AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012875.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012875.01.T01 MTR_3g033530 96.000 350 14 0 1 350 1 350 0.0 709
MsG0380012875.01.T01 MTR_6g087880 30.723 166 109 4 174 335 131 294 1.97e-16 79.3
MsG0380012875.01.T01 MTR_6g081930 25.121 207 132 6 129 329 87 276 1.25e-15 76.6
MsG0380012875.01.T01 MTR_2g101870 25.080 311 189 10 29 335 27 297 2.15e-15 76.3
MsG0380012875.01.T01 MTR_8g106580 29.032 155 98 4 182 329 129 278 1.94e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012875.01.T01 AT3G08490 38.769 325 132 8 29 350 11 271 1.21e-59 193
MsG0380012875.01.T01 AT3G24600 29.730 148 102 2 179 325 135 281 9.84e-14 71.2
MsG0380012875.01.T01 AT1G45688 23.984 246 148 7 129 350 111 341 1.34e-12 68.6
MsG0380012875.01.T01 AT5G42860 23.265 245 151 6 129 350 89 319 1.69e-12 67.8
MsG0380012875.01.T01 AT1G45688 30.252 119 71 3 129 247 111 217 4.31e-11 62.8

Find 112 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTCTCTCCCACTTATT+TGG 0.159382 3:-26168708 MsG0380012875.01.T01:five_prime_UTR
ACTCACCTCAAAGGAGATTT+TGG 0.164708 3:+26168095 None:intergenic
CTGATTCATGTGCTTGGATT+TGG 0.255227 3:-26168197 MsG0380012875.01.T01:CDS
ATTCTCTACGATTAAATTCA+TGG 0.258492 3:+26167912 None:intergenic
CATCTTTCCATTGCAATTAG+AGG 0.258908 3:-26166631 MsG0380012875.01.T01:CDS
GAAAATTTCATATCCATCTT+AGG 0.268221 3:+26167856 None:intergenic
CCTTCCCCTAGTTTAAATTC+TGG 0.277887 3:+26167982 None:intergenic
TGGAGAGTTATGGTGAGTTT+TGG 0.299754 3:-26168162 MsG0380012875.01.T01:CDS
AAGATTACTTGTATCAATAT+TGG 0.308847 3:+26166540 None:intergenic
TGTTATGATGCATACCATTA+TGG 0.316626 3:+26168649 None:intergenic
GGGAGACTGTGGAGGGGCTT+TGG 0.317147 3:+26168565 None:intergenic
GATGGGTCTCCGATCGGTTC+GGG 0.326823 3:+26168481 None:intergenic
AAGTTGATTCGGCGTCGTTT+TGG 0.330661 3:+26168511 None:intergenic
TACAAGTACTATTAAATGCT+TGG 0.358819 3:+26166412 None:intergenic
TCTCCGATCGGTTCGGGGAG+TGG 0.369741 3:+26168487 None:intergenic
TTCTCTCCCACTTATTTGGC+TGG 0.378005 3:-26168704 MsG0380012875.01.T01:five_prime_UTR
GCGGCAAAGGGCAAATCGGC+TGG 0.385780 3:+26168431 None:intergenic
CGATGGGTCTCCGATCGGTT+CGG 0.389192 3:+26168480 None:intergenic
CTGGGTTCTTGTTCGTGGGC+CGG 0.391193 3:+26168450 None:intergenic
GGATTTGGCTGCAAGTTACT+TGG 0.400048 3:-26168182 MsG0380012875.01.T01:CDS
ATCGGCTGGGTTCTTGTTCG+TGG 0.400071 3:+26168445 None:intergenic
ACAATAATGTCTTACCATAA+TGG 0.402119 3:-26168663 MsG0380012875.01.T01:exon
CTCTAATTGCAATGGAAAGA+TGG 0.417898 3:+26166632 None:intergenic
GAAAGAGTTGTTGGAGCCTC+GGG 0.420864 3:+26168398 None:intergenic
ACAAGTACTATTAAATGCTT+GGG 0.425815 3:+26166413 None:intergenic
AACTTAGGCTTTACAAGTGC+TGG 0.443593 3:+26166495 None:intergenic
GCAAGTTACTTGGAGAGTTA+TGG 0.444531 3:-26168172 MsG0380012875.01.T01:CDS
CGTGGGCCGGATTTGTCCGA+TGG 0.446885 3:+26168463 None:intergenic
GTTGTTGGAGCCTCGGGAGG+AGG 0.450466 3:+26168404 None:intergenic
AGGAGAGAAAGTGGTAAGAA+AGG 0.452505 3:-26166284 MsG0380012875.01.T01:three_prime_UTR
GCTTGTCTATGCTATTTGCA+TGG 0.459271 3:+26168544 None:intergenic
AGTATCCACACGGGTAGGTT+TGG 0.463829 3:+26168592 None:intergenic
TGAAAATGCAAAGGGTAAGA+TGG 0.472009 3:+26167834 None:intergenic
TTCTTTGCCTCTAATTGCAA+TGG 0.473022 3:+26166624 None:intergenic
