AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048878.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048878.01.T01 MTR_5g080700 91.917 532 37 2 67 596 94 621 0.0 918
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048878.01.T01 AT3G14900 59.259 540 200 9 67 596 82 611 0.0 603

Find 4 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCAAAATCTTCAACAT+AGG 0.516127 contig505end:-16051 MsG0080048878.01.T01:exon
ATGATGATGATGCTGTTATG+AGG 0.516884 contig505end:+16100 MsG0080048878.01.T01:intergenic
TGTCCCAACCAACCTCAAAA+CGG 0.571177 contig505end:-15995 MsG0080048878.01.T01:exon
ATAGGAAGATGAACATGAGA+AGG 0.594517 contig505end:-16033 MsG0080048878.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTAAGATAATTTAATTAT+GGG + contig505end:12851-12870 MsG0080048878.01.T01:intergenic 10.0%
!!! AAAAAGTTTAAATATGTTTT+TGG + contig505end:12875-12894 MsG0080048878.01.T01:intergenic 10.0%
!!! AATTTTTTGGATTTTTTTTA+GGG - contig505end:12659-12678 MsG0080048878.01.T01:intron 10.0%
!!! ATTACAATGAATTAATTTTT+TGG - contig505end:12646-12665 MsG0080048878.01.T01:intron 10.0%
!!! TAATTTTTTGGATTTTTTTT+AGG - contig505end:12658-12677 MsG0080048878.01.T01:intron 10.0%
!!! TAGTTTTCTTTTTTAAATTA+CGG - contig505end:11862-11881 MsG0080048878.01.T01:intron 10.0%
!!! TATTTTTAATGTTTTATTTG+AGG - contig505end:13823-13842 MsG0080048878.01.T01:intron 10.0%
!! AAAAAGGAAAATTTATTGTA+AGG + contig505end:13931-13950 MsG0080048878.01.T01:intergenic 15.0%
!! ATTTGTCAAATCAATATTTA+TGG + contig505end:12745-12764 MsG0080048878.01.T01:intergenic 15.0%
!! CTCTTAAGATAATTTAATTA+TGG + contig505end:12852-12871 MsG0080048878.01.T01:intergenic 15.0%
!! CTTTAATTCCTATTAAAATA+TGG + contig505end:11529-11548 MsG0080048878.01.T01:intergenic 15.0%
!! GTAGATATTTATAATAATTG+AGG + contig505end:11463-11482 MsG0080048878.01.T01:intergenic 15.0%
!! TACACTAAAAAGTAATATTA+TGG + contig505end:12698-12717 MsG0080048878.01.T01:intergenic 15.0%
!! TTTATTGAAAGGTTTAAAAA+AGG + contig505end:13947-13966 MsG0080048878.01.T01:intergenic 15.0%
!!! ATTGATTTGACAAATAAAAT+GGG - contig505end:12750-12769 MsG0080048878.01.T01:intron 15.0%
!!! TATTGATTTGACAAATAAAA+TGG - contig505end:12749-12768 MsG0080048878.01.T01:intron 15.0%
!!! TATTTAATTTTATTGGTGAT+TGG - contig505end:12611-12630 MsG0080048878.01.T01:intron 15.0%
!! AATTTATTGTAAGGTGAAAA+TGG + contig505end:13922-13941 MsG0080048878.01.T01:intergenic 20.0%
!! ACTTGAAATCTTTAATCATT+TGG - contig505end:11003-11022 MsG0080048878.01.T01:CDS 20.0%
!! AGAATAATATATGTTTAGAG+AGG - contig505end:11057-11076 MsG0080048878.01.T01:CDS 20.0%
!! ATTCTAATCAATTCATTAAG+TGG + contig505end:10948-10967 MsG0080048878.01.T01:intergenic 20.0%
!! ATTTATTGTAAGGTGAAAAT+GGG + contig505end:13921-13940 MsG0080048878.01.T01:intergenic 20.0%
!! CAAAAAAAAGAGATCTAATA+TGG + contig505end:12253-12272 MsG0080048878.01.T01:intergenic 20.0%
!! CAAATTCACTAAAAACAAAA+AGG + contig505end:13388-13407 MsG0080048878.01.T01:intergenic 20.0%
!! CCTATTAAAATATGGTAAAT+AGG + contig505end:11521-11540 MsG0080048878.01.T01:intergenic 20.0%
!! CGGAGTATATTATATTTATA+TGG - contig505end:10660-10679 MsG0080048878.01.T01:CDS 20.0%
!! GTAGATATTTATAACAATTG+AGG + contig505end:11671-11690 MsG0080048878.01.T01:intergenic 20.0%
!! GTTAATATATATACTTAGAG+AGG - contig505end:10702-10721 MsG0080048878.01.T01:CDS 20.0%
!! TCATTTCTTATGTGTATTTA+GGG - contig505end:12213-12232 MsG0080048878.01.T01:intron 20.0%
!! TCTAATTAAAATCCATTTCA+AGG + contig505end:11096-11115 MsG0080048878.01.T01:intergenic 20.0%
!! TGAAAAAAAGTCAAAATGTT+TGG - contig505end:15000-15019 MsG0080048878.01.T01:intron 20.0%
!! TTCATTTCTTATGTGTATTT+AGG - contig505end:12212-12231 MsG0080048878.01.T01:intron 20.0%
!!! AAACTAAGTTAAGGTATTTT+TGG - contig505end:14561-14580 MsG0080048878.01.T01:intron 20.0%
!!! AAAGAGAATTTGTTTAGTTA+TGG - contig505end:10815-10834 MsG0080048878.01.T01:CDS 20.0%
!!! AACTAAGTTAAGGTATTTTT+GGG - contig505end:14562-14581 MsG0080048878.01.T01:intron 20.0%
!!! ATGGTTTTAAATGAGAATTT+GGG - contig505end:10679-10698 MsG0080048878.01.T01:CDS 20.0%
!!! ATTTTACTTACATTTGTGTT+AGG - contig505end:15785-15804 MsG0080048878.01.T01:CDS 20.0%
!!! ATTTTACTTACTTTTGTGTT+AGG - contig505end:15844-15863 MsG0080048878.01.T01:intron 20.0%
!!! CATAATCTTTTTCAGAAAAT+AGG + contig505end:15884-15903 MsG0080048878.01.T01:intergenic 20.0%
!!! CATATTAGATCTCTTTTTTT+TGG - contig505end:12251-12270 MsG0080048878.01.T01:intron 20.0%
!!! CCTATTTACCATATTTTAAT+AGG - contig505end:11518-11537 MsG0080048878.01.T01:CDS 20.0%
!!! TATCTCATTTTTAAGTTAGA+CGG - contig505end:11337-11356 MsG0080048878.01.T01:CDS 20.0%
!!! TATGGTTTTAAATGAGAATT+TGG - contig505end:10678-10697 MsG0080048878.01.T01:CDS 20.0%
!!! TTAAAGAGATTGTTTTAACT+AGG - contig505end:15668-15687 MsG0080048878.01.T01:intron 20.0%
!!! TTTAATTATGGGATTCATTT+TGG + contig505end:12840-12859 MsG0080048878.01.T01:intergenic 20.0%
!!! TTTGTTTTTCTTTTGTTTGA+TGG + contig505end:13565-13584 MsG0080048878.01.T01:intergenic 20.0%
! AATCAATTCATTAAGTGGTT+TGG + contig505end:10943-10962 MsG0080048878.01.T01:intergenic 25.0%
! AATGCGAAATCAACTATTTA+GGG - contig505end:11273-11292 MsG0080048878.01.T01:CDS 25.0%
