AlfalfaGEDB | MsG0380012012.01

M. sativa cultivar ZhongmuNo.1 / MsG0380012012.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012012.01.T01	XP_013458907.1	96.305	812	26	1	2	813	3	810	0	1638

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012012.01.T01	Q3E6Q1	62.485	813	301	2	1	813	1	809	0	1102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012012.01.T01	A0A072UT17	96.305	812	26	1	2	813	3	810	0.0	1638

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048065.01	MsG0380012012.01	0.800980	1.117161e-48	5.274197e-46
MsG0080048761.01	MsG0380012012.01	-0.802223	6.212738e-49	3.026643e-46
MsG0080048849.01	MsG0380012012.01	0.827317	1.672540e-54	1.609139e-51
MsG0080048878.01	MsG0380012012.01	0.833227	6.019363e-56	6.888456e-53
MsG0080049068.01	MsG0380012012.01	0.811173	7.990584e-51	4.911719e-48
MsG0180000026.01	MsG0380012012.01	0.804321	2.284605e-49	1.174413e-46
MsG0180000113.01	MsG0380012012.01	0.815742	7.910965e-52	5.500281e-49
MsG0180000354.01	MsG0380012012.01	0.843647	1.231852e-58	1.940304e-55
MsG0180000355.01	MsG0380012012.01	0.877022	8.768436e-69	4.342459e-65
MsG0180001131.01	MsG0380012012.01	0.807027	6.176359e-50	3.403598e-47

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PPI

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Gene1	Gene2	Type
MsG0080048811.01	MsG0380012012.01	PPI
MsG0480019408.01	MsG0380012012.01	PPI
MsG0580028439.01	MsG0380012012.01	PPI
MsG0580030202.01	MsG0380012012.01	PPI
MsG0780040691.01	MsG0380012012.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012012.01.T01	MTR_3g011950	96.305	812	26	1	2	813	3	810	0.0	1638
MsG0380012012.01.T01	MTR_3g011940	73.238	766	203	2	34	798	13	777	0.0	1179
MsG0380012012.01.T01	MTR_4g085110	40.077	781	462	4	35	813	38	814	0.0	620
MsG0380012012.01.T01	MTR_4g130500	39.351	770	461	4	46	813	18	783	0.0	586
MsG0380012012.01.T01	MTR_2g035620	37.978	811	468	11	34	813	81	887	0.0	584
MsG0380012012.01.T01	MTR_2g035620	28.943	615	398	10	97	679	43	650	2.98e-65	234
MsG0380012012.01.T01	MTR_4g086490	39.333	750	452	3	63	811	395	1142	0.0	575
MsG0380012012.01.T01	MTR_4g086490	28.541	473	329	6	53	520	486	954	9.54e-63	229
MsG0380012012.01.T01	MTR_4g086490	27.845	413	293	4	208	620	340	747	3.00e-45	176
MsG0380012012.01.T01	MTR_4g086490	26.217	267	194	3	50	314	685	950	7.24e-24	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012012.01.T01	AT1G11290	62.485	813	301	2	1	813	1	809	0.0	1102
MsG0380012012.01.T01	AT3G57430	40.488	778	436	12	58	813	118	890	0.0	593
MsG0380012012.01.T01	AT3G57430	30.839	548	351	12	109	637	68	606	1.42e-68	244
MsG0380012012.01.T01	AT3G57430	32.783	424	266	9	198	612	60	473	1.44e-59	218
MsG0380012012.01.T01	AT4G30700	39.113	767	460	5	50	813	30	792	0.0	588
MsG0380012012.01.T01	AT4G18750	37.467	766	476	3	50	813	107	871	0.0	570
MsG0380012012.01.T01	AT4G18750	29.670	455	313	4	144	595	100	550	5.38e-66	236
MsG0380012012.01.T01	AT4G18750	28.364	483	327	9	201	675	58	529	5.34e-51	193
MsG0380012012.01.T01	AT4G33990	39.166	743	438	8	76	813	90	823	0.0	570
MsG0380012012.01.T01	AT4G33990	30.099	505	341	7	39	536	153	652	3.50e-64	231

