Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029257.01.T01 | XP_022133647.1 | 73.984 | 246 | 58 | 1 | 3 | 248 | 82 | 321 | 1.46E-130 | 385 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029257.01.T01 | Q9FLB5 | 81.061 | 132 | 25 | 0 | 11 | 142 | 84 | 215 | 4.61E-74 | 238 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029257.01.T01 | A0A6J1BXA5 | 73.984 | 246 | 58 | 1 | 3 | 248 | 82 | 321 | 6.95e-131 | 385 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180004804.01 | MsG0580029257.01 | 0.811019 | 8.630231e-51 | 5.283881e-48 |
MsG0180005757.01 | MsG0580029257.01 | 0.801896 | 7.253329e-49 | 3.504447e-46 |
MsG0380012875.01 | MsG0580029257.01 | 0.802095 | 6.599030e-49 | 3.204448e-46 |
MsG0380014734.01 | MsG0580029257.01 | 0.823762 | 1.163321e-53 | 1.010993e-50 |
MsG0480020932.01 | MsG0580029257.01 | 0.837030 | 6.609834e-57 | 8.479671e-54 |
MsG0380017989.01 | MsG0580029257.01 | 0.801798 | 7.595592e-49 | 3.660582e-46 |
MsG0480018185.01 | MsG0580029257.01 | 0.815018 | 1.145891e-51 | 7.810176e-49 |
MsG0580027036.01 | MsG0580029257.01 | 0.812442 | 4.230958e-51 | 2.690620e-48 |
MsG0580029257.01 | MsG0880044984.01 | 0.814123 | 1.808232e-51 | 1.202986e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029257.01.T01 | MTR_5g083360 | 90.580 | 138 | 13 | 0 | 11 | 148 | 81 | 218 | 7.95e-88 | 271 |
MsG0580029257.01.T01 | MTR_5g083360 | 73.103 | 145 | 16 | 1 | 127 | 248 | 355 | 499 | 5.00e-63 | 207 |
MsG0580029257.01.T01 | MTR_3g071890 | 81.159 | 138 | 26 | 0 | 11 | 148 | 90 | 227 | 1.49e-77 | 245 |
MsG0580029257.01.T01 | MTR_3g071890 | 61.644 | 146 | 32 | 1 | 127 | 248 | 357 | 502 | 2.46e-52 | 179 |
MsG0580029257.01.T01 | MTR_5g073210 | 68.800 | 125 | 39 | 0 | 11 | 135 | 82 | 206 | 5.57e-59 | 196 |
MsG0580029257.01.T01 | MTR_5g073210 | 61.458 | 96 | 37 | 0 | 153 | 248 | 397 | 492 | 2.21e-36 | 135 |
MsG0580029257.01.T01 | MTR_4g064530 | 66.393 | 122 | 41 | 0 | 11 | 132 | 101 | 222 | 5.82e-57 | 191 |
MsG0580029257.01.T01 | MTR_4g064530 | 43.810 | 105 | 58 | 1 | 154 | 258 | 424 | 527 | 9.93e-23 | 97.4 |
MsG0580029257.01.T01 | MTR_4g064530 | 66.393 | 122 | 41 | 0 | 11 | 132 | 101 | 222 | 2.20e-56 | 190 |
MsG0580029257.01.T01 | MTR_4g064530 | 40.650 | 123 | 70 | 2 | 136 | 258 | 408 | 527 | 1.43e-22 | 97.1 |
MsG0580029257.01.T01 | MTR_7g060460 | 55.479 | 146 | 58 | 1 | 11 | 156 | 90 | 228 | 4.17e-54 | 184 |
MsG0580029257.01.T01 | MTR_7g060460 | 46.939 | 98 | 51 | 1 | 159 | 256 | 425 | 521 | 1.31e-22 | 97.1 |
MsG0580029257.01.T01 | MTR_7g062250 | 62.903 | 124 | 46 | 0 | 11 | 134 | 91 | 214 | 1.09e-53 | 182 |
MsG0580029257.01.T01 | MTR_7g062250 | 50.000 | 100 | 49 | 1 | 155 | 254 | 418 | 516 | 3.45e-23 | 98.6 |
MsG0580029257.01.T01 | MTR_7g058690 | 62.097 | 124 | 47 | 0 | 11 | 134 | 90 | 213 | 4.60e-53 | 181 |
MsG0580029257.01.T01 | MTR_7g058690 | 50.000 | 96 | 47 | 1 | 159 | 254 | 424 | 518 | 2.98e-24 | 101 |
MsG0580029257.01.T01 | MTR_4g015120 | 58.462 | 130 | 54 | 0 | 11 | 140 | 81 | 210 | 3.74e-52 | 178 |
MsG0580029257.01.T01 | MTR_4g015120 | 48.039 | 102 | 52 | 1 | 153 | 254 | 395 | 495 | 1.22e-26 | 108 |
MsG0580029257.01.T01 | MTR_7g458880 | 60.484 | 124 | 49 | 0 | 11 | 134 | 90 | 213 | 4.21e-52 | 178 |
MsG0580029257.01.T01 | MTR_7g458880 | 46.875 | 96 | 50 | 1 | 159 | 254 | 424 | 518 | 3.06e-21 | 92.8 |
MsG0580029257.01.T01 | MTR_7g062310 | 60.484 | 124 | 49 | 0 | 11 | 134 | 104 | 227 | 1.20e-51 | 177 |
MsG0580029257.01.T01 | MTR_7g062310 | 53.061 | 98 | 45 | 1 | 159 | 256 | 437 | 533 | 1.75e-28 | 114 |
MsG0580029257.01.T01 | MTR_3g462760 | 59.200 | 125 | 51 | 0 | 11 | 135 | 83 | 207 | 1.31e-51 | 176 |
MsG0580029257.01.T01 | MTR_3g462760 | 50.000 | 104 | 51 | 1 | 153 | 256 | 394 | 496 | 2.59e-28 | 113 |
MsG0580029257.01.T01 | MTR_5g020600 | 59.677 | 124 | 50 | 0 | 11 | 134 | 91 | 214 | 5.75e-50 | 172 |
MsG0580029257.01.T01 | MTR_5g020600 | 48.077 | 104 | 54 | 0 | 153 | 256 | 403 | 506 | 6.15e-27 | 109 |
MsG0580029257.01.T01 | MTR_5g069680 | 56.452 | 124 | 54 | 0 | 11 | 134 | 84 | 207 | 1.22e-49 | 171 |
MsG0580029257.01.T01 | MTR_5g069680 | 50.000 | 102 | 51 | 0 | 153 | 254 | 395 | 496 | 2.50e-30 | 119 |
MsG0580029257.01.T01 | MTR_5g020620 | 58.065 | 124 | 52 | 0 | 11 | 134 | 87 | 210 | 1.29e-49 | 171 |
MsG0580029257.01.T01 | MTR_5g020620 | 43.697 | 119 | 65 | 1 | 136 | 254 | 383 | 499 | 3.47e-27 | 110 |
MsG0580029257.01.T01 | MTR_4g019225 | 65.574 | 122 | 42 | 0 | 11 | 132 | 83 | 204 | 1.44e-49 | 171 |
MsG0580029257.01.T01 | MTR_4g019225 | 46.939 | 98 | 46 | 1 | 158 | 249 | 408 | 505 | 1.08e-23 | 100 |
MsG0580029257.01.T01 | MTR_7g065970 | 63.115 | 122 | 44 | 1 | 11 | 132 | 82 | 202 | 1.55e-49 | 171 |
MsG0580029257.01.T01 | MTR_7g065970 | 45.833 | 96 | 47 | 2 | 158 | 249 | 409 | 503 | 2.74e-21 | 93.2 |