! AATTAAAGCTCAAAAGATGT+TGG - contig505end:11541-11560 MsG0080048878.01.T01:CDS 25.0%
! AGATTTGCATTTAGCATATT+AGG + contig505end:12923-12942 MsG0080048878.01.T01:intergenic 25.0%
! ATATAAGCAATTACCTCATT+TGG - contig505end:10479-10498 MsG0080048878.01.T01:CDS 25.0%
! ATGATACTGAGATTATAGAT+TGG - contig505end:15152-15171 MsG0080048878.01.T01:intron 25.0%
! ATGTATGTAACATTTCTTTC+TGG - contig505end:15956-15975 MsG0080048878.01.T01:intron 25.0%
! CAAGAATTCAGTTGTAAAAT+GGG + contig505end:13884-13903 MsG0080048878.01.T01:intergenic 25.0%
! CATGATAGAACATAAATTAC+TGG - contig505end:16102-16121 MsG0080048878.01.T01:exon 25.0%
! GCATTAAAAAAGTTATCTTG+TGG + contig505end:14809-14828 MsG0080048878.01.T01:intergenic 25.0%
! TAACTCATTCTACTAAACTT+AGG + contig505end:15825-15844 MsG0080048878.01.T01:intergenic 25.0%
! TGTATGTAACATTTCTTTCT+GGG - contig505end:15957-15976 MsG0080048878.01.T01:intron 25.0%
! TTCTCAATTTATGACTCAAT+GGG - contig505end:16036-16055 MsG0080048878.01.T01:exon 25.0%
! TTGAAAAGAGAAAAACCTTA+TGG + contig505end:13716-13735 MsG0080048878.01.T01:intergenic 25.0%
!! AAATATGTGTGCAGATTTTA+TGG + contig505end:12371-12390 MsG0080048878.01.T01:intergenic 25.0%
!! AAATGCTCTTAAAGTTTGTT+CGG - contig505end:16061-16080 MsG0080048878.01.T01:exon 25.0%
!! AGAAATAACCCATTTAAAGT+TGG - contig505end:12991-13010 MsG0080048878.01.T01:intron 25.0%
!! CAAAAACTTAGAGAATTTTC+TGG - contig505end:12093-12112 MsG0080048878.01.T01:intron 25.0%
!! CTTTTAAACGATATAAAGAG+AGG - contig505end:10177-10196 MsG0080048878.01.T01:exon 25.0%
!! GATAAAGATTGTAGTGATTT+TGG - contig505end:10623-10642 MsG0080048878.01.T01:CDS 25.0%
!! GGAATTATCCGATAATTTTT+CGG - contig505end:14262-14281 MsG0080048878.01.T01:intron 25.0%
!! TTAGTTCTTGCAATTGTATA+TGG - contig505end:11116-11135 MsG0080048878.01.T01:CDS 25.0%
!! TTTCATGTTATTGATGGTTT+GGG - contig505end:12534-12553 MsG0080048878.01.T01:intron 25.0%
!!! AAAATGTTTGGAGTTTCTTT+TGG - contig505end:15012-15031 MsG0080048878.01.T01:intron 25.0%
!!! AAATGTTTGGAGTTTCTTTT+GGG - contig505end:15013-15032 MsG0080048878.01.T01:intron 25.0%
!!! ATATGACATTATTTTTGTGC+AGG - contig505end:12812-12831 MsG0080048878.01.T01:intron 25.0%
!!! CTGAATACTTTTTGTTGAAA+TGG - contig505end:13852-13871 MsG0080048878.01.T01:intron 25.0%
!!! CTTTTCAATTTTTAGTACAC+TGG - contig505end:13728-13747 MsG0080048878.01.T01:intron 25.0%
!!! TGGTTTTAAATGAGAATTTG+GGG - contig505end:10680-10699 MsG0080048878.01.T01:CDS 25.0%
!!! TTCTTAATCTTTTTTCTCCA+CGG + contig505end:15583-15602 MsG0080048878.01.T01:intergenic 25.0%
!!! TTTTGGAGAATCAAAGAAAA+CGG - contig505end:10640-10659 MsG0080048878.01.T01:CDS 25.0%
AAAATCCCAAATTCACTATC+AGG + contig505end:14039-14058 MsG0080048877.01.T01:intergenic 30.0%
AAGCAATAGAAAATATGGCA+AGG - contig505end:15401-15420 MsG0080048878.01.T01:intron 30.0%
ACAAGATTTCTGTAACTGAA+AGG + contig505end:15649-15668 MsG0080048878.01.T01:intergenic 30.0%
ACAGTTAACCTGATTATTGA+TGG + contig505end:12496-12515 MsG0080048878.01.T01:intergenic 30.0%
AGAGTGATGTTGAGAAAATT+AGG - contig505end:15752-15771 MsG0080048878.01.T01:CDS 30.0%
AGATGCAAAATCTTCAACAT+AGG - contig505end:10059-10078 MsG0080048878.01.T01:exon 30.0%
AGTTGGATCAAACTAAGTTA+AGG - contig505end:14552-14571 MsG0080048878.01.T01:intron 30.0%
ATATCATCATCTTCTTCATC+AGG + contig505end:15121-15140 MsG0080048878.01.T01:intergenic 30.0%
ATATGTTTAGAGAGGTTAAG+TGG - contig505end:11065-11084 MsG0080048878.01.T01:CDS 30.0%
ATGCACTTTCATGTTATTGA+TGG - contig505end:12528-12547 MsG0080048878.01.T01:intron 30.0%
ATTATCTTTCCTTCAAACGA+TGG + contig505end:13273-13292 MsG0080048878.01.T01:intergenic 30.0%
CAAATCCTCCGAAAAATTAT+CGG + contig505end:14273-14292 MsG0080048878.01.T01:intergenic 30.0%
CAATGCGAAATCAACTATTT+AGG - contig505end:11272-11291 MsG0080048878.01.T01:CDS 30.0%
CATATTAGAGATGCTTTACA+TGG + contig505end:12433-12452 MsG0080048878.01.T01:intergenic 30.0%
CCATACTTATACCAATCATA+CGG + contig505end:14368-14387 MsG0080048878.01.T01:intergenic 30.0%
GAAGAAGATGATGATATTGT+TGG - contig505end:15124-15143 MsG0080048878.01.T01:intron 30.0%
GACAAATAAAATGGGTGAAA+GGG - contig505end:12758-12777 MsG0080048878.01.T01:intron 30.0%
GACGATAATTAATGAAGTGA+AGG - contig505end:14463-14482 MsG0080048878.01.T01:intron 30.0%
GCAAGAATTCAGTTGTAAAA+TGG + contig505end:13885-13904 MsG0080048878.01.T01:intergenic 30.0%
GGTATAAGTATGGTGAATAT+GGG - contig505end:14375-14394 MsG0080048878.01.T01:intron 30.0%
GTAAACAGAGATTAGATAAG+TGG - contig505end:14669-14688 MsG0080048878.01.T01:intron 30.0%
GTTCTCAATTTATGACTCAA+TGG - contig505end:16035-16054 MsG0080048878.01.T01:exon 30.0%
TAAGGTTGTGTTTGGATTAA+GGG + contig505end:12041-12060 MsG0080048878.01.T01:intergenic 30.0%
TAATCAGGTTAACTGTTAAC+TGG - contig505end:12500-12519 MsG0080048878.01.T01:intron 30.0%
TACATCCATATACTAAAGAG+TGG - contig505end:15056-15075 MsG0080048878.01.T01:intron 30.0%
TATGGATGTAAAATTTGCAC+TGG + contig505end:15046-15065 MsG0080048878.01.T01:intergenic 30.0%
TCTCAATTTATGACTCAATG+GGG - contig505end:16037-16056 MsG0080048878.01.T01:exon 30.0%
TGACAAATAAAATGGGTGAA+AGG - contig505end:12757-12776 MsG0080048878.01.T01:intron 30.0%
TGAGATTATAGATTGGATTG+AGG - contig505end:15159-15178 MsG0080048878.01.T01:intron 30.0%
