG0380011721.01.T01:intron 15.0%
!!! AATATTACTAATTTTGGTAT+TGG + Chr3:4069048-4069067 None:intergenic 15.0%
!!! ATTCATATTCAATATTTTAC+AGG - Chr3:4071540-4071559 MsG0380011721.01.T01:intron 15.0%
!!! CTTCTTAATATTACTAATTT+TGG + Chr3:4069054-4069073 None:intergenic 15.0%
!!! TAATTTTTTTTAAGCATGTA+AGG - Chr3:4072022-4072041 MsG0380011721.01.T01:CDS 15.0%
!! AATTCACTTAAATAGTTAGT+TGG + Chr3:4067851-4067870 None:intergenic 20.0%
!! ATAATATTCCAGGATATTTA+AGG + Chr3:4069624-4069643 None:intergenic 20.0%
!! CTAGACATAAATAATCTAAT+GGG + Chr3:4067352-4067371 None:intergenic 20.0%
!! TAATATTCCAGGATATTTAA+GGG + Chr3:4069623-4069642 None:intergenic 20.0%
!! TGCTTAAAATTTAATGTAGA+GGG - Chr3:4068094-4068113 MsG0380011721.01.T01:intron 20.0%
!! TTCATAGTATTAATCAACAT+TGG + Chr3:4068254-4068273 None:intergenic 20.0%
!! TTCTAAATGTGATATTGTTA+GGG - Chr3:4067406-4067425 MsG0380011721.01.T01:CDS 20.0%
!! TTGCTTAAAATTTAATGTAG+AGG - Chr3:4068093-4068112 MsG0380011721.01.T01:intron 20.0%
!! TTTCTAAATGTGATATTGTT+AGG - Chr3:4067405-4067424 MsG0380011721.01.T01:CDS 20.0%
!! TTTGAATAATTCATACAACA+TGG - Chr3:4069239-4069258 MsG0380011721.01.T01:CDS 20.0%
!!! AATTTTCAACCTATTTGTTA+CGG - Chr3:4071853-4071872 MsG0380011721.01.T01:intron 20.0%
!!! TTTAATTTTAGTATCATGCT+TGG + Chr3:4067746-4067765 None:intergenic 20.0%
! AAAAAAATTGGGGTTTATGA+TGG + Chr3:4068012-4068031 None:intergenic 25.0%
! AACAATGACATTGAGAAATT+AGG + Chr3:4071076-4071095 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+AGG - Chr3:4070959-4070978 MsG0380011721.01.T01:intron 25.0%
! AATATCCTGGAATATTATAC+TGG - Chr3:4069626-4069645 MsG0380011721.01.T01:intron 25.0%
! AATATTGGATCAAATAAAGC+AGG - Chr3:4066921-4066940 MsG0380011721.01.T01:intron 25.0%
! ACAGAAAACAATTTGACAAA+TGG - Chr3:4072241-4072260 MsG0380011721.01.T01:CDS 25.0%
! AGAAAAAACTGACAGTTAAA+AGG + Chr3:4071510-4071529 None:intergenic 25.0%
! ATAGTTGTTTGTTCAAATTC+TGG - Chr3:4069965-4069984 MsG0380011721.01.T01:intron 25.0%
! ATATATTGGCAAAATTTCTC+AGG - Chr3:4070513-4070532 MsG0380011721.01.T01:CDS 25.0%
! ATATCCTGGAATATTATACT+GGG - Chr3:4069627-4069646 MsG0380011721.01.T01:intron 25.0%
! ATTCCTAATATCAGGTATAA+AGG + Chr3:4069463-4069482 None:intergenic 25.0%
! ATTGAGAAATTAGGTATGTT+TGG + Chr3:4071067-4071086 None:intergenic 25.0%
! ATTGTGCAATTTCAATTCTT+TGG + Chr3:4068894-4068913 None:intergenic 25.0%
! CAAATAATGAAGATGATGAT+GGG - Chr3:4070636-4070655 MsG0380011721.01.T01:intron 25.0%
! CAGAAAACAATTTGACAAAT+GGG - Chr3:4072242-4072261 MsG0380011721.01.T01:CDS 25.0%
! CCATTAGATTATTTATGTCT+AGG - Chr3:4067350-4067369 MsG0380011721.01.T01:CDS 25.0%
! CCTAGACATAAATAATCTAA+TGG + Chr3:4067353-4067372 None:intergenic 25.0%
! CTTGAAATATATAAAGACCA+GGG + Chr3:4071337-4071356 None:intergenic 25.0%
! GTGATAACAATACTGTAAAA+CGG + Chr3:4068810-4068829 None:intergenic 25.0%
! TATATTGGCAAAATTTCTCA+GGG - Chr3:4070514-4070533 MsG0380011721.01.T01:CDS 25.0%
! TCAAATAATGAAGATGATGA+TGG - Chr3:4070635-4070654 MsG0380011721.01.T01:intron 25.0%
! TCTTGAAATATATAAAGACC+AGG + Chr3:4071338-4071357 None:intergenic 25.0%
! TGACAGAAAAAAATGATGAA+AGG - Chr3:4071397-4071416 MsG0380011721.01.T01:intron 25.0%
! TGATATTTATGTTAATGTGC+AGG - Chr3:4072179-4072198 MsG0380011721.01.T01:CDS 25.0%
! TTGTTATCCGAATACTAATT+TGG - Chr3:4071636-4071655 MsG0380011721.01.T01:intron 25.0%
!! ATTTGAAGATGGGAAATTTT+AGG + Chr3:4067913-4067932 None:intergenic 25.0%
!! CAAATAGGTTGAAAATTTCA+AGG + Chr3:4071850-4071869 None:intergenic 25.0%
!! TCCATTCATATTACTGTTTT+GGG - Chr3:4072132-4072151 MsG0380011721.01.T01:CDS 25.0%
!! TTCCATTCATATTACTGTTT+TGG - Chr3:4072131-4072150 MsG0380011721.01.T01:CDS 25.0%
!! TTGTGTTTCCTTTCTAATTT+TGG - Chr3:4068379-4068398 MsG0380011721.01.T01:intron 25.0%
!! TTGTTTATGTTTGAGTTTCT+TGG - Chr3:4067429-4067448 MsG0380011721.01.T01:CDS 25.0%
!! TTTGATAATCTAACTTTCTG+TGG + Chr3:4072216-4072235 None:intergenic 25.0%
!! TTTTGTGGATTTCTAAATGT+TGG - Chr3:4068424-4068443 MsG0380011721.01.T01:intron 25.0%
