AlfalfaGEDB | MsG0880044573.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044573.01

KEGG: -
GO: GO:0043531
PFAM: PF00931

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044573.01.T01	XP_013445584.1	91.933	595	47	1	347	940	1	595	0	1141

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044573.01.T01	Q8L6Y1	62.179	156	43	1	192	331	29	184	6.74E-57	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044573.01.T01	A0A072U1C5	91.933	595	47	1	347	940	1	595	0.0	1141

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0880044573.01	0.807932	3.969777e-50	2.239679e-47
MsG0080047944.01	MsG0880044573.01	0.806290	8.837143e-50	4.778585e-47
MsG0080047957.01	MsG0880044573.01	0.811225	7.788769e-51	4.794228e-48
MsG0080047959.01	MsG0880044573.01	0.812975	3.234336e-51	2.085726e-48
MsG0080048231.01	MsG0880044573.01	0.805085	1.582948e-49	8.298931e-47
MsG0080048461.01	MsG0880044573.01	0.826478	2.653698e-54	2.491434e-51
MsG0080048462.01	MsG0880044573.01	0.814098	1.831733e-51	1.217764e-48
MsG0080048464.01	MsG0880044573.01	0.822384	2.438674e-53	2.038162e-50
MsG0080048515.01	MsG0880044573.01	0.807065	6.062498e-50	3.344124e-47
MsG0080048672.01	MsG0880044573.01	0.830137	3.478913e-55	3.633585e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044573.01.T01	MTR_8g464870	91.933	595	47	1	347	940	1	595	0.0	1141
MsG0880044573.01.T01	MTR_3g055230	62.752	596	218	4	347	939	1	595	0.0	733
MsG0880044573.01.T01	MTR_3g055230	62.752	596	218	4	347	939	1	595	0.0	733
MsG0880044573.01.T01	MTR_3g055230	62.752	596	218	4	347	939	1	595	0.0	732
MsG0880044573.01.T01	MTR_3g055230	62.752	596	218	4	347	939	1	595	0.0	731
MsG0880044573.01.T01	MTR_3g055210	59.801	602	217	7	347	939	1	586	0.0	681
MsG0880044573.01.T01	MTR_3g053180	57.119	597	246	6	347	939	1	591	0.0	668
MsG0880044573.01.T01	MTR_3g053180	57.119	597	246	6	347	939	1	591	0.0	668
MsG0880044573.01.T01	MTR_3g053200	58.824	595	237	4	347	938	1	590	0.0	667
MsG0880044573.01.T01	MTR_5g092190	40.244	574	316	13	347	914	1	553	2.62e-118	398

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044573.01.T01	AT3G20630	62.179	156	43	1	192	331	29	184	6.87e-58	214
MsG0880044573.01.T01	AT5G05400	28.525	617	386	18	344	933	1	589	7.43e-52	197
MsG0880044573.01.T01	AT4G27190	35.673	342	203	10	502	832	145	480	1.38e-51	197
MsG0880044573.01.T01	AT5G05400	32.870	432	254	12	519	933	8	420	5.48e-47	180
MsG0880044573.01.T01	AT5G05400	32.870	432	254	12	519	933	8	420	5.48e-47	180
MsG0880044573.01.T01	AT5G43730	29.264	598	366	19	372	933	20	596	3.18e-44	173
MsG0880044573.01.T01	AT5G43730	29.264	598	366	19	372	933	20	596	3.18e-44	173
MsG0880044573.01.T01	AT5G43730	29.264	598	366	19	372	933	20	596	3.18e-44	173
MsG0880044573.01.T01	AT5G43730	29.264	598	366	19	372	933	20	596	3.18e-44	173
MsG0880044573.01.T01	AT5G43730	29.264	598	366	19	372	933	20	596	3.18e-44	173

