AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012348.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012348.01.T01 MTR_3g027420 69.935 153 43 2 1 150 383 535 1.24e-66 219
MsG0380012348.01.T01 MTR_7g021000 67.586 145 46 1 1 144 385 529 2.50e-61 202
MsG0380012348.01.T01 MTR_3g027250 65.333 150 51 1 1 150 384 532 3.76e-61 203
MsG0380012348.01.T01 MTR_3g022400 64.935 154 49 2 1 150 376 528 1.56e-60 201
MsG0380012348.01.T01 MTR_3g022400 64.935 154 49 2 1 150 376 528 1.87e-60 201
MsG0380012348.01.T01 MTR_7g021000 67.586 145 46 1 1 144 385 529 1.89e-60 201
MsG0380012348.01.T01 MTR_3g019040 63.333 150 55 0 1 150 399 548 4.72e-60 200
MsG0380012348.01.T01 MTR_3g024460 67.361 144 46 1 1 143 1 144 8.24e-59 194
MsG0380012348.01.T01 MTR_3g025360 61.039 154 55 2 1 150 408 560 8.02e-55 185
MsG0380012348.01.T01 MTR_3g018980 59.722 144 58 0 1 144 399 542 1.41e-54 184
MsG0380012348.01.T01 MTR_3g018980 57.333 150 64 0 1 150 399 548 2.74e-54 184
MsG0380012348.01.T01 MTR_3g022920 58.824 153 59 1 2 150 372 524 5.37e-54 183
MsG0380012348.01.T01 MTR_3g022570 63.889 144 51 1 1 144 421 563 6.17e-54 182
MsG0380012348.01.T01 MTR_3g023030 61.745 149 54 1 1 149 402 547 2.17e-53 181
MsG0380012348.01.T01 MTR_3g015260 56.000 150 65 1 1 150 401 549 1.47e-52 179
MsG0380012348.01.T01 MTR_3g015260 56.000 150 65 1 1 150 401 549 1.99e-52 178
MsG0380012348.01.T01 MTR_3g022940 59.091 154 59 1 1 150 378 531 5.71e-52 177
MsG0380012348.01.T01 MTR_3g027470 61.333 150 57 1 1 150 309 457 2.73e-51 175
MsG0380012348.01.T01 MTR_3g022060 60.784 153 57 1 1 150 301 453 5.18e-51 174
MsG0380012348.01.T01 MTR_3g022130 58.824 153 60 1 1 150 374 526 9.80e-51 174
MsG0380012348.01.T01 MTR_3g022790 56.579 152 64 1 1 150 390 541 2.47e-50 172
MsG0380012348.01.T01 MTR_3g022600 64.706 136 47 1 1 136 400 534 5.94e-50 171
MsG0380012348.01.T01 MTR_3g021170 57.432 148 59 1 1 144 381 528 6.75e-49 168
MsG0380012348.01.T01 MTR_3g022300 62.044 137 51 1 1 137 400 535 9.72e-49 168
MsG0380012348.01.T01 MTR_0425s0020 63.235 136 49 1 1 136 400 534 1.16e-48 167
MsG0380012348.01.T01 MTR_3g021340 56.757 148 58 2 1 144 382 527 1.63e-48 167
MsG0380012348.01.T01 MTR_3g021380 57.718 149 56 3 1 144 369 515 1.84e-48 167
MsG0380012348.01.T01 MTR_3g018930 54.305 151 67 2 1 150 401 550 3.21e-48 166
MsG0380012348.01.T01 MTR_3g035810 57.718 149 56 3 1 144 363 509 5.64e-48 166
MsG0380012348.01.T01 MTR_3g022230 56.494 154 63 1 1 150 400 553 1.09e-47 165
MsG0380012348.01.T01 MTR_3g018930 54.305 151 67 2 1 150 401 550 1.80e-47 164
MsG0380012348.01.T01 MTR_3g027200 59.184 147 57 1 1 144 400 546 3.16e-47 164
MsG0380012348.01.T01 MTR_3g021100 57.432 148 59 1 1 144 386 533 5.83e-46 160
MsG0380012348.01.T01 MTR_3g021400 53.205 156 67 2 1 150 368 523 1.24e-45 159
MsG0380012348.01.T01 MTR_1g078440 54.422 147 62 2 3 144 125 271 5.36e-45 149
MsG0380012348.01.T01 MTR_3g019000 55.263 152 57 3 8 150 395 544 2.12e-44 155
MsG0380012348.01.T01 MTR_3g022870 55.263 152 60 2 1 148 382 529 2.78e-39 141