!!! AAAGTTAATTTAACTTGTGC+AGG - Chr3:4070199-4070218 MsG0380011721.01.T01:intron 25.0%
!!! ACTTTTAAGACTCAAGATTT+AGG - Chr3:4068853-4068872 MsG0380011721.01.T01:intron 25.0%
!!! ATTTTATTGATTACCATGAG+AGG + Chr3:4070320-4070339 None:intergenic 25.0%
AAAGGGACAAATAAAATGTG+AGG + Chr3:4069098-4069117 None:intergenic 30.0%
AACAGAAGCCAATATAATCA+TGG + Chr3:4068571-4068590 None:intergenic 30.0%
AACTGTATCAAATGTCTTAC+AGG - Chr3:4068599-4068618 MsG0380011721.01.T01:intron 30.0%
AATCGATGAAGAACTATTTC+TGG - Chr3:4070706-4070725 MsG0380011721.01.T01:intron 30.0%
AATGGCACAATTAGGAATTA+AGG - Chr3:4067712-4067731 MsG0380011721.01.T01:intron 30.0%
AATTGAAATTGCACAATCCA+GGG - Chr3:4068897-4068916 MsG0380011721.01.T01:intron 30.0%
ACTGTATCAAATGTCTTACA+GGG - Chr3:4068600-4068619 MsG0380011721.01.T01:intron 30.0%
ATAATCATGGCAGTTGTAAA+TGG + Chr3:4068558-4068577 None:intergenic 30.0%
ATATTGGCAAAATTTCTCAG+GGG - Chr3:4070515-4070534 MsG0380011721.01.T01:CDS 30.0%
CAGATGAAAAACTCTTAAAG+TGG + Chr3:4071897-4071916 None:intergenic 30.0%
CATCATTAATGAGAATCCAT+TGG + Chr3:4067091-4067110 None:intergenic 30.0%
CATTTACTACATACATCCAA+AGG + Chr3:4071313-4071332 None:intergenic 30.0%
CTAATTAACGATTTACCTCT+AGG - Chr3:4069342-4069361 MsG0380011721.01.T01:CDS 30.0%
CTACCTTTATACCTGATATT+AGG - Chr3:4069457-4069476 MsG0380011721.01.T01:CDS 30.0%
CTGGATATAGTCAAAAAACT+TGG + Chr3:4069536-4069555 None:intergenic 30.0%
GTAAAGTGATATATACCTAG+AGG - Chr3:4067880-4067899 MsG0380011721.01.T01:intron 30.0%
GTGTGGTTTACTAGAAATAT+TGG - Chr3:4066906-4066925 MsG0380011721.01.T01:intron 30.0%
TACAACTGCCATGATTATAT+TGG - Chr3:4068560-4068579 MsG0380011721.01.T01:intron 30.0%
TAGGGTCTATAATTGAGAAT+TGG - Chr3:4067507-4067526 MsG0380011721.01.T01:intron 30.0%
TATCCTGGAATATTATACTG+GGG - Chr3:4069628-4069647 MsG0380011721.01.T01:intron 30.0%
TATGAACATACAATACCTAG+AGG + Chr3:4069360-4069379 None:intergenic 30.0%
TCACTTAAATAGTTAGTTGG+TGG + Chr3:4067848-4067867 None:intergenic 30.0%
TTAAAAGAGCCGTAACAAAT+AGG + Chr3:4071865-4071884 None:intergenic 30.0%
TTAAAAGAGTTCCAGGAAAA+GGG - Chr3:4069148-4069167 MsG0380011721.01.T01:CDS 30.0%
! CAATGGATTCTCATTAATGA+TGG - Chr3:4067089-4067108 MsG0380011721.01.T01:intron 30.0%
! CTATGCATTTTTCTTTCTTC+AGG - Chr3:4068456-4068475 MsG0380011721.01.T01:intron 30.0%
! GTATCTCTTTTATCTTCGTA+TGG + Chr3:4069278-4069297 None:intergenic 30.0%
! TAATTCCTAATTGTGCCATT+TGG + Chr3:4067712-4067731 None:intergenic 30.0%
! TCTAGGTATTGTATGTTCAT+AGG - Chr3:4069359-4069378 MsG0380011721.01.T01:CDS 30.0%
!! AATGAGAATTTAATGGGTTC+AGG - Chr3:4068042-4068061 MsG0380011721.01.T01:intron 30.0%
!! AATTCCTAATTGTGCCATTT+GGG + Chr3:4067711-4067730 None:intergenic 30.0%
!! ACCTTGCATATCAGTTTTAT+AGG + Chr3:4067563-4067582 None:intergenic 30.0%
!! ACTATTTCTGGACAAACTTA+AGG - Chr3:4070718-4070737 MsG0380011721.01.T01:intron 30.0%
!! AGCATCTTTTGCTATATAGA+AGG - Chr3:4068226-4068245 MsG0380011721.01.T01:intron 30.0%
!! AGTTTTATAGGGTTTGAGTT+AGG + Chr3:4067551-4067570 None:intergenic 30.0%
!! ATTTTAGGAAAATCACCTCT+AGG + Chr3:4067898-4067917 None:intergenic 30.0%
!! CACATTTTATTTGTCCCTTT+GGG - Chr3:4069098-4069117 MsG0380011721.01.T01:intron 30.0%
!! CCTTGCATATCAGTTTTATA+GGG + Chr3:4067562-4067581 None:intergenic 30.0%
!! TAGGAAGTAGGTTTGTTAAA+TGG - Chr3:4068964-4068983 MsG0380011721.01.T01:intron 30.0%
!! TCACATTTTATTTGTCCCTT+TGG - Chr3:4069097-4069116 MsG0380011721.01.T01:intron 30.0%
!! TGCTATTTCATATGAATGAC+AGG - Chr3:4070388-4070407 MsG0380011721.01.T01:CDS 30.0%
!! TTAATTTAACTTGTGCAGGT+TGG - Chr3:4070203-4070222 MsG0380011721.01.T01:intron 30.0%
!!! ATTGCTACACTTTTTGAGTA+TGG - Chr3:4068688-4068707 MsG0380011721.01.T01:intron 30.0%
!!! CAAGTTTTTTGACTATATCC+AGG - Chr3:4069534-4069553 MsG0380011721.01.T01:CDS 30.0%
!!! CATTTTTAGTCTCTCTAGTT+TGG + Chr3:4068167-4068186 None:intergenic 30.0%
!!! TAGGGTTTGGAGATTTTTTA+GGG - Chr3:4067489-4067508 MsG0380011721.01.T01:intron 30.0%