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Find 184 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTACTTGCTTTCAA+GGG	0.572605	8:-44844361	MsG0880044573.01.T01:CDS
AAAATCCAATGCTGAATGGA+TGG	0.593234	8:-44843568	MsG0880044573.01.T01:CDS
AAACCAACACTATTGGCTAT+AGG	0.479232	8:-44847336	MsG0880044573.01.T01:intron
AAAGCGTGCATGGAATGTAA+AGG	0.586227	8:-44843633	MsG0880044573.01.T01:CDS
AACATCCGCCATCGAACCAA+AGG	0.590556	8:+44844646	None:intergenic
AAGGAAAATCCAATGCTGAA+TGG	0.504751	8:-44843572	MsG0880044573.01.T01:CDS
AATAGTGTTGGTTTCTTAGA+AGG	0.292223	8:+44847345	None:intergenic
AATGTAGCAATAGAATTTCA+AGG	0.386681	8:+44843049	None:intergenic
AATGTGTTCTATGTTTCCAG+AGG	0.602694	8:-44843421	MsG0880044573.01.T01:CDS
AATTTCAGATGTCAGAAGGT+GGG	0.582655	8:-44847494	MsG0880044573.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTAAAAGAGAGCAGTT+AGG	+	Chr8:44846136-44846155	None:intergenic	30.0%
AAAACTCCATAAGACCAATA+AGG	+	Chr8:44844194-44844213	None:intergenic	30.0%
AAAGCTCAGTCAGATATAAA+CGG	+	Chr8:44845858-44845877	None:intergenic	30.0%
AACATAAGAGACGTCAAAAT+TGG	+	Chr8:44843728-44843747	None:intergenic	30.0%
AAGGAGTTAACAGCATATTA+AGG	+	Chr8:44847181-44847200	None:intergenic	30.0%
AATATTCCAAGAGCAAAAAG+TGG	+	Chr8:44844254-44844273	None:intergenic	30.0%
AATTTCTCCAAGTCATTAGA+TGG	-	Chr8:44849091-44849110	MsG0880044573.01.T01:intron	30.0%
ACAACTCTTGTTACTGAAAT+TGG	-	Chr8:44848674-44848693	MsG0880044573.01.T01:intron	30.0%
ACACAAGTATGATAACAAGT+TGG	+	Chr8:44844464-44844483	None:intergenic	30.0%
ACTACTAATGAAATTCCCAA+TGG	+	Chr8:44843421-44843440	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	44842873	44849906	44842873	ID=MsG0880044573.01;Name=MsG0880044573.01
Chr8	mRNA	44842873	44849906	44842873	ID=MsG0880044573.01.T01;Parent=MsG0880044573.01;Name=MsG0880044573.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|0\|0\|0.16\|0.8\|0.66\|6\|0\|940
Chr8	exon	44849381	44849906	44849381	ID=MsG0880044573.01.T01:exon:8142;Parent=MsG0880044573.01.T01
Chr8	exon	44848496	44848554	44848496	ID=MsG0880044573.01.T01:exon:8141;Parent=MsG0880044573.01.T01
Chr8	exon	44847337	44847508	44847337	ID=MsG0880044573.01.T01:exon:8140;Parent=MsG0880044573.01.T01
Chr8	exon	44846693	44846762	44846693	ID=MsG0880044573.01.T01:exon:8139;Parent=MsG0880044573.01.T01
Chr8	exon	44846329	44846524	44846329	ID=MsG0880044573.01.T01:exon:8138;Parent=MsG0880044573.01.T01
Chr8	exon	44842873	44844672	44842873	ID=MsG0880044573.01.T01:exon:8137;Parent=MsG0880044573.01.T01
Chr8	CDS	44849381	44849906	44849381	ID=MsG0880044573.01.T01:cds;Parent=MsG0880044573.01.T01
Chr8	CDS	44848496	44848554	44848496	ID=MsG0880044573.01.T01:cds;Parent=MsG0880044573.01.T01
Chr8	CDS	44847337	44847508	44847337	ID=MsG0880044573.01.T01:cds;Parent=MsG0880044573.01.T01
Chr8	CDS	44846693	44846762	44846693	ID=MsG0880044573.01.T01:cds;Parent=MsG0880044573.01.T01
Chr8	CDS	44846329	44846524	44846329	ID=MsG0880044573.01.T01:cds;Parent=MsG0880044573.01.T01
Chr8	CDS	44842873	44844672	44842873	ID=MsG0880044573.01.T01:cds;Parent=MsG0880044573.01.T01

