Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013212.01.T01 | XP_013459315.1 | 85.366 | 82 | 12 | 0 | 1 | 82 | 73 | 154 | 3.65E-44 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013212.01.T01 | P62927 | 57.377 | 61 | 25 | 1 | 1 | 60 | 66 | 126 | 2.96E-19 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013212.01.T01 | I3T793 | 85.366 | 82 | 12 | 0 | 1 | 82 | 73 | 154 | 1.75e-44 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049063.01 | MsG0380013212.01 | -0.807027 | 6.175376e-50 | 3.403095e-47 |
| MsG0080049078.01 | MsG0380013212.01 | -0.804832 | 1.788012e-49 | 9.313675e-47 |
| MsG0080049129.01 | MsG0380013212.01 | -0.810012 | 1.424185e-50 | 8.489985e-48 |
| MsG0180001079.01 | MsG0380013212.01 | 0.806778 | 6.973540e-50 | 3.818115e-47 |
| MsG0180001084.01 | MsG0380013212.01 | 0.807202 | 5.671210e-50 | 3.139500e-47 |
| MsG0180002255.01 | MsG0380013212.01 | 0.827585 | 1.442640e-54 | 1.398535e-51 |
| MsG0180004424.01 | MsG0380013212.01 | 0.875940 | 2.073238e-68 | 9.867154e-65 |
| MsG0180004662.01 | MsG0380013212.01 | -0.819241 | 1.288008e-52 | 9.857439e-50 |
| MsG0180005059.01 | MsG0380013212.01 | 0.842519 | 2.460733e-58 | 3.740648e-55 |
| MsG0180005060.01 | MsG0380013212.01 | 0.816089 | 6.619179e-52 | 4.645753e-49 |
| MsG0180005082.01 | MsG0380013212.01 | 0.833106 | 6.450113e-56 | 7.355484e-53 |
| MsG0180005130.01 | MsG0380013212.01 | 0.855958 | 4.446492e-62 | 1.044548e-58 |
| MsG0180005143.01 | MsG0380013212.01 | 0.857335 | 1.750555e-62 | 4.305752e-59 |
| MsG0280010569.01 | MsG0380013212.01 | -0.813425 | 2.576571e-51 | 1.682025e-48 |
| MsG0280010623.01 | MsG0380013212.01 | 0.833706 | 4.572675e-56 | 5.307991e-53 |
| MsG0280010926.01 | MsG0380013212.01 | -0.856236 | 3.687241e-62 | 8.740926e-59 |
| MsG0380013111.01 | MsG0380013212.01 | -0.814519 | 1.478033e-51 | 9.939813e-49 |
| MsG0380013212.01 | MsG0380013213.01 | 0.945509 | 2.670541e-104 | 4.110273e-99 |
| MsG0380013212.01 | MsG0380013214.01 | 0.898983 | 3.104642e-77 | 3.760170e-73 |
| MsG0380013212.01 | MsG0380013219.01 | 0.861406 | 1.049432e-63 | 2.966468e-60 |
| MsG0380013212.01 | MsG0380013226.01 | 0.892473 | 1.537012e-74 | 1.407694e-70 |
| MsG0380013212.01 | MsG0380013239.01 | 0.928516 | 2.584906e-92 | 1.368500e-87 |
| MsG0380013212.01 | MsG0380013530.01 | -0.818261 | 2.149267e-52 | 1.600895e-49 |
| MsG0380013212.01 | MsG0380013955.01 | -0.806032 | 1.001771e-49 | 5.381366e-47 |
| MsG0380013212.01 | MsG0380014272.01 | 0.801936 | 7.115771e-49 | 3.441302e-46 |
| MsG0380013212.01 | MsG0380014646.01 | -0.801745 | 7.790708e-49 | 3.749359e-46 |
| MsG0380013212.01 | MsG0380015496.01 | -0.815513 | 8.896661e-52 | 6.146664e-49 |
| MsG0380013212.01 | MsG0380015659.01 | 0.820580 | 6.363067e-53 | 5.054276e-50 |
| MsG0380013212.01 | MsG0380016194.01 | -0.807918 | 3.996484e-50 | 2.253914e-47 |