!!! TTAGGGTTTGGAGATTTTTT+AGG - Chr3:4067488-4067507 MsG0380011721.01.T01:intron 30.0%
!!! TTTCTAATTTTGGCTGGTTT+CGG - Chr3:4068389-4068408 MsG0380011721.01.T01:intron 30.0%
AAACCCCAGTATAATATTCC+AGG + Chr3:4069634-4069653 None:intergenic 35.0%
AACACTGCTTCTATTGTACT+CGG + Chr3:4071979-4071998 None:intergenic 35.0%
AAGCTCAAGTGAGTGTATTT+GGG + Chr3:4071014-4071033 None:intergenic 35.0%
AAGTCAAAACCTTGTCTTTG+AGG + Chr3:4066958-4066977 None:intergenic 35.0%
AGAAGTAGAACTGAAGTCAA+AGG + Chr3:4070263-4070282 None:intergenic 35.0%
AGAAGTCTCATTAGACTTCT+CGG + Chr3:4071275-4071294 None:intergenic 35.0%
AGCTTATGCAGATAGCTAAT+AGG + Chr3:4070920-4070939 None:intergenic 35.0%
AGTACAGTGTAGTTCAATAG+TGG + Chr3:4070020-4070039 None:intergenic 35.0%
AGTCAAAACCTTGTCTTTGA+GGG + Chr3:4066957-4066976 None:intergenic 35.0%
ATACAACATGGAAACTGTGT+GGG - Chr3:4069251-4069270 MsG0380011721.01.T01:CDS 35.0%
ATCATTGCCCTTAAATATCC+TGG - Chr3:4069613-4069632 MsG0380011721.01.T01:intron 35.0%
ATCCACCTGGTAAAAGAAAT+TGG - Chr3:4070592-4070611 MsG0380011721.01.T01:intron 35.0%
ATGTATGTAGTAAATGTCCC+TGG - Chr3:4071317-4071336 MsG0380011721.01.T01:intron 35.0%
CAAGCTTATAAGCACTACTT+GGG - Chr3:4067593-4067612 MsG0380011721.01.T01:intron 35.0%
CAATTACCAGTAGTTAAACG+CGG - Chr3:4071697-4071716 MsG0380011721.01.T01:intron 35.0%
CATATGAAATAGCAGAACAG+TGG + Chr3:4070382-4070401 None:intergenic 35.0%
CATGTCGAAATACTATCTGA+AGG - Chr3:4071118-4071137 MsG0380011721.01.T01:intron 35.0%
CCCTATAAAACTGATATGCA+AGG - Chr3:4067559-4067578 MsG0380011721.01.T01:intron 35.0%
CTATCGTAGTTTGACTGTTA+GGG - Chr3:4067471-4067490 MsG0380011721.01.T01:CDS 35.0%
CTTCAGATAGTATTTCGACA+TGG + Chr3:4071120-4071139 None:intergenic 35.0%
CTTGATGGGATATTGACATA+TGG - Chr3:4071229-4071248 MsG0380011721.01.T01:intron 35.0%
GAAACCAGCCAAAATTAGAA+AGG + Chr3:4068390-4068409 None:intergenic 35.0%
GAACATGTTAAAAGAGTTCC+AGG - Chr3:4069141-4069160 MsG0380011721.01.T01:intron 35.0%
GAATTGAAATTGCACAATCC+AGG - Chr3:4068896-4068915 MsG0380011721.01.T01:intron 35.0%
GACGAAGATGATTTCTTGAT+GGG - Chr3:4071215-4071234 MsG0380011721.01.T01:intron 35.0%
GACTATATCCAGGAGAAATT+TGG - Chr3:4069544-4069563 MsG0380011721.01.T01:CDS 35.0%
GATAACCATCAATCACACAA+TGG + Chr3:4070441-4070460 None:intergenic 35.0%
GCAGTCTTAACAACAAAAGA+TGG + Chr3:4070787-4070806 None:intergenic 35.0%
GCCCAAAACAGTAATATGAA+TGG + Chr3:4072136-4072155 None:intergenic 35.0%
GGAAAGAATTATGCTCAGTT+TGG + Chr3:4072115-4072134 None:intergenic 35.0%
GGTCTATAATTGAGAATTGG+CGG - Chr3:4067510-4067529 MsG0380011721.01.T01:intron 35.0%
GTATCTTCGAAGAGAGTTAT+AGG - Chr3:4069182-4069201 MsG0380011721.01.T01:CDS 35.0%
GTTAAAAGAGTTCCAGGAAA+AGG - Chr3:4069147-4069166 MsG0380011721.01.T01:CDS 35.0%
GTTATCAATTCAGCAATTCC+TGG - Chr3:4069849-4069868 MsG0380011721.01.T01:intron 35.0%
TAAAAGAGTTCCAGGAAAAG+GGG - Chr3:4069149-4069168 MsG0380011721.01.T01:CDS 35.0%
TAACAAAATGAGTCCTGACA+TGG - Chr3:4070413-4070432 MsG0380011721.01.T01:CDS 35.0%
TAAGCTCAAGTGAGTGTATT+TGG + Chr3:4071015-4071034 None:intergenic 35.0%
TATCTGTGAAAATGAGTCCA+TGG - Chr3:4068306-4068325 MsG0380011721.01.T01:intron 35.0%
TATTGGCAAAATTTCTCAGG+GGG - Chr3:4070516-4070535 MsG0380011721.01.T01:CDS 35.0%
TCAAGCTTATAAGCACTACT+TGG - Chr3:4067592-4067611 MsG0380011721.01.T01:intron 35.0%
TCAGACTTCTATAAGATCTG+CGG - Chr3:4069019-4069038 MsG0380011721.01.T01:intron 35.0%
TCCTTCATTATGACGAACTA+TGG - Chr3:4071761-4071780 MsG0380011721.01.T01:intron 35.0%
TCGAAGAGAGTTATAGGAAA+AGG - Chr3:4069188-4069207 MsG0380011721.01.T01:CDS 35.0%
TGAAAATTTCAAGGAGATGC+AGG + Chr3:4071841-4071860 None:intergenic 35.0%
TGACATATGGTGACATTAGA+AGG - Chr3:4071242-4071261 MsG0380011721.01.T01:intron 35.0%
TGACGAAGATGATTTCTTGA+TGG - Chr3:4071214-4071233 MsG0380011721.01.T01:intron 35.0%
TGCAGCACAATCATTAAACT+CGG + Chr3:4069796-4069815 None:intergenic 35.0%
TTAATGTAGAGGGACTTCAT+TGG - Chr3:4068104-4068123 MsG0380011721.01.T01:intron 35.0%
TTGAATACTCAGATGTCGAT+TGG - Chr3:4069306-4069325 MsG0380011721.01.T01:CDS 35.0%