TCATATTCGTCCTCCTAAGA+TGG 0.476180 3:-26167869 MsG0380012875.01.T01:CDS
GGGAGGAGGAGTAGCGGCAA+AGG 0.477662 3:+26168418 None:intergenic
GGAGACCCATCGGACAAATC+CGG 0.480403 3:-26168469 MsG0380012875.01.T01:CDS
CCACTTTCTGCGTAGAGCTC+AGG 0.480574 3:+26166660 None:intergenic
CGGGGAGTGGAAAGTTGATT+CGG 0.483375 3:+26168500 None:intergenic
ATTGCATGTCAGAATCTTTG+TGG 0.483834 3:+26167939 None:intergenic
GGGGAAGGAGTGGATAGAAC+TGG 0.484376 3:-26167967 MsG0380012875.01.T01:CDS
TTGTCCGATGGGTCTCCGAT+CGG 0.484427 3:+26168475 None:intergenic
GCTTCTTCCAGCACCATACA+TGG 0.484750 3:+26166596 None:intergenic
ATAACTCTGATTCATGTGCT+TGG 0.487741 3:-26168203 MsG0380012875.01.T01:CDS
AACACCCAAAATCTCCTTTG+AGG 0.489450 3:-26168100 MsG0380012875.01.T01:intron
AGAAAGAGTTGTTGGAGCCT+CGG 0.490933 3:+26168397 None:intergenic
TCTACCCGGTGATGGAACTT+AGG 0.492874 3:+26166480 None:intergenic
GCAAAGAATAAGCCCATGTA+TGG 0.500144 3:-26166609 MsG0380012875.01.T01:CDS
TCGGCTGGGTTCTTGTTCGT+GGG 0.501860 3:+26168446 None:intergenic
AGGATTCCAGAATTTAAACT+AGG 0.507497 3:-26167988 MsG0380012875.01.T01:CDS
GTGGTGTAAGAAAGAGTTGT+TGG 0.508273 3:+26168389 None:intergenic
AATAAGCCCATGTATGGTGC+TGG 0.508737 3:-26166603 MsG0380012875.01.T01:CDS
CAAATAAGTGGGAGAGAAAG+TGG 0.509490 3:+26168709 None:intergenic
GGAGGAGGAGTAGCGGCAAA+GGG 0.513929 3:+26168419 None:intergenic
AAGCACATGAATCAGAGTTA+TGG 0.515419 3:+26168205 None:intergenic
TTGTTTCTTACATTCAAGAC+TGG 0.515730 3:+26166220 None:intergenic
AGTAGCGGCAAAGGGCAAAT+CGG 0.521266 3:+26168427 None:intergenic
ATGGAGGACATGCTAGATTC+TGG 0.527804 3:-26166573 MsG0380012875.01.T01:CDS
CTTGTCTATGCTATTTGCAT+GGG 0.527808 3:+26168545 None:intergenic
CTTGAGTTCAAGCTTTGAAG+TGG 0.530401 3:-26166520 MsG0380012875.01.T01:CDS
GACATGCTAGATTCTGGAAG+AGG 0.530423 3:-26166567 MsG0380012875.01.T01:CDS
TTTGCATGGGAGACTGTGGA+GGG 0.530637 3:+26168558 None:intergenic
CCTGAGCTCTACGCAGAAAG+TGG 0.537897 3:-26166660 MsG0380012875.01.T01:CDS
ATTTGCATGGGAGACTGTGG+AGG 0.538727 3:+26168557 None:intergenic
TGATTGGTTGTTAAACGGAA+AGG 0.539350 3:-26166304 MsG0380012875.01.T01:three_prime_UTR
CTTACAATTGAAAATGCAAA+GGG 0.548971 3:+26167826 None:intergenic
TAAACGGAAAGGAGAGAAAG+TGG 0.549311 3:-26166293 MsG0380012875.01.T01:three_prime_UTR
GGATTCCAGAATTTAAACTA+GGG 0.550237 3:-26167987 MsG0380012875.01.T01:CDS
CTATACATTCTACCCGGTGA+TGG 0.555955 3:+26166472 None:intergenic
CGGCAAAGGGCAAATCGGCT+GGG 0.556226 3:+26168432 None:intergenic
TTCTTACATTCAAGACTGGA+GGG 0.557311 3:+26166224 None:intergenic
TAAAGCCTAAGTTCCATCAC+CGG 0.557567 3:-26166485 MsG0380012875.01.T01:CDS
TTATTGATTTGCAGATTGCA+AGG 0.558955 3:-26168008 MsG0380012875.01.T01:intron
AATTTCATATCCATCTTAGG+AGG 0.559576 3:+26167859 None:intergenic
CCAGAATTTAAACTAGGGGA+AGG 0.562426 3:-26167982 MsG0380012875.01.T01:CDS
TGCCGCTACTCCTCCTCCCG+AGG 0.565177 3:-26168414 MsG0380012875.01.T01:CDS
AAACGATGATGATCACCATC+TGG 0.567321 3:-26168334 MsG0380012875.01.T01:CDS
CTCTTTCTTACACCACAAGA+AGG 0.567863 3:-26168382 MsG0380012875.01.T01:CDS
TTTCTTACATTCAAGACTGG+AGG 0.569658 3:+26166223 None:intergenic
ACTTACAATTGAAAATGCAA+AGG 0.570017 3:+26167825 None:intergenic
GTCAGTGATGAGGATGAGAA+AGG 0.571099 3:-26168285 MsG0380012875.01.T01:CDS