MsG0380012348.01.T01 MTR_3g022870 55.263 152 60 2 1 148 382 529 3.08e-39 140
MsG0380012348.01.T01 MTR_8g038590 48.936 141 69 2 8 146 410 549 1.08e-37 136
MsG0380012348.01.T01 MTR_8g038570 48.611 144 70 2 13 153 421 563 1.06e-36 133
MsG0380012348.01.T01 MTR_3g023030 45.638 149 44 1 1 149 402 513 5.20e-33 123
MsG0380012348.01.T01 MTR_1g047800 46.250 160 76 4 1 151 391 549 1.16e-32 122
MsG0380012348.01.T01 MTR_3g035960 47.692 130 64 2 1 130 400 525 5.26e-31 117
MsG0380012348.01.T01 MTR_3g035480 51.724 116 54 1 1 116 400 513 6.47e-31 117
MsG0380012348.01.T01 MTR_0002s0110 51.724 116 54 1 1 116 400 513 6.97e-31 117
MsG0380012348.01.T01 MTR_3g035940 51.724 116 54 1 1 116 400 513 7.75e-31 117
MsG0380012348.01.T01 MTR_3g033380 48.462 130 61 3 1 129 404 528 9.33e-31 116
MsG0380012348.01.T01 MTR_2g039040 41.026 156 86 4 2 153 272 425 1.02e-30 116
MsG0380012348.01.T01 MTR_0002s0120 48.800 125 60 2 1 123 183 305 1.23e-30 116
MsG0380012348.01.T01 MTR_3g035840 54.808 104 47 0 13 116 410 513 1.63e-30 115
MsG0380012348.01.T01 MTR_0002s0090 46.970 132 62 3 1 130 400 525 2.65e-30 115
MsG0380012348.01.T01 MTR_3g035500 46.970 132 62 3 1 130 400 525 2.65e-30 115
MsG0380012348.01.T01 MTR_3g032150 47.328 131 63 3 1 130 398 523 4.03e-30 114
MsG0380012348.01.T01 MTR_3g032370 47.328 131 63 3 1 130 398 523 4.71e-30 114
MsG0380012348.01.T01 MTR_2g038930 41.026 156 86 4 2 153 237 390 5.15e-30 114
MsG0380012348.01.T01 MTR_3g030960 50.000 130 59 3 1 129 400 524 2.30e-29 112
MsG0380012348.01.T01 MTR_3g030980 49.231 130 60 3 1 129 400 524 5.83e-29 111
MsG0380012348.01.T01 MTR_3g020890 47.727 132 65 3 1 130 389 518 6.21e-29 111
MsG0380012348.01.T01 MTR_2g038900 42.069 145 79 3 13 153 410 553 6.27e-29 111
MsG0380012348.01.T01 MTR_0005s0200 41.667 144 80 2 13 153 426 568 1.33e-28 110
MsG0380012348.01.T01 MTR_2g014720 51.667 120 55 2 13 130 312 430 1.66e-28 110
MsG0380012348.01.T01 MTR_5g095910 50.833 120 55 3 13 130 409 526 2.36e-28 109
MsG0380012348.01.T01 MTR_2g063777 49.600 125 56 3 8 130 405 524 3.35e-28 109
MsG0380012348.01.T01 MTR_2g014840 48.819 127 59 4 8 130 399 523 4.98e-28 108
MsG0380012348.01.T01 MTR_3g435740 49.593 123 58 2 8 129 449 568 7.22e-28 108
MsG0380012348.01.T01 MTR_3g033110 46.923 130 63 3 1 129 399 523 8.15e-28 108
MsG0380012348.01.T01 MTR_3g032500 48.800 125 60 3 1 123 404 526 9.25e-28 108
MsG0380012348.01.T01 MTR_3g033130 42.236 161 81 5 1 151 385 543 1.23e-27 107
MsG0380012348.01.T01 MTR_3g435720 47.200 125 62 3 1 123 400 522 1.42e-27 107
MsG0380012348.01.T01 MTR_3g032800 50.000 118 55 2 13 129 410 524 2.27e-27 107
MsG0380012348.01.T01 MTR_3g031940 48.000 125 61 3 1 123 404 526 5.23e-27 105
MsG0380012348.01.T01 MTR_3g033240 49.593 123 58 2 8 129 408 527 6.52e-27 105
MsG0380012348.01.T01 MTR_3g032200 50.000 118 57 2 8 123 409 526 1.04e-26 105
MsG0380012348.01.T01 MTR_2g039090 38.255 149 87 3 1 146 383 529 1.06e-26 105
MsG0380012348.01.T01 MTR_3g032760 50.000 118 57 2 8 123 405 522 1.20e-26 105