TTTAATGATTGTGCTGCAGT+TGG - Chr3:4069798-4069817 MsG0380011721.01.T01:intron 35.0%
! AATTATTCAACCCCTTTTCC+TGG + Chr3:4069162-4069181 None:intergenic 35.0%
! AGGTATTGTATGTTCATAGG+AGG - Chr3:4069362-4069381 MsG0380011721.01.T01:CDS 35.0%
! ATCCTTTTGATACCTGTAAC+CGG - Chr3:4066862-4066881 MsG0380011721.01.T01:intron 35.0%
! ATTCAAGCTGCAGTTACTTT+AGG - Chr3:4067009-4067028 MsG0380011721.01.T01:intron 35.0%
! ATTGAGAATTGGCGGTTTTA+TGG - Chr3:4067518-4067537 MsG0380011721.01.T01:intron 35.0%
! TCTTTGAGAGTTACAGATGA+TGG + Chr3:4071146-4071165 None:intergenic 35.0%
! TGAATACTCAGATGTCGATT+GGG - Chr3:4069307-4069326 MsG0380011721.01.T01:CDS 35.0%
! TGTTTGAGTTTCTTGGTTAC+CGG - Chr3:4067436-4067455 MsG0380011721.01.T01:CDS 35.0%
!! AATGAAGATGATGATGGGAA+TGG - Chr3:4070641-4070660 MsG0380011721.01.T01:intron 35.0%
!! AATTGGCGGTTTTATGGTTT+GGG - Chr3:4067524-4067543 MsG0380011721.01.T01:intron 35.0%
!! ATAGACATGCTTTAGGAAGT+AGG - Chr3:4068952-4068971 MsG0380011721.01.T01:intron 35.0%
!! GTTTCCTTTCTAATTTTGGC+TGG - Chr3:4068383-4068402 MsG0380011721.01.T01:intron 35.0%
!! TTCATCGATTTCTTCAAGCT+CGG + Chr3:4070696-4070715 None:intergenic 35.0%
!!! ACACTTTTTGAGTATGGTTC+AGG - Chr3:4068694-4068713 MsG0380011721.01.T01:intron 35.0%
AACTCAATTAGCAGGTGCTA+AGG - Chr3:4069717-4069736 MsG0380011721.01.T01:intron 40.0%
ACAGAACATAGCATCCCAAA+GGG + Chr3:4069115-4069134 None:intergenic 40.0%
ACAGCAGTGTTGTCAAAAAG+TGG + Chr3:4070106-4070125 None:intergenic 40.0%
ACGATAGCATTGCATCAATC+CGG + Chr3:4067458-4067477 None:intergenic 40.0%
ACTTGCAGGAATCTATCCAA+CGG - Chr3:4066978-4066997 MsG0380011721.01.T01:intron 40.0%
AGGAATCTATCCAACGGTAA+AGG - Chr3:4066984-4067003 MsG0380011721.01.T01:intron 40.0%
AGTGTATTTGGGAGAGCTTA+TGG + Chr3:4071003-4071022 None:intergenic 40.0%
AGTTATTCCCCTCAAAGACA+AGG - Chr3:4066946-4066965 MsG0380011721.01.T01:intron 40.0%
ATACTGGGGTTTCACAAATG+TGG - Chr3:4069642-4069661 MsG0380011721.01.T01:intron 40.0%
ATCATGGCAGTTGTAAATGG+AGG + Chr3:4068555-4068574 None:intergenic 40.0%
ATGTCATTGTTCCTCTTGTC+AGG - Chr3:4071085-4071104 MsG0380011721.01.T01:intron 40.0%
ATTGACGACACAATGCTTCA+CGG + Chr3:4069930-4069949 None:intergenic 40.0%
CACACAGCATTCCTAATATC+AGG + Chr3:4069471-4069490 None:intergenic 40.0%
CATACAACATGGAAACTGTG+TGG - Chr3:4069250-4069269 MsG0380011721.01.T01:CDS 40.0%
CTGATATTAGGAATGCTGTG+TGG - Chr3:4069469-4069488 MsG0380011721.01.T01:CDS 40.0%
CTGTGAAGTATGTCAGTTGT+AGG - Chr3:4070122-4070141 MsG0380011721.01.T01:intron 40.0%
CTTAAGGATTCTGCAAGATG+CGG + Chr3:4067943-4067962 None:intergenic 40.0%
GCATGCTATAGACATGCTTT+AGG - Chr3:4068945-4068964 MsG0380011721.01.T01:intron 40.0%
GCCATAGTTCGTCATAATGA+AGG + Chr3:4071765-4071784 None:intergenic 40.0%
GCTATCGTAGTTTGACTGTT+AGG - Chr3:4067470-4067489 MsG0380011721.01.T01:CDS 40.0%
GCTATCTGCATAAGCTATCT+CGG - Chr3:4070924-4070943 MsG0380011721.01.T01:intron 40.0%
GGATGCTATGTTCTGTATCT+TGG - Chr3:4069119-4069138 MsG0380011721.01.T01:intron 40.0%
GGCACAATTAGGAATTAAGG+AGG - Chr3:4067715-4067734 MsG0380011721.01.T01:intron 40.0%
GTAGTTTGACTGTTAGGGTT+TGG - Chr3:4067476-4067495 MsG0380011721.01.T01:intron 40.0%
GTCAAAACCTTGTCTTTGAG+GGG + Chr3:4066956-4066975 None:intergenic 40.0%
GTGGAAGAAATTCTACGTAC+TGG - Chr3:4069661-4069680 MsG0380011721.01.T01:intron 40.0%
GTGGTTGCAAATTGCAATGA+AGG - Chr3:4067682-4067701 MsG0380011721.01.T01:intron 40.0%
TACAGAACATAGCATCCCAA+AGG + Chr3:4069116-4069135 None:intergenic 40.0%
TAGAATACTGCTTCCTCTCA+TGG - Chr3:4070304-4070323 MsG0380011721.01.T01:intron 40.0%
TCCGAATACTAATTTGGCCA+CGG - Chr3:4071642-4071661 MsG0380011721.01.T01:intron 40.0%
TGAGTTAGAAGCCATATTCC+AGG + Chr3:4069703-4069722 None:intergenic 40.0%
TGGCTTCTAACTCAATTAGC+AGG - Chr3:4069709-4069728 MsG0380011721.01.T01:intron 40.0%
TGGTAAAAGAAATTGGCGAG+AGG - Chr3:4070599-4070618 MsG0380011721.01.T01:intron 40.0%
TGGTTCCATTGTGTGATTGA+TGG - Chr3:4070433-4070452 MsG0380011721.01.T01:CDS 40.0%