GTGGGCCGGATTTGTCCGAT+GGG 0.577707 3:+26168464 None:intergenic
AGTACTCTATATAAATTATG+TGG 0.579930 3:-26166359 MsG0380012875.01.T01:three_prime_UTR
TAGTATGCCAGCCAAATAAG+TGG 0.581592 3:+26168697 None:intergenic
CACAAGAAGGTCTCATATGA+CGG 0.585874 3:-26168369 MsG0380012875.01.T01:CDS
TCACCGGGTAGAATGTATAG+TGG 0.588847 3:-26166469 MsG0380012875.01.T01:CDS
CTTCTTCCAGCACCATACAT+GGG 0.599255 3:+26166597 None:intergenic
ATTTAAACTAGGGGAAGGAG+TGG 0.600866 3:-26167977 MsG0380012875.01.T01:CDS
GCTATTTGCATGGGAGACTG+TGG 0.602108 3:+26168554 None:intergenic
CGAACCGATCGGAGACCCAT+CGG 0.604171 3:-26168479 MsG0380012875.01.T01:CDS
TTTCCACTCCCCGAACCGAT+CGG 0.607705 3:-26168490 MsG0380012875.01.T01:CDS
TCAGTGATGAGGATGAGAAA+GGG 0.611348 3:-26168284 MsG0380012875.01.T01:CDS
AATTGACGCACTCACCTCAA+AGG 0.615175 3:+26168086 None:intergenic
CTTTGGACATAGTATCCACA+CGG 0.620751 3:+26168582 None:intergenic
AGCCTCGGGAGGAGGAGTAG+CGG 0.622856 3:+26168412 None:intergenic
AGAGTTGTTGGAGCCTCGGG+AGG 0.623340 3:+26168401 None:intergenic
AAAGCCTAAGTTCCATCACC+GGG 0.638761 3:-26166484 MsG0380012875.01.T01:CDS
ATGGGTCTCCGATCGGTTCG+GGG 0.639922 3:+26168482 None:intergenic
GACATAGTATCCACACGGGT+AGG 0.641710 3:+26168587 None:intergenic
CTGGTGATCGTCAACGACAG+TGG 0.642585 3:-26168315 MsG0380012875.01.T01:CDS
GATTCCAGAATTTAAACTAG+GGG 0.643576 3:-26167986 MsG0380012875.01.T01:CDS
AGTATGCCAGCCAAATAAGT+GGG 0.646192 3:+26168698 None:intergenic
GTATGGTGCTGGAAGAAGCA+TGG 0.653626 3:-26166592 MsG0380012875.01.T01:CDS
TGTCGTTGACGATCACCAGA+TGG 0.661179 3:+26168319 None:intergenic
TTGCATGGGAGACTGTGGAG+GGG 0.663470 3:+26168559 None:intergenic
CGTCAACGACAGTGGCAGTG+TGG 0.664148 3:-26168307 MsG0380012875.01.T01:CDS
TGGCAGTGTGGTCAGTGATG+AGG 0.678995 3:-26168295 MsG0380012875.01.T01:CDS
ACATACCAAACCTACCCGTG+TGG 0.693956 3:-26168597 MsG0380012875.01.T01:CDS
GAACCACTATACATTCTACC+CGG 0.700805 3:+26166466 None:intergenic
CGTCATATGAGACCTTCTTG+TGG 0.706770 3:+26168370 None:intergenic
TTTGGACATAGTATCCACAC+GGG 0.750481 3:+26168583 None:intergenic
TGGTGCTGGAAGAAGCATGG+AGG 0.797032 3:-26166589 MsG0380012875.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAATCACTAATTTTTT+TGG - Chr3:26167322-26167341 MsG0380012875.01.T01:intron 10.0%
!!! TTTTTATTTTTTTTTCCTTA+GGG + Chr3:26168162-26168181 None:intergenic 10.0%
!!! TTTTTTATTTTTTTTTCCTT+AGG + Chr3:26168163-26168182 None:intergenic 10.0%
!! ATTATTATGAAAAAAATGGA+GGG - Chr3:26166659-26166678 MsG0380012875.01.T01:CDS 15.0%
!! GAGTATTATTATGAAAAAAA+TGG - Chr3:26166655-26166674 MsG0380012875.01.T01:CDS 15.0%
!! TATTATTATGAAAAAAATGG+AGG - Chr3:26166658-26166677 MsG0380012875.01.T01:CDS 15.0%
!! TCAGATATATTATAAAAACT+TGG - Chr3:26167472-26167491 MsG0380012875.01.T01:intron 15.0%
!! TTTATGAAAAACAAAGTTTA+GGG + Chr3:26168196-26168215 None:intergenic 15.0%
!!! GAGTTTTTTTTTTTTTTTGA+AGG - Chr3:26167665-26167684 MsG0380012875.01.T01:intron 15.0%
!!! TTTTTTTTTTTTTGAAGGAA+GGG - Chr3:26167670-26167689 MsG0380012875.01.T01:intron 15.0%
!!! TTTTTTTTTTTTTTGAAGGA+AGG - Chr3:26167669-26167688 MsG0380012875.01.T01:intron 15.0%
!! AAATTAAAAAGTGATTGAAC+TGG - Chr3:26167866-26167885 MsG0380012875.01.T01:CDS 20.0%
!! AAGATTACTTGTATCAATAT+TGG + Chr3:26168370-26168389 None:intergenic 20.0%