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Find 191 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTATGGAGGTTCAT+GGG	0.549929	3:+9489725	MsG0380012012.01.T01:CDS
AAAATCATGAAGGAAGATTA+TGG	0.323220	3:+9490960	MsG0380012012.01.T01:CDS
AAAATGGAAGATGTTCTTGC+GGG	0.422072	3:+9491669	MsG0380012012.01.T01:CDS
AAAGGGGCTCCACAAAACTC+CGG	0.563276	3:+9491280	MsG0380012012.01.T01:CDS
AAATGGAAGATGTTCTTGCG+GGG	0.652040	3:+9491670	MsG0380012012.01.T01:CDS
AACACGTAATGCTTCATTGA+TGG	0.405258	3:-9489521	None:intergenic
AAGAGCGACATGTGATAACG+TGG	0.721101	3:+9490769	MsG0380012012.01.T01:CDS
AAGAGTTGATATTGCAGCTT+CGG	0.437718	3:+9490428	MsG0380012012.01.T01:CDS
AAGCTCTCTTGCAGTTTCGA+TGG	0.535652	3:-9490733	None:intergenic
AAGGGAAAACAAACGTCACA+TGG	0.587529	3:+9490466	MsG0380012012.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGAAGATGTTCTTG+CGG	+	Chr3:9491668-9491687	MsG0380012012.01.T01:CDS	30.0%
AATCACGCTAACAAATGTAA+AGG	-	Chr3:9490586-9490605	None:intergenic	30.0%
AATGTTTATGAAGATGTTGG+AGG	+	Chr3:9490239-9490258	MsG0380012012.01.T01:CDS	30.0%
AATTGTCTACCAAAGCAAAT+TGG	+	Chr3:9491935-9491954	MsG0380012012.01.T01:exon	30.0%
ACTTGCAATCAGAACAAATA+TGG	+	Chr3:9490656-9490675	MsG0380012012.01.T01:CDS	30.0%
ATATTAGGTTATGCACAGAA+TGG	+	Chr3:9490498-9490517	MsG0380012012.01.T01:CDS	30.0%
CAAAAGAATGCAAAATGATG+AGG	+	Chr3:9489639-9489658	MsG0380012012.01.T01:CDS	30.0%
CAAGATAGTAACAGTAACAA+TGG	-	Chr3:9491718-9491737	None:intergenic	30.0%
CATTGTTACTGTTACTATCT+TGG	+	Chr3:9491716-9491735	MsG0380012012.01.T01:exon	30.0%
CCTACAAATGTTAGTATGAT+GGG	+	Chr3:9490273-9490292	MsG0380012012.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	9489160	9492353	9489160	ID=MsG0380012012.01;
Chr3	mRNA	9489160	9492353	9489160	ID=MsG0380012012.01.T01;Parent=MsG0380012012.01
Chr3	exon	9489160	9492353	9489160	ID=MsG0380012012.01.T01.exon;Parent=MsG0380012012.01.T01
Chr3	CDS	9489262	9491703	9489262	ID=MsG0380012012.01.T01.cds;Parent=MsG0380012012.01.T01