Gene Sequence

>MsG0880044573.01.T01

ATGGCCCAATACGTTCATGACAAAGAAATGCTCGCTAGGCTAAATGCTCTGGGTATCGATGCGAAAATTTTCTCCACCTTTGAACAAGCAACCTTGTTGTTGAATTTCCTCGAGCCACAACCTGAGCGAAGTAACCGCCTTCCAACAAACGAGTTGTTCTTAGAGAATCAGAATCACAAAAACATGGCTTTTGGCCACCTTTATCACCTGCTTTTAATGACGGTTGGAAGGAGGCGGCGGGAATTGGTTGATGATGAGACAACTCGCAATGAGGTTTTGATGCAGATACGTTTTTGTCGTATGTCAAGTTTTAATGGTCCATGGTTGGACGAACTTGATGAATTTTTGAAGAATGTTGAATACACAGACGTCGTTGGTGCTGCTGATAGATTTCAAATGTTGTCGCTTTCAAATGTTGTCGCTGAACGTGAGTTTCGCGTGAAGCAGGCCGAAGACCGCCTCTCTGCTGCCAACTTCGCCGAAGTTGTAGCTTCTGGCACAGTTCTTCACATCGAGAATGAAAGAACTGCTTTTACTACTGGTGCTTTCATGCCACTTTTTGCTCTTGGAATATTTCATGCTCTTATGTCAGAAGGTGGGTTGTTCATCGATTTGAACACTTTTCTTGCTTTCGGAAAGGATTACATTGGTTGGAATTATGACAAGACTGGAAATCCGGTCTATTTGCATATAAAGCAGACAAAGAAGTTGGTTCCAGAAGATAGGCCTTCTAAGAAACCAACACTATTGGCTATAGGTCTTGATGGGGGATTTGAGAACGATGAGCCTGAATATGAAGAAACTCATAGCATAGTTATACTACCTGAGTTGGCAGTTGATGCAATCTTACTAGCCGATGGTGCTGAACGTAAGGCGCAACTTGCAGCTTGGGCGGCTGATGAGAAACAAGTTACTGCCTATGCAGTGAGTTTACAACAGATTGACAATGGCGTTGTTATTCTGCCGTCTGGGTGGAAATGTGCCAAGTGTGATATCAAAATGAAACAGATTGACATGATGTTTAATACCTTTGGTTCGATGGCGGATGTTGCTATTTCCATAACGGCTACTGTGGTTGAACGTTTGGCGGGACCAGTAATACGCGAAGGAAAATGTTTTCTTTGCGTTTGTAAGTTTATTGGTGATCTTGAGAATGAAAAGAAGGAGCTGGTATTCGAAAGGGATAACTTGTTGGATCGTGTTGAACAAGCCAAACATAGAGCCGAAGAAATTGAGATACCGGTGGGAAAATGGATAGATGATGTGAATAATCTACTGCAAGAGGTGGAAGATTTGGAACAAAGGATGAGAGAAAATACTACTTGCTTTCAAGGGCGGTGTCCAACTTGGAAAAGATATCGTTTATGCAAGCAAATGGTGAAGAAGATAGAGGCGATACGAAAATTCAAAGGTACAAGCAATATTAAGCCGTTTTCTCATCGCGCTCCTCTTCTTGGCATACAATATCAATCATCAGAGGATTTTACTTATTTTGAATCAACAAAAGCGGCTAGCAGTCAACTATTGGAGGCACTTCGAGACGAGGACATCTACATTATAGGAGTGTATGGAATGGGCGGAACTGGGAAAACAACTCTTGTTACTGAAATTGGTAAAATGGTTGAAGAATCAAATATTTTTGACAAGGCTATATTAATTACAGTGTCTCAAACTCCTAATGTTAGAGATATTCAAGGAAAAATAGCCGATATTTTAAACTTGAAATTGGAGGAAGAAAGTGATGAGGGAAGAGCACAACGTTTGTGGTTGAGTTTGAAAGAAAAGAAGCGGATTCTCGTAATAGTAGATGATTTATGGAGAGAGTTTGATTTGAATGATGTAGGGATTCACTTAGACAATGATAACAAGGGTGCATGGAAGATCCTTGTAACCACTCGTAATCAACATGTATGTGATTTGATGTACTGTCAAAAGAAGATTCATCTAGGACTCTTAGATGAAGATGAGTCTTGGTCTTTGTTCCGAAAACATGCACATATTGATGAAAATTTCTCCAAGTCATTAGATGGTGTGCCACAAAAAGCGTGCATGGAATGTAAAGGACTACCTATAGCAATTAAAGCAGTTGGATCTTCTTTAAAAGGAAAATCCAATGCTGAATGGATGGTTGCATTTCACAGATTGAGAAATGCAGAGACCATTGATGATAAGGAGGAAGGAGTGGGAGTTGCTTTAAGTTGTCTTAAATTAAGCTATGATTATTTATCAAACAAAGAAAAACTTATCTTCTTAATGTGTTCTATGTTTCCAGAGGATTATAAAATCTCAATAGAAGACATGATCCGATATGCGGTAGGGCTTGGACTAGGAGAAGGATTTTCGTTAGAGTCGGCAAGAGATGAGATCGAAGCAACGATAAACAGACTTTTGGAATCATGTTTGTTGATGCATACTGGGGAAAGCAAAGAGTACGTGAAGATGCATGATACAGTTCGTGACACAGCCTTATGGATTGCAAAGAGATCAGACAATAACAAAATTGTGGTAAATGTTGACAAACCAATTAGCACTTTGGAAATGGATGATAGTATAAGAGATTGTTTTGCTCTATCTTCGTGGTATTTGGAGCAAGATAAAAAATTTCATCAATTGCATGCTCCAAACCTTGAAATTCTATTGCTACATTCTAGCAGGTGGAGGTGGAAGTGCTTTGATTTATCGCGTGCAACCTTTGAAGGAATAAAGGGGCTGAAGGTTTTTTCTCTAATCAATAATGCCTATGGTAGCCCTCATTATACTTGCCTTCTTAACCATTCATTGACAAATCTTCAAACTCTACGCTTGAATGGATTTAAGAATTAG