| MsG0380013212.01 | MsG0380016399.01 | -0.807572 | 4.734886e-50 | 2.646337e-47 |
| MsG0380013212.01 | MsG0380016452.01 | -0.802310 | 5.962171e-49 | 2.911203e-46 |
| MsG0380013212.01 | MsG0380016458.01 | 0.814946 | 1.188953e-51 | 8.087610e-49 |
| MsG0380013212.01 | MsG0380016459.01 | -0.822825 | 1.925609e-53 | 1.629632e-50 |
| MsG0380013212.01 | MsG0380016751.01 | -0.816644 | 4.972260e-52 | 3.543129e-49 |
| MsG0380013212.01 | MsG0380016836.01 | -0.816731 | 4.754049e-52 | 3.395701e-49 |
| MsG0380013212.01 | MsG0380017200.01 | 0.814853 | 1.246700e-51 | 8.459264e-49 |
| MsG0380013212.01 | MsG0380017739.01 | -0.803357 | 3.623374e-49 | 1.816948e-46 |
| MsG0380013212.01 | MsG0480018409.01 | 0.801476 | 8.842103e-49 | 4.226799e-46 |
| MsG0380013212.01 | MsG0480018439.01 | 0.810223 | 1.282338e-50 | 7.685759e-48 |
| MsG0380013212.01 | MsG0480018617.01 | 0.828983 | 6.638558e-55 | 6.703186e-52 |
| MsG0380013212.01 | MsG0480018621.01 | 0.814736 | 1.323302e-51 | 8.951024e-49 |
| MsG0380013212.01 | MsG0480018692.01 | 0.861579 | 9.293020e-64 | 2.642097e-60 |
| MsG0380013212.01 | MsG0480018693.01 | 0.854661 | 1.060632e-61 | 2.386308e-58 |
| MsG0380013212.01 | MsG0480018697.01 | 0.853586 | 2.166577e-61 | 4.704949e-58 |
| MsG0380013212.01 | MsG0480019322.01 | 0.808489 | 3.020742e-50 | 1.729504e-47 |
| MsG0380013212.01 | MsG0480019346.01 | 0.832833 | 7.543996e-56 | 8.531654e-53 |
| MsG0380013212.01 | MsG0480019348.01 | 0.803877 | 2.826141e-49 | 1.436397e-46 |
| MsG0380013212.01 | MsG0480019592.01 | -0.809549 | 1.790781e-50 | 1.054560e-47 |
| MsG0380013212.01 | MsG0480020285.01 | 0.825842 | 3.760686e-54 | 3.467714e-51 |
| MsG0380013212.01 | MsG0480020350.01 | -0.800360 | 1.494889e-48 | 6.947069e-46 |
| MsG0380013212.01 | MsG0480020408.01 | -0.805295 | 1.430376e-49 | 7.539658e-47 |
| MsG0380013212.01 | MsG0480020704.01 | -0.816104 | 6.568882e-52 | 4.612361e-49 |
| MsG0380013212.01 | MsG0480020755.01 | 0.801244 | 9.867272e-49 | 4.689368e-46 |
| MsG0380013212.01 | MsG0480021133.01 | 0.821980 | 3.024981e-53 | 2.498919e-50 |
| MsG0380013212.01 | MsG0480022646.01 | -0.820264 | 7.517252e-53 | 5.919446e-50 |
| MsG0380013212.01 | MsG0480023395.01 | -0.809583 | 1.761337e-50 | 1.038188e-47 |
| MsG0380013212.01 | MsG0480023429.01 | 0.810036 | 1.407007e-50 | 8.392871e-48 |
| MsG0380013212.01 | MsG0480023991.01 | -0.814755 | 1.310878e-51 | 8.871179e-49 |
| MsG0380013212.01 | MsG0580024567.01 | -0.828788 | 7.397775e-55 | 7.428134e-52 |
| MsG0380013212.01 | MsG0580024782.01 | 0.844335 | 8.058544e-59 | 1.296744e-55 |
| MsG0380013212.01 | MsG0580024994.01 | 0.802593 | 5.211257e-49 | 2.562900e-46 |
| MsG0380013212.01 | MsG0580025007.01 | 0.818694 | 1.714944e-52 | 1.292755e-49 |
| MsG0380013212.01 | MsG0580025024.01 | 0.850120 | 2.084727e-60 | 4.041148e-57 |