!! AGTACTCTATATAAATTATG+TGG - Chr3:26168548-26168567 MsG0380012875.01.T01:CDS 20.0%
!! GTTTATGAAAAACAAAGTTT+AGG + Chr3:26168197-26168216 None:intergenic 20.0%
!! TAAATGTTTGCATATATGTA+GGG - Chr3:26168223-26168242 MsG0380012875.01.T01:CDS 20.0%
!! TAATCTTATAGTGATATATG+AGG + Chr3:26167221-26167240 None:intergenic 20.0%
!!! AGTTCAATCACTTTTTAATT+TGG + Chr3:26167867-26167886 None:intergenic 20.0%
!!! GAGAATAAATCAAGATTTTT+TGG - Chr3:26167012-26167031 MsG0380012875.01.T01:intron 20.0%
!!! TTTTTTGATTGGTTGTTAAA+CGG - Chr3:26168598-26168617 MsG0380012875.01.T01:CDS 20.0%
! ACAAGTACTATTAAATGCTT+GGG + Chr3:26168497-26168516 None:intergenic 25.0%
! ACAATAATGTCTTACCATAA+TGG - Chr3:26166244-26166263 MsG0380012875.01.T01:three_prime_UTR 25.0%
! ACTTACAATTGAAAATGCAA+AGG + Chr3:26167085-26167104 None:intergenic 25.0%
! ATTCTCTACGATTAAATTCA+TGG + Chr3:26166998-26167017 None:intergenic 25.0%
! CATATACAGAAGGTAAAATT+AGG + Chr3:26167533-26167552 None:intergenic 25.0%
! CTTACAATTGAAAATGCAAA+GGG + Chr3:26167084-26167103 None:intergenic 25.0%
! GAAAATTTCATATCCATCTT+AGG + Chr3:26167054-26167073 None:intergenic 25.0%
! GTAAATGTTTGCATATATGT+AGG - Chr3:26168222-26168241 MsG0380012875.01.T01:CDS 25.0%
! TACAAGTACTATTAAATGCT+TGG + Chr3:26168498-26168517 None:intergenic 25.0%
! TATCTGAAAAATTGTCAAAG+AGG + Chr3:26167459-26167478 None:intergenic 25.0%
!! AACTTCAAGCTTTTATCAAT+TGG + Chr3:26168580-26168599 None:intergenic 25.0%
!! AGGGAATGAACAATTTTAAA+AGG + Chr3:26167947-26167928 None:intergenic 25.0%
!! CTAATTTTACCTTCTGTATA+TGG - Chr3:26167531-26167550 MsG0380012875.01.T01:intron 25.0%
!! GTCACTAATTTTTACTCATA+AGG - Chr3:26166871-26166890 MsG0380012875.01.T01:intron 25.0%
!!! AAAGCTTGAAGTTTTTTGAT+TGG - Chr3:26168587-26168606 MsG0380012875.01.T01:CDS 25.0%
!!! GGAATGAACAATTTTAAAAG+AGG - Chr3:26167930-26167949 MsG0380012875.01.T01:CDS 25.0%
!!! GGGAATGAACAATTTTAAAA+GGG + Chr3:26167948-26167929 None:intergenic 25.0%
AAAAATTGTCAAAGAGGCTT+AGG + Chr3:26167453-26167472 None:intergenic 30.0%
AATTTCATATCCATCTTAGG+AGG + Chr3:26167051-26167070 None:intergenic 30.0%
AGGATTCCAGAATTTAAACT+AGG - Chr3:26166919-26166938 MsG0380012875.01.T01:intron 30.0%
AGGGTTATATTTAGAGATAG+AGG - Chr3:26167689-26167708 MsG0380012875.01.T01:intron 30.0%
AGTTAACTCACACACAATTT+AGG + Chr3:26167785-26167804 None:intergenic 30.0%
AGTTAACTCACCTTGAATTA+AGG - Chr3:26167908-26167927 MsG0380012875.01.T01:CDS 30.0%
ATTATGAAAAAAATGGAGGG+TGG - Chr3:26166662-26166681 MsG0380012875.01.T01:CDS 30.0%
CTAATACATCCATATACAGA+AGG + Chr3:26167543-26167562 None:intergenic 30.0%
GATTCCAGAATTTAAACTAG+GGG - Chr3:26166921-26166940 MsG0380012875.01.T01:intron 30.0%
GGATTCCAGAATTTAAACTA+GGG - Chr3:26166920-26166939 MsG0380012875.01.T01:intron 30.0%
GTTAACTCACACACAATTTA+GGG + Chr3:26167784-26167803 None:intergenic 30.0%
GTTAACTCACCTTGAATTAA+GGG - Chr3:26167909-26167928 MsG0380012875.01.T01:CDS 30.0%
GTTATATTTAGAGATAGAGG+TGG - Chr3:26167692-26167711 MsG0380012875.01.T01:intron 30.0%
TAGCATATGTCCTTGTTAAA+TGG - Chr3:26167142-26167161 MsG0380012875.01.T01:intron 30.0%
TAGTCTATGTCCATTTAACA+AGG + Chr3:26167155-26167174 None:intergenic 30.0%
TGTTATGATGCATACCATTA+TGG + Chr3:26166261-26166280 None:intergenic 30.0%