TGCAGAAGCAATAGAAAATA+TGG - contig505end:15396-15415 MsG0080048878.01.T01:intron 30.0%
TGGAAATGGTAATACAACAT+TGG + contig505end:12413-12432 MsG0080048878.01.T01:intergenic 30.0%
TGGTATAAGTATGGTGAATA+TGG - contig505end:14374-14393 MsG0080048878.01.T01:intron 30.0%
TGTCAGTTAGAAAATGATGA+TGG - contig505end:14872-14891 MsG0080048878.01.T01:intron 30.0%
TTCTTTAGCACTTGTTTGAT+CGG - contig505end:10878-10897 MsG0080048878.01.T01:CDS 30.0%
TTGAAATTTGATCAGGGTTT+GGG + contig505end:13971-13990 MsG0080048878.01.T01:intergenic 30.0%
! AAAGTTCTCTTTTGTTGGAA+AGG - contig505end:10346-10365 MsG0080048878.01.T01:exon 30.0%
! ATTAGATAAGTGGACTTTGA+TGG - contig505end:14679-14698 MsG0080048878.01.T01:intron 30.0%
! CATCATTTTCTAACTGACAA+AGG + contig505end:14871-14890 MsG0080048878.01.T01:intergenic 30.0%
! CTAAACCTGATAGTGAATTT+GGG - contig505end:14031-14050 MsG0080048878.01.T01:intron 30.0%
! CTTTCATGTTATTGATGGTT+TGG - contig505end:12533-12552 MsG0080048878.01.T01:intron 30.0%
! GAGAATTTGTTTAGTTATGG+AGG - contig505end:10818-10837 MsG0080048878.01.T01:CDS 30.0%
! GTTGTTGTTCTTCTTCTTTA+GGG + contig505end:10553-10572 MsG0080048878.01.T01:intergenic 30.0%
! TCAACAAAGTTCTCTTTTGT+TGG - contig505end:10341-10360 MsG0080048878.01.T01:exon 30.0%
! TGTGTAGTAGAAGAGATTTT+GGG - contig505end:14076-14095 MsG0080048878.01.T01:intron 30.0%
! TGTTGTTGTTCTTCTTCTTT+AGG + contig505end:10554-10573 MsG0080048878.01.T01:intergenic 30.0%
! TTAGATAAGTGGACTTTGAT+GGG - contig505end:14680-14699 MsG0080048878.01.T01:intron 30.0%
! TTATAGGTTGAAAAACCCTA+GGG - contig505end:14233-14252 MsG0080048878.01.T01:intron 30.0%
! TTTAACTAGGCATGCAATTT+TGG - contig505end:15681-15700 MsG0080048878.01.T01:intron 30.0%
! TTTATAGGTTGAAAAACCCT+AGG - contig505end:14232-14251 MsG0080048878.01.T01:intron 30.0%
! TTTTCAAAACCATCGTTTGA+AGG - contig505end:13261-13280 MsG0080048878.01.T01:intron 30.0%
!! ATTATCCGATAATTTTTCGG+AGG - contig505end:14265-14284 MsG0080048878.01.T01:intron 30.0%
!! TTTCTTTTGTTTGATGGAGA+TGG + contig505end:13559-13578 MsG0080048878.01.T01:intergenic 30.0%
!!! ATTTTGATTCCCTTTGAGAT+AGG - contig505end:10303-10322 MsG0080048878.01.T01:exon 30.0%
!!! GGTATTTTTGGGTTTTCATT+AGG - contig505end:14573-14592 MsG0080048878.01.T01:intron 30.0%
!!! TAGAAGGTAATGCTGATTTT+CGG - contig505end:14154-14173 MsG0080048878.01.T01:intron 30.0%
!!! TTGCTGAGAGTTTGTTTTAT+AGG - contig505end:14217-14236 MsG0080048878.01.T01:intron 30.0%
AAAACTCGATATCCGATCTA+AGG + contig505end:13193-13212 MsG0080048877.01.T01:intergenic 35.0%
AAAGAACAACCGATTGAGAA+CGG + contig505end:11175-11194 MsG0080048877.01.T01:intergenic 35.0%
AAATTGCAACCGTTCTCAAT+CGG - contig505end:11163-11182 MsG0080048878.01.T01:CDS 35.0%
AACACACCCTAAGTGAATAT+CGG + contig505end:11804-11823 MsG0080048878.01.T01:intergenic 35.0%
AACATTGGTGCATGTTCTTA+GGG + contig505end:12398-12417 MsG0080048878.01.T01:intergenic 35.0%
AATCAGTAGGTTACCAAATG+AGG + contig505end:10495-10514 MsG0080048878.01.T01:intergenic 35.0%
ACCATTGGACCAACTTTAAA+TGG + contig505end:13003-13022 MsG0080048878.01.T01:intergenic 35.0%
ACTATTGAACTAACCAAGTG+AGG - contig505end:10236-10255 MsG0080048878.01.T01:exon 35.0%
ACTTGTGAAGGTGAATCAAA+AGG - contig505end:14934-14953 MsG0080048878.01.T01:intron 35.0%
ACTTTCAAATACAACGACGT+AGG - contig505end:13300-13319 MsG0080048878.01.T01:intron 35.0%
AGAAGGATGATCCGAATTTA+AGG - contig505end:14339-14358 MsG0080048878.01.T01:intron 35.0%
AGAGATGCTTTACATGGAAA+TGG + contig505end:12427-12446 MsG0080048878.01.T01:intergenic 35.0%
ATACAGAGAGAAAAGTGGAA+AGG + contig505end:10529-10548 MsG0080048878.01.T01:intergenic 35.0%
ATAGATTGGATTGAGGATGA+AGG - contig505end:15166-15185 MsG0080048878.01.T01:intron 35.0%
ATAGGAAGATGAACATGAGA+AGG - contig505end:10077-10096 MsG0080048878.01.T01:exon 35.0%
ATATTCACTTAGGGTGTGTT+TGG - contig505end:11804-11823 MsG0080048878.01.T01:CDS 35.0%
ATGCAAACCGATATTCACTT+AGG - contig505end:11794-11813 MsG0080048878.01.T01:CDS 35.0%
ATTCCTTATGGAGCCAATTT+CGG - contig505end:13081-13100 MsG0080048878.01.T01:intron 35.0%
CAACTGTTATATACCTCACT+TGG + contig505end:10252-10271 MsG0080048878.01.T01:intergenic 35.0%
CAGTAAGAAACTTCACCATA+AGG - contig505end:13698-13717 MsG0080048878.01.T01:intron 35.0%
CATGTTTGTCATTAACACTG+TGG - contig505end:15981-16000 MsG0080048878.01.T01:exon 35.0%
CCATTGGACCAACTTTAAAT+GGG + contig505end:13002-13021 MsG0080048878.01.T01:intergenic 35.0%
CCGTATGATTGGTATAAGTA+TGG - contig505end:14365-14384 MsG0080048878.01.T01:intron 35.0%
CTAAGGTTGTGTTTGGATTA+AGG + contig505end:12042-12061 MsG0080048878.01.T01:intergenic 35.0%
CTCAATTTATGACTCAATGG+GGG - contig505end:16038-16057 MsG0080048878.01.T01:exon 35.0%
GAATAGTGTCCTATCTCAAA+GGG + contig505end:10315-10334 MsG0080048878.01.T01:intergenic 35.0%
GAGATGGAAGAAACTCATTT+GGG - contig505end:12185-12204 MsG0080048878.01.T01:intron 35.0%
GAGGTATATAACAGTTGTTG+TGG - contig505end:10255-10274 MsG0080048878.01.T01:exon 35.0%
GATCATGACCATCAATAATC+AGG - contig505end:12485-12504 MsG0080048878.01.T01:intron 35.0%
GGAGATTGAGAAATCTGAAA+TGG - contig505end:14502-14521 MsG0080048878.01.T01:intron 35.0%
GTGAAGTTTCTTACTGTTTC+CGG + contig505end:13694-13713 MsG0080048878.01.T01:intergenic 35.0%
GTTCTTGCAATTGTATATGG+AGG - contig505end:11119-11138 MsG0080048878.01.T01:CDS 35.0%