| MsG0380013212.01 | MsG0580025097.01 | -0.827606 | 1.425852e-54 | 1.383132e-51 |
| MsG0380013212.01 | MsG0580025193.01 | 0.817896 | 2.599719e-52 | 1.917135e-49 |
| MsG0380013212.01 | MsG0580025413.01 | -0.831421 | 1.685803e-55 | 1.828394e-52 |
| MsG0380013212.01 | MsG0580025965.01 | 0.800067 | 1.715173e-48 | 7.911447e-46 |
| MsG0380013212.01 | MsG0580026148.01 | 0.814966 | 1.177008e-51 | 8.010806e-49 |
| MsG0380013212.01 | MsG0580027098.01 | -0.823500 | 1.339357e-53 | 1.155313e-50 |
| MsG0380013212.01 | MsG0580027254.01 | -0.833265 | 5.888389e-56 | 6.746146e-53 |
| MsG0380013212.01 | MsG0580027458.01 | -0.816789 | 4.612977e-52 | 3.300301e-49 |
| MsG0380013212.01 | MsG0580027751.01 | 0.810978 | 8.809421e-51 | 5.387889e-48 |
| MsG0380013212.01 | MsG0580027752.01 | 0.823262 | 1.522549e-53 | 1.304435e-50 |
| MsG0380013212.01 | MsG0580027753.01 | 0.837278 | 5.711931e-57 | 7.382582e-54 |
| MsG0380013212.01 | MsG0580028495.01 | -0.805872 | 1.082119e-49 | 5.789381e-47 |
| MsG0380013212.01 | MsG0580028925.01 | -0.804935 | 1.701142e-49 | 8.884904e-47 |
| MsG0380013212.01 | MsG0580029682.01 | -0.814820 | 1.267741e-51 | 8.594530e-49 |
| MsG0380013212.01 | MsG0580029719.01 | -0.804779 | 1.833950e-49 | 9.539804e-47 |
| MsG0380013212.01 | MsG0580029937.01 | 0.803301 | 3.721076e-49 | 1.863292e-46 |
| MsG0380013212.01 | MsG0680030379.01 | 0.836634 | 8.343112e-57 | 1.057511e-53 |
| MsG0380013212.01 | MsG0680030380.01 | 0.800047 | 1.730712e-48 | 7.979066e-46 |
| MsG0380013212.01 | MsG0680030382.01 | 0.825957 | 3.530742e-54 | 3.266259e-51 |
| MsG0380013212.01 | MsG0680031200.01 | 0.804681 | 1.922056e-49 | 9.972702e-47 |
| MsG0380013212.01 | MsG0680032026.01 | 0.801126 | 1.042964e-48 | 4.941944e-46 |
| MsG0380013212.01 | MsG0680032461.01 | 0.821683 | 3.543941e-53 | 2.903149e-50 |
| MsG0380013212.01 | MsG0680032515.01 | -0.827134 | 1.850469e-54 | 1.770581e-51 |
| MsG0380013212.01 | MsG0680034391.01 | 0.807277 | 5.468613e-50 | 3.033278e-47 |
| MsG0380013212.01 | MsG0680034974.01 | 0.853648 | 2.080134e-61 | 4.525905e-58 |
| MsG0380013212.01 | MsG0680034978.01 | 0.815569 | 8.646314e-52 | 5.982675e-49 |
| MsG0380013212.01 | MsG0780035932.01 | 0.808641 | 2.803021e-50 | 1.611144e-47 |
| MsG0380013212.01 | MsG0780036259.01 | 0.803506 | 3.374807e-49 | 1.698941e-46 |
| MsG0380013212.01 | MsG0780036260.01 | 0.843975 | 1.006529e-58 | 1.601563e-55 |
| MsG0380013212.01 | MsG0780036376.01 | 0.835256 | 1.865849e-56 | 2.269419e-53 |
| MsG0380013212.01 | MsG0780036649.01 | 0.814647 | 1.384945e-51 | 9.345560e-49 |
| MsG0380013212.01 | MsG0780038307.01 | 0.822448 | 2.355822e-53 | 1.972496e-50 |
| MsG0380013212.01 | MsG0780038519.01 | 0.805566 | 1.254570e-49 | 6.659123e-47 |
| MsG0380013212.01 | MsG0780038653.01 | -0.809536 | 1.803103e-50 | 1.061419e-47 |