MsG0380012348.01.T01 MTR_2g038760 40.000 145 82 3 13 153 421 564 1.43e-26 104
MsG0380012348.01.T01 MTR_3g032110 48.387 124 60 2 8 130 406 526 1.69e-26 104
MsG0380012348.01.T01 MTR_3g033860 45.385 130 66 3 1 129 400 525 1.89e-26 104
MsG0380012348.01.T01 MTR_3g034460 45.238 126 64 3 1 123 384 507 2.55e-26 103
MsG0380012348.01.T01 MTR_3g033080 49.167 120 55 3 13 130 409 524 4.49e-26 103
MsG0380012348.01.T01 MTR_8g106550 47.788 113 55 2 19 130 348 457 7.62e-26 102
MsG0380012348.01.T01 MTR_8g030860 41.558 154 81 4 1 147 407 558 1.10e-25 102
MsG0380012348.01.T01 MTR_3g032960 46.400 125 63 3 1 123 400 522 1.10e-25 102
MsG0380012348.01.T01 MTR_3g032340 47.581 124 61 2 8 130 410 530 1.59e-25 101
MsG0380012348.01.T01 MTR_3g007190 46.341 123 60 3 10 130 325 443 1.79e-25 101
MsG0380012348.01.T01 MTR_3g034380 44.444 126 65 3 1 123 400 523 2.84e-25 100
MsG0380012348.01.T01 MTR_3g014080 44.068 118 66 0 13 130 408 525 3.57e-25 100
MsG0380012348.01.T01 MTR_3g014080 44.068 118 66 0 13 130 408 525 3.98e-25 100
MsG0380012348.01.T01 MTR_3g028040 44.444 126 65 3 1 123 400 523 8.23e-25 99.8
MsG0380012348.01.T01 MTR_0267s0070 39.716 141 73 2 18 149 422 559 8.98e-25 99.8
MsG0380012348.01.T01 MTR_3g086070 37.107 159 89 5 1 154 383 535 1.23e-24 99.4
MsG0380012348.01.T01 MTR_5g070960 44.138 145 68 6 1 139 389 526 1.59e-24 99.0
MsG0380012348.01.T01 MTR_3g034430 43.651 126 66 3 1 123 400 523 1.82e-24 98.6
MsG0380012348.01.T01 MTR_0256s0050 37.179 156 93 4 1 154 354 506 1.93e-24 98.6
MsG0380012348.01.T01 MTR_6g047450 41.860 129 69 3 9 132 386 513 2.90e-24 98.2
MsG0380012348.01.T01 MTR_3g015500 42.975 121 65 3 13 130 433 552 3.29e-24 97.8
MsG0380012348.01.T01 MTR_6g084550 42.857 140 77 2 8 146 390 527 5.18e-24 97.4
MsG0380012348.01.T01 MTR_4g050410 41.772 158 81 5 1 153 399 550 9.43e-24 96.7
MsG0380012348.01.T01 MTR_7g078790 45.133 113 59 2 1 112 387 497 9.86e-24 96.7
MsG0380012348.01.T01 MTR_3g036050 39.597 149 81 4 1 146 12 154 1.36e-23 96.3
MsG0380012348.01.T01 MTR_2g014730 50.549 91 44 1 13 103 385 474 3.82e-23 95.1
MsG0380012348.01.T01 MTR_5g072340 40.972 144 74 5 1 139 389 526 4.33e-23 94.7
MsG0380012348.01.T01 MTR_6g046130 39.286 140 80 4 2 138 382 519 4.34e-23 94.7
MsG0380012348.01.T01 MTR_3g014470 39.286 140 79 3 1 139 365 499 5.20e-23 94.4
MsG0380012348.01.T01 MTR_4g050790 41.259 143 73 4 13 146 395 535 6.40e-23 94.4
MsG0380012348.01.T01 MTR_8g011300 32.903 155 95 2 2 147 393 547 6.81e-23 94.4
MsG0380012348.01.T01 MTR_5g035280 35.338 133 81 3 1 130 393 523 7.37e-23 94.0
MsG0380012348.01.T01 MTR_3g026660 36.842 133 79 3 1 130 393 523 7.55e-23 94.0
MsG0380012348.01.T01 MTR_1g037610 38.571 140 80 3 1 139 400 534 8.82e-23 94.0
MsG0380012348.01.T01 MTR_3g014360 39.098 133 77 2 8 139 390 519 9.25e-23 94.0
MsG0380012348.01.T01 MTR_3g015550 41.259 143 73 4 13 146 432 572 9.37e-23 94.0
MsG0380012348.01.T01 MTR_3g015550 41.259 143 73 4 13 146 395 535 9.88e-23 93.6