MsG0580029257.01.T01 | MTR_5g081810 | 58.400 | 125 | 52 | 0 | 11 | 135 | 56 | 180 | 1.14e-48 | 168 |
MsG0580029257.01.T01 | MTR_5g081810 | 50.980 | 102 | 50 | 0 | 153 | 254 | 366 | 467 | 4.28e-30 | 118 |
MsG0580029257.01.T01 | MTR_2g008330 | 55.645 | 124 | 55 | 0 | 11 | 134 | 95 | 218 | 5.50e-46 | 162 |
MsG0580029257.01.T01 | MTR_2g008330 | 41.748 | 103 | 59 | 1 | 152 | 253 | 414 | 516 | 4.73e-21 | 92.4 |
MsG0580029257.01.T01 | MTR_3g101640 | 55.738 | 122 | 54 | 0 | 11 | 132 | 87 | 208 | 5.74e-44 | 156 |
MsG0580029257.01.T01 | MTR_3g101640 | 40.816 | 98 | 56 | 2 | 153 | 248 | 406 | 503 | 1.40e-17 | 82.4 |
MsG0580029257.01.T01 | MTR_3g101635 | 55.738 | 122 | 54 | 0 | 11 | 132 | 84 | 205 | 6.05e-43 | 153 |
MsG0580029257.01.T01 | MTR_3g101635 | 45.361 | 97 | 52 | 1 | 153 | 248 | 402 | 498 | 2.64e-22 | 95.9 |
MsG0580029257.01.T01 | MTR_7g065980 | 54.098 | 122 | 54 | 2 | 11 | 132 | 82 | 201 | 1.36e-42 | 152 |
MsG0580029257.01.T01 | MTR_7g065980 | 38.462 | 104 | 53 | 3 | 153 | 249 | 405 | 504 | 2.39e-17 | 81.6 |
MsG0580029257.01.T01 | MTR_8g027375 | 37.200 | 250 | 124 | 6 | 11 | 240 | 91 | 327 | 1.53e-37 | 139 |
MsG0580029257.01.T01 | MTR_8g027375 | 35.294 | 119 | 70 | 3 | 133 | 248 | 389 | 503 | 1.24e-17 | 82.4 |
MsG0580029257.01.T01 | MTR_7g058670 | 59.756 | 82 | 32 | 1 | 10 | 90 | 12 | 93 | 4.55e-32 | 114 |
MsG0580029257.01.T01 | MTR_5g081790 | 59.036 | 83 | 34 | 0 | 11 | 93 | 88 | 170 | 2.86e-31 | 120 |
MsG0580029257.01.T01 | MTR_5g081790 | 50.980 | 102 | 50 | 0 | 153 | 254 | 299 | 400 | 1.66e-30 | 118 |
MsG0580029257.01.T01 | MTR_8g073840 | 49.524 | 105 | 42 | 3 | 29 | 132 | 77 | 171 | 4.41e-28 | 109 |
MsG0580029257.01.T01 | MTR_8g091390 | 32.624 | 141 | 78 | 7 | 3 | 139 | 81 | 208 | 3.39e-13 | 69.3 |
MsG0580029257.01.T01 | MTR_3g078740 | 30.769 | 156 | 86 | 7 | 11 | 149 | 84 | 234 | 2.36e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029257.01.T01 | AT5G05390 | 81.061 | 132 | 25 | 0 | 11 | 142 | 84 | 215 | 4.70e-75 | 238 |
MsG0580029257.01.T01 | AT5G05390 | 68.376 | 117 | 35 | 2 | 133 | 248 | 382 | 497 | 6.86e-47 | 164 |
MsG0580029257.01.T01 | AT2G40370 | 75.940 | 133 | 32 | 0 | 11 | 143 | 86 | 218 | 1.17e-71 | 230 |
MsG0580029257.01.T01 | AT2G40370 | 57.241 | 145 | 38 | 2 | 127 | 247 | 367 | 511 | 8.11e-47 | 164 |
MsG0580029257.01.T01 | AT2G30210 | 73.077 | 130 | 35 | 0 | 11 | 140 | 85 | 214 | 6.53e-67 | 217 |
MsG0580029257.01.T01 | AT2G30210 | 64.151 | 106 | 38 | 0 | 153 | 258 | 407 | 512 | 9.04e-42 | 150 |
MsG0580029257.01.T01 | AT5G07130 | 72.222 | 126 | 33 | 2 | 11 | 134 | 81 | 206 | 2.70e-59 | 197 |
MsG0580029257.01.T01 | AT5G07130 | 69.663 | 89 | 27 | 0 | 160 | 248 | 413 | 501 | 4.55e-38 | 140 |
MsG0580029257.01.T01 | AT5G60020 | 64.516 | 124 | 44 | 0 | 11 | 134 | 82 | 205 | 1.96e-56 | 189 |
MsG0580029257.01.T01 | AT5G60020 | 42.857 | 98 | 55 | 1 | 159 | 256 | 421 | 517 | 1.51e-20 | 90.9 |
MsG0580029257.01.T01 | AT2G29130 | 66.935 | 124 | 41 | 0 | 11 | 134 | 87 | 210 | 2.84e-56 | 189 |
MsG0580029257.01.T01 | AT2G29130 | 46.875 | 96 | 50 | 1 | 159 | 254 | 417 | 511 | 3.10e-22 | 95.9 |
MsG0580029257.01.T01 | AT5G60020 | 64.516 | 124 | 44 | 0 | 11 | 134 | 50 | 173 | 8.95e-56 | 187 |
MsG0580029257.01.T01 | AT5G60020 | 42.857 | 98 | 55 | 1 | 159 | 256 | 389 | 485 | 1.76e-20 | 90.9 |
MsG0580029257.01.T01 | AT5G07130 | 71.901 | 121 | 32 | 2 | 16 | 134 | 1 | 121 | 9.19e-56 | 186 |
MsG0580029257.01.T01 | AT5G07130 | 69.663 | 89 | 27 | 0 | 160 | 248 | 328 | 416 | 1.73e-38 | 140 |
MsG0580029257.01.T01 | AT5G07130 | 71.901 | 121 | 32 | 2 | 16 | 134 | 1 | 121 | 9.19e-56 | 186 |
MsG0580029257.01.T01 | AT5G07130 | 69.663 | 89 | 27 | 0 | 160 | 248 | 328 | 416 | 1.73e-38 | 140 |
MsG0580029257.01.T01 | AT5G60020 | 64.516 | 124 | 44 | 0 | 11 | 134 | 82 | 205 | 9.58e-56 | 188 |
MsG0580029257.01.T01 | AT5G60020 | 43.750 | 96 | 53 | 1 | 159 | 254 | 421 | 515 | 1.78e-20 | 90.9 |
MsG0580029257.01.T01 | AT5G09360 | 64.228 | 123 | 43 | 1 | 11 | 132 | 93 | 215 | 1.33e-52 | 179 |
MsG0580029257.01.T01 | AT5G09360 | 40.426 | 141 | 75 | 4 | 114 | 253 | 374 | 506 | 9.60e-22 | 94.4 |
MsG0580029257.01.T01 | AT5G01190 | 60.800 | 125 | 49 | 0 | 11 | 135 | 68 | 192 | 1.37e-52 | 179 |
MsG0580029257.01.T01 | AT5G01190 | 52.941 | 102 | 47 | 1 | 153 | 254 | 382 | 482 | 1.99e-27 | 110 |
MsG0580029257.01.T01 | AT5G01190 | 60.800 | 125 | 49 | 0 | 11 | 135 | 82 | 206 | 1.45e-52 | 179 |
MsG0580029257.01.T01 | AT5G01190 | 52.941 | 102 | 47 | 1 | 153 | 254 | 396 | 496 | 2.06e-27 | 110 |
MsG0580029257.01.T01 | AT2G38080 | 59.200 | 125 | 51 | 0 | 11 | 135 | 84 | 208 | 1.74e-52 | 179 |
MsG0580029257.01.T01 | AT2G38080 | 46.078 | 102 | 54 | 1 | 153 | 254 | 396 | 496 | 2.33e-24 | 102 |