TTGCCATTAGAAATCACAAA+AGG - Chr3:26167251-26167270 MsG0380012875.01.T01:intron 30.0%
TTGTTCATTCCCTTAATTCA+AGG + Chr3:26167921-26167940 None:intergenic 30.0%
! TTGCCTTTTGTGATTTCTAA+TGG + Chr3:26167257-26167276 None:intergenic 30.0%
! TTGTTTCTTACATTCAAGAC+TGG + Chr3:26168690-26168709 None:intergenic 30.0%
!! TTATTGATTTGCAGATTGCA+AGG - Chr3:26166899-26166918 MsG0380012875.01.T01:intron 30.0%
!!! TGAGGATCACTTTTTGTTTT+TGG + Chr3:26167203-26167222 None:intergenic 30.0%
AAGCACATGAATCAGAGTTA+TGG + Chr3:26166705-26166724 None:intergenic 35.0%
ATAACTCTGATTCATGTGCT+TGG - Chr3:26166704-26166723 MsG0380012875.01.T01:intron 35.0%
ATTGCATGTCAGAATCTTTG+TGG + Chr3:26166971-26166990 None:intergenic 35.0%
CATCTTTCCATTGCAATTAG+AGG - Chr3:26168276-26168295 MsG0380012875.01.T01:CDS 35.0%
CTCTAATTGCAATGGAAAGA+TGG + Chr3:26168278-26168297 None:intergenic 35.0%
TCATGCTATCGCTATATCAA+TGG + Chr3:26166850-26166869 None:intergenic 35.0%
TGAAAATGCAAAGGGTAAGA+TGG + Chr3:26167076-26167095 None:intergenic 35.0%
TTCTTACATTCAAGACTGGA+GGG + Chr3:26168686-26168705 None:intergenic 35.0%
TTCTTTGCCTCTAATTGCAA+TGG + Chr3:26168286-26168305 None:intergenic 35.0%
TTTCTTACATTCAAGACTGG+AGG + Chr3:26168687-26168706 None:intergenic 35.0%
! CTTGTCTATGCTATTTGCAT+GGG + Chr3:26166365-26166384 None:intergenic 35.0%
! TGATTGGTTGTTAAACGGAA+AGG - Chr3:26168603-26168622 MsG0380012875.01.T01:CDS 35.0%
!!! CACGCTAACAGTTTTAAGAT+AGG - Chr3:26167836-26167855 MsG0380012875.01.T01:CDS 35.0%
!!! TTGTTTTTGGACACAATGTG+AGG + Chr3:26167190-26167209 None:intergenic 35.0%
AAAAAAATGGAGGGTGGAAG+AGG - Chr3:26166668-26166687 MsG0380012875.01.T01:intron 40.0%
AAACGATGATGATCACCATC+TGG - Chr3:26166573-26166592 MsG0380012875.01.T01:CDS 40.0%
AACACCCAAAATCTCCTTTG+AGG - Chr3:26166807-26166826 MsG0380012875.01.T01:intron 40.0%
AACTTAGGCTTTACAAGTGC+TGG + Chr3:26168415-26168434 None:intergenic 40.0%
AATTGATAAGACCCTCTCGT+AGG + Chr3:26167733-26167752 None:intergenic 40.0%
AGGAGAGAAAGTGGTAAGAA+AGG - Chr3:26168623-26168642 MsG0380012875.01.T01:CDS 40.0%
AGTATGCCAGCCAAATAAGT+GGG + Chr3:26166212-26166231 None:intergenic 40.0%
ATTTAAACTAGGGGAAGGAG+TGG - Chr3:26166930-26166949 MsG0380012875.01.T01:intron 40.0%
CAAATAAGTGGGAGAGAAAG+TGG + Chr3:26166201-26166220 None:intergenic 40.0%
CACAAGAAGGTCTCATATGA+CGG - Chr3:26166538-26166557 MsG0380012875.01.T01:CDS 40.0%
CACTTTCTCTCCCACTTATT+TGG - Chr3:26166199-26166218 MsG0380012875.01.T01:three_prime_UTR 40.0%
CATATGTAGCATCATCCCTA+AGG - Chr3:26168144-26168163 MsG0380012875.01.T01:CDS 40.0%
CCAGAATTTAAACTAGGGGA+AGG - Chr3:26166925-26166944 MsG0380012875.01.T01:intron 40.0%
CCTTCCCCTAGTTTAAATTC+TGG + Chr3:26166928-26166947 None:intergenic 40.0%
CTCTTTCTTACACCACAAGA+AGG - Chr3:26166525-26166544 MsG0380012875.01.T01:CDS 40.0%
CTGATTCATGTGCTTGGATT+TGG - Chr3:26166710-26166729 MsG0380012875.01.T01:intron 40.0%
CTGCATTCCCAAAATACAGA+GGG - Chr3:26168076-26168095 MsG0380012875.01.T01:intron 40.0%
CTTTGGACATAGTATCCACA+CGG + Chr3:26166328-26166347 None:intergenic 40.0%
GAACCACTATACATTCTACC+CGG + Chr3:26168444-26168463 None:intergenic 40.0%
GCAAAGAATAAGCCCATGTA+TGG - Chr3:26168298-26168317 MsG0380012875.01.T01:CDS 40.0%
GCAAGTTACTTGGAGAGTTA+TGG - Chr3:26166735-26166754 MsG0380012875.01.T01:intron 40.0%