| MsG0380013212.01 | MsG0780038986.01 | -0.810665 | 1.029346e-50 | 6.242769e-48 |
| MsG0380013212.01 | MsG0780039686.01 | 0.826412 | 2.751621e-54 | 2.578742e-51 |
| MsG0380013212.01 | MsG0780039859.01 | -0.810213 | 1.289120e-50 | 7.724321e-48 |
| MsG0380013212.01 | MsG0780040670.01 | 0.823083 | 1.676333e-53 | 1.429103e-50 |
| MsG0380013212.01 | MsG0780041004.01 | -0.836468 | 9.196446e-57 | 1.160018e-53 |
| MsG0380013212.01 | MsG0780041447.01 | 0.804601 | 1.997766e-49 | 1.034374e-46 |
| MsG0380013212.01 | MsG0880042005.01 | -0.808518 | 2.977628e-50 | 1.706113e-47 |
| MsG0380013212.01 | MsG0880042006.01 | -0.808523 | 2.970842e-50 | 1.702458e-47 |
| MsG0380013212.01 | MsG0880042343.01 | -0.820134 | 8.054013e-53 | 6.319906e-50 |
| MsG0380013212.01 | MsG0880042642.01 | 0.842280 | 2.847728e-58 | 4.296299e-55 |
| MsG0380013212.01 | MsG0880042728.01 | 0.820007 | 8.610231e-53 | 6.732137e-50 |
| MsG0380013212.01 | MsG0880042876.01 | -0.813378 | 2.638793e-51 | 1.720498e-48 |
| MsG0380013212.01 | MsG0880043459.01 | 0.835243 | 1.879565e-56 | 2.285248e-53 |
| MsG0380013212.01 | MsG0880043530.01 | 0.808458 | 3.066558e-50 | 1.754386e-47 |
| MsG0380013212.01 | MsG0880043997.01 | 0.814017 | 1.908078e-51 | 1.265811e-48 |
| MsG0380013212.01 | MsG0880044026.01 | 0.803403 | 3.545236e-49 | 1.779996e-46 |
| MsG0380013212.01 | MsG0880044312.01 | -0.804739 | 1.869799e-49 | 9.716596e-47 |
| MsG0380013212.01 | MsG0880044314.01 | -0.811458 | 6.931645e-51 | 4.293090e-48 |
| MsG0380013212.01 | MsG0880044558.01 | -0.810911 | 9.109820e-51 | 5.561303e-48 |
| MsG0380013212.01 | MsG0880045283.01 | -0.815236 | 1.025413e-51 | 7.030147e-49 |
| MsG0380013212.01 | MsG0880045412.01 | -0.800534 | 1.377720e-48 | 6.430570e-46 |
| MsG0380013212.01 | MsG0880045854.01 | 0.819521 | 1.112135e-52 | 8.578078e-50 |
| MsG0380013212.01 | MsG0880046038.01 | 0.810366 | 1.194564e-50 | 7.186988e-48 |
| MsG0380013212.01 | MsG0880046166.01 | 0.864435 | 1.218274e-64 | 3.824932e-61 |
| MsG0380013212.01 | MsG0880046324.01 | -0.803342 | 3.648710e-49 | 1.829003e-46 |
| MsG0380013212.01 | MsG0880046403.01 | 0.826291 | 2.940279e-54 | 2.745925e-51 |
| MsG0380013212.01 | MsG0880046764.01 | -0.805220 | 1.483041e-49 | 7.802051e-47 |
| MsG0380013212.01 | MsG0880047312.01 | 0.815461 | 9.134833e-52 | 6.302358e-49 |
| MsG0380013212.01 | MsG0880047451.01 | -0.806271 | 8.921281e-50 | 4.821884e-47 |
| MsG0380013212.01 | MsG0880047460.01 | 0.837026 | 6.623994e-57 | 8.497003e-54 |
| MsG0380013212.01 | MsG0880047697.01 | 0.808717 | 2.699503e-50 | 1.554708e-47 |
| MsG0280007513.01 | MsG0380013212.01 | 0.819698 | 1.013295e-52 | 7.854318e-50 |
| MsG0280007670.01 | MsG0380013212.01 | 0.804919 | 1.714167e-49 | 8.949551e-47 |
| MsG0280007677.01 | MsG0380013212.01 | 0.844129 | 9.153401e-59 | 1.463525e-55 |