MsG0380012348.01.T01 MTR_3g014510 39.695 131 73 4 1 130 400 525 1.07e-22 93.6
MsG0380012348.01.T01 MTR_6g046570 38.346 133 75 4 1 130 389 517 1.21e-22 93.6
MsG0380012348.01.T01 MTR_3g014320 37.143 140 82 3 1 139 400 534 1.41e-22 93.2
MsG0380012348.01.T01 MTR_6g046620 39.098 133 77 3 2 132 339 469 1.53e-22 93.2
MsG0380012348.01.T01 MTR_5g034770 37.241 145 84 4 1 142 377 517 1.60e-22 93.2
MsG0380012348.01.T01 MTR_2g078070 37.838 148 85 4 1 141 399 546 2.72e-22 92.4
MsG0380012348.01.T01 MTR_3g014390 36.875 160 84 5 1 149 398 551 2.85e-22 92.4
MsG0380012348.01.T01 MTR_3g015280 40.000 120 68 2 14 130 396 514 2.86e-22 92.4
MsG0380012348.01.T01 MTR_3g014040 44.554 101 56 0 13 113 413 513 3.02e-22 92.4
MsG0380012348.01.T01 MTR_0144s0060 37.405 131 78 3 2 130 382 510 3.98e-22 92.0
MsG0380012348.01.T01 MTR_8g027540 32.716 162 98 4 2 154 396 555 4.24e-22 92.0
MsG0380012348.01.T01 MTR_1g030770 37.607 117 69 2 1 113 395 511 4.52e-22 92.0
MsG0380012348.01.T01 MTR_3g015560 39.231 130 75 2 4 130 386 514 4.73e-22 91.7
MsG0380012348.01.T01 MTR_3g023320 40.845 142 73 5 2 138 385 520 5.11e-22 91.7
MsG0380012348.01.T01 MTR_6g052455 37.209 129 75 3 10 133 280 407 5.16e-22 91.7
MsG0380012348.01.T01 MTR_6g452490 32.903 155 95 3 2 147 394 548 9.07e-22 90.9
MsG0380012348.01.T01 MTR_5g071220 39.474 152 80 4 13 153 399 549 1.08e-21 90.9
MsG0380012348.01.T01 MTR_3g071130 39.823 113 64 1 1 113 383 491 1.12e-21 90.9
MsG0380012348.01.T01 MTR_5g071220 39.474 152 80 4 13 153 399 549 1.15e-21 90.9
MsG0380012348.01.T01 MTR_3g071070 39.823 113 64 1 1 113 178 286 1.31e-21 90.5
MsG0380012348.01.T01 MTR_0511s0020 36.434 129 76 3 10 133 389 516 2.49e-21 89.7
MsG0380012348.01.T01 MTR_5g040900 41.322 121 67 3 13 130 358 477 2.50e-21 89.7
MsG0380012348.01.T01 MTR_0065s0100 34.307 137 86 2 2 135 398 533 3.11e-21 89.4
MsG0380012348.01.T01 MTR_3g070590 37.391 115 68 1 1 115 383 493 4.26e-21 89.0
MsG0380012348.01.T01 MTR_7g013560 37.815 119 64 2 2 117 397 508 4.60e-21 89.0
MsG0380012348.01.T01 MTR_5g071800 37.748 151 81 4 13 152 399 547 5.00e-21 89.0
MsG0380012348.01.T01 MTR_8g011590 34.058 138 85 3 2 135 280 415 6.40e-21 88.6
MsG0380012348.01.T01 MTR_5g035240 37.121 132 79 3 1 130 392 521 6.98e-21 88.6
MsG0380012348.01.T01 MTR_3g020620 36.054 147 90 2 8 153 556 699 7.05e-21 88.6
MsG0380012348.01.T01 MTR_6g046480 40.000 120 69 2 15 132 395 513 7.65e-21 88.2
MsG0380012348.01.T01 MTR_1g022380 39.669 121 69 2 13 130 394 513 7.72e-21 88.2
MsG0380012348.01.T01 MTR_6g052760 36.508 126 74 3 10 130 389 513 1.29e-20 87.8
MsG0380012348.01.T01 MTR_2g062360 35.878 131 82 2 1 130 165 294 1.63e-20 87.4
MsG0380012348.01.T01 MTR_8g011850 39.167 120 69 2 14 130 1457 1575 1.68e-20 87.4
MsG0380012348.01.T01 MTR_8g445980 36.090 133 78 3 1 130 398 526 1.88e-20 87.0
MsG0380012348.01.T01 MTR_8g010440 33.758 157 93 4 2 149 394 548 2.12e-20 87.0
MsG0380012348.01.T01 MTR_3g034650 49.485 97 48 1 17 112 1 97 2.30e-20 87.0
MsG0380012348.01.T01 MTR_1g023600 38.843 121 70 2 13 130 396 515 2.44e-20 87.0