TGTCTAGGCATTCATTGAGA+AGG - Chr3:4067365-4067384 MsG0380011721.01.T01:CDS 40.0%
TTAAGGATTCTGCAAGATGC+GGG + Chr3:4067942-4067961 None:intergenic 40.0%
TTCATTCTGTTAGGTGTCAG+AGG + Chr3:4067655-4067674 None:intergenic 40.0%
TTGAGTTTGTACTCACGCAA+GGG - Chr3:4067310-4067329 MsG0380011721.01.T01:CDS 40.0%
! AAAATAGCACTTGTTGCAGC+TGG - Chr3:4067129-4067148 MsG0380011721.01.T01:intron 40.0%
! AGGCACTGTAAAAGCTGATT+GGG + Chr3:4068628-4068647 None:intergenic 40.0%
! CTCTCTAGTTTGGACAAAGA+GGG + Chr3:4068157-4068176 None:intergenic 40.0%
! GGTTTAGAACTCTGCATTGT+TGG - Chr3:4070662-4070681 MsG0380011721.01.T01:intron 40.0%
! GTGGTGAGACTTTAAGCTTT+TGG + Chr3:4067829-4067848 None:intergenic 40.0%
! TCTCGCCAATTTCTTTTACC+AGG + Chr3:4070600-4070619 None:intergenic 40.0%
! TCTCTCTAGTTTGGACAAAG+AGG + Chr3:4068158-4068177 None:intergenic 40.0%
! TTTAGAGCAGACGTGATTTG+AGG + Chr3:4067806-4067825 None:intergenic 40.0%
!! ATTGGCGGTTTTATGGTTTG+GGG - Chr3:4067525-4067544 MsG0380011721.01.T01:intron 40.0%
!! GAATTGGCGGTTTTATGGTT+TGG - Chr3:4067523-4067542 MsG0380011721.01.T01:intron 40.0%
!! TTAACTTGTGCAGGTTGGAA+TGG - Chr3:4070208-4070227 MsG0380011721.01.T01:intron 40.0%
!! TTAGGTACTGGCTGTTCATT+GGG - Chr3:4067027-4067046 MsG0380011721.01.T01:intron 40.0%
!! TTTAGGTACTGGCTGTTCAT+TGG - Chr3:4067026-4067045 MsG0380011721.01.T01:intron 40.0%
!!! CAAGGTTTTGACTTACTTGC+AGG - Chr3:4066964-4066983 MsG0380011721.01.T01:intron 40.0%
AAAATTTCTCAGGGGGCTGT+TGG - Chr3:4070523-4070542 MsG0380011721.01.T01:CDS 45.0%
AAATTTCTCAGGGGGCTGTT+GGG - Chr3:4070524-4070543 MsG0380011721.01.T01:CDS 45.0%
AACACTGCCTCGAGAAGATA+TGG + Chr3:4067619-4067638 None:intergenic 45.0%
AAGCTATCTCGGAGAGCTAA+TGG - Chr3:4070935-4070954 MsG0380011721.01.T01:intron 45.0%
ACCAGCTCGTTCATTCTGTT+AGG + Chr3:4067664-4067683 None:intergenic 45.0%
ACCTAACAGAATGAACGAGC+TGG - Chr3:4067660-4067679 MsG0380011721.01.T01:intron 45.0%
ATGCTTGACAATGCAGTGCA+AGG + Chr3:4067268-4067287 None:intergenic 45.0%
ATGGACATACTTCCAAGCTC+TGG - Chr3:4068325-4068344 MsG0380011721.01.T01:intron 45.0%
ATGTCAACACTAGGACCTTC+AGG + Chr3:4067054-4067073 None:intergenic 45.0%
ATTGCCACAGCTCTTTGCAA+GGG - Chr3:4069742-4069761 MsG0380011721.01.T01:intron 45.0%
CAATGACTCGTTTGGTTGCT+TGG - Chr3:4069506-4069525 MsG0380011721.01.T01:CDS 45.0%
CACGTATCACAGAACAGTAG+TGG - Chr3:4070044-4070063 MsG0380011721.01.T01:intron 45.0%
CATTCCTCGAGTACAAACAG+AGG + Chr3:4071584-4071603 None:intergenic 45.0%
CGAGATTACTATACCATCCC+TGG + Chr3:4068917-4068936 None:intergenic 45.0%
CGGGAGTAGCATTTGAAGAT+GGG + Chr3:4067923-4067942 None:intergenic 45.0%
CTCCGGTTACAGGTATCAAA+AGG + Chr3:4066867-4066886 None:intergenic 45.0%
CTTGAGTTTGTACTCACGCA+AGG - Chr3:4067309-4067328 MsG0380011721.01.T01:CDS 45.0%
GAAATTGCACAATCCAGGGA+TGG - Chr3:4068901-4068920 MsG0380011721.01.T01:intron 45.0%
GAACTCTGCATTGTTGGAGA+TGG - Chr3:4070668-4070687 MsG0380011721.01.T01:intron 45.0%
GAATGTCACTGTCGACATTG+AGG - Chr3:4070144-4070163 MsG0380011721.01.T01:intron 45.0%
GACTTTCCGATGTCAACACT+AGG + Chr3:4067063-4067082 None:intergenic 45.0%
GAGAGGAAGCGAAGAATTGT+CGG - Chr3:4071736-4071755 MsG0380011721.01.T01:intron 45.0%
GCAACCCAAATGGCACAATT+AGG - Chr3:4067704-4067723 MsG0380011721.01.T01:intron 45.0%
GCACTGCATTGTCAAGCATA+GGG - Chr3:4067269-4067288 MsG0380011721.01.T01:CDS 45.0%
GCAGATTTCAACTCGTACTC+AGG + Chr3:4068648-4068667 None:intergenic 45.0%
GCCGTGGCCAAATTAGTATT+CGG + Chr3:4071646-4071665 None:intergenic 45.0%
GCTTGAATAGCCTTTACCGT+TGG + Chr3:4066997-4067016 None:intergenic 45.0%
GTGGAAGTCACAATAGAGAG+AGG - Chr3:4071719-4071738 MsG0380011721.01.T01:intron 45.0%
GTTCCCTCAGTGACAAATCA+GGG - Chr3:4070558-4070577 MsG0380011721.01.T01:intron 45.0%
GTTTCCTCTGTTTGTACTCG+AGG - Chr3:4071577-4071596 MsG0380011721.01.T01:intron 45.0%
GTTTGGACAAAGAGGGACTT+TGG + Chr3:4068150-4068169 None:intergenic 45.0%
TAACAGAATGAACGAGCTGG+TGG - Chr3:4067663-4067682 MsG0380011721.01.T01:intron 45.0%