GTTGAAATTTGATCAGGGTT+TGG + contig505end:13972-13991 MsG0080048878.01.T01:intergenic 35.0%
GTTGAGACGTGTACTTATTA+TGG - contig505end:14899-14918 MsG0080048878.01.T01:intron 35.0%
GTTTAGTTATGGAGGTAAAG+AGG - contig505end:10826-10845 MsG0080048878.01.T01:CDS 35.0%
TAAGAAGCAAATGATGACAG+CGG - contig505end:15453-15472 MsG0080048878.01.T01:intron 35.0%
TAAGTGGTTGATCCTTGAAA+TGG - contig505end:11081-11100 MsG0080048878.01.T01:CDS 35.0%
TCATACGGATGCCTTAAATT+CGG + contig505end:14353-14372 MsG0080048878.01.T01:intergenic 35.0%
TCCATATACTAAAGAGTGGA+AGG - contig505end:15060-15079 MsG0080048878.01.T01:intron 35.0%
TGAAATGAGCGAGTAAAACA+TGG - contig505end:10725-10744 MsG0080048878.01.T01:CDS 35.0%
TGAATAGTGTCCTATCTCAA+AGG + contig505end:10316-10335 MsG0080048878.01.T01:intergenic 35.0%
TGAGATGGAAGAAACTCATT+TGG - contig505end:12184-12203 MsG0080048878.01.T01:intron 35.0%
TGCAAACCGATATTCACTTA+GGG - contig505end:11795-11814 MsG0080048878.01.T01:CDS 35.0%
TGCTAAATGCAAATCTCCAA+TGG - contig505end:12927-12946 MsG0080048878.01.T01:intron 35.0%
TGGATTGTGTAAACTTGTGA+AGG - contig505end:14922-14941 MsG0080048878.01.T01:intron 35.0%
TGTGTTTGGATTAAGGGTTT+AGG + contig505end:12035-12054 MsG0080048878.01.T01:intergenic 35.0%
TTATGGACATGTTGACACTA+AGG + contig505end:12728-12747 MsG0080048878.01.T01:intergenic 35.0%
! ACTTGTTGCAATAGCTTCTT+TGG - contig505end:10439-10458 MsG0080048878.01.T01:CDS 35.0%
! AGGGTTTGGGATTTATTGAA+AGG + contig505end:13958-13977 MsG0080048878.01.T01:intergenic 35.0%
! ATGATGATGATGCTGTTATG+AGG + contig505end:10013-10032 MsG0080048878.01.T01:intergenic 35.0%
! ATTTAAGGCATCCGTATGAT+TGG - contig505end:14354-14373 MsG0080048878.01.T01:intron 35.0%
! ATTTGGGAAATGAAGAGCAT+CGG - contig505end:10379-10398 MsG0080048878.01.T01:exon 35.0%
! CAACAAGTGTTTTGTCTCAT+AGG + contig505end:10427-10446 MsG0080048878.01.T01:intergenic 35.0%
! GAAAATGGGTTTAAGGTTCT+AGG + contig505end:13907-13926 MsG0080048878.01.T01:intergenic 35.0%
! GCTAAACCTGATAGTGAATT+TGG - contig505end:14030-14049 MsG0080048878.01.T01:intron 35.0%
! GGTTAGTTCAATAGTTTCCA+TGG + contig505end:10231-10250 MsG0080048878.01.T01:intergenic 35.0%
! GTAAGGTGAAAATGGGTTTA+AGG + contig505end:13914-13933 MsG0080048878.01.T01:intergenic 35.0%
! GTGTGTAGTAGAAGAGATTT+TGG - contig505end:14075-14094 MsG0080048878.01.T01:intron 35.0%
! GTGTTTTGCATGTAAAAAGC+TGG - contig505end:10141-10160 MsG0080048878.01.T01:exon 35.0%
! TATAGGTTGAAAAACCCTAG+GGG - contig505end:14234-14253 MsG0080048878.01.T01:intron 35.0%
! TCTCTTTTGTTGGAAAGGAA+GGG - contig505end:10351-10370 MsG0080048878.01.T01:exon 35.0%
! TTCTCTTTTGTTGGAAAGGA+AGG - contig505end:10350-10369 MsG0080048878.01.T01:exon 35.0%
! TTTTCATTAGGCATCCAAAG+TGG - contig505end:14585-14604 MsG0080048878.01.T01:intron 35.0%
!! AAGAGATTTTGGGTGTTATG+CGG - contig505end:14086-14105 MsG0080048878.01.T01:intron 35.0%
!! CGATTTTGTTATCGTTCCAT+TGG + contig505end:12946-12965 MsG0080048878.01.T01:intergenic 35.0%
!!! AAAGGCTTTTGTTGATGATG+TGG - contig505end:14952-14971 MsG0080048878.01.T01:intron 35.0%
!!! AACTTTTTGAGTAGTTGCCA+TGG - contig505end:10211-10230 MsG0080048878.01.T01:exon 35.0%
AAAATCCCAAGTCAACCACT+AGG + contig505end:13035-13054 MsG0080048877.01.T01:intergenic 40.0%
AACAGTTGTTGTGGATAGAG+AGG - contig505end:10264-10283 MsG0080048878.01.T01:exon 40.0%
AACTAGTTGTGGGTTCACTA+AGG + contig505end:12059-12078 MsG0080048878.01.T01:intergenic 40.0%
AACTTGTGACTGATACTACG+AGG + contig505end:13612-13631 MsG0080048878.01.T01:intergenic 40.0%
AAGTGAAGGATCATGAAGAG+TGG - contig505end:14477-14496 MsG0080048878.01.T01:intron 40.0%
AATGGTGAGGTTTATGGAGA+AGG - contig505end:14322-14341 MsG0080048878.01.T01:intron 40.0%
ACAGTTGTTGTGGATAGAGA+GGG - contig505end:10265-10284 MsG0080048878.01.T01:exon 40.0%
ACTATCAGGTTTAGCGTTTC+GGG + contig505end:14025-14044 MsG0080048878.01.T01:intergenic 40.0%
ACTTGTGACTGATACTACGA+GGG + contig505end:13611-13630 MsG0080048878.01.T01:intergenic 40.0%
AGAATGAGAGATTCCATGTC+AGG - contig505end:12296-12315 MsG0080048878.01.T01:intron 40.0%
AGATGGTAAATTCCATGCCA+TGG - contig505end:15327-15346 MsG0080048878.01.T01:CDS 40.0%
AGTGAAGGATCATGAAGAGT+GGG - contig505end:14478-14497 MsG0080048878.01.T01:intron 40.0%
ATGGACATTAGTTAGTGAGG+TGG - contig505end:14634-14653 MsG0080048878.01.T01:intron 40.0%
ATTAAGGGTTTAGGAGAGGA+AGG + contig505end:12026-12045 MsG0080048878.01.T01:intergenic 40.0%
ATTGAGGATGAAGGTAGTGA+CGG - contig505end:15175-15194 MsG0080048878.01.T01:intron 40.0%
CAACATTGGTGCATGTTCTT+AGG + contig505end:12399-12418 MsG0080048878.01.T01:intergenic 40.0%
CAATAGCTTCTTTGGTTGGA+AGG - contig505end:10447-10466 MsG0080048878.01.T01:CDS 40.0%
CACTATCAGGTTTAGCGTTT+CGG + contig505end:14026-14045 MsG0080048878.01.T01:intergenic 40.0%
CGCTTGACATACACAATATC+AGG + contig505end:14761-14780 MsG0080048878.01.T01:intergenic 40.0%
CTTTGGTTGGAAGGAATGAA+AGG - contig505end:10456-10475 MsG0080048878.01.T01:CDS 40.0%
GAAAGGAAGGGCAATGATTT+GGG - contig505end:10363-10382 MsG0080048878.01.T01:exon 40.0%
GACATGGAAGAAAGCAAAGA+TGG - contig505end:15310-15329 MsG0080048878.01.T01:intron 40.0%
GAGACGTGTACTTATTATGG+TGG - contig505end:14902-14921 MsG0080048878.01.T01:intron 40.0%