| MsG0280007689.01 | MsG0380013212.01 | 0.819822 | 9.491368e-53 | 7.382647e-50 |
| MsG0280007910.01 | MsG0380013212.01 | 0.803118 | 4.060550e-49 | 2.023747e-46 |
| MsG0280008178.01 | MsG0380013212.01 | 0.835083 | 2.062360e-56 | 2.495029e-53 |
| MsG0280008180.01 | MsG0380013212.01 | 0.826198 | 3.094378e-54 | 2.882279e-51 |
| MsG0280008227.01 | MsG0380013212.01 | -0.805729 | 1.159652e-49 | 6.181751e-47 |
| MsG0280008309.01 | MsG0380013212.01 | -0.812993 | 3.204430e-51 | 2.067548e-48 |
| MsG0280009253.01 | MsG0380013212.01 | 0.810672 | 1.025791e-50 | 6.222356e-48 |
| MsG0280009863.01 | MsG0380013212.01 | -0.807298 | 5.413457e-50 | 3.004269e-47 |
| MsG0280010425.01 | MsG0380013212.01 | 0.852934 | 3.332832e-61 | 7.078576e-58 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013212.01.T01 | MTR_3g436100 | 85.366 | 82 | 12 | 0 | 1 | 82 | 73 | 154 | 4.43e-48 | 149 |
| MsG0380013212.01.T01 | MTR_7g044920 | 63.855 | 83 | 29 | 1 | 1 | 82 | 70 | 152 | 6.24e-35 | 116 |
| MsG0380013212.01.T01 | MTR_7g044980 | 63.415 | 82 | 29 | 1 | 2 | 82 | 64 | 145 | 2.05e-33 | 112 |
| MsG0380013212.01.T01 | MTR_8g056800 | 54.321 | 81 | 37 | 0 | 2 | 82 | 21 | 101 | 5.74e-28 | 97.1 |
| MsG0380013212.01.T01 | MTR_6g017170 | 71.429 | 56 | 15 | 1 | 1 | 55 | 68 | 123 | 1.01e-24 | 89.7 |
| MsG0380013212.01.T01 | MTR_3g067437 | 66.102 | 59 | 20 | 0 | 2 | 60 | 69 | 127 | 2.31e-24 | 89.0 |
| MsG0380013212.01.T01 | MTR_8g022400 | 67.857 | 56 | 17 | 1 | 2 | 56 | 69 | 124 | 1.07e-23 | 87.8 |
| MsG0380013212.01.T01 | MTR_8g022420 | 62.500 | 64 | 23 | 1 | 2 | 64 | 68 | 131 | 3.78e-23 | 86.3 |
| MsG0380013212.01.T01 | MTR_8g022430 | 59.091 | 66 | 25 | 2 | 1 | 64 | 68 | 133 | 6.01e-23 | 85.5 |
| MsG0380013212.01.T01 | MTR_3g067500 | 56.452 | 62 | 27 | 0 | 1 | 62 | 46 | 107 | 3.07e-22 | 83.2 |
| MsG0380013212.01.T01 | MTR_6g017150 | 55.844 | 77 | 22 | 2 | 1 | 76 | 68 | 133 | 5.27e-22 | 83.2 |
| MsG0380013212.01.T01 | MTR_3g067580 | 55.385 | 65 | 28 | 1 | 2 | 65 | 77 | 141 | 5.90e-21 | 80.9 |
| MsG0380013212.01.T01 | MTR_3g467760 | 52.941 | 68 | 31 | 1 | 2 | 68 | 43 | 110 | 6.82e-21 | 79.7 |
| MsG0380013212.01.T01 | MTR_3g067540 | 49.351 | 77 | 28 | 1 | 2 | 78 | 73 | 138 | 8.25e-21 | 80.1 |
| MsG0380013212.01.T01 | MTR_3g067555 | 49.351 | 77 | 28 | 1 | 2 | 78 | 73 | 138 | 8.25e-21 | 80.1 |
| MsG0380013212.01.T01 | MTR_3g067555 | 49.351 | 77 | 28 | 1 | 2 | 78 | 60 | 125 | 9.62e-21 | 79.7 |
| MsG0380013212.01.T01 | MTR_3g067430 | 48.052 | 77 | 29 | 1 | 2 | 78 | 73 | 138 | 1.16e-20 | 79.7 |
| MsG0380013212.01.T01 | MTR_3g067550 | 49.351 | 77 | 28 | 1 | 2 | 78 | 52 | 117 | 1.17e-20 | 79.3 |
| MsG0380013212.01.T01 | MTR_3g067555 | 49.351 | 77 | 28 | 1 | 2 | 78 | 52 | 117 | 1.17e-20 | 79.3 |
| MsG0380013212.01.T01 | MTR_7g056803 | 57.377 | 61 | 25 | 1 | 5 | 64 | 74 | 134 | 1.28e-20 | 79.7 |