MsG0380012348.01.T01 MTR_4g022460 37.209 129 76 3 6 130 390 517 2.61e-20 86.7
MsG0380012348.01.T01 MTR_5g071470 39.669 121 68 2 13 130 399 517 2.87e-20 86.7
MsG0380012348.01.T01 MTR_5g035530 34.586 133 82 3 1 130 272 402 3.07e-20 86.7
MsG0380012348.01.T01 MTR_8g011280 34.395 157 92 5 2 149 261 415 3.19e-20 86.7
MsG0380012348.01.T01 MTR_8g011320 35.965 114 70 1 2 112 324 437 3.86e-20 86.3
MsG0380012348.01.T01 MTR_7g071940 38.843 121 69 2 13 130 394 512 4.03e-20 86.3
MsG0380012348.01.T01 MTR_5g071570 42.017 119 65 2 15 130 402 519 4.36e-20 86.3
MsG0380012348.01.T01 MTR_4g021690 36.641 131 75 4 6 130 390 518 4.53e-20 86.3
MsG0380012348.01.T01 MTR_4g022480 34.815 135 81 3 1 130 384 516 6.60e-20 85.5
MsG0380012348.01.T01 MTR_3g017620 41.584 101 55 2 13 112 375 472 6.91e-20 85.5
MsG0380012348.01.T01 MTR_8g011170 34.395 157 92 4 2 149 382 536 9.31e-20 85.1
MsG0380012348.01.T01 MTR_3g011620 38.793 116 70 1 8 122 409 524 1.06e-19 85.1
MsG0380012348.01.T01 MTR_5g072250 39.669 121 69 3 13 130 398 517 1.08e-19 85.1
MsG0380012348.01.T01 MTR_1g045960 35.971 139 82 3 13 150 383 515 1.27e-19 84.7
MsG0380012348.01.T01 MTR_5g037450 32.331 133 85 3 1 130 397 527 2.02e-19 84.3
MsG0380012348.01.T01 MTR_5g071823 37.190 121 72 2 13 130 399 518 2.70e-19 84.0
MsG0380012348.01.T01 MTR_5g071850 37.190 121 72 2 13 130 399 518 2.70e-19 84.0
MsG0380012348.01.T01 MTR_4g022560 35.075 134 82 3 1 130 384 516 3.55e-19 83.6
MsG0380012348.01.T01 MTR_8g446950 40.171 117 63 3 15 130 438 548 3.72e-19 83.6
MsG0380012348.01.T01 MTR_7g491180 34.091 132 83 3 1 130 414 543 3.76e-19 83.6
MsG0380012348.01.T01 MTR_7g091190 34.091 132 83 3 1 130 414 543 3.76e-19 83.6
MsG0380012348.01.T01 MTR_0603s0010 40.517 116 65 2 8 122 468 580 4.69e-19 83.2
MsG0380012348.01.T01 MTR_6g046450 35.115 131 81 3 2 130 433 561 5.17e-19 83.2
MsG0380012348.01.T01 MTR_6g046930 34.091 132 83 3 1 130 380 509 6.40e-19 82.8
MsG0380012348.01.T01 MTR_7g089080 39.669 121 67 2 29 149 764 878 6.53e-19 82.8
MsG0380012348.01.T01 MTR_1g008240 42.400 125 65 3 25 146 407 527 7.98e-19 82.4
MsG0380012348.01.T01 MTR_4g055630 39.669 121 69 3 13 130 399 518 8.15e-19 82.4
MsG0380012348.01.T01 MTR_7g091140 34.351 131 84 2 1 130 414 543 1.12e-18 82.0
MsG0380012348.01.T01 MTR_1g047910 34.351 131 84 2 1 130 412 541 1.25e-18 82.0
MsG0380012348.01.T01 MTR_8g011180 32.903 155 95 3 1 147 395 548 1.34e-18 82.0
MsG0380012348.01.T01 MTR_5g037460 33.083 133 84 3 1 130 254 384 1.55e-18 81.6
MsG0380012348.01.T01 MTR_5g071670 38.843 121 70 2 13 130 393 512 1.67e-18 81.6
MsG0380012348.01.T01 MTR_0133s0030 36.441 118 72 2 15 130 396 512 2.18e-18 81.3
MsG0380012348.01.T01 MTR_5g070470 38.655 119 69 3 15 130 401 518 2.65e-18 81.3
MsG0380012348.01.T01 MTR_8g037220 31.210 157 97 4 2 149 1171 1325 2.65e-18 81.3
MsG0380012348.01.T01 MTR_8g037220 31.210 157 97 4 2 149 1392 1546 2.80e-18 80.9
MsG0380012348.01.T01 MTR_4g022540 34.559 136 81 4 1 130 384 517 6.67e-18 79.7