TAAGAGCGACTCAGATCCTT+TGG - Chr3:4071294-4071313 MsG0380011721.01.T01:intron 45.0%
TAGGAAGGCCAAATTTCTCC+TGG + Chr3:4069555-4069574 None:intergenic 45.0%
TATTGCCACAGCTCTTTGCA+AGG - Chr3:4069741-4069760 MsG0380011721.01.T01:intron 45.0%
TCACACAATGGAACCATGTC+AGG + Chr3:4070429-4070448 None:intergenic 45.0%
TCGCTATTGAAACTGTGCTG+AGG - Chr3:4068508-4068527 MsG0380011721.01.T01:intron 45.0%
TCTGTTAGGTGTCAGAGGAT+GGG + Chr3:4067650-4067669 None:intergenic 45.0%
TGCAATGAAGGCAACCCAAA+TGG - Chr3:4067694-4067713 MsG0380011721.01.T01:intron 45.0%
TGCACTGCATTGTCAAGCAT+AGG - Chr3:4067268-4067287 MsG0380011721.01.T01:CDS 45.0%
TGCAGAGATTGGGTGATACA+TGG - Chr3:4066833-4066852 MsG0380011721.01.T01:CDS 45.0%
TGCTTCACGGGTAGTAAAGT+TGG + Chr3:4069917-4069936 None:intergenic 45.0%
TGGCTTCGTTTGCAGAGATT+GGG - Chr3:4066823-4066842 MsG0380011721.01.T01:CDS 45.0%
TGTCGACATTGAGGCTGATT+TGG - Chr3:4070153-4070172 MsG0380011721.01.T01:intron 45.0%
TTAAGCTAGAAGCCAGAGCT+TGG + Chr3:4068340-4068359 None:intergenic 45.0%
TTACCAGTAGTTAAACGCGG+TGG - Chr3:4071700-4071719 MsG0380011721.01.T01:intron 45.0%
TTCCCTCAGTGACAAATCAG+GGG - Chr3:4070559-4070578 MsG0380011721.01.T01:intron 45.0%
TTCCTCTTGTCAGGTTTCTC+AGG - Chr3:4071094-4071113 MsG0380011721.01.T01:intron 45.0%
TTCTGTTAGGTGTCAGAGGA+TGG + Chr3:4067651-4067670 None:intergenic 45.0%
TTGACGACACAATGCTTCAC+GGG + Chr3:4069929-4069948 None:intergenic 45.0%
! AATGCAGTGCAAGGCATCAA+AGG + Chr3:4067259-4067278 None:intergenic 45.0%
! AGAGCTTGGAAGTATGTCCA+TGG + Chr3:4068326-4068345 None:intergenic 45.0%
! CAGGCACTGTAAAAGCTGAT+TGG + Chr3:4068629-4068648 None:intergenic 45.0%
! CGCCAATTTCTTTTACCAGG+TGG + Chr3:4070597-4070616 None:intergenic 45.0%
! CTTTTGATACCTGTAACCGG+AGG - Chr3:4066865-4066884 MsG0380011721.01.T01:intron 45.0%
! GCTGCAGTTACTTTAGGTAC+TGG - Chr3:4067015-4067034 MsG0380011721.01.T01:intron 45.0%
! TACGAGTTGAAATCTGCTGC+TGG - Chr3:4068651-4068670 MsG0380011721.01.T01:intron 45.0%
! TTCCCCTGATTTGTCACTGA+GGG + Chr3:4070564-4070583 None:intergenic 45.0%
!! CTGTTTTGGGCATCAACTCT+TGG - Chr3:4072145-4072164 MsG0380011721.01.T01:CDS 45.0%
!! GAAGGTCCTAGTGTTGACAT+CGG - Chr3:4067054-4067073 MsG0380011721.01.T01:intron 45.0%
!!! CGGAGTACGGGTTTATTTTG+TGG - Chr3:4068409-4068428 MsG0380011721.01.T01:intron 45.0%
!!! TTTTGGCTGGTTTCGGAGTA+CGG - Chr3:4068396-4068415 MsG0380011721.01.T01:intron 45.0%
!!! TTTTTTATAAAAAAAAATTG+GGG + Chr3:4068022-4068041 None:intergenic 5.0%
AAGCGTGGCAATGACTCGTT+TGG - Chr3:4069498-4069517 MsG0380011721.01.T01:CDS 50.0%
ACGAACTATGGCACTGTCTC+AGG - Chr3:4071773-4071792 MsG0380011721.01.T01:intron 50.0%
ACTCGAGGAATGAGCTATCG+TGG - Chr3:4071592-4071611 MsG0380011721.01.T01:intron 50.0%
ACTTGGGCCATATCTTCTCG+AGG - Chr3:4067609-4067628 MsG0380011721.01.T01:intron 50.0%
AGTTTGTACTCACGCAAGGG+CGG - Chr3:4067313-4067332 MsG0380011721.01.T01:CDS 50.0%
CAATCTCTGCAAACGAAGCC+AGG + Chr3:4066824-4066843 None:intergenic 50.0%
CCATAGGTGGTTTAGGAGCT+GGG - Chr3:4069590-4069609 MsG0380011721.01.T01:intron 50.0%
CTCAGTGACAAATCAGGGGA+AGG - Chr3:4070563-4070582 MsG0380011721.01.T01:intron 50.0%
CTCCTAAACCACCTATGGCA+GGG + Chr3:4069588-4069607 None:intergenic 50.0%
CTGGCTTCGTTTGCAGAGAT+TGG - Chr3:4066822-4066841 MsG0380011721.01.T01:CDS 50.0%
CTTACCAGAGCATAAGCCTG+GGG + Chr3:4069894-4069913 None:intergenic 50.0%
CTTCCACCGCGTTTAACTAC+TGG + Chr3:4071706-4071725 None:intergenic 50.0%
GCAGCAGCTGGAATTTCTTC+AGG - Chr3:4067153-4067172 MsG0380011721.01.T01:intron 50.0%
GCATTGTCAAGCATAGGGCT+TGG - Chr3:4067274-4067293 MsG0380011721.01.T01:CDS 50.0%
GCGGGAGTAGCATTTGAAGA+TGG + Chr3:4067924-4067943 None:intergenic 50.0%
GCGTGAGTACAAACTCAAGC+AGG + Chr3:4067308-4067327 None:intergenic 50.0%
GCTTACCAGAGCATAAGCCT+GGG + Chr3:4069895-4069914 None:intergenic 50.0%
GGAGAATTCTCTGCACGAAG+AGG + Chr3:4068534-4068553 None:intergenic 50.0%
GGTTCCCTCAGTGACAAATC+AGG - Chr3:4070557-4070576 MsG0380011721.01.T01:CDS 50.0%
GTCATGGTTGGCATGATGTG+TGG - Chr3:4066889-4066908 MsG0380011721.01.T01:intron 50.0%