MsG0580029257.01.T01 | AT3G09220 | 63.115 | 122 | 45 | 0 | 11 | 132 | 83 | 204 | 5.58e-52 | 178 |
MsG0580029257.01.T01 | AT3G09220 | 49.474 | 95 | 44 | 2 | 158 | 248 | 405 | 499 | 7.45e-25 | 103 |
MsG0580029257.01.T01 | AT5G03260 | 58.871 | 124 | 51 | 0 | 11 | 134 | 83 | 206 | 1.41e-48 | 169 |
MsG0580029257.01.T01 | AT5G03260 | 38.298 | 141 | 73 | 1 | 128 | 254 | 355 | 495 | 6.36e-27 | 109 |
MsG0580029257.01.T01 | AT5G58910 | 53.077 | 130 | 61 | 0 | 11 | 140 | 86 | 215 | 1.45e-47 | 166 |
MsG0580029257.01.T01 | AT5G58910 | 43.689 | 103 | 57 | 1 | 153 | 254 | 402 | 504 | 2.25e-23 | 99.4 |
MsG0580029257.01.T01 | AT5G58910 | 53.077 | 130 | 61 | 0 | 11 | 140 | 87 | 216 | 1.52e-47 | 166 |
MsG0580029257.01.T01 | AT5G58910 | 43.689 | 103 | 57 | 1 | 153 | 254 | 403 | 505 | 2.44e-23 | 99.0 |
MsG0580029257.01.T01 | AT3G09220 | 64.486 | 107 | 38 | 0 | 26 | 132 | 1 | 107 | 5.15e-46 | 160 |
MsG0580029257.01.T01 | AT3G09220 | 49.474 | 95 | 44 | 2 | 158 | 248 | 308 | 402 | 6.71e-25 | 103 |
MsG0580029257.01.T01 | AT1G18140 | 46.328 | 177 | 75 | 3 | 11 | 169 | 86 | 260 | 4.19e-45 | 159 |
MsG0580029257.01.T01 | AT1G18140 | 46.602 | 103 | 52 | 2 | 154 | 254 | 418 | 519 | 1.60e-24 | 102 |
MsG0580029257.01.T01 | AT5G48100 | 53.279 | 122 | 57 | 0 | 11 | 132 | 79 | 200 | 4.29e-43 | 154 |
MsG0580029257.01.T01 | AT5G48100 | 40.404 | 99 | 55 | 3 | 153 | 247 | 396 | 494 | 8.30e-15 | 74.3 |
MsG0580029257.01.T01 | AT5G58910 | 52.033 | 123 | 59 | 0 | 18 | 140 | 50 | 172 | 1.65e-42 | 152 |
MsG0580029257.01.T01 | AT5G58910 | 43.689 | 103 | 57 | 1 | 153 | 254 | 359 | 461 | 1.85e-23 | 99.4 |
MsG0580029257.01.T01 | AT2G46570 | 52.381 | 126 | 60 | 0 | 11 | 136 | 4 | 129 | 2.90e-42 | 150 |
MsG0580029257.01.T01 | AT2G46570 | 32.121 | 165 | 92 | 5 | 100 | 247 | 254 | 415 | 1.02e-18 | 85.5 |
MsG0580029257.01.T01 | AT2G46570 | 52.381 | 126 | 60 | 0 | 11 | 136 | 89 | 214 | 5.95e-42 | 151 |
MsG0580029257.01.T01 | AT2G46570 | 32.121 | 165 | 92 | 5 | 100 | 247 | 339 | 500 | 1.20e-18 | 85.5 |
MsG0580029257.01.T01 | AT5G01040 | 50.388 | 129 | 58 | 2 | 11 | 139 | 85 | 207 | 2.95e-37 | 138 |
MsG0580029257.01.T01 | AT5G01040 | 45.714 | 105 | 52 | 1 | 148 | 247 | 393 | 497 | 3.02e-27 | 110 |
MsG0580029257.01.T01 | AT5G01050 | 48.837 | 129 | 60 | 2 | 11 | 139 | 85 | 207 | 1.64e-36 | 136 |
MsG0580029257.01.T01 | AT5G01050 | 38.849 | 139 | 59 | 2 | 135 | 247 | 361 | 499 | 4.09e-26 | 107 |
MsG0580029257.01.T01 | AT4G37160 | 29.448 | 163 | 102 | 4 | 11 | 163 | 88 | 247 | 1.34e-13 | 70.5 |
MsG0580029257.01.T01 | AT5G21100 | 44.828 | 87 | 40 | 4 | 11 | 95 | 82 | 162 | 1.90e-13 | 70.1 |
MsG0580029257.01.T01 | AT4G37160 | 29.448 | 163 | 102 | 4 | 11 | 163 | 88 | 247 | 2.11e-13 | 70.1 |
MsG0580029257.01.T01 | AT5G21105 | 41.860 | 86 | 47 | 3 | 11 | 95 | 96 | 179 | 1.36e-12 | 67.8 |
MsG0580029257.01.T01 | AT5G21105 | 41.860 | 86 | 47 | 3 | 11 | 95 | 96 | 179 | 1.36e-12 | 67.4 |
MsG0580029257.01.T01 | AT4G39830 | 32.639 | 144 | 82 | 7 | 4 | 143 | 84 | 216 | 3.09e-12 | 66.6 |
Find 74 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCTATAGATTTACCATTAA+TGG | 0.101466 | 5:-94369081 | MsG0580029257.01.T01:CDS |
TGTACCTTCTTGTCCATTAA+TGG | 0.180702 | 5:+94369068 | None:intergenic |
TGGCTTAGAGCCACAGTTTA+TGG | 0.186697 | 5:-94369021 | MsG0580029257.01.T01:CDS |
CGTGAAACACCCATTCTTCT+AGG | 0.253813 | 5:-94368943 | MsG0580029257.01.T01:intron |
TATATTGTTGCTGAGGGATT+TGG | 0.270036 | 5:-94367275 | MsG0580029257.01.T01:CDS |
TCTGATGCATACACTATTAA+TGG | 0.273121 | 5:-94368522 | MsG0580029257.01.T01:CDS |
AAAGTTACTAAGTTGAGATT+TGG | 0.284792 | 5:-94367380 | MsG0580029257.01.T01:CDS |
GGTGGCATGCTCATAGTTCA+TGG | 0.302145 | 5:-94369041 | MsG0580029257.01.T01:CDS |
GTGTATGCATCAGATATATT+TGG | 0.328938 | 5:+94368531 | None:intergenic |
GGACATTGAGTCACAAATTC+TGG | 0.334936 | 5:+94369126 | None:intergenic |
AATCACCCTATTCATCTTCA+TGG | 0.351556 | 5:-94367308 | MsG0580029257.01.T01:CDS |
TCATATCCATGAAGATGAAT+AGG | 0.353366 | 5:+94367302 | None:intergenic |
ACTGTTGCTGTACCTGTTAA+TGG | 0.355769 | 5:-94367193 | None:intergenic |
GGATAAGCATCTCCTTCCTT+AGG | 0.376333 | 5:+94368982 | None:intergenic |
GAGATTTGGATCAAGGGTTC+AGG | 0.378810 | 5:-94367366 | MsG0580029257.01.T01:CDS |
GATAACTGCCCACCATTAAC+AGG | 0.397885 | 5:+94367181 | None:intergenic |
AGAATGGGTGTTTCACGCTT+TGG | 0.403573 | 5:+94368949 | None:intergenic |
CTAAGTTGAGATTTGGATCA+AGG | 0.404145 | 5:-94367373 | MsG0580029257.01.T01:CDS |
TCCATTAATGGTAAATCTAT+AGG | 0.411836 | 5:+94369080 | None:intergenic |
CAATGACCGACTCACATTAC+CGG | 0.413180 | 5:+94367424 | None:intergenic |
ATCCTGCAGGCTCATAAACT+TGG | 0.437751 | 5:-94367506 | MsG0580029257.01.T01:intron |
ATGATCATTACCTAGAAGAA+TGG | 0.443551 | 5:+94368933 | None:intergenic |