GCAATGGACATTAGTTAGTG+AGG - contig505end:14631-14650 MsG0080048878.01.T01:intron 40.0%
GCACAGTTGTTCAAGATAGT+GGG - contig505end:10779-10798 MsG0080048878.01.T01:CDS 40.0%
GCCTTCCACTCTTTAGTATA+TGG + contig505end:15064-15083 MsG0080048878.01.T01:intergenic 40.0%
GGCAACTACTCAAAAAGTTG+AGG + contig505end:10210-10229 MsG0080048878.01.T01:intergenic 40.0%
GGTAGTGTTACAAAGTAACG+TGG - contig505end:12272-12291 MsG0080048878.01.T01:intron 40.0%
GTGGGGTTGAAATTTGATCA+GGG + contig505end:13977-13996 MsG0080048878.01.T01:intergenic 40.0%
GTTGCAATAGCTTCTTTGGT+TGG - contig505end:10443-10462 MsG0080048878.01.T01:CDS 40.0%
TAAAGAGTGGAAGGCTAAGT+TGG - contig505end:15069-15088 MsG0080048878.01.T01:intron 40.0%
TAGTGAACCCACAACTAGTT+GGG - contig505end:12059-12078 MsG0080048878.01.T01:intron 40.0%
TATTGTGTATGTCAAGCGTC+CGG - contig505end:14763-14782 MsG0080048878.01.T01:intron 40.0%
TCTTCTGGTGGTAGATTAGA+AGG - contig505end:14138-14157 MsG0080048878.01.T01:intron 40.0%
TGACGATGATGATCAAGAGA+TGG - contig505end:15228-15247 MsG0080048878.01.T01:intron 40.0%
TGATCGAATGGTGAGGTTTA+TGG - contig505end:14316-14335 MsG0080048878.01.T01:intron 40.0%
TGCACAGTTGTTCAAGATAG+TGG - contig505end:10778-10797 MsG0080048878.01.T01:CDS 40.0%
TGCAGACCAAGATCTAGTTA+CGG - contig505end:15288-15307 MsG0080048878.01.T01:intron 40.0%
TGGGAAAAAAGTGAAGCAGT+TGG - contig505end:14535-14554 MsG0080048878.01.T01:intron 40.0%
TGTGGGGTTGAAATTTGATC+AGG + contig505end:13978-13997 MsG0080048878.01.T01:intergenic 40.0%
TGTGTTTGGAAGGAGAGTTT+AGG - contig505end:11818-11837 MsG0080048878.01.T01:CDS 40.0%
TTAAGGGTTTAGGAGAGGAA+GGG + contig505end:12025-12044 MsG0080048878.01.T01:intergenic 40.0%
TTAGTGAACCCACAACTAGT+TGG - contig505end:12058-12077 MsG0080048878.01.T01:intron 40.0%
TTGCATGTAAAAAGCTGGTG+AGG - contig505end:10146-10165 MsG0080048878.01.T01:exon 40.0%
TTGGATATGATCGAATGGTG+AGG - contig505end:14309-14328 MsG0080048878.01.T01:intron 40.0%
TTGGATTAAGGGTTTAGGAG+AGG + contig505end:12030-12049 MsG0080048878.01.T01:intergenic 40.0%
TTGTTTGATGGAGATGGAAC+TGG + contig505end:13553-13572 MsG0080048878.01.T01:intergenic 40.0%
! ACTAGGCATGCAATTTTGGA+TGG - contig505end:15685-15704 MsG0080048878.01.T01:intron 40.0%
! AGAAGAGTGGAAGTATGTTG+GGG - contig505end:15552-15571 MsG0080048878.01.T01:intron 40.0%
! CAAGTGTTTTGTCTCATAGG+TGG + contig505end:10424-10443 MsG0080048878.01.T01:intergenic 40.0%
! CAGAAGAGTGGAAGTATGTT+GGG - contig505end:15551-15570 MsG0080048878.01.T01:intron 40.0%
! CCCATTTAAAGTTGGTCCAA+TGG - contig505end:12999-13018 MsG0080048878.01.T01:intron 40.0%
! CTCATAGGTGGATTTCACTT+TGG + contig505end:10412-10431 MsG0080048878.01.T01:intergenic 40.0%
! GCAATTTTGGATGGTGACAT+TGG - contig505end:15694-15713 MsG0080048878.01.T01:intron 40.0%
! GCAGATTTTATGGCTAAGGA+AGG + contig505end:12361-12380 MsG0080048878.01.T01:intergenic 40.0%
! GTGTGCAGATTTTATGGCTA+AGG + contig505end:12365-12384 MsG0080048878.01.T01:intergenic 40.0%
! TGGTCTTGGATATGATCGAA+TGG - contig505end:14304-14323 MsG0080048878.01.T01:intron 40.0%
! TTAATGACCTAGTGCTGAGA+TGG - contig505end:12169-12188 MsG0080048878.01.T01:intron 40.0%
! TTTTGGATGGTGACATTGGT+AGG - contig505end:15698-15717 MsG0080048878.01.T01:intron 40.0%
!! AGAGATTTTGGGTGTTATGC+GGG - contig505end:14087-14106 MsG0080048878.01.T01:intron 40.0%
!! GGAGACGAAACTGTTTTAAG+AGG - contig505end:15508-15527 MsG0080048878.01.T01:intron 40.0%
!! GGATTAGTCGATCCTTAGAT+CGG - contig505end:13178-13197 MsG0080048878.01.T01:intron 40.0%
!! GGCAAGTTGATAGAATCAGT+AGG + contig505end:10508-10527 MsG0080048878.01.T01:intergenic 40.0%
!! TATTGATGGTTTGGGTTGTC+TGG - contig505end:12542-12561 MsG0080048878.01.T01:intron 40.0%
!!! CTGAAATGGCTGCTGATTTT+GGG - contig505end:14516-14535 MsG0080048878.01.T01:intron 40.0%
!!! GTAATGCTGATTTTCGGAGA+CGG - contig505end:14160-14179 MsG0080048878.01.T01:intron 40.0%
!!! TAGTGGTTGACTTGGGATTT+TGG - contig505end:13034-13053 MsG0080048878.01.T01:intron 40.0%
!!! TCTGAAATGGCTGCTGATTT+TGG - contig505end:14515-14534 MsG0080048878.01.T01:intron 40.0%
AAGGAGAGTTTAGGAGAGGA+AGG - contig505end:11827-11846 MsG0080048878.01.T01:CDS 45.0%
AAGTTGGAAGAGATGGAGCT+TGG - contig505end:15085-15104 MsG0080048878.01.T01:intron 45.0%
ACAATCCCACGCCAAGAATA+CGG + contig505end:14401-14420 MsG0080048878.01.T01:intergenic 45.0%
ACTAATGTCCATTGCTGCCA+CGG + contig505end:14626-14645 MsG0080048878.01.T01:intergenic 45.0%
AGGAGAGTTTAGGAGAGGAA+GGG - contig505end:11828-11847 MsG0080048878.01.T01:CDS 45.0%
AGGGCATACAGAGAGAAAAG+TGG + contig505end:10534-10553 MsG0080048878.01.T01:intergenic 45.0%
AGTTCCGAAACTCTCCACTT+TGG + contig505end:14602-14621 MsG0080048878.01.T01:intergenic 45.0%
ATCCACGACTTGTGCTATAG+CGG + contig505end:10983-11002 MsG0080048878.01.T01:intergenic 45.0%
ATGAGAGATTCCATGTCAGG+TGG - contig505end:12299-12318 MsG0080048878.01.T01:intron 45.0%
CCAACATACTTCCACTCTTC+TGG + contig505end:15553-15572 MsG0080048878.01.T01:intergenic 45.0%
CCAAGATCTAGTTACGGACA+TGG - contig505end:15294-15313 MsG0080048878.01.T01:intron 45.0%
CCATGTCCGTAACTAGATCT+TGG + contig505end:15297-15316 MsG0080048878.01.T01:intergenic 45.0%
CGATGATGATCAAGAGATGG+AGG - contig505end:15231-15250 MsG0080048878.01.T01:intron 45.0%