GTGGTGTAAGAAAGAGTTGT+TGG + Chr3:26166521-26166540 None:intergenic 40.0%
GTGTAGATAGCAAGACATTG+AGG + Chr3:26168031-26168050 None:intergenic 40.0%
TAAACGGAAAGGAGAGAAAG+TGG - Chr3:26168614-26168633 MsG0380012875.01.T01:CDS 40.0%
TAAAGCCTAAGTTCCATCAC+CGG - Chr3:26168422-26168441 MsG0380012875.01.T01:CDS 40.0%
TAGTATGCCAGCCAAATAAG+TGG + Chr3:26166213-26166232 None:intergenic 40.0%
TCAGTGATGAGGATGAGAAA+GGG - Chr3:26166623-26166642 MsG0380012875.01.T01:CDS 40.0%
TCATATTCGTCCTCCTAAGA+TGG - Chr3:26167038-26167057 MsG0380012875.01.T01:intron 40.0%
TTTGGACATAGTATCCACAC+GGG + Chr3:26166327-26166346 None:intergenic 40.0%
! ACTCACCTCAAAGGAGATTT+TGG + Chr3:26166815-26166834 None:intergenic 40.0%
! CTCACCTCAAAGGAGATTTT+GGG + Chr3:26166814-26166833 None:intergenic 40.0%
! GCTTGTCTATGCTATTTGCA+TGG + Chr3:26166366-26166385 None:intergenic 40.0%
! GTGATCATCATCGTTTTCAG+TGG + Chr3:26166569-26166588 None:intergenic 40.0%
! TGGAGAGTTATGGTGAGTTT+TGG - Chr3:26166745-26166764 MsG0380012875.01.T01:intron 40.0%
!! ATTTTAGTCCTCCTACGAGA+GGG - Chr3:26167719-26167738 MsG0380012875.01.T01:intron 40.0%
!! CTCTGTATTTTGGGAATGCA+GGG + Chr3:26168077-26168096 None:intergenic 40.0%
!! CTTGAGTTCAAGCTTTGAAG+TGG - Chr3:26168387-26168406 MsG0380012875.01.T01:CDS 40.0%
!! TCAAAGGAGATTTTGGGTGT+TGG + Chr3:26166808-26166827 None:intergenic 40.0%
!!! TATTTTAGTCCTCCTACGAG+AGG - Chr3:26167718-26167737 MsG0380012875.01.T01:intron 40.0%
AAAGCCTAAGTTCCATCACC+GGG - Chr3:26168423-26168442 MsG0380012875.01.T01:CDS 45.0%
AATAAGCCCATGTATGGTGC+TGG - Chr3:26168304-26168323 MsG0380012875.01.T01:CDS 45.0%
AATTGACGCACTCACCTCAA+AGG + Chr3:26166824-26166843 None:intergenic 45.0%
AGAAAGAGTTGTTGGAGCCT+CGG + Chr3:26166513-26166532 None:intergenic 45.0%
AGGGTGTGCTGGAATTTATG+GGG - Chr3:26168095-26168114 MsG0380012875.01.T01:intron 45.0%
ATGGAGGACATGCTAGATTC+TGG - Chr3:26168334-26168353 MsG0380012875.01.T01:CDS 45.0%
CCTGCATTCCCAAAATACAG+AGG - Chr3:26168075-26168094 MsG0380012875.01.T01:intron 45.0%
CGTCATATGAGACCTTCTTG+TGG + Chr3:26166540-26166559 None:intergenic 45.0%
CTATACATTCTACCCGGTGA+TGG + Chr3:26168438-26168457 None:intergenic 45.0%
CTTCTTCCAGCACCATACAT+GGG + Chr3:26168313-26168332 None:intergenic 45.0%
GGATTTGGCTGCAAGTTACT+TGG - Chr3:26166725-26166744 MsG0380012875.01.T01:intron 45.0%
GTCAGTGATGAGGATGAGAA+AGG - Chr3:26166622-26166641 MsG0380012875.01.T01:CDS 45.0%
TCACCGGGTAGAATGTATAG+TGG - Chr3:26168438-26168457 MsG0380012875.01.T01:CDS 45.0%
TTCTCTCCCACTTATTTGGC+TGG - Chr3:26166203-26166222 MsG0380012875.01.T01:three_prime_UTR 45.0%
! AGAGGGTGTGCTGGAATTTA+TGG - Chr3:26168093-26168112 MsG0380012875.01.T01:intron 45.0%
! CAGCACACCCTCTGTATTTT+GGG + Chr3:26168086-26168105 None:intergenic 45.0%
! GACATGCTAGATTCTGGAAG+AGG - Chr3:26168340-26168359 MsG0380012875.01.T01:CDS 45.0%
! GAGGGTGTGCTGGAATTTAT+GGG - Chr3:26168094-26168113 MsG0380012875.01.T01:intron 45.0%
!! CCTCTGTATTTTGGGAATGC+AGG + Chr3:26168078-26168097 None:intergenic 45.0%
!! TGTATTTTGGGAATGCAGGG+AGG + Chr3:26168074-26168093 None:intergenic 45.0%
!!! AAGGAGATTTTGGGTGTTGG+AGG + Chr3:26166805-26166824 None:intergenic 45.0%
!!! AAGTTGATTCGGCGTCGTTT+TGG + Chr3:26166399-26166418 None:intergenic 45.0%
!! AATATAGTAAAATAAAATAT+AGG - Chr3:26167991-26168010 MsG0380012875.01.T01:CDS 5.0%