MsG0380012348.01.T01 MTR_8g011550 37.168 113 65 2 2 112 397 505 8.50e-18 79.7
MsG0380012348.01.T01 MTR_5g070490 37.037 135 76 4 1 130 388 518 8.57e-18 79.7
MsG0380012348.01.T01 MTR_5g040770 34.586 133 80 4 1 129 158 287 1.60e-17 79.0
MsG0380012348.01.T01 MTR_5g071780 42.056 107 58 3 13 116 399 504 2.50e-17 78.2
MsG0380012348.01.T01 MTR_6g046440 39.823 113 58 4 1 108 383 490 2.66e-17 78.2
MsG0380012348.01.T01 MTR_3g435220 34.752 141 88 2 13 153 373 509 2.69e-17 78.2
MsG0380012348.01.T01 MTR_6g081940 35.652 115 63 1 15 129 101 204 3.02e-17 77.4
MsG0380012348.01.T01 MTR_0133s0020 39.604 101 58 2 15 113 394 493 3.19e-17 77.8
MsG0380012348.01.T01 MTR_3g435210 40.594 101 56 2 13 112 218 315 3.58e-17 77.8
MsG0380012348.01.T01 MTR_7g084790 33.333 132 84 4 1 130 160 289 6.56e-17 77.0
MsG0380012348.01.T01 MTR_1g047870 32.061 131 87 2 1 130 174 303 7.90e-17 76.6
MsG0380012348.01.T01 MTR_6g016430 40.000 100 56 2 15 110 405 504 1.40e-16 76.3
MsG0380012348.01.T01 MTR_4g094540 36.667 120 60 2 1 104 407 526 2.82e-16 75.1
MsG0380012348.01.T01 MTR_8g036195 35.766 137 60 4 1 132 384 497 2.90e-16 75.1
MsG0380012348.01.T01 MTR_5g035300 35.780 109 65 3 1 106 393 499 5.03e-16 74.3
MsG0380012348.01.T01 MTR_0005s0230 47.727 88 41 2 26 110 233 318 5.82e-16 74.3
MsG0380012348.01.T01 MTR_8g011600 32.203 118 67 2 1 118 229 333 1.38e-15 73.2
MsG0380012348.01.T01 MTR_3g022740 64.815 54 19 0 90 143 205 258 1.61e-15 73.2
MsG0380012348.01.T01 MTR_1g078490 35.780 109 69 1 1 108 396 504 4.00e-15 72.0
MsG0380012348.01.T01 MTR_7g078640 36.697 109 68 1 1 108 403 511 2.51e-14 69.7
MsG0380012348.01.T01 MTR_5g035480 34.862 109 67 2 25 130 405 512 3.46e-14 69.3
MsG0380012348.01.T01 MTR_7g091550 31.429 140 92 3 1 139 413 549 7.04e-14 68.6
MsG0380012348.01.T01 MTR_7g078300 35.780 109 69 1 1 108 403 511 7.49e-14 68.2
MsG0380012348.01.T01 MTR_7g491190 30.435 138 69 4 1 130 376 494 1.21e-13 67.8
MsG0380012348.01.T01 MTR_7g091200 30.435 138 69 4 1 130 395 513 1.24e-13 67.8
MsG0380012348.01.T01 MTR_7g091110 30.000 130 69 1 1 130 415 522 1.47e-13 67.4
MsG0380012348.01.T01 MTR_4g119195 35.455 110 69 1 1 108 406 515 1.75e-13 67.0
MsG0380012348.01.T01 MTR_5g035230 36.893 103 60 3 1 100 371 471 1.80e-13 67.0
MsG0380012348.01.T01 MTR_4g119195 35.455 110 69 1 1 108 406 515 2.06e-13 67.0
MsG0380012348.01.T01 MTR_5g076840 35.455 110 69 1 1 108 408 517 3.21e-13 66.2
MsG0380012348.01.T01 MTR_8g043600 39.241 79 48 0 6 84 351 429 4.81e-13 65.9
MsG0380012348.01.T01 MTR_5g037590 36.047 86 54 1 27 111 391 476 1.67e-12 64.3
MsG0380012348.01.T01 MTR_3g463180 45.833 72 38 1 13 84 298 368 3.92e-12 63.2
MsG0380012348.01.T01 MTR_5g028750 39.394 66 40 0 19 84 356 421 1.91e-11 61.2
MsG0380012348.01.T01 MTR_0230s0010 30.000 110 73 3 26 133 350 457 2.29e-11 61.2
MsG0380012348.01.T01 MTR_8g039260 38.710 93 53 2 64 153 1 92 3.41e-11 60.5
MsG0380012348.01.T01 MTR_7g078630 32.432 111 61 1 1 111 320 416 3.42e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012348.01.T01 AT3G14460 52.991 117 54 1 13 129 405 520 7.71e-34 125