CTAAGGAAGGATCACATGCA+AGG + contig505end:12348-12367 MsG0080048878.01.T01:intergenic 45.0%
CTGATACTACGAGGGAAAAG+TGG + contig505end:13603-13622 MsG0080048878.01.T01:intergenic 45.0%
CTTATGGAGCCAATTTCGGT+GGG - contig505end:13085-13104 MsG0080048878.01.T01:intron 45.0%
GAAACAACGCGTTCAGTAGA+CGG - contig505end:15487-15506 MsG0080048878.01.T01:intron 45.0%
GACGGTGATGCTGAATTTGA+TGG - contig505end:15193-15212 MsG0080048878.01.T01:intron 45.0%
GCATCCAAAGTGGAGAGTTT+CGG - contig505end:14595-14614 MsG0080048878.01.T01:intron 45.0%
GCCATGGAAGAAGATGTGAA+GGG - contig505end:15343-15362 MsG0080048878.01.T01:intron 45.0%
GGAAAGGAAGGGCAATGATT+TGG - contig505end:10362-10381 MsG0080048878.01.T01:exon 45.0%
GGGTTCACTAAGGTTGTGTT+TGG + contig505end:12049-12068 MsG0080048878.01.T01:intergenic 45.0%
GTGAATATGGGCCGTATTCT+TGG - contig505end:14387-14406 MsG0080048878.01.T01:intron 45.0%
GTTTCTTCCATCTCAGCACT+AGG + contig505end:12179-12198 MsG0080048878.01.T01:intergenic 45.0%
TCAAACCTACACTGGAACAC+CGG + contig505end:14785-14804 MsG0080048878.01.T01:intergenic 45.0%
TCACATCTTCTTCCATGGCA+TGG + contig505end:15342-15361 MsG0080048878.01.T01:intergenic 45.0%
TCACTTAGGGTGTGTTTGGA+AGG - contig505end:11808-11827 MsG0080048878.01.T01:CDS 45.0%
TCCATTTCTTGATCCTCGCA+CGG - contig505end:14835-14854 MsG0080048878.01.T01:intron 45.0%
TGATGATCAAGAGATGGAGG+AGG - contig505end:15234-15253 MsG0080048878.01.T01:intron 45.0%
TGCCATGGAAGAAGATGTGA+AGG - contig505end:15342-15361 MsG0080048878.01.T01:intron 45.0%
TGTCCCAACCAACCTCAAAA+CGG - contig505end:10115-10134 MsG0080048878.01.T01:exon 45.0%
TTGGAAGGAGAGTTTAGGAG+AGG - contig505end:11823-11842 MsG0080048878.01.T01:CDS 45.0%
TTTAAGAGGAAAGCGAGCGA+AGG - contig505end:15522-15541 MsG0080048878.01.T01:intron 45.0%
! AGCTTTGCTCTGGCTTAGAA+CGG - contig505end:13121-13140 MsG0080048878.01.T01:intron 45.0%
! CCAGAAGAGTGGAAGTATGT+TGG - contig505end:15550-15569 MsG0080048878.01.T01:intron 45.0%
! GAAGGCTAAGTTGGAAGAGA+TGG - contig505end:15078-15097 MsG0080048878.01.T01:intron 45.0%
! GCAAAACACTCACCGTTTTG+AGG + contig505end:10130-10149 MsG0080048878.01.T01:intergenic 45.0%
! GGACTTTGATGGGTAGACTT+GGG - contig505end:14690-14709 MsG0080048878.01.T01:intron 45.0%
! TATTTCTGCGAGCAGCTGTT+CGG - contig505end:15623-15642 MsG0080048878.01.T01:intron 45.0%
! TCAAGGTGCTCGATTCCTTA+TGG - contig505end:13069-13088 MsG0080048878.01.T01:intron 45.0%
! TGAGTTGAGTTCAGTGTGAC+TGG + contig505end:13635-13654 MsG0080048878.01.T01:intergenic 45.0%
! TGGACTTTGATGGGTAGACT+TGG - contig505end:14689-14708 MsG0080048878.01.T01:intron 45.0%
! TTTGGAGTGTGTTCCTCTCA+AGG - contig505end:13052-13071 MsG0080048878.01.T01:intron 45.0%
!! CAGTTGTTCAAGATAGTGGG+CGG - contig505end:10782-10801 MsG0080048878.01.T01:CDS 45.0%
!! GAGGATTTGTTGCAGCAGAT+TGG - contig505end:14284-14303 MsG0080048878.01.T01:intron 45.0%
!! TTGTTGCAGCAGATTGGTCT+TGG - contig505end:14290-14309 MsG0080048878.01.T01:intron 45.0%
!!! AACACTCACCGTTTTGAGGT+TGG + contig505end:10126-10145 MsG0080048878.01.T01:intergenic 45.0%
!!! TCACCGTTTTGAGGTTGGTT+GGG + contig505end:10121-10140 MsG0080048878.01.T01:intergenic 45.0%
!!! TTTCAATTATTTAATTTTAT+TGG - contig505end:12604-12623 MsG0080048878.01.T01:intron 5.0%
AAATGATGACAGCGGAGGCA+GGG - contig505end:15461-15480 MsG0080048878.01.T01:intron 50.0%
AAGGAATCGAGCACCTTGAG+AGG + contig505end:13068-13087 MsG0080048878.01.T01:intergenic 50.0%
AATCTCACCGCCCATTTGTC+GGG + contig505end:13149-13168 MsG0080048878.01.T01:intergenic 50.0%
ACTAGGCCAACGTCAACCAT+TGG + contig505end:13018-13037 MsG0080048878.01.T01:intergenic 50.0%
AGAAGATGTGAAGGGCTGGA+AGG - contig505end:15351-15370 MsG0080048878.01.T01:intron 50.0%
AGAGATTCCATGTCAGGTGG+AGG - contig505end:12302-12321 MsG0080048878.01.T01:intron 50.0%
AGAGTTTAGGAGAGGAAGGG+AGG - contig505end:11831-11850 MsG0080048878.01.T01:CDS 50.0%
AGCCAGAGCAAAGCTCTGTA+TGG + contig505end:13116-13135 MsG0080048878.01.T01:intergenic 50.0%
AGGTAATCTTGTTCCGTGCG+AGG + contig505end:14851-14870 MsG0080048878.01.T01:intergenic 50.0%
AGTGAGGTGGTACTTGAAGC+TGG - contig505end:14647-14666 MsG0080048878.01.T01:intron 50.0%
AGTTTAGGAGAGGAAGGGAG+GGG - contig505end:11833-11852 MsG0080048878.01.T01:CDS 50.0%
ATGGACTTGCCCACCGAAAT+TGG + contig505end:13097-13116 MsG0080048878.01.T01:intergenic 50.0%
CAATCTCACCGCCCATTTGT+CGG + contig505end:13150-13169 MsG0080048878.01.T01:intergenic 50.0%
CCTTATGGAGCCAATTTCGG+TGG - contig505end:13084-13103 MsG0080048878.01.T01:intron 50.0%
CTACGAGGGAAAAGTGGTAG+CGG + contig505end:13597-13616 MsG0080048878.01.T01:intergenic 50.0%
CTGAACTCAACTCAACTGCC+CGG - contig505end:13641-13660 MsG0080048878.01.T01:intron 50.0%
CTTGTGGCTCAAACCTACAC+TGG + contig505end:14793-14812 MsG0080048878.01.T01:intergenic 50.0%
GAAGCAAATGATGACAGCGG+AGG - contig505end:15456-15475 MsG0080048878.01.T01:intron 50.0%
GAAGGATCATGAAGAGTGGG+AGG - contig505end:14481-14500 MsG0080048878.01.T01:intron 50.0%
GAGATTCCATGTCAGGTGGA+GGG - contig505end:12303-12322 MsG0080048878.01.T01:intron 50.0%
GAGTTTAGGAGAGGAAGGGA+GGG - contig505end:11832-11851 MsG0080048878.01.T01:CDS 50.0%
GATAATTCCCACGTCCCCTA+GGG + contig505end:14251-14270 MsG0080048878.01.T01:intergenic 50.0%