!! ATATAGTAAAATAAAATATA+GGG - Chr3:26167992-26168011 MsG0380012875.01.T01:CDS 5.0%
ACATACCAAACCTACCCGTG+TGG - Chr3:26166310-26166329 MsG0380012875.01.T01:three_prime_UTR 50.0%
AGTAGCGGCAAAGGGCAAAT+CGG + Chr3:26166483-26166502 None:intergenic 50.0%
AGTATCCACACGGGTAGGTT+TGG + Chr3:26166318-26166337 None:intergenic 50.0%
ATTTGCATGGGAGACTGTGG+AGG + Chr3:26166353-26166372 None:intergenic 50.0%
GAAAGAGTTGTTGGAGCCTC+GGG + Chr3:26166512-26166531 None:intergenic 50.0%
GACATAGTATCCACACGGGT+AGG + Chr3:26166323-26166342 None:intergenic 50.0%
GCTATTTGCATGGGAGACTG+TGG + Chr3:26166356-26166375 None:intergenic 50.0%
GCTTCTTCCAGCACCATACA+TGG + Chr3:26168314-26168333 None:intergenic 50.0%
TGATAAGACCCTCTCGTAGG+AGG + Chr3:26167730-26167749 None:intergenic 50.0%
TGTCGTTGACGATCACCAGA+TGG + Chr3:26166591-26166610 None:intergenic 50.0%
TTTGCATGGGAGACTGTGGA+GGG + Chr3:26166352-26166371 None:intergenic 50.0%
! CCAAAATACAGAGGGTGTGC+TGG - Chr3:26168084-26168103 MsG0380012875.01.T01:intron 50.0%
! CCAGCACACCCTCTGTATTT+TGG + Chr3:26168087-26168106 None:intergenic 50.0%
! CGGGGAGTGGAAAGTTGATT+CGG + Chr3:26166410-26166429 None:intergenic 50.0%
! GTATGGTGCTGGAAGAAGCA+TGG - Chr3:26168315-26168334 MsG0380012875.01.T01:CDS 50.0%
!! TCTACCCGGTGATGGAACTT+AGG + Chr3:26168430-26168449 None:intergenic 50.0%
ATCGGCTGGGTTCTTGTTCG+TGG + Chr3:26166465-26166484 None:intergenic 55.0%
CCACTTTCTGCGTAGAGCTC+AGG + Chr3:26168250-26168269 None:intergenic 55.0%
CCTGAGCTCTACGCAGAAAG+TGG - Chr3:26168247-26168266 MsG0380012875.01.T01:CDS 55.0%
CTGGTGATCGTCAACGACAG+TGG - Chr3:26166592-26166611 MsG0380012875.01.T01:CDS 55.0%
GGAGACCCATCGGACAAATC+CGG - Chr3:26166438-26166457 MsG0380012875.01.T01:CDS 55.0%
GGGGAAGGAGTGGATAGAAC+TGG - Chr3:26166940-26166959 MsG0380012875.01.T01:intron 55.0%
TCGGCTGGGTTCTTGTTCGT+GGG + Chr3:26166464-26166483 None:intergenic 55.0%
TGGCAGTGTGGTCAGTGATG+AGG - Chr3:26166612-26166631 MsG0380012875.01.T01:CDS 55.0%
TTGCATGGGAGACTGTGGAG+GGG + Chr3:26166351-26166370 None:intergenic 55.0%
TTGGGAATGCAGGGAGGAGT+GGG + Chr3:26168068-26168087 None:intergenic 55.0%
TTGTCCGATGGGTCTCCGAT+CGG + Chr3:26166435-26166454 None:intergenic 55.0%
TTTCCACTCCCCGAACCGAT+CGG - Chr3:26166417-26166436 MsG0380012875.01.T01:CDS 55.0%
TTTGGGAATGCAGGGAGGAG+TGG + Chr3:26168069-26168088 None:intergenic 55.0%
! TGGTGCTGGAAGAAGCATGG+AGG - Chr3:26168318-26168337 MsG0380012875.01.T01:CDS 55.0%
!! GGAGGAGTGGGTTGCAATTG+TGG + Chr3:26168056-26168075 None:intergenic 55.0%
AGAGTTGTTGGAGCCTCGGG+AGG + Chr3:26166509-26166528 None:intergenic 60.0%
CGAACCGATCGGAGACCCAT+CGG - Chr3:26166428-26166447 MsG0380012875.01.T01:CDS 60.0%
CGATGGGTCTCCGATCGGTT+CGG + Chr3:26166430-26166449 None:intergenic 60.0%
CGGCAAAGGGCAAATCGGCT+GGG + Chr3:26166478-26166497 None:intergenic 60.0%
CGTCAACGACAGTGGCAGTG+TGG - Chr3:26166600-26166619 MsG0380012875.01.T01:CDS 60.0%
CTGGGTTCTTGTTCGTGGGC+CGG + Chr3:26166460-26166479 None:intergenic 60.0%
GGAGGAGGAGTAGCGGCAAA+GGG + Chr3:26166491-26166510 None:intergenic 60.0%
GTGGGCCGGATTTGTCCGAT+GGG + Chr3:26166446-26166465 None:intergenic 60.0%
! GATGGGTCTCCGATCGGTTC+GGG + Chr3:26166429-26166448 None:intergenic 60.0%
!! ATGGGTCTCCGATCGGTTCG+GGG + Chr3:26166428-26166447 None:intergenic 60.0%