Gene Sequence

>MsG0380012012.01.T01

ATGAGTTCTAACCTCTTAGCACTACACACTCCACCACCACTCTCCACCACTACCTCCACCCCCAGAAGAAGCACAACCCCATTATACCAAAGAATCTACATCCCAACCCATATCTACCGCCACCCATCATCCATCCTCTTAGAACTCACCACTTCCATTTCTGAGCTTCATCAAATCCTCCCTCACATCATCAAAAACGGTTTCTACAATCAACACCTTTTTCAAACCAAACTCATTAGCTTGTTCTGCAAATTTGGTACCATCAATGAAGCATTACGTGTTTTTGACTCAGTTGAAACCAAACTTGATGTTCTTTATCATACCCTTCTTAAAGGGTATGTAAAAAACTCATCTTTAAGTGAGTCTCTATCCTTTTTCAAAAGAATGCAAAATGATGAGGTTATGCCTGTTGTGTATGACTTTACTTATCTTTTGCAGTTGTGTGGTGAGAATTTGGATTTGAAAAAGGGTATGGAGGTTCATGGGATGTTGATAAAAAATGGGTTTGAGTCGAATTTGTTTGCGATGACTGCAGTTGTTAATTTGTATGCGAAATGTAGGAAGATTGATGATGCGTATAAGATGTTTGTTAGAATGCCGGAGAGGGATTTGGTTTGTTGGAATACGGTTGTTGCGGGGTATGCTCAGAATGGGTTTGCTAGGAAGGCGTTGAAGTTGGTTTTGGATATGCAGGAGGATGGGAAGAAGGCGGATTCGATTACTTTGGTTAGTGTTTTACCGGCTGTGGCGGATGTTAAAGGTTTGAGAATTGGTAGGTCGGTTCATGGTTATGCTGTTAGATTGGGATTTGATTCTATGGTTAATGTTTCAGCGGCGCTTTTGGATATGTATTTTAAGTGTGGTGAAGTAGAGACTGGGAGGTTGGTTTTTCAAAGGATGAGCAGCAAGAATGTTATTTCGTGGAATACTGTAATTGATGGTCTTGCGCAGAATGGTGAATCTGAAGAAGCGTTTGCAATGTTTATGAAGATGTTGGAGGAAAAGGTGGAGCCTACAAATGTTAGTATGATGGGCGCTTTACATGCTTGCTCTAATTTAGGTGATCTTGAACGAGGGAGATTTGTTCATACATTATTGGATCAGATGAAACTTAATTCTAATGTGTCAGTAATGAATTCTTTGATTTCCATGTATTCAAAGTGTAAAAGAGTTGATATTGCAGCTTCGGTATTTGATAATTTAGAAGGGAAAACAAACGTCACATGGAATGCCATGATATTAGGTTATGCACAGAATGGTTGTGTAAATGAAGCTTTGAATCTGTTCTGTACTATGCAATCTGAAGGCATTAAACCTGATTCCTTTACATTTGTTAGCGTGATTACTGCTCTAGCAGATTTATCGGTTACCCGTCAGGCTAAGTGGATTCACGGACTTGCAATCAGAACAAATATGGACAGGAATGTCTTTGTTGCTACTGCTCTTGTTGACATGTACGTGAAATGCGGAGCCATCGAAACTGCAAGAGAGCTTTTTGACACGATGCAAGAGCGACATGTGATAACGTGGAATGCAATGATCGATGGATATGGGACACATGGCCTTGGAAAAGCAGCTCTAGATCTCTTTGATGATATGCAGAACGAAGCCTCTCTTAAGCCAAATGATATAACATTTTTGTCTGTTATTTCAGCATGCAGTCACTCAGGTTTTGTGGAAGAGGGTCTCTACTACTTCAAAATCATGAAGGAAGATTATGGCATGGAGCCTTCGATGGATCACTATGGTGCCATGGTTGATCTTCTAGGTCGTGCCGGCAAGCTAGATTATGCTTGGAAGTTTATTCACGAGATGCCTATCAAACCGGGGATTACTGTTTTAGGTGCAATGCTCGGTGCTTGCAAAATTCATAAAAATGTAGAATTGGGAGAAAAAGCTGCGGACATATTGTTCGAGTTGAATCCAGATGAGGGTGGATATTATATGCTGGTTGCAAACATGTATGCCTCTGCTTCAATGTGGGACAAAGTGGCTAAAGTGAGAACAGCCATGGAGAAAAAGGGGCTCCACAAAACTCCGGGATGCAGTTTGGTTGAATGGAGAAATGAAGTTCATGCATTCTACTCAGGAAGTACGAATCATCCTCAATCGAAGAGAATCTACGCTTTTCTCGAGACTCTTGGAGACGAGATCAGAGCTGCTGGTTATGTGCCTGACAATGATTCAATTCACGACGTAGAAGAAGACTTGAAGGAACAATTGGTCAGTAGCCATAGTGAGAGGCTTGCCATTGCATTTGGACTTCTGAATACAAGACCTGGTACGACAATACATGTAAGGAAGAACCTAAGAGTTTGTGGTGATTGTCACGAGGCTACCAAGTACATTTCGCTTGTGACCGGGAGAGAGATTGTCGTGCGAGATTTACAACGGTTCCATCATTTTAAAAATGGAAGATGTTCTTGCGGGGATTACTGGTAA

Protein sequence

>MsG0380012012.01.T01

MSSNLLALHTPPPLSTTTSTPRRSTTPLYQRIYIPTHIYRHPSSILLELTTSISELHQILPHIIKNGFYNQHLFQTKLISLFCKFGTINEALRVFDSVETKLDVLYHTLLKGYVKNSSLSESLSFFKRMQNDEVMPVVYDFTYLLQLCGENLDLKKGMEVHGMLIKNGFESNLFAMTAVVNLYAKCRKIDDAYKMFVRMPERDLVCWNTVVAGYAQNGFARKALKLVLDMQEDGKKADSITLVSVLPAVADVKGLRIGRSVHGYAVRLGFDSMVNVSAALLDMYFKCGEVETGRLVFQRMSSKNVISWNTVIDGLAQNGESEEAFAMFMKMLEEKVEPTNVSMMGALHACSNLGDLERGRFVHTLLDQMKLNSNVSVMNSLISMYSKCKRVDIAASVFDNLEGKTNVTWNAMILGYAQNGCVNEALNLFCTMQSEGIKPDSFTFVSVITALADLSVTRQAKWIHGLAIRTNMDRNVFVATALVDMYVKCGAIETARELFDTMQERHVITWNAMIDGYGTHGLGKAALDLFDDMQNEASLKPNDITFLSVISACSHSGFVEEGLYYFKIMKEDYGMEPSMDHYGAMVDLLGRAGKLDYAWKFIHEMPIKPGITVLGAMLGACKIHKNVELGEKAADILFELNPDEGGYYMLVANMYASASMWDKVAKVRTAMEKKGLHKTPGCSLVEWRNEVHAFYSGSTNHPQSKRIYAFLETLGDEIRAAGYVPDNDSIHDVEEDLKEQLVSSHSERLAIAFGLLNTRPGTTIHVRKNLRVCGDCHEATKYISLVTGREIVVRDLQRFHHFKNGRCSCGDYW*