MsG0380012348.01.T01 AT3G14470 36.022 186 80 2 1 151 401 582 3.48e-30 115
MsG0380012348.01.T01 AT3G14470 36.022 186 80 2 1 151 401 582 3.48e-30 115
MsG0380012348.01.T01 AT5G47250 30.612 98 64 1 14 111 392 485 2.28e-12 63.9
MsG0380012348.01.T01 AT5G47260 29.060 117 79 3 8 123 377 490 4.91e-11 60.1
MsG0380012348.01.T01 AT5G63020 32.203 118 74 3 5 121 384 496 9.93e-11 59.3

Find 28 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCCAAGGGTTATGTGTT+TGG 0.335470 3:-15232529 MsG0380012348.01.T01:CDS
AAGAAGAGATTGTCAAGCTT+TGG 0.356511 3:-15232504 MsG0380012348.01.T01:CDS
CTTCAGATTGGAAGGAAGAT+TGG 0.382467 3:+15232576 None:intergenic
GAATTCACATTCTAGTAGTA+TGG 0.400461 3:-15232374 MsG0380012348.01.T01:CDS
CTCAAAGAACACGTCACATT+TGG 0.407522 3:-15232264 MsG0380012348.01.T01:CDS
AGAAACATTTGTAAGATTGA+GGG 0.414216 3:-15232206 MsG0380012348.01.T01:CDS
CACATAACCCTTGGGAAACA+TGG 0.416415 3:+15232534 None:intergenic
TAGAAACATTTGTAAGATTG+AGG 0.416730 3:-15232207 MsG0380012348.01.T01:CDS
TGCACTATATCACCCTCAAT+TGG 0.429634 3:+15232295 None:intergenic
AATGTGAATTCACAGATTGT+TGG 0.443540 3:+15232386 None:intergenic
TGCAAAACAACGCTTCAGAT+TGG 0.456882 3:+15232564 None:intergenic
CAAATGTGACGTGTTCTTTG+AGG 0.458909 3:+15232265 None:intergenic
GGATAACTCAATCTCAATAA+CGG 0.463151 3:+15232598 None:intergenic
TTCAGATTGGAAGGAAGATT+GGG 0.469225 3:+15232577 None:intergenic
GATAACTCAATCTCAATAAC+GGG 0.475272 3:+15232599 None:intergenic
TTTCCAAACACATAACCCTT+GGG 0.476683 3:+15232526 None:intergenic
AAATGTGACGTGTTCTTTGA+GGG 0.480564 3:+15232266 None:intergenic
ACACATAACTGAAGAAGAGT+TGG 0.493237 3:-15232449 MsG0380012348.01.T01:CDS
CACATAACTGAAGAAGAGTT+GGG 0.499727 3:-15232448 MsG0380012348.01.T01:CDS
GATTTAGCAAAATCAGTGTC+AGG 0.519412 3:-15232331 MsG0380012348.01.T01:CDS
ATATTGTTCCATGTTTCCCA+AGG 0.519955 3:-15232542 MsG0380012348.01.T01:CDS
GTCAAGCTTTGGATGACAGA+AGG 0.535228 3:-15232493 MsG0380012348.01.T01:CDS
TGAGGGTTTACGTGGACTGA+TGG 0.581604 3:-15232189 None:intergenic
AAACAACGCTTCAGATTGGA+AGG 0.585788 3:+15232568 None:intergenic
TGATATGTGGCATGTATCGA+AGG 0.594277 3:-15232638 None:intergenic
TATTGTTCCATGTTTCCCAA+GGG 0.608147 3:-15232541 MsG0380012348.01.T01:CDS
TGTAAGATTGAGGGTTTACG+TGG 0.630038 3:-15232197 MsG0380012348.01.T01:CDS
GATATGTGGCATGTATCGAA+GGG 0.744752 3:-15232637 MsG0380012348.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGAAACATTTGTAAGATTGA+GGG - Chr3:15232620-15232639 MsG0380012348.01.T01:CDS 25.0%
! AGATTGTTGGAAAAATGAAA+TGG + Chr3:15232430-15232449 None:intergenic 25.0%
! TAGAAACATTTGTAAGATTG+AGG - Chr3:15232619-15232638 MsG0380012348.01.T01:CDS 25.0%
!!! AGAATTTTGTTTTCCAATTG+AGG - Chr3:15232518-15232537 MsG0380012348.01.T01:CDS 25.0%
!!! GAATTTTGTTTTCCAATTGA+GGG - Chr3:15232519-15232538 MsG0380012348.01.T01:CDS 25.0%
AATGTGAATTCACAGATTGT+TGG + Chr3:15232443-15232462 None:intergenic 30.0%
GAATTCACATTCTAGTAGTA+TGG - Chr3:15232452-15232471 MsG0380012348.01.T01:CDS 30.0%