TAACTTTCTCCAGGACGAAT+AGG | 0.449717 | 5:+94369105 | None:intergenic |
GCTTGTCTCACAACGTCCAT+AGG | 0.454702 | 5:+94368573 | None:intergenic |
CATATCCATGAAGATGAATA+GGG | 0.455044 | 5:+94367303 | None:intergenic |
GTGAGACAAGCCACACAAAC+AGG | 0.463678 | 5:-94368561 | MsG0580029257.01.T01:CDS |
TAACCTTGTTTCCACCTATG+AGG | 0.468520 | 5:-94367219 | MsG0580029257.01.T01:CDS |
TCATTGTGGCAACCGATTCA+AGG | 0.473488 | 5:-94367407 | MsG0580029257.01.T01:CDS |
GTAACTTTAGTCCCTTGAAT+CGG | 0.482864 | 5:+94367395 | None:intergenic |
GAAGAAAATTGCTAAGAAGA+TGG | 0.483676 | 5:+94370228 | None:intergenic |
TGATCATTACCTAGAAGAAT+GGG | 0.490111 | 5:+94368934 | None:intergenic |
AAACTCGTGCTCATGAACTT+TGG | 0.490870 | 5:+94370184 | None:intergenic |
TTGATTTGCATTAAATTCGA+TGG | 0.492460 | 5:+94367604 | None:intergenic |
ACAGCAACAGTGTTCCTCAT+AGG | 0.495749 | 5:+94367205 | None:intergenic |
GGGGTTAGACAAATCAGAAC+AGG | 0.499855 | 5:-94369162 | MsG0580029257.01.T01:CDS |
GATAAGCATCTCCTTCCTTA+GGG | 0.506054 | 5:+94368983 | None:intergenic |
TCACGCTTTGGCTTAGTGAA+AGG | 0.510131 | 5:+94368961 | None:intergenic |
AGATGAATAGGGTGATTCTC+AGG | 0.517564 | 5:+94367314 | None:intergenic |
ATCAGAACAGGATGGGCTGA+TGG | 0.518148 | 5:-94369150 | MsG0580029257.01.T01:CDS |
ACTCAATGTCCTATTCGTCC+TGG | 0.520865 | 5:-94369114 | MsG0580029257.01.T01:CDS |
GCTCATAAACTTGGAGTACA+AGG | 0.524236 | 5:-94367497 | MsG0580029257.01.T01:CDS |
TTTACCATTAATGGACAAGA+AGG | 0.529526 | 5:-94369072 | MsG0580029257.01.T01:CDS |
ATGTGTGTGAATGAAGGTTA+AGG | 0.535530 | 5:+94370299 | None:intergenic |
GTTAAGGTTACAAATTGCAA+TGG | 0.537808 | 5:+94370315 | None:intergenic |
CTTGTCTCACAACGTCCATA+GGG | 0.540309 | 5:+94368574 | None:intergenic |
TGATTTCTATATTGTTGCTG+AGG | 0.540678 | 5:-94367282 | MsG0580029257.01.T01:CDS |
CTTTACAAGTGCTCTACCAA+AGG | 0.542011 | 5:-94368486 | MsG0580029257.01.T01:intron |
ATGGTGGGATGCAAACCCTA+TGG | 0.544024 | 5:-94368589 | MsG0580029257.01.T01:CDS |
CTATAGGTGTAACTTTCTCC+AGG | 0.545148 | 5:+94369096 | None:intergenic |
TAAGTTGAGATTTGGATCAA+GGG | 0.547755 | 5:-94367372 | MsG0580029257.01.T01:CDS |
GATTTCTATATTGTTGCTGA+GGG | 0.549381 | 5:-94367281 | MsG0580029257.01.T01:CDS |
TGGAGCTGCTCCTGTTTGTG+TGG | 0.553190 | 5:+94368551 | None:intergenic |
AAAACAATGTGTGTGAATGA+AGG | 0.555844 | 5:+94370293 | None:intergenic |
CATTGTGGCAACCGATTCAA+GGG | 0.556129 | 5:-94367406 | MsG0580029257.01.T01:CDS |
ACCGGTGTAATCAAATTGCA+CGG | 0.556156 | 5:+94367442 | None:intergenic |
AGCTCTAATCATTCACCCTA+AGG | 0.560869 | 5:-94368998 | MsG0580029257.01.T01:CDS |
GACAAGAAGGTACACTTTGG+TGG | 0.574088 | 5:-94369059 | MsG0580029257.01.T01:CDS |
TTTAATGCAAATCAATGTCA+AGG | 0.575203 | 5:-94367596 | MsG0580029257.01.T01:CDS |
TTGTTTAATACTCTAAACAA+TGG | 0.576331 | 5:-94370263 | MsG0580029257.01.T01:five_prime_UTR |
TACACTATTAATGGTCAACC+TGG | 0.583665 | 5:-94368513 | MsG0580029257.01.T01:CDS |
CTAATCATTCACCCTAAGGA+AGG | 0.586825 | 5:-94368994 | MsG0580029257.01.T01:CDS |
ATGGACAAGAAGGTACACTT+TGG | 0.605647 | 5:-94369062 | MsG0580029257.01.T01:CDS |
TAGACAAATCAGAACAGGAT+GGG | 0.611575 | 5:-94369157 | MsG0580029257.01.T01:CDS |
GAGCACTTGTAAAGATCACC+AGG | 0.619435 | 5:+94368495 | None:intergenic |
GCAACAGTGTTCCTCATAGG+TGG | 0.621280 | 5:+94367208 | None:intergenic |
GTGTAATCAAATTGCACGGG+AGG | 0.625603 | 5:+94367446 | None:intergenic |
CCGGTGTAATCAAATTGCAC+GGG | 0.626025 | 5:+94367443 | None:intergenic |
ATTACACCGGTAATGTGAGT+CGG | 0.633330 | 5:-94367430 | MsG0580029257.01.T01:CDS |
GTTCCTCATAGGTGGAAACA+AGG | 0.635614 | 5:+94367216 | None:intergenic |
GTAATGTGAGTCGGTCATTG+TGG | 0.663037 | 5:-94367421 | MsG0580029257.01.T01:CDS |
AATCAATGTCAAGGACCGAA+CGG | 0.668939 | 5:-94367587 | MsG0580029257.01.T01:intron |
CCCGTGCAATTTGATTACAC+CGG | 0.670640 | 5:-94367443 | MsG0580029257.01.T01:CDS |
TTAGACAAATCAGAACAGGA+TGG | 0.677485 | 5:-94369158 | MsG0580029257.01.T01:CDS |
GATTAGAGCTCCATAAACTG+TGG | 0.691733 | 5:+94369011 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTATAAAAATACTATTATA+TGG | + | Chr5:94368149-94368168 | None:intergenic | 10.0% |
!! | ATTAACAACTAAAAATAAAA+AGG | + | Chr5:94367380-94367399 | None:intergenic | 10.0% |
!! | CAATTAATTTATTATGTATA+TGG | + | Chr5:94369249-94369268 | None:intergenic | 10.0% |
!! | TTAACAACTAAAAATAAAAA+GGG | + | Chr5:94367379-94367398 | None:intergenic | 10.0% |
!!! | ATAATAGTATTTTTATAGTA+GGG | - | Chr5:94368150-94368169 | MsG0580029257.01.T01:intron | 10.0% |
!!! | ATGATGATTATTTTTTAATT+AGG | - | Chr5:94368894-94368913 | MsG0580029257.01.T01:intron | 10.0% |
!!! | TATAATAGTATTTTTATAGT+AGG | - | Chr5:94368149-94368168 | MsG0580029257.01.T01:intron | 10.0% |
!!! | TGATGATTATTTTTTAATTA+GGG | - | Chr5:94368895-94368914 | MsG0580029257.01.T01:intron | 10.0% |