| MsG0380013212.01.T01 | MTR_3g067270 | 52.941 | 68 | 31 | 1 | 2 | 68 | 67 | 134 | 1.71e-20 | 79.3 |
| MsG0380013212.01.T01 | MTR_3g467750 | 52.941 | 68 | 31 | 1 | 2 | 68 | 67 | 134 | 1.71e-20 | 79.3 |
| MsG0380013212.01.T01 | MTR_7g056817 | 53.846 | 65 | 29 | 1 | 1 | 64 | 71 | 135 | 1.92e-20 | 79.3 |
| MsG0380013212.01.T01 | MTR_3g067280 | 52.941 | 68 | 31 | 1 | 2 | 68 | 67 | 134 | 2.08e-20 | 79.0 |
| MsG0380013212.01.T01 | MTR_3g463570 | 47.500 | 80 | 30 | 2 | 2 | 80 | 68 | 136 | 3.07e-20 | 78.6 |
| MsG0380013212.01.T01 | MTR_3g067570 | 67.391 | 46 | 15 | 0 | 2 | 47 | 45 | 90 | 1.01e-19 | 76.3 |
| MsG0380013212.01.T01 | MTR_3g463570 | 47.500 | 80 | 30 | 2 | 2 | 80 | 88 | 156 | 1.08e-19 | 77.8 |
| MsG0380013212.01.T01 | MTR_3g067535 | 53.247 | 77 | 23 | 2 | 2 | 78 | 71 | 134 | 1.18e-19 | 77.0 |
| MsG0380013212.01.T01 | MTR_4g026590 | 47.561 | 82 | 32 | 1 | 1 | 82 | 75 | 145 | 2.44e-19 | 76.6 |
| MsG0380013212.01.T01 | MTR_6g036620 | 47.436 | 78 | 30 | 1 | 1 | 78 | 66 | 132 | 6.38e-19 | 75.1 |
| MsG0380013212.01.T01 | MTR_6g047900 | 46.341 | 82 | 31 | 3 | 1 | 81 | 65 | 134 | 8.10e-19 | 75.1 |
| MsG0380013212.01.T01 | MTR_3g067510 | 67.391 | 46 | 15 | 0 | 2 | 47 | 75 | 120 | 1.02e-18 | 74.7 |
| MsG0380013212.01.T01 | MTR_3g067510 | 67.391 | 46 | 15 | 0 | 2 | 47 | 70 | 115 | 1.12e-18 | 74.3 |
| MsG0380013212.01.T01 | MTR_8g461020 | 47.945 | 73 | 27 | 2 | 1 | 72 | 67 | 129 | 5.74e-18 | 72.8 |
| MsG0380013212.01.T01 | MTR_6g047880 | 44.444 | 81 | 33 | 2 | 1 | 81 | 69 | 137 | 1.49e-17 | 71.6 |
| MsG0380013212.01.T01 | MTR_3g436120 | 82.500 | 40 | 7 | 0 | 43 | 82 | 62 | 101 | 1.43e-15 | 65.9 |
| MsG0380013212.01.T01 | MTR_1g019650 | 50.980 | 51 | 25 | 0 | 5 | 55 | 60 | 110 | 1.86e-15 | 65.9 |
| MsG0380013212.01.T01 | MTR_3g067445 | 55.556 | 45 | 20 | 0 | 2 | 46 | 73 | 117 | 2.06e-15 | 65.9 |
| MsG0380013212.01.T01 | MTR_7g029540 | 40.385 | 52 | 31 | 0 | 1 | 52 | 69 | 120 | 8.56e-12 | 56.6 |
| MsG0380013212.01.T01 | MTR_6g082060 | 62.500 | 40 | 15 | 0 | 19 | 58 | 91 | 130 | 2.31e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 14 sgRNAs with CRISPR-Local
Find 18 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATGCTGATATTGAATA+TGG | 0.285356 | 3:+32979093 | MsG0380013212.01.T01:CDS |
| AGACTACTTGAAGATGGCTT+TGG | 0.386657 | 3:+32979218 | MsG0380013212.01.T01:CDS |
| GCAGAACGTTACTTCAAGAT+TGG | 0.399752 | 3:+32979141 | MsG0380013212.01.T01:CDS |
| CGAGACATATCATTCTTAAG+TGG | 0.433054 | 3:-32979247 | None:intergenic |
| CCATATTCAATATCAGCATT+AGG | 0.437256 | 3:-32979093 | None:intergenic |
| GAGTGCATCAAGAAGGGAAG+TGG | 0.514496 | 3:+32979051 | MsG0380013212.01.T01:CDS |
| CGTTCTGCTTCATTTACAGA+GGG | 0.566815 | 3:-32979126 | None:intergenic |
| TCATGCGGAGTGCATCAAGA+AGG | 0.571938 | 3:+32979044 | MsG0380013212.01.T01:CDS |