Protein sequence

>MsG0880044573.01.T01

MAQYVHDKEMLARLNALGIDAKIFSTFEQATLLLNFLEPQPERSNRLPTNELFLENQNHKNMAFGHLYHLLLMTVGRRRRELVDDETTRNEVLMQIRFCRMSSFNGPWLDELDEFLKNVEYTDVVGAADRFQMLSLSNVVAEREFRVKQAEDRLSAANFAEVVASGTVLHIENERTAFTTGAFMPLFALGIFHALMSEGGLFIDLNTFLAFGKDYIGWNYDKTGNPVYLHIKQTKKLVPEDRPSKKPTLLAIGLDGGFENDEPEYEETHSIVILPELAVDAILLADGAERKAQLAAWAADEKQVTAYAVSLQQIDNGVVILPSGWKCAKCDIKMKQIDMMFNTFGSMADVAISITATVVERLAGPVIREGKCFLCVCKFIGDLENEKKELVFERDNLLDRVEQAKHRAEEIEIPVGKWIDDVNNLLQEVEDLEQRMRENTTCFQGRCPTWKRYRLCKQMVKKIEAIRKFKGTSNIKPFSHRAPLLGIQYQSSEDFTYFESTKAASSQLLEALRDEDIYIIGVYGMGGTGKTTLVTEIGKMVEESNIFDKAILITVSQTPNVRDIQGKIADILNLKLEEESDEGRAQRLWLSLKEKKRILVIVDDLWREFDLNDVGIHLDNDNKGAWKILVTTRNQHVCDLMYCQKKIHLGLLDEDESWSLFRKHAHIDENFSKSLDGVPQKACMECKGLPIAIKAVGSSLKGKSNAEWMVAFHRLRNAETIDDKEEGVGVALSCLKLSYDYLSNKEKLIFLMCSMFPEDYKISIEDMIRYAVGLGLGEGFSLESARDEIEATINRLLESCLLMHTGESKEYVKMHDTVRDTALWIAKRSDNNKIVVNVDKPISTLEMDDSIRDCFALSSWYLEQDKKFHQLHAPNLEILLLHSSRWRWKCFDLSRATFEGIKGLKVFSLINNAYGSPHYTCLLNHSLTNLQTLRLNGFKN*