!!! | TTTTTTCAATTTGTTAATTA+AGG | - | Chr5:94368760-94368779 | MsG0580029257.01.T01:intron | 10.0% |
!! | AGATAAGAATTAAAATAAGT+TGG | + | Chr5:94368718-94368737 | None:intergenic | 15.0% |
!! | GGAGATTAATTATAATTAAT+TGG | - | Chr5:94367409-94367428 | MsG0580029257.01.T01:CDS | 15.0% |
!! | TAAAAATACTATTATATGGA+AGG | + | Chr5:94368145-94368164 | None:intergenic | 15.0% |
!! | TACCATTAAAATTTAAATTG+TGG | + | Chr5:94368230-94368249 | None:intergenic | 15.0% |
!! | TGCAAATAATCAATAATTTA+TGG | - | Chr5:94368291-94368310 | MsG0580029257.01.T01:intron | 15.0% |
!! | TTCAAAAATCAAAAACAAAA+AGG | + | Chr5:94368100-94368119 | None:intergenic | 15.0% |
!!! | AACCACAATTTAAATTTTAA+TGG | - | Chr5:94368225-94368244 | MsG0580029257.01.T01:intron | 15.0% |
!!! | GATGATTATTTTTTAATTAG+GGG | - | Chr5:94368896-94368915 | MsG0580029257.01.T01:intron | 15.0% |
!!! | TAAGCAAAAATCAATATTTT+AGG | + | Chr5:94369278-94369297 | None:intergenic | 15.0% |
!! | AAGAATTTGTATATAGGAAA+AGG | - | Chr5:94367768-94367787 | MsG0580029257.01.T01:intron | 20.0% |
!! | AATCTTTGTCTAAAAAGAAA+AGG | + | Chr5:94368836-94368855 | None:intergenic | 20.0% |
!! | AATGATCATATGTCAAATAA+TGG | + | Chr5:94369389-94369408 | None:intergenic | 20.0% |
!! | ACATAAAATAATCAAACCTT+TGG | + | Chr5:94369042-94369061 | None:intergenic | 20.0% |
!! | ATGCATGCTATAATTTATAA+AGG | - | Chr5:94368258-94368277 | MsG0580029257.01.T01:intron | 20.0% |
!! | ATTATTTGACATATGATCAT+TGG | - | Chr5:94369388-94369407 | MsG0580029257.01.T01:intron | 20.0% |
!! | GAAAACTAAAAGTAACTATA+TGG | + | Chr5:94368047-94368066 | None:intergenic | 20.0% |
!! | TAATGAGTTTAAGAAAATCA+GGG | - | Chr5:94368014-94368033 | MsG0580029257.01.T01:intron | 20.0% |
!! | TAATTATAATTAATCTCCCA+AGG | + | Chr5:94367407-94367426 | None:intergenic | 20.0% |
!! | TGTACTAAGAATTTGTATAT+AGG | - | Chr5:94367762-94367781 | MsG0580029257.01.T01:intron | 20.0% |
!! | TTAATGAGTTTAAGAAAATC+AGG | - | Chr5:94368013-94368032 | MsG0580029257.01.T01:intron | 20.0% |
!! | TTAGTTGTTAATTTAACCTT+GGG | - | Chr5:94367388-94367407 | MsG0580029257.01.T01:CDS | 20.0% |
!! | TTGATATTATTACCAATGAA+TGG | + | Chr5:94367596-94367615 | None:intergenic | 20.0% |
!! | TTGTTTAATACTCTAAACAA+TGG | - | Chr5:94367246-94367265 | MsG0580029257.01.T01:CDS | 20.0% |
!! | TTTAGTTGTTAATTTAACCT+TGG | - | Chr5:94367387-94367406 | MsG0580029257.01.T01:CDS | 20.0% |
!!! | CCAATTAAATTTGTTATTGA+CGG | + | Chr5:94367902-94367921 | None:intergenic | 20.0% |
!!! | TATATGGTCTTTTTAAATGT+CGG | + | Chr5:94369233-94369252 | None:intergenic | 20.0% |
!!! | TTATTGCATTTTGAATCTTT+AGG | - | Chr5:94368321-94368340 | MsG0580029257.01.T01:intron | 20.0% |
!!! | TTATTTTTTAATTAGGGGAA+TGG | - | Chr5:94368901-94368920 | MsG0580029257.01.T01:intron | 20.0% |
!!! | TTTTTGCTTATAATAGTGAT+CGG | - | Chr5:94369288-94369307 | MsG0580029257.01.T01:intron | 20.0% |
! | AATGGAAAAATGTTTAGTCA+TGG | + | Chr5:94369371-94369390 | None:intergenic | 25.0% |
! | ACCTATAGATTTACCATTAA+TGG | - | Chr5:94368428-94368447 | MsG0580029257.01.T01:intron | 25.0% |
! | AGAATTCAATAAGTGATTGA+AGG | + | Chr5:94369335-94369354 | None:intergenic | 25.0% |
! | AGATCTTCATCAATTTCATT+AGG | + | Chr5:94369851-94369870 | None:intergenic | 25.0% |
! | CCATTATTAATTTCCAAAGT+TGG | + | Chr5:94367527-94367546 | None:intergenic | 25.0% |
! | CCGTCAATAACAAATTTAAT+TGG | - | Chr5:94367899-94367918 | MsG0580029257.01.T01:intron | 25.0% |
! | TCCATTAATGGTAAATCTAT+AGG | + | Chr5:94368432-94368451 | None:intergenic | 25.0% |
! | TTGTATATAGGAAAAGGAAA+AGG | - | Chr5:94367774-94367793 | MsG0580029257.01.T01:intron | 25.0% |
! | TTTAATGCAAATCAATGTCA+AGG | - | Chr5:94369913-94369932 | MsG0580029257.01.T01:intron | 25.0% |
!! | AAAGTTACTAAGTTGAGATT+TGG | - | Chr5:94370129-94370148 | MsG0580029257.01.T01:intron | 25.0% |
!! | CCAACTTTGGAAATTAATAA+TGG | - | Chr5:94367524-94367543 | MsG0580029257.01.T01:intron | 25.0% |
!! | TGATGATTTGTATTCAAGAA+TGG | + | Chr5:94369705-94369724 | None:intergenic | 25.0% |
!!! | AATTTTGAAGCATCTTTCTT+AGG | + | Chr5:94370270-94370289 | None:intergenic | 25.0% |
!!! | ATTTTGAAGCATCTTTCTTA+GGG | + | Chr5:94370269-94370288 | None:intergenic | 25.0% |
!!! | GTAAAAGCTTTAGAAGTTTA+AGG | - | Chr5:94369813-94369832 | MsG0580029257.01.T01:intron | 25.0% |
!!! | TTGATTTGCATTAAATTCGA+TGG | + | Chr5:94369908-94369927 | None:intergenic | 25.0% |
AAAACAATGTGTGTGAATGA+AGG | + | Chr5:94367219-94367238 | None:intergenic | 30.0% | |
AACCATAAACTAACAGTAGT+AGG | - | Chr5:94369510-94369529 | MsG0580029257.01.T01:intron | 30.0% | |
ATAGGAAAAGGAAAAGGAAA+AGG | - | Chr5:94367780-94367799 | MsG0580029257.01.T01:intron | 30.0% | |
ATGATCATTACCTAGAAGAA+TGG | + | Chr5:94368579-94368598 | None:intergenic | 30.0% | |