GTGCTTCTGCTCCTGGAATA+TGG - Chr3:4069689-4069708 MsG0380011721.01.T01:intron 50.0%
GTGTCGTCAATTGTAGCTCG+TGG - Chr3:4069939-4069958 MsG0380011721.01.T01:intron 50.0%
TGGTAATTGCTTAACGCCCC+TGG + Chr3:4071686-4071705 None:intergenic 50.0%
TGTGCAACAGCAGCATTTCC+AGG + Chr3:4069870-4069889 None:intergenic 50.0%
! CTACCAGCACACAGTTTTGC+TGG + Chr3:4071193-4071212 None:intergenic 50.0%
! CTTCCCCTGATTTGTCACTG+AGG + Chr3:4070565-4070584 None:intergenic 50.0%
!! TAGAGAGTTGATGGAGGCCA+GGG - Chr3:4071666-4071685 MsG0380011721.01.T01:intron 50.0%
!! TTTGGCTGGTTTCGGAGTAC+GGG - Chr3:4068397-4068416 MsG0380011721.01.T01:intron 50.0%
ACAACCCCAGGCTTATGCTC+TGG - Chr3:4069887-4069906 MsG0380011721.01.T01:intron 55.0%
ACAGCTCTTTGCAAGGGCTC+TGG - Chr3:4069748-4069767 MsG0380011721.01.T01:intron 55.0%
ACCATGACTCCTCCGGTTAC+AGG + Chr3:4066877-4066896 None:intergenic 55.0%
ACCTGTAACCGGAGGAGTCA+TGG - Chr3:4066873-4066892 MsG0380011721.01.T01:intron 55.0%
ACTGTAGTCTGCCCTGCCAT+AGG - Chr3:4069574-4069593 MsG0380011721.01.T01:CDS 55.0%
AGAGCCCTTGCAAAGAGCTG+TGG + Chr3:4069749-4069768 None:intergenic 55.0%
ATCGGAAAGTCGTGCGCCAA+TGG - Chr3:4067072-4067091 MsG0380011721.01.T01:intron 55.0%
ATGGCAGGGCAGACTACAGT+AGG + Chr3:4069574-4069593 None:intergenic 55.0%
CAGCCAGCAAAACTGTGTGC+TGG - Chr3:4071187-4071206 MsG0380011721.01.T01:intron 55.0%
CAGCTCTTTGCAAGGGCTCT+GGG - Chr3:4069749-4069768 MsG0380011721.01.T01:intron 55.0%
CAGGGCAGACTACAGTAGGA+AGG + Chr3:4069570-4069589 None:intergenic 55.0%
CATGCCAACCATGACTCCTC+CGG + Chr3:4066884-4066903 None:intergenic 55.0%
CCCAGCTCCTAAACCACCTA+TGG + Chr3:4069593-4069612 None:intergenic 55.0%
CTCCATCAACTCTCTAGCCG+TGG + Chr3:4071662-4071681 None:intergenic 55.0%
GCCATAGGTGGTTTAGGAGC+TGG - Chr3:4069589-4069608 MsG0380011721.01.T01:intron 55.0%
GCTCCTAAACCACCTATGGC+AGG + Chr3:4069589-4069608 None:intergenic 55.0%
GGCCTGAGAAACCTGACAAG+AGG + Chr3:4071099-4071118 None:intergenic 55.0%
GGCTGTTCATTGGGTCCTGA+AGG - Chr3:4067036-4067055 MsG0380011721.01.T01:intron 55.0%
GGCTTACCAGAGCATAAGCC+TGG + Chr3:4069896-4069915 None:intergenic 55.0%
GGCTTCAATGCAGCAGTTGC+AGG - Chr3:4068477-4068496 MsG0380011721.01.T01:intron 55.0%
GTAACCGGAGGAGTCATGGT+TGG - Chr3:4066877-4066896 MsG0380011721.01.T01:intron 55.0%
TGCCCTGCCATAGGTGGTTT+AGG - Chr3:4069583-4069602 MsG0380011721.01.T01:intron 55.0%
!! AGAGAGTTGATGGAGGCCAG+GGG - Chr3:4071667-4071686 MsG0380011721.01.T01:intron 55.0%
!! CACGGCTAGAGAGTTGATGG+AGG - Chr3:4071660-4071679 MsG0380011721.01.T01:intron 55.0%
!! CTAGAGAGTTGATGGAGGCC+AGG - Chr3:4071665-4071684 MsG0380011721.01.T01:intron 55.0%
!! GCAGTTGGTGCTGTGTTTGG+AGG - Chr3:4069813-4069832 MsG0380011721.01.T01:intron 55.0%
!! GCTGCAGTTGGTGCTGTGTT+TGG - Chr3:4069810-4069829 MsG0380011721.01.T01:intron 55.0%
!! GGAAAGAGTGCTTCTGCTCC+TGG - Chr3:4069682-4069701 MsG0380011721.01.T01:intron 55.0%
!! TGGGCTGGTACTCCGAATGA+GGG - Chr3:4066793-4066812 MsG0380011721.01.T01:CDS 55.0%
AGCCAGGCAGCACCCTCATT+CGG + Chr3:4066808-4066827 None:intergenic 60.0%
AGCTATCGTGGACGAGCACG+TGG - Chr3:4071604-4071623 MsG0380011721.01.T01:intron 60.0%
GCTGTGTGGCGTTGTAAGCG+TGG - Chr3:4069483-4069502 MsG0380011721.01.T01:CDS 60.0%
GGCCACGGCTAGAGAGTTGA+TGG - Chr3:4071657-4071676 MsG0380011721.01.T01:intron 60.0%
GGGAAGGAGAGTGATCCACC+TGG - Chr3:4070579-4070598 MsG0380011721.01.T01:intron 60.0%
GTAGTCTGCCCTGCCATAGG+TGG - Chr3:4069577-4069596 MsG0380011721.01.T01:CDS 60.0%
TGCTGCTGTTGCACAACCCC+AGG - Chr3:4069875-4069894 MsG0380011721.01.T01:intron 60.0%
!! AAGGGCTCTGGGCTTGTAGG+TGG - Chr3:4069760-4069779 MsG0380011721.01.T01:intron 60.0%
!! GGGCTGTTGGGCTGGCAATT+GGG - Chr3:4070536-4070555 MsG0380011721.01.T01:CDS 60.0%
!! GTGGGCTGGTACTCCGAATG+AGG - Chr3:4066792-4066811 MsG0380011721.01.T01:CDS 60.0%
!! TGCAAGGGCTCTGGGCTTGT+AGG - Chr3:4069757-4069776 MsG0380011721.01.T01:intron 60.0%
GTTGCAGCTGGTGCAGCAGC+TGG - Chr3:4067141-4067160 MsG0380011721.01.T01:intron 65.0%