GATGGGTAGACTTGGGAACA+AGG - contig505end:14697-14716 MsG0080048878.01.T01:intron 50.0%
GCCCTTCACATCTTCTTCCA+TGG + contig505end:15347-15366 MsG0080048878.01.T01:intergenic 50.0%
GCTCGCAGAAATAGATCTGG+AGG + contig505end:15616-15635 MsG0080048878.01.T01:intergenic 50.0%
GCTGCTCGCAGAAATAGATC+TGG + contig505end:15619-15638 MsG0080048878.01.T01:intergenic 50.0%
GGCGGTGAGATTGATCAACT+CGG - contig505end:13157-13176 MsG0080048878.01.T01:intron 50.0%
GTCCATACAGAGCTTTGCTC+TGG - contig505end:13111-13130 MsG0080048878.01.T01:intron 50.0%
GTTGGTCCAATGGTTGACGT+TGG - contig505end:13009-13028 MsG0080048878.01.T01:intron 50.0%
TACCGCTATAGCACAAGTCG+TGG - contig505end:10978-10997 MsG0080048878.01.T01:CDS 50.0%
TCCGTAATCCCACCACTAAC+CGG + contig505end:14434-14453 MsG0080048878.01.T01:intergenic 50.0%
TCCGTGCGAGGATCAAGAAA+TGG + contig505end:14839-14858 MsG0080048878.01.T01:intergenic 50.0%
TCTTGGCGTGGGATTGTTGT+TGG - contig505end:14404-14423 MsG0080048878.01.T01:intron 50.0%
TGAAAAACCCTAGGGGACGT+GGG - contig505end:14241-14260 MsG0080048878.01.T01:intron 50.0%
TGATCAAGAGATGGAGGAGG+AGG - contig505end:15237-15256 MsG0080048878.01.T01:intron 50.0%
TGCGGGTCGTAGTAAGAAGA+CGG - contig505end:14104-14123 MsG0080048878.01.T01:intron 50.0%
TGGAAGAAGATGTGAAGGGC+TGG - contig505end:15347-15366 MsG0080048878.01.T01:intron 50.0%
TTGAAAAACCCTAGGGGACG+TGG - contig505end:14240-14259 MsG0080048878.01.T01:intron 50.0%
! AATGGTTGACGTTGGCCTAG+TGG - contig505end:13017-13036 MsG0080048878.01.T01:intron 50.0%
! CCACCGAAATTGGCTCCATA+AGG + contig505end:13087-13106 MsG0080048878.01.T01:intergenic 50.0%
! CGAAGGTTAGTCCAGAAGAG+TGG - contig505end:15539-15558 MsG0080048878.01.T01:intron 50.0%
! CTTTGCTCTGGCTTAGAACG+GGG - contig505end:13123-13142 MsG0080048878.01.T01:intron 50.0%
! GAGTGGAAGTATGTTGGGGT+CGG - contig505end:15556-15575 MsG0080048878.01.T01:intron 50.0%
! GCTTTGCTCTGGCTTAGAAC+GGG - contig505end:13122-13141 MsG0080048878.01.T01:intron 50.0%
! GTTGGCCTAGTGGTTGACTT+GGG - contig505end:13027-13046 MsG0080048878.01.T01:intron 50.0%
! TGGGATTGTTGTTGGTGAGC+CGG - contig505end:14412-14431 MsG0080048878.01.T01:intron 50.0%
!!! CTCACCGTTTTGAGGTTGGT+TGG + contig505end:10122-10141 MsG0080048878.01.T01:intergenic 50.0%
AATGATGACAGCGGAGGCAG+GGG - contig505end:15462-15481 MsG0080048878.01.T01:intron 55.0%
AGAGATGGAGGAGGAGGATG+AGG - contig505end:15243-15262 MsG0080048878.01.T01:intron 55.0%
AGGGTTTAGGAGAGGAAGGG+AGG + contig505end:12022-12041 MsG0080048878.01.T01:intergenic 55.0%
ATGGGCCGTATTCTTGGCGT+GGG - contig505end:14393-14412 MsG0080048878.01.T01:intron 55.0%
CAAATGATGACAGCGGAGGC+AGG - contig505end:15460-15479 MsG0080048878.01.T01:intron 55.0%
CCGGAGTTTCTATCAGTCGC+CGG - contig505end:13672-13691 MsG0080048878.01.T01:intron 55.0%
CCGGCGACTGATAGAAACTC+CGG + contig505end:13675-13694 MsG0080048878.01.T01:intergenic 55.0%
GACGGATGAAGCGTAATGCG+AGG - contig505end:14178-14197 MsG0080048878.01.T01:intron 55.0%
GCGACTGATAGAAACTCCGG+CGG + contig505end:13672-13691 MsG0080048878.01.T01:intergenic 55.0%
GCGGGTCGTAGTAAGAAGAC+GGG - contig505end:14105-14124 MsG0080048878.01.T01:intron 55.0%
GCTCGCTCCCAACTAGTTGT+GGG + contig505end:12069-12088 MsG0080048878.01.T01:intergenic 55.0%
GGAGAGTTTCGGAACTTCCG+TGG - contig505end:14606-14625 MsG0080048878.01.T01:intron 55.0%
GGATAATTCCCACGTCCCCT+AGG + contig505end:14252-14271 MsG0080048878.01.T01:intergenic 55.0%
GGGTTTAGGAGAGGAAGGGA+GGG + contig505end:12021-12040 MsG0080048878.01.T01:intergenic 55.0%
GGTCGTAGTAAGAAGACGGG+TGG - contig505end:14108-14127 MsG0080048878.01.T01:intron 55.0%
GGTTTAGGAGAGGAAGGGAG+GGG + contig505end:12020-12039 MsG0080048878.01.T01:intergenic 55.0%
GTAGACTTGGGAACAAGGCG+AGG - contig505end:14702-14721 MsG0080048878.01.T01:intron 55.0%
TAGAACGGGGCCCGACAAAT+GGG - contig505end:13136-13155 MsG0080048878.01.T01:intron 55.0%
TATGGGCCGTATTCTTGGCG+TGG - contig505end:14392-14411 MsG0080048878.01.T01:intron 55.0%
TGCTCGCTCCCAACTAGTTG+TGG + contig505end:12070-12089 MsG0080048878.01.T01:intergenic 55.0%
TTAGAACGGGGCCCGACAAA+TGG - contig505end:13135-13154 MsG0080048878.01.T01:intron 55.0%
TTGGTGAGCCGGTTAGTGGT+GGG - contig505end:14423-14442 MsG0080048878.01.T01:intron 55.0%
! CATGCAAGGCGTTTGCTCAC+TGG + contig505end:12334-12353 MsG0080048878.01.T01:intergenic 55.0%
! CGTTGGCCTAGTGGTTGACT+TGG - contig505end:13026-13045 MsG0080048878.01.T01:intron 55.0%
! GCCGGTTAGTGGTGGGATTA+CGG - contig505end:14430-14449 MsG0080048878.01.T01:intron 55.0%
! GTTGTTGGTGAGCCGGTTAG+TGG - contig505end:14419-14438 MsG0080048878.01.T01:intron 55.0%
AGAAACTCCGGCGGCGTTTC+CGG + contig505end:13663-13682 MsG0080048878.01.T01:intergenic 60.0%
AGCGTCCGGTGTTCCAGTGT+AGG - contig505end:14777-14796 MsG0080048878.01.T01:intron 60.0%
AGTATGTTGGGGTCGGTCCG+TGG - contig505end:15563-15582 MsG0080048878.01.T01:intron 60.0%
CGGAACTTCCGTGGCAGCAA+TGG - contig505end:14615-14634 MsG0080048878.01.T01:intron 60.0%
GAACAAGGCGAGGTCGTTGG+TGG - contig505end:14712-14731 MsG0080048878.01.T01:intron 60.0%
GAACTGCCCTCCACCTGACA+TGG + contig505end:12312-12331 MsG0080048878.01.T01:intergenic 60.0%
TAGGAGAGGAAGGGAGGGGA+GGG - contig505end:11837-11856 MsG0080048878.01.T01:CDS 60.0%