CATATCCATGAAGATGAATA+GGG | + | Chr5:94370209-94370228 | None:intergenic | 30.0% | |
GAAGAAAATTGCTAAGAAGA+TGG | + | Chr5:94367284-94367303 | None:intergenic | 30.0% | |
GACAAAGATTATGTTCATGA+TGG | - | Chr5:94368846-94368865 | MsG0580029257.01.T01:intron | 30.0% | |
GATTTCTATATTGTTGCTGA+GGG | - | Chr5:94370228-94370247 | MsG0580029257.01.T01:five_prime_UTR | 30.0% | |
GGCATGTTTATTAATGTGAA+AGG | - | Chr5:94367430-94367449 | MsG0580029257.01.T01:CDS | 30.0% | |
GTGTATGCATCAGATATATT+TGG | + | Chr5:94368981-94369000 | None:intergenic | 30.0% | |
TCATATCCATGAAGATGAAT+AGG | + | Chr5:94370210-94370229 | None:intergenic | 30.0% | |
TCTAGATAAATTGCAATGCT+CGG | - | Chr5:94367958-94367977 | MsG0580029257.01.T01:intron | 30.0% | |
TCTGATGCATACACTATTAA+TGG | - | Chr5:94368987-94369006 | MsG0580029257.01.T01:CDS | 30.0% | |
TGATCATTACCTAGAAGAAT+GGG | + | Chr5:94368578-94368597 | None:intergenic | 30.0% | |
TGATTTCTATATTGTTGCTG+AGG | - | Chr5:94370227-94370246 | MsG0580029257.01.T01:five_prime_UTR | 30.0% | |
TTTGCAATTGTGAAGAAAAG+AGG | + | Chr5:94369492-94369511 | None:intergenic | 30.0% | |
! | ACAATTGTTCCAATTGATTC+AGG | - | Chr5:94369424-94369443 | MsG0580029257.01.T01:intron | 30.0% |
! | ATTTTGAATCTTTAGGCATG+GGG | - | Chr5:94368328-94368347 | MsG0580029257.01.T01:intron | 30.0% |
! | CATTTTGAATCTTTAGGCAT+GGG | - | Chr5:94368327-94368346 | MsG0580029257.01.T01:intron | 30.0% |
! | CTTTTCTTTACCATTGGATT+AGG | - | Chr5:94369869-94369888 | MsG0580029257.01.T01:intron | 30.0% |
! | GAAGATCTTTTCTTTACCAT+TGG | - | Chr5:94369863-94369882 | MsG0580029257.01.T01:intron | 30.0% |
! | GAAGGTGTAAGAAAACAAAA+AGG | + | Chr5:94368127-94368146 | None:intergenic | 30.0% |
! | TAAGTTGAGATTTGGATCAA+GGG | - | Chr5:94370137-94370156 | MsG0580029257.01.T01:intron | 30.0% |
! | TCTTAGCAATTTTCTTCTCT+TGG | - | Chr5:94367287-94367306 | MsG0580029257.01.T01:CDS | 30.0% |
! | TTTACCATTAATGGACAAGA+AGG | - | Chr5:94368437-94368456 | MsG0580029257.01.T01:intron | 30.0% |
!! | TTTGTTATTGACGGAAATCA+AGG | + | Chr5:94367893-94367912 | None:intergenic | 30.0% |
!! | TTTTTAATTAGGGGAATGGT+GGG | - | Chr5:94368905-94368924 | MsG0580029257.01.T01:intron | 30.0% |
!!! | TTTTTTAATTAGGGGAATGG+TGG | - | Chr5:94368904-94368923 | MsG0580029257.01.T01:intron | 30.0% |
AAAAGGAATGTCACTCTACA+TGG | + | Chr5:94368083-94368102 | None:intergenic | 35.0% | |
AATCACCCTATTCATCTTCA+TGG | - | Chr5:94370201-94370220 | MsG0580029257.01.T01:exon | 35.0% | |
ACAACCAATGTTCTCATGTT+AGG | - | Chr5:94369561-94369580 | MsG0580029257.01.T01:intron | 35.0% | |
ACTGTAAATGGACAATTTCC+TGG | - | Chr5:94367500-94367519 | MsG0580029257.01.T01:CDS | 35.0% | |
ATAAATTGCAATGCTCGGAA+AGG | - | Chr5:94367963-94367982 | MsG0580029257.01.T01:intron | 35.0% | |
ATGTGTGTGAATGAAGGTTA+AGG | + | Chr5:94367213-94367232 | None:intergenic | 35.0% | |
ATTGTTGAGTCCTAATCCAA+TGG | + | Chr5:94369882-94369901 | None:intergenic | 35.0% | |
CAAATGAGCATCACTGTAAA+TGG | - | Chr5:94367488-94367507 | MsG0580029257.01.T01:CDS | 35.0% | |
GTAACTTTAGTCCCTTGAAT+CGG | + | Chr5:94370117-94370136 | None:intergenic | 35.0% | |
GTTACAATGTCACCATTCAT+TGG | - | Chr5:94367581-94367600 | MsG0580029257.01.T01:intron | 35.0% | |
TAAATTGCAATGCTCGGAAA+GGG | - | Chr5:94367964-94367983 | MsG0580029257.01.T01:intron | 35.0% | |
TACACTATTAATGGTCAACC+TGG | - | Chr5:94368996-94369015 | MsG0580029257.01.T01:CDS | 35.0% | |
TAGACAAATCAGAACAGGAT+GGG | - | Chr5:94368352-94368371 | MsG0580029257.01.T01:intron | 35.0% | |
TATATTGTTGCTGAGGGATT+TGG | - | Chr5:94370234-94370253 | MsG0580029257.01.T01:five_prime_UTR | 35.0% | |
TCATTGTAAGCAGGTAATGA+AGG | + | Chr5:94369770-94369789 | None:intergenic | 35.0% | |
TCTTAGTACAAGTGTGAAGA+AGG | + | Chr5:94367752-94367771 | None:intergenic | 35.0% | |
TGCAGGATTGAAAAATTGCT+AGG | + | Chr5:94369991-94370010 | None:intergenic | 35.0% | |
TGTACCTTCTTGTCCATTAA+TGG | + | Chr5:94368444-94368463 | None:intergenic | 35.0% | |
TTAATTTCCAAAGTTGGACC+AGG | + | Chr5:94367521-94367540 | None:intergenic | 35.0% | |
TTAGACAAATCAGAACAGGA+TGG | - | Chr5:94368351-94368370 | MsG0580029257.01.T01:intron | 35.0% | |
TTGCTTATAATAGTGATCGG+AGG | - | Chr5:94369291-94369310 | MsG0580029257.01.T01:intron | 35.0% | |
TTTGTATTCAAGAATGGCAG+TGG | + | Chr5:94369699-94369718 | None:intergenic | 35.0% | |
! | ATGAGAACATTGGTTGTGAA+TGG | + | Chr5:94369558-94369577 | None:intergenic | 35.0% |
! | CACCTACTACTGTTAGTTTA+TGG | + | Chr5:94369515-94369534 | None:intergenic | 35.0% |
! | CTAAGTTGAGATTTGGATCA+AGG | - | Chr5:94370136-94370155 | MsG0580029257.01.T01:intron | 35.0% |
! | GACACTCTTCATTTTACAAG+TGG | + | Chr5:94368687-94368706 | None:intergenic | 35.0% |
! | GATTATGTTCATGATGGAGA+TGG | - | Chr5:94368852-94368871 | MsG0580029257.01.T01:intron | 35.0% |