TTCTCAGGGGGCTGTTGGGC+TGG - Chr3:4070528-4070547 MsG0380011721.01.T01:CDS 65.0%
!! CTCCGAATGAGGGTGCTGCC+TGG - Chr3:4066803-4066822 MsG0380011721.01.T01:CDS 65.0%
!! GGGGCTGTTGGGCTGGCAAT+TGG - Chr3:4070535-4070554 MsG0380011721.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 4066784 4072270 4066784 ID=MsG0380011721.01;Name=MsG0380011721.01
Chr3 mRNA 4066784 4072270 4066784 ID=MsG0380011721.01.T01;Parent=MsG0380011721.01;Name=MsG0380011721.01.T01;_AED=0.33;_eAED=0.35;_QI=0|0.42|0.75|1|0.42|0.25|8|0|494
Chr3 exon 4066784 4066880 4066784 ID=MsG0380011721.01.T01:exon:2094;Parent=MsG0380011721.01.T01
Chr3 exon 4067260 4067492 4067260 ID=MsG0380011721.01.T01:exon:2093;Parent=MsG0380011721.01.T01
Chr3 exon 4068729 4068833 4068729 ID=MsG0380011721.01.T01:exon:2092;Parent=MsG0380011721.01.T01
Chr3 exon 4068907 4068916 4068907 ID=MsG0380011721.01.T01:exon:2091;Parent=MsG0380011721.01.T01
Chr3 exon 4069146 4069599 4069146 ID=MsG0380011721.01.T01:exon:2090;Parent=MsG0380011721.01.T01
Chr3 exon 4070382 4070576 4070382 ID=MsG0380011721.01.T01:exon:2089;Parent=MsG0380011721.01.T01
Chr3 exon 4071880 4072270 4071880 ID=MsG0380011721.01.T01:exon:2088;Parent=MsG0380011721.01.T01
Chr3 CDS 4071880 4072270 4071880 ID=MsG0380011721.01.T01:cds;Parent=MsG0380011721.01.T01
Chr3 CDS 4070382 4070576 4070382 ID=MsG0380011721.01.T01:cds;Parent=MsG0380011721.01.T01
Chr3 CDS 4069146 4069599 4069146 ID=MsG0380011721.01.T01:cds;Parent=MsG0380011721.01.T01
Chr3 CDS 4068907 4068916 4068907 ID=MsG0380011721.01.T01:cds;Parent=MsG0380011721.01.T01
Chr3 CDS 4068729 4068833 4068729 ID=MsG0380011721.01.T01:cds;Parent=MsG0380011721.01.T01
Chr3 CDS 4067260 4067492 4067260 ID=MsG0380011721.01.T01:cds;Parent=MsG0380011721.01.T01
Chr3 CDS 4066784 4066880 4066784 ID=MsG0380011721.01.T01:cds;Parent=MsG0380011721.01.T01
Gene Sequence

>MsG0380011721.01.T01

ATGAATGGGTGGGCTGGTACTCCGAATGAGGGTGCTGCCTGGCTTCGTTTGCAGAGATTGGGTGATACATGGCATAGAATCCTTTTGATACCTGTAACCGGAGGAGTCATGGTTGGCATGATGTGTGGTTTACTAGAAATATTGGATCAAATAAAGCAGGCAAGTTATTCCCCTCAAAGACAAGGTTTTGACTTACTTGCAGGAATCTATCCAACGGTAAAGGCTATTCAAGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGTCCTAGTGTTGACATCGGAAAGTCGTGCGCCAATGGATTCTCATTAATGATGGAAAACAATAGAGAAAGAAAAATAGCACTTGTTGCAGCTGGTGCAGCAGCTGGAATTTCTTCAGGCTTCAATGCAGCAGTTGCAGGTTGTTTTTTCGCTATTGAAACTGTGCTGAGGCCTCTTCGTGCAGAGAATTCTCCTCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATTTCATCAACTGTATCAAATGTCTTACAGGGAACCCAATCAGCTTTTACAGTGCCTGAGTACGAGTTGAAATCTGCTGCTGAGCTACCTTTATACCTGATATTAGGAATGCTGTGTGGCGTTGTAAGCGTGGCAATGACTCGTTTGGTTGCTTGGTTCACCAAGTTTTTTGACTATATCCAGGAGAAATTTGGCCTTCCTACTGTAGTCTGCCCTGCCATAGGTGGTTTAGGAGCTGGGATCATTGCCCTTAAATATCCTGGAATATTATACTGGGGTTTCACAAATGTGGAAGAAATTCTACGTACTGGAAAGAGTGCTTCTGCTCCTGGAATATGGCTTCTAACTCAATTAGCAGGTGCTAAGGTTATTGCCACAGCTCTTTGCAAGGGCTCTGGGCTTGTAGGTGGTCTTTACGCACCGAGTTTAATGATTGTGCTGCAGTTGGTGCTGTGTTTGGAGGCTTTGCTGCAGAAGTTATCAATTCAGCAATTCCTGGAAATGCTGCTGTTGCACAACCCCAGGCTTATGCTCTGTTGTAGGAATGTTGGAATGGCTGCTACACTAGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTTGAGCTCACAAAAGATTATAGAATACTGCTTCCTCTCATGGTGAACACATTGCTTGTTTCCTCTGTTTGTACTCGAGGAATGAGCTATCGTGGACGAGCACGTGGACTTTTAACTTGTTATCCGAATACTAATTTGGCCACGGCTAGAGAGTTGATGGAGGCCAGGGGCGTTAAGCAATTACCAGTAGTTAAACGCGGTGGAAGTCACAATAGAGAGAGGAAGCGAAGAATTGTCGGTCTCCTTCATTATGACGAACTATGGCACTGTCTCAGCTTGATGATATTTATGTTAATGTGCAGGAAAGAGATTAACCACAGAAAGTTAGATTATCAAAGTAGAACAGAAAACAATTTGACAAATGGGCATTAA

Protein sequence

>MsG0380011721.01.T01

MNGWAGTPNEGAAWLRLQRLGDTWHRILLIPVTGGVMVGMMCGLLEILDQIKQASYSPQRQGFDLLAGIYPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGTQSAFTVPEYELKSAAELPLYLILGMLCGVVSVAMTRLVAWFTKFFDYIQEKFGLPTVVCPAIGGLGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLAGAKVIATALCKGSGLVGGLYAPSLMIVLQLVLCLEALLQKLSIQQFLEMLLLHNPRLMLCCRNVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMVNTLLVSSVCTRGMSYRGRARGLLTCYPNTNLATARELMEARGVKQLPVVKRGGSHNRERKRRIVGLLHYDELWHCLSLMIFMLMCRKEINHRKLDYQSRTENNLTNGH*