TAGGAGAGGAAGGGAGGGGA+GGG + contig505end:11856-11837 MsG0080048878.01.T01:intergenic 60.0%
TGGGAACAAGGCGAGGTCGT+TGG - contig505end:14709-14728 MsG0080048878.01.T01:intron 60.0%
TTAGGAGAGGAAGGGAGGGG+AGG - contig505end:11836-11855 MsG0080048878.01.T01:CDS 60.0%
TTAGGAGAGGAAGGGAGGGG+AGG + contig505end:11855-11836 MsG0080048878.01.T01:intergenic 60.0%
! GTTGGTGAGCCGGTTAGTGG+TGG - contig505end:14422-14441 MsG0080048878.01.T01:intron 60.0%
AACGGGGCCCGACAAATGGG+CGG - contig505end:13139-13158 MsG0080048878.01.T01:intron 65.0%
ACGGGTGGTGCGTCGTCTTC+TGG - contig505end:14123-14142 MsG0080048878.01.T01:intron 65.0%
GAAACTCCGGCGGCGTTTCC+GGG + contig505end:13662-13681 MsG0080048878.01.T01:intergenic 65.0%
GGTGGTGCGTCGTCTTCTGG+TGG - contig505end:14126-14145 MsG0080048878.01.T01:intron 65.0%
! TGGTGGCGCAATGTGCAGCG+TGG - contig505end:14729-14748 MsG0080048878.01.T01:intron 65.0%
CAACTGCCCGGAAACGCCGC+CGG - contig505end:13653-13672 MsG0080048878.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
contig505end gene 10001 16131 10001 ID=MsG0080048878.01;
contig505end mRNA 10001 16131 10001 ID=MsG0080048878.01.T01;Parent=MsG0080048878.01
contig505end exon 10001 11878 10001 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 10403 11878 10403 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end CDS 11985 12016 11985 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 11985 12016 11985 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 12721 12732 12721 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 12721 12732 12721 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 13780 13828 13780 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 13780 13828 13780 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 14057 14070 14057 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 14057 14070 14057 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 15046 15057 15046 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 15046 15057 15046 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 15233 15246 15233 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 15233 15246 15233 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 15320 15347 15320 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 15320 15347 15320 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 15732 15807 15732 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 15732 15807 15732 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
contig505end CDS 15970 16047 15970 ID=MsG0080048878.01.T01.cds;Parent=MsG0080048878.01.T01
contig505end exon 15970 16131 15970 ID=MsG0080048878.01.T01.exon;Parent=MsG0080048878.01.T01
Gene Sequence

>MsG0080048878.01.T01

ATGAACATGAGAAGGAACATTGAGATGAAATGTCCCAACCAACCTCAAAACGGTGAGTGTTTTGCATGTAAAAAGCTGGACACTATTCATAATATCAACAAAGTTCTCTTTTGTTGGAAAGGAAGGGCAATGATTTGGGAAATGAAGAGCATCGTTGTTCAAGATAGTGGGCGGTGCAAATACACTTGTTTGATCGAGAGGTTAAGTGTGAACCCACAACTAAGATTCCATGTCAGGTGGAGGGCAGTTCCAGTGAGCAAACGCCTTGCATTGAATTTGCATTTAAGAAGACGGGTGGTGCGTCGTCTTCTGGTGGGGACGTGGGAATTATCCGATAATTTTTCGGAGGATTTGTTGCAGCAGATTGGTCTTGGATATGATCGAATGGTGAGGTTTATGGAGAAGGATGATCCGAATTTAAGGCATCCGTATGATTGGTATAAGTATGGTGAATATGGGCCGTATTCTTGGCGTGGGATTGTTGTTGGTGAGCCGGTTAGTGGTGGGATTACGGATGAGTGTGTGACGATAATTAATGAAGTGAAGGATCATGAAGAGTGGGAGGAGATTGAGAAATCTGAAATGGCTGCTGATTTTGGGAAAAAAGTGAAGCAGTTGGATCAAACTAAGTTAAGGTATTTTTGGGTTTTCATTAGGCATCCAAAGTGGAGAGTTTCGGAACTTCCGTGGCAGCAATGGACATTAGTTAGTGAGGTGGTACTTGAAGCTGGTAAACAGAGATTAGATAAGTGGACTTTGATGGGTAGACTTGGGAACAAGGCGAGGTCGTTGGTGGCGCAATGTGCAGCGTGGATGAGACCTGATATTGTGTATGTCAAGCGTCCGGTGTTCCAGTGTAGGTTTGAGCCACAAGATAACTTTTTTAATGCGATAATTCCATTTCTTGATCCTCGCACGGAACAAGATTACCTTTGTCAGTTAGAAAATGATGATGGCAGTGTTGAGACGTGTACTTATTATGGTGGATTGTGTAAACTTGTGAAGGTGAATCAAAAGGCTTTTGTTGATGATGTGGTTAATGCATATCAGAAATTGAGTGATGAAAAAAAGTCAAAATGTTTGGAGTTTCTTTTGGGACATCATCCAGTGCAAATTTTACATCCATATACTAAAGAGTGGAAGGCTAAGTTGGAAGAGATGGAGCTTGGTTGTGATGCTCCTGATGAAGAAGATGATGATATTGTTGGTGATAATGATACTGAGATTATAGATTGGATTGAGGATGAAGGTAGTGACGGTGATGCTGAATTTGATGGTGATGAATTTGATGACGATGATGATCAAGAGATGGAGGAGGAGGATGAGGAGATTGATAATTTTGATATCAATGCAGACCAAGATCTAGTTACGGACATGGAAGAAAGCAAAGATGGTAAATTCCATGCCATGGAAGAAGATGTGAAGGGCTGGAAGGAGTTTCGAAAAGCAACAAGTAGTGCAGAAGCAATAGAAAATATGGCAAGGAAGAGTGTCAAACTCTCTACAGAGCTATATAAGAAGCAAATGATGACAGCGGAGGCAGGGGAAGAAACAACGCGTTCAGTAGACGGAGACGAAACTGTTTTAAGAGGAAAGCGAGCGAAGGTTAGTCCAGAAGAGTGGAAGTATGTTGGGGTCGGTCCGTGGAGAAAAAAGATTAAGAAGAGCAAACTTCCTCCAGATCTATTTCTGCGAGCAGCTGTTCGGCCTTTCAGTTACAGAAATCTTGTTAAAGAGATTGTTTTAACTAGGCATGCAATTTTGGATGGTGACATTGGTAGGAAAGAATAA

Protein sequence

>MsG0080048878.01.T01

MNMRRNIEMKCPNQPQNGECFACKKLDTIHNINKVLFCWKGRAMIWEMKSIVVQDSGRCKYTCLIERLSVNPQLRFHVRWRAVPVSKRLALNLHLRRRVVRRLLVGTWELSDNFSEDLLQQIGLGYDRMVRFMEKDDPNLRHPYDWYKYGEYGPYSWRGIVVGEPVSGGITDECVTIINEVKDHEEWEEIEKSEMAADFGKKVKQLDQTKLRYFWVFIRHPKWRVSELPWQQWTLVSEVVLEAGKQRLDKWTLMGRLGNKARSLVAQCAAWMRPDIVYVKRPVFQCRFEPQDNFFNAIIPFLDPRTEQDYLCQLENDDGSVETCTYYGGLCKLVKVNQKAFVDDVVNAYQKLSDEKKSKCLEFLLGHHPVQILHPYTKEWKAKLEEMELGCDAPDEEDDDIVGDNDTEIIDWIEDEGSDGDAEFDGDEFDDDDDQEMEEEDEEIDNFDINADQDLVTDMEESKDGKFHAMEEDVKGWKEFRKATSSAEAIENMARKSVKLSTELYKKQMMTAEAGEETTRSVDGDETVLRGKRAKVSPEEWKYVGVGPWRKKIKKSKLPPDLFLRAAVRPFSYRNLVKEIVLTRHAILDGDIGRKE*