! | GCATTTTGAATCTTTAGGCA+TGG | - | Chr5:94368326-94368345 | MsG0580029257.01.T01:intron | 35.0% |
! | TCATGATGGAGATGGTTTAA+CGG | - | Chr5:94368860-94368879 | MsG0580029257.01.T01:intron | 35.0% |
!! | AAAAAGTGTTTGCTTGCTTG+TGG | + | Chr5:94367725-94367744 | None:intergenic | 35.0% |
!! | AAAAGTGTTTGCTTGCTTGT+GGG | + | Chr5:94367724-94367743 | None:intergenic | 35.0% |
!! | AGTACAAGGTGTTTTTACGA+CGG | - | Chr5:94370026-94370045 | MsG0580029257.01.T01:intron | 35.0% |
!! | GTTGTTTCTCCTGAATCAAT+TGG | + | Chr5:94369436-94369455 | None:intergenic | 35.0% |
!! | TAGCAATTTTTCAATCCTGC+AGG | - | Chr5:94369990-94370009 | MsG0580029257.01.T01:intron | 35.0% |
AAACTCGTGCTCATGAACTT+TGG | + | Chr5:94367328-94367347 | None:intergenic | 40.0% | |
AATCAATGTCAAGGACCGAA+CGG | - | Chr5:94369922-94369941 | MsG0580029257.01.T01:intron | 40.0% | |
AATGTTCTCATGTTAGGACC+TGG | - | Chr5:94369567-94369586 | MsG0580029257.01.T01:intron | 40.0% | |
ACAATTTCCTGGTCCAACTT+TGG | - | Chr5:94367511-94367530 | MsG0580029257.01.T01:intron | 40.0% | |
ACCACTGATGTTCTAATCCA+AGG | - | Chr5:94369594-94369613 | MsG0580029257.01.T01:intron | 40.0% | |
ACCGGTGTAATCAAATTGCA+CGG | + | Chr5:94370070-94370089 | None:intergenic | 40.0% | |
AGATGAATAGGGTGATTCTC+AGG | + | Chr5:94370198-94370217 | None:intergenic | 40.0% | |
AGGTCCTAACATGAGAACAT+TGG | + | Chr5:94369568-94369587 | None:intergenic | 40.0% | |
ATTACACCGGTAATGTGAGT+CGG | - | Chr5:94370079-94370098 | MsG0580029257.01.T01:intron | 40.0% | |
CATATGATCATTGGCAATGC+AGG | - | Chr5:94369397-94369416 | MsG0580029257.01.T01:intron | 40.0% | |
CTAATCATTCACCCTAAGGA+AGG | - | Chr5:94368515-94368534 | MsG0580029257.01.T01:CDS | 40.0% | |
CTATAGGTGTAACTTTCTCC+AGG | + | Chr5:94368416-94368435 | None:intergenic | 40.0% | |
CTTTACAAGTGCTCTACCAA+AGG | - | Chr5:94369023-94369042 | MsG0580029257.01.T01:CDS | 40.0% | |
GATAAGCATCTCCTTCCTTA+GGG | + | Chr5:94368529-94368548 | None:intergenic | 40.0% | |
GATTAGAGCTCCATAAACTG+TGG | + | Chr5:94368501-94368520 | None:intergenic | 40.0% | |
GCTCATAAACTTGGAGTACA+AGG | - | Chr5:94370012-94370031 | MsG0580029257.01.T01:intron | 40.0% | |
GGACATTGAGTCACAAATTC+TGG | + | Chr5:94368386-94368405 | None:intergenic | 40.0% | |
GGATTAGAACATCAGTGGTT+TGG | + | Chr5:94369593-94369612 | None:intergenic | 40.0% | |
GGTTGTGAATGGTTTGACAT+AGG | + | Chr5:94369547-94369566 | None:intergenic | 40.0% | |
GTTATTGACGGAAATCAAGG+AGG | + | Chr5:94367890-94367909 | None:intergenic | 40.0% | |
TAACTTTCTCCAGGACGAAT+AGG | + | Chr5:94368407-94368426 | None:intergenic | 40.0% | |
! | ACCTTGGATTAGAACATCAG+TGG | + | Chr5:94369598-94369617 | None:intergenic | 40.0% |
! | AGCTCTAATCATTCACCCTA+AGG | - | Chr5:94368511-94368530 | MsG0580029257.01.T01:CDS | 40.0% |
! | ATGGACAAGAAGGTACACTT+TGG | - | Chr5:94368447-94368466 | MsG0580029257.01.T01:intron | 40.0% |
! | GTGTTTGTGTCATTGTAAGC+AGG | + | Chr5:94369779-94369798 | None:intergenic | 40.0% |
! | TAACCTTGTTTCCACCTATG+AGG | - | Chr5:94370290-94370309 | MsG0580029257.01.T01:five_prime_UTR | 40.0% |
!! | CAGCATTGATTACTCTTAGG+AGG | + | Chr5:94369458-94369477 | None:intergenic | 40.0% |
!! | GTGCAGCATTGATTACTCTT+AGG | + | Chr5:94369461-94369480 | None:intergenic | 40.0% |
!! | TGTAGTATCTTGATGGTGGT+TGG | + | Chr5:94369623-94369642 | None:intergenic | 40.0% |
ACAGCAACAGTGTTCCTCAT+AGG | + | Chr5:94370307-94370326 | None:intergenic | 45.0% | |
ACTCAATGTCCTATTCGTCC+TGG | - | Chr5:94368395-94368414 | MsG0580029257.01.T01:intron | 45.0% | |
AGAATGGGTGTTTCACGCTT+TGG | + | Chr5:94368563-94368582 | None:intergenic | 45.0% | |
ATCATCACCTTGTCCTGCAA+AGG | - | Chr5:94369718-94369737 | MsG0580029257.01.T01:intron | 45.0% | |
ATCCTGCAGGCTCATAAACT+TGG | - | Chr5:94370003-94370022 | MsG0580029257.01.T01:intron | 45.0% | |
CCATCAAGATACTACATCGC+CGG | - | Chr5:94369627-94369646 | MsG0580029257.01.T01:intron | 45.0% | |
CCCGTGCAATTTGATTACAC+CGG | - | Chr5:94370066-94370085 | MsG0580029257.01.T01:intron | 45.0% | |
CCGGTGTAATCAAATTGCAC+GGG | + | Chr5:94370069-94370088 | None:intergenic | 45.0% | |
CGTGAAACACCCATTCTTCT+AGG | - | Chr5:94368566-94368585 | MsG0580029257.01.T01:CDS | 45.0% | |
CTTGTCTCACAACGTCCATA+GGG | + | Chr5:94368938-94368957 | None:intergenic | 45.0% | |
GAGATTTGGATCAAGGGTTC+AGG | - | Chr5:94370143-94370162 | MsG0580029257.01.T01:intron | 45.0% | |
GAGCACTTGTAAAGATCACC+AGG | + | Chr5:94369017-94369036 | None:intergenic | 45.0% | |
GCGATGTAGTATCTTGATGG+TGG | + | Chr5:94369627-94369646 | None:intergenic | 45.0% | |
GGATAAGCATCTCCTTCCTT+AGG | + | Chr5:94368530-94368549 | None:intergenic | 45.0% | |
GGGGTTAGACAAATCAGAAC+AGG | - | Chr5:94368347-94368366 | MsG0580029257.01.T01:intron | 45.0% | |
GTAATGTGAGTCGGTCATTG+TGG | - | Chr5:94370088-94370107 | MsG0580029257.01.T01:intron | 45.0% | |