| CATGCGGAGTGCATCAAGAA+GGG | 0.592268 | 3:+32979045 | MsG0380013212.01.T01:CDS |
| ACGTTCTGCTTCATTTACAG+AGG | 0.626101 | 3:-32979127 | None:intergenic |
| AGTGCATCAAGAAGGGAAGT+GGG | 0.636415 | 3:+32979052 | MsG0380013212.01.T01:CDS |
| ATGCTGATATTGAATATGGA+TGG | 0.639133 | 3:+32979097 | MsG0380013212.01.T01:CDS |
| TAACTTATGCAAAACTCATG+CGG | 0.658689 | 3:+32979029 | MsG0380013212.01.T01:CDS |
| ACATTATATGAAGATGATCG+AGG | 0.681516 | 3:+32978999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAGAAATTTTTTACTATA+GGG | - | Chr3:32979173-32979192 | None:intergenic | 15.0% |
| !!! | TTGAAGAAATTTTTTACTAT+AGG | - | Chr3:32979174-32979193 | None:intergenic | 15.0% |
| !!! | GAAATTTTTTACTATAGGGT+TGG | - | Chr3:32979169-32979188 | None:intergenic | 25.0% |
| ATGCTGATATTGAATATGGA+TGG | + | Chr3:32979097-32979116 | MsG0380013212.01.T01:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | - | Chr3:32979096-32979115 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | + | Chr3:32979093-32979112 | MsG0380013212.01.T01:CDS | 30.0% | |
| TAACTTATGCAAAACTCATG+CGG | + | Chr3:32979029-32979048 | MsG0380013212.01.T01:CDS | 30.0% | |
| TGAAAAAGACTACTTGAAGA+TGG | + | Chr3:32979212-32979231 | MsG0380013212.01.T01:CDS | 30.0% | |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | - | Chr3:32979202-32979221 | None:intergenic | 30.0% |
| ! | GCATGAGTTTTGCATAAGTT+AGG | - | Chr3:32979030-32979049 | None:intergenic | 35.0% |
| ACGTTCTGCTTCATTTACAG+AGG | - | Chr3:32979130-32979149 | None:intergenic | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | + | Chr3:32979218-32979237 | MsG0380013212.01.T01:CDS | 40.0% | |
| CGTTCTGCTTCATTTACAGA+GGG | - | Chr3:32979129-32979148 | None:intergenic | 40.0% | |
| GCAGAACGTTACTTCAAGAT+TGG | + | Chr3:32979141-32979160 | MsG0380013212.01.T01:CDS | 40.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | + | Chr3:32979052-32979071 | MsG0380013212.01.T01:CDS | 45.0% | |
| CATGCGGAGTGCATCAAGAA+GGG | + | Chr3:32979045-32979064 | MsG0380013212.01.T01:CDS | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | + | Chr3:32979051-32979070 | MsG0380013212.01.T01:CDS | 50.0% | |
| TCATGCGGAGTGCATCAAGA+AGG | + | Chr3:32979044-32979063 | MsG0380013212.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 32979006 | 32979254 | 32979006 | ID=MsG0380013212.01;Name=MsG0380013212.01 |
| Chr3 | mRNA | 32979006 | 32979254 | 32979006 | ID=MsG0380013212.01.T01;Parent=MsG0380013212.01;Name=MsG0380013212.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|82 |
| Chr3 | exon | 32979006 | 32979254 | 32979006 | ID=MsG0380013212.01.T01:exon:6273;Parent=MsG0380013212.01.T01 |
| Chr3 | CDS | 32979006 | 32979254 | 32979006 | ID=MsG0380013212.01.T01:cds;Parent=MsG0380013212.01.T01 |
| Gene Sequence |
| Protein sequence |