AGCCTCGGGAGGAGGAGTAG+CGG + Chr3:26166498-26166517 None:intergenic 65.0%
CGTGGGCCGGATTTGTCCGA+TGG + Chr3:26166447-26166466 None:intergenic 65.0%
GCGGCAAAGGGCAAATCGGC+TGG + Chr3:26166479-26166498 None:intergenic 65.0%
GGGAGACTGTGGAGGGGCTT+TGG + Chr3:26166345-26166364 None:intergenic 65.0%
GGGAGGAGGAGTAGCGGCAA+AGG + Chr3:26166492-26166511 None:intergenic 65.0%
GTTGTTGGAGCCTCGGGAGG+AGG + Chr3:26166506-26166525 None:intergenic 65.0%
!! TCTCCGATCGGTTCGGGGAG+TGG + Chr3:26166423-26166442 None:intergenic 65.0%
TGCCGCTACTCCTCCTCCCG+AGG - Chr3:26166493-26166512 MsG0380012875.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 26166171 26168758 26166171 ID=MsG0380012875.01;Name=MsG0380012875.01
Chr3 mRNA 26166171 26168758 26166171 ID=MsG0380012875.01.T01;Parent=MsG0380012875.01;Name=MsG0380012875.01.T01;_AED=0.26;_eAED=0.26;_QI=79|1|1|1|1|1|3|227|350
Chr3 exon 26166171 26166685 26166171 ID=MsG0380012875.01.T01:exon:14208;Parent=MsG0380012875.01.T01
Chr3 exon 26167831 26168016 26167831 ID=MsG0380012875.01.T01:exon:14207;Parent=MsG0380012875.01.T01
Chr3 exon 26168101 26168758 26168101 ID=MsG0380012875.01.T01:exon:14206;Parent=MsG0380012875.01.T01
Chr3 five_prime_UTR 26168680 26168758 26168680 ID=MsG0380012875.01.T01:five_prime_utr;Parent=MsG0380012875.01.T01
Chr3 CDS 26168101 26168679 26168101 ID=MsG0380012875.01.T01:cds;Parent=MsG0380012875.01.T01
Chr3 CDS 26167831 26168016 26167831 ID=MsG0380012875.01.T01:cds;Parent=MsG0380012875.01.T01
Chr3 CDS 26166398 26166685 26166398 ID=MsG0380012875.01.T01:cds;Parent=MsG0380012875.01.T01
Chr3 three_prime_UTR 26166171 26166397 26166171 ID=MsG0380012875.01.T01:three_prime_utr;Parent=MsG0380012875.01.T01
Gene Sequence

>MsG0380012875.01.T01

ATGTCTTACCATAATGGTATGCATCATAACAACAACGTTGTTGAAGATCATGAAACTCTGACATACCAAACCTACCCGTGTGGATACTATGTCCAAAGCCCCTCCACAGTCTCCCATGCAAATAGCATAGACAAGCATAGCAACGTCCAAAACGACGCCGAATCAACTTTCCACTCCCCGAACCGATCGGAGACCCATCGGACAAATCCGGCCCACGAACAAGAACCCAGCCGATTTGCCCTTTGCCGCTACTCCTCCTCCCGAGGCTCCAACAACTCTTTCTTACACCACAAGAAGGTCTCATATGACGGCACTGCCACTGAAAACGATGATGATCACCATCTGGTGATCGTCAACGACAGTGGCAGTGTGGTCAGTGATGAGGATGAGAAAGGGTTGTTTGATGAGTATTATTATGAAAAAAATGGAGGGTGGAAGAGGTACTTCTCTTACCATAACTCTGATTCATGTGCTTGGATTTGGCTGCAAGTTACTTGGAGAGTTATGGTGAGTTTTGGATTTGCATTGCTTGTTTTCTACATTGCTACAAAACCTCCAACACCCAAAATCTCCTTTGAGATTGCAAGGATTCCAGAATTTAAACTAGGGGAAGGAGTGGATAGAACTGGAGTGACCACAAAGATTCTGACATGCAATTGCTCCATGAATTTAATCGTAGAGAATAAATCAAGATTTTTTGGTCTTCATATTCGTCCTCCTAAGATGGATATGAAATTTTCCATCTTACCCTTTGCATTTTCAATTGGACCTGAGCTCTACGCAGAAAGTGGATTAACCATCTTTCCATTGCAATTAGAGGCAAAGAATAAGCCCATGTATGGTGCTGGAAGAAGCATGGAGGACATGCTAGATTCTGGAAGAGGATTGCCAATATTGATACAAGTAATCTTGAGTTCAAGCTTTGAAGTGGTGCCAGCACTTGTAAAGCCTAAGTTCCATCACCGGGTAGAATGTATAGTGGTTCTTAAGAAGACTTACAATAAGAAACATCATTCCCAAGCATTTAATAGTACTTGTAAAGTAACTTCTTGA
Protein sequence

>MsG0380012875.01.T01

MSYHNGMHHNNNVVEDHETLTYQTYPCGYYVQSPSTVSHANSIDKHSNVQNDAESTFHSPNRSETHRTNPAHEQEPSRFALCRYSSSRGSNNSFLHHKKVSYDGTATENDDDHHLVIVNDSGSVVSDEDEKGLFDEYYYEKNGGWKRYFSYHNSDSCAWIWLQVTWRVMVSFGFALLVFYIATKPPTPKISFEIARIPEFKLGEGVDRTGVTTKILTCNCSMNLIVENKSRFFGLHIRPPKMDMKFSILPFAFSIGPELYAESGLTIFPLQLEAKNKPMYGAGRSMEDMLDSGRGLPILIQVILSSSFEVVPALVKPKFHHRVECIVVLKKTYNKKHHSQAFNSTCKVTS*