GTGTAATCAAATTGCACGGG+AGG | + | Chr5:94370066-94370085 | None:intergenic | 45.0% | |
GTTCCTCATAGGTGGAAACA+AGG | + | Chr5:94370296-94370315 | None:intergenic | 45.0% | |
TACAAGCAACTCCAGTGAAG+AGG | - | Chr5:94367453-94367472 | MsG0580029257.01.T01:CDS | 45.0% | |
TCATCACCTTGTCCTGCAAA+GGG | - | Chr5:94369719-94369738 | MsG0580029257.01.T01:intron | 45.0% | |
TGGCTTAGAGCCACAGTTTA+TGG | - | Chr5:94368488-94368507 | MsG0580029257.01.T01:CDS | 45.0% | |
! | AAATTGCACGGGAGGTTTTG+TGG | + | Chr5:94370058-94370077 | None:intergenic | 45.0% |
! | CAATGACCGACTCACATTAC+CGG | + | Chr5:94370088-94370107 | None:intergenic | 45.0% |
! | CATTGTGGCAACCGATTCAA+GGG | - | Chr5:94370103-94370122 | MsG0580029257.01.T01:intron | 45.0% |
! | GACAAGAAGGTACACTTTGG+TGG | - | Chr5:94368450-94368469 | MsG0580029257.01.T01:intron | 45.0% |
! | GCAGGTAATGAAGGCATGAT+TGG | + | Chr5:94369761-94369780 | None:intergenic | 45.0% |
! | TCACGCTTTGGCTTAGTGAA+AGG | + | Chr5:94368551-94368570 | None:intergenic | 45.0% |
! | TCATTGTGGCAACCGATTCA+AGG | - | Chr5:94370102-94370121 | MsG0580029257.01.T01:intron | 45.0% |
!! | AATTGCACGGGAGGTTTTGT+GGG | + | Chr5:94370057-94370076 | None:intergenic | 45.0% |
ATATTTGCACCCCCCTTTGC+AGG | + | Chr5:94369734-94369753 | None:intergenic | 50.0% | |
ATCACCTTGTCCTGCAAAGG+GGG | - | Chr5:94369721-94369740 | MsG0580029257.01.T01:intron | 50.0% | |
CATCACCTTGTCCTGCAAAG+GGG | - | Chr5:94369720-94369739 | MsG0580029257.01.T01:intron | 50.0% | |
CCGGCGATGTAGTATCTTGA+TGG | + | Chr5:94369630-94369649 | None:intergenic | 50.0% | |
CTCCAAGTTTATGAGCCTGC+AGG | + | Chr5:94370008-94370027 | None:intergenic | 50.0% | |
GAAGTGAACCGTGTACCGTT+CGG | + | Chr5:94369940-94369959 | None:intergenic | 50.0% | |
GCAACAGTGTTCCTCATAGG+TGG | + | Chr5:94370304-94370323 | None:intergenic | 50.0% | |
GCTTGTCTCACAACGTCCAT+AGG | + | Chr5:94368939-94368958 | None:intergenic | 50.0% | |
GGTGGCATGCTCATAGTTCA+TGG | - | Chr5:94368468-94368487 | MsG0580029257.01.T01:intron | 50.0% | |
GTGAGACAAGCCACACAAAC+AGG | - | Chr5:94368948-94368967 | MsG0580029257.01.T01:CDS | 50.0% | |
! | ACGCAGCATTTTGAGCCGAT+TGG | + | Chr5:94369661-94369680 | None:intergenic | 50.0% |
! | AGAACATCAGTGGTTTGGCC+AGG | + | Chr5:94369588-94369607 | None:intergenic | 50.0% |
! | ATGGTGGGATGCAAACCCTA+TGG | - | Chr5:94368920-94368939 | MsG0580029257.01.T01:intron | 50.0% |
!! | ATCAGAACAGGATGGGCTGA+TGG | - | Chr5:94368359-94368378 | MsG0580029257.01.T01:intron | 50.0% |
!! | TTGATGGTGGTTGGTCACCT+TGG | + | Chr5:94369614-94369633 | None:intergenic | 50.0% |
GTCAAGGACCGAACGGTACA+CGG | - | Chr5:94369929-94369948 | MsG0580029257.01.T01:intron | 55.0% | |
GTGTTGCACAGCCTCTTCAC+TGG | + | Chr5:94367467-94367486 | None:intergenic | 55.0% | |
TCACCTTGTCCTGCAAAGGG+GGG | - | Chr5:94369722-94369741 | MsG0580029257.01.T01:intron | 55.0% | |
TGGAGCTGCTCCTGTTTGTG+TGG | + | Chr5:94368961-94368980 | None:intergenic | 55.0% | |
GAGCCGATTGGTAAGCGCGC+CGG | + | Chr5:94369649-94369668 | None:intergenic | 65.0% | |
GCACCCCCCTTTGCAGGACA+AGG | + | Chr5:94369728-94369747 | None:intergenic | 65.0% | |
TCGCCGGCGCGCTTACCAAT+CGG | - | Chr5:94369643-94369662 | MsG0580029257.01.T01:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 94367196 | 94370335 | 94367196 | ID=MsG0580029257.01;Name=MsG0580029257.01 |
Chr5 | mRNA | 94367196 | 94370335 | 94367196 | ID=MsG0580029257.01.T01;Parent=MsG0580029257.01;Name=MsG0580029257.01.T01;_AED=0.34;_eAED=0.34;_QI=126|0.25|0.6|1|1|1|5|0|259 |
Chr5 | exon | 94367196 | 94367519 | 94367196 | ID=MsG0580029257.01.T01:exon:49882;Parent=MsG0580029257.01.T01 |
Chr5 | exon | 94367588 | 94367640 | 94367588 | ID=MsG0580029257.01.T01:exon:49881;Parent=MsG0580029257.01.T01 |
Chr5 | exon | 94368487 | 94368615 | 94368487 | ID=MsG0580029257.01.T01:exon:49880;Parent=MsG0580029257.01.T01 |
Chr5 | exon | 94368944 | 94369188 | 94368944 | ID=MsG0580029257.01.T01:exon:49879;Parent=MsG0580029257.01.T01 |
Chr5 | exon | 94370181 | 94370335 | 94370181 | ID=MsG0580029257.01.T01:exon:49878;Parent=MsG0580029257.01.T01 |
Chr5 | five_prime_UTR | 94370210 | 94370335 | 94370210 | ID=MsG0580029257.01.T01:five_prime_utr;Parent=MsG0580029257.01.T01 |
Chr5 | CDS | 94370181 | 94370209 | 94370181 | ID=MsG0580029257.01.T01:cds;Parent=MsG0580029257.01.T01 |
Chr5 | CDS | 94368944 | 94369188 | 94368944 | ID=MsG0580029257.01.T01:cds;Parent=MsG0580029257.01.T01 |
Chr5 | CDS | 94368487 | 94368615 | 94368487 | ID=MsG0580029257.01.T01:cds;Parent=MsG0580029257.01.T01 |
Chr5 | CDS | 94367588 | 94367640 | 94367588 | ID=MsG0580029257.01.T01:cds;Parent=MsG0580029257.01.T01 |
Chr5 | CDS | 94367196 | 94367519 | 94367196 | ID=MsG0580029257.01.T01:cds;Parent=MsG0580029257.01.T01 |
Gene Sequence |
Protein sequence |