GATAACTCAATCTCAATAAC+GGG + Chr3:15232230-15232249 None:intergenic 30.0%
GGATAACTCAATCTCAATAA+CGG + Chr3:15232231-15232250 None:intergenic 30.0%
AAATGTGACGTGTTCTTTGA+GGG + Chr3:15232563-15232582 None:intergenic 35.0%
AAGAAGAGATTGTCAAGCTT+TGG - Chr3:15232322-15232341 MsG0380012348.01.T01:CDS 35.0%
ACACATAACTGAAGAAGAGT+TGG - Chr3:15232377-15232396 MsG0380012348.01.T01:CDS 35.0%
ATATTGTTCCATGTTTCCCA+AGG - Chr3:15232284-15232303 MsG0380012348.01.T01:CDS 35.0%
CACATAACTGAAGAAGAGTT+GGG - Chr3:15232378-15232397 MsG0380012348.01.T01:CDS 35.0%
GATTTAGCAAAATCAGTGTC+AGG - Chr3:15232495-15232514 MsG0380012348.01.T01:CDS 35.0%
TATTGTTCCATGTTTCCCAA+GGG - Chr3:15232285-15232304 MsG0380012348.01.T01:CDS 35.0%
TTCAGATTGGAAGGAAGATT+GGG + Chr3:15232252-15232271 None:intergenic 35.0%
TTTCCAAACACATAACCCTT+GGG + Chr3:15232303-15232322 None:intergenic 35.0%
! GGAAAAATGAAATGGACTCA+AGG + Chr3:15232422-15232441 None:intergenic 35.0%
! TTTTCCAAACACATAACCCT+TGG + Chr3:15232304-15232323 None:intergenic 35.0%
AAACAACGCTTCAGATTGGA+AGG + Chr3:15232261-15232280 None:intergenic 40.0%
CAAATGTGACGTGTTCTTTG+AGG + Chr3:15232564-15232583 None:intergenic 40.0%
CTCAAAGAACACGTCACATT+TGG - Chr3:15232562-15232581 MsG0380012348.01.T01:CDS 40.0%
CTTCAGATTGGAAGGAAGAT+TGG + Chr3:15232253-15232272 None:intergenic 40.0%
TGCAAAACAACGCTTCAGAT+TGG + Chr3:15232265-15232284 None:intergenic 40.0%
TGCACTATATCACCCTCAAT+TGG + Chr3:15232534-15232553 None:intergenic 40.0%
TGTAAGATTGAGGGTTTACG+TGG - Chr3:15232629-15232648 MsG0380012348.01.T01:CDS 40.0%
TTTCCCAAGGGTTATGTGTT+TGG - Chr3:15232297-15232316 MsG0380012348.01.T01:CDS 40.0%
CACATAACCCTTGGGAAACA+TGG + Chr3:15232295-15232314 None:intergenic 45.0%
!! GTCAAGCTTTGGATGACAGA+AGG - Chr3:15232333-15232352 MsG0380012348.01.T01:CDS 45.0%
Chromosome Type Strat End Strand Name
Chr3 gene 15232192 15232656 15232192 ID=MsG0380012348.01;Name=MsG0380012348.01
Chr3 mRNA 15232192 15232656 15232192 ID=MsG0380012348.01.T01;Parent=MsG0380012348.01;Name=MsG0380012348.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|154
Chr3 exon 15232192 15232656 15232192 ID=MsG0380012348.01.T01:exon:837;Parent=MsG0380012348.01.T01
Chr3 CDS 15232192 15232656 15232192 ID=MsG0380012348.01.T01:cds;Parent=MsG0380012348.01.T01
Gene Sequence

>MsG0380012348.01.T01

ATGTGGCATGTATCGAAGGGTGATGATGAAAATAACCCGTTATTGAGATTGAGTTATCCCAATCTTCCTTCCAATCTGAAGCGTTGTTTTGCATATTGTTCCATGTTTCCCAAGGGTTATGTGTTTGGAAAAGAAGAGATTGTCAAGCTTTGGATGACAGAAGGTTTACTGAAGTGTTCAAGAAGACACATAACTGAAGAAGAGTTGGGTTTTGAATTCTTCGATGACCTTGAGTCCATTTCATTTTTCCAACAATCTGTGAATTCACATTCTAGTAGTATGGTAATGCACGATCTTGTCAATGATTTAGCAAAATCAGTGTCAGGAGAATTTTGTTTTCCAATTGAGGGTGATATAGTGCAAGATATCCCTCAAAGAACACGTCACATTTGGTGCTCTCTTGATTCAAAAGATTCTAGAAAAGTATTAGAAACATTTGTAAGATTGAGGGTTTACGTGGACTGA
Protein sequence

>MsG0380012348.01.T01

MWHVSKGDDENNPLLRLSYPNLPSNLKRCFAYCSMFPKGYVFGKEEIVKLWMTEGLLKCSRRHITEEELGFEFFDDLESISFFQQSVNSHSSSMVMHDLVNDLAKSVSGEFCFPIEGDIVQDIPQRTRHIWCSLDSKDSRKVLETFVRLRVYVD*