AlfalfaGEDB | MsG0380013212.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013212.01

KEGG: -
GO: -
PFAM: PF16720

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013212.01.T01	XP_013459315.1	85.366	82	12	0	1	82	73	154	3.65E-44	149

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013212.01.T01	P62927	57.377	61	25	1	1	60	66	126	2.96E-19	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013212.01.T01	I3T793	85.366	82	12	0	1	82	73	154	1.75e-44	149

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049063.01	MsG0380013212.01	-0.807027	6.175376e-50	3.403095e-47
MsG0080049078.01	MsG0380013212.01	-0.804832	1.788012e-49	9.313675e-47
MsG0080049129.01	MsG0380013212.01	-0.810012	1.424185e-50	8.489985e-48
MsG0180001079.01	MsG0380013212.01	0.806778	6.973540e-50	3.818115e-47
MsG0180001084.01	MsG0380013212.01	0.807202	5.671210e-50	3.139500e-47
MsG0180002255.01	MsG0380013212.01	0.827585	1.442640e-54	1.398535e-51
MsG0180004424.01	MsG0380013212.01	0.875940	2.073238e-68	9.867154e-65
MsG0180004662.01	MsG0380013212.01	-0.819241	1.288008e-52	9.857439e-50
MsG0180005059.01	MsG0380013212.01	0.842519	2.460733e-58	3.740648e-55
MsG0180005060.01	MsG0380013212.01	0.816089	6.619179e-52	4.645753e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013212.01.T01	MTR_3g436100	85.366	82	12	0	1	82	73	154	4.43e-48	149
MsG0380013212.01.T01	MTR_7g044920	63.855	83	29	1	1	82	70	152	6.24e-35	116
MsG0380013212.01.T01	MTR_7g044980	63.415	82	29	1	2	82	64	145	2.05e-33	112
MsG0380013212.01.T01	MTR_8g056800	54.321	81	37	0	2	82	21	101	5.74e-28	97.1
MsG0380013212.01.T01	MTR_6g017170	71.429	56	15	1	1	55	68	123	1.01e-24	89.7
MsG0380013212.01.T01	MTR_3g067437	66.102	59	20	0	2	60	69	127	2.31e-24	89.0
MsG0380013212.01.T01	MTR_8g022400	67.857	56	17	1	2	56	69	124	1.07e-23	87.8
MsG0380013212.01.T01	MTR_8g022420	62.500	64	23	1	2	64	68	131	3.78e-23	86.3
MsG0380013212.01.T01	MTR_8g022430	59.091	66	25	2	1	64	68	133	6.01e-23	85.5
MsG0380013212.01.T01	MTR_3g067500	56.452	62	27	0	1	62	46	107	3.07e-22	83.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 14 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACATTATATGAAGATGATCG+AGG	0.681516	3:+32978999	None:intergenic
ACGTTCTGCTTCATTTACAG+AGG	0.626101	3:-32979127	None:intergenic
AGACTACTTGAAGATGGCTT+TGG	0.386657	3:+32979218	MsG0380013212.01.T01:CDS
AGTGCATCAAGAAGGGAAGT+GGG	0.636415	3:+32979052	MsG0380013212.01.T01:CDS
ATGCTGATATTGAATATGGA+TGG	0.639133	3:+32979097	MsG0380013212.01.T01:CDS
CATGCGGAGTGCATCAAGAA+GGG	0.592268	3:+32979045	MsG0380013212.01.T01:CDS
CCATATTCAATATCAGCATT+AGG	0.437256	3:-32979093	None:intergenic
CCTAATGCTGATATTGAATA+TGG	0.285356	3:+32979093	MsG0380013212.01.T01:CDS
CGAGACATATCATTCTTAAG+TGG	0.433054	3:-32979247	None:intergenic
CGTTCTGCTTCATTTACAGA+GGG	0.566815	3:-32979126	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCTGATATTGAATATGGA+TGG	+	Chr3:32979097-32979116	MsG0380013212.01.T01:CDS	30.0%
CCATATTCAATATCAGCATT+AGG	-	Chr3:32979096-32979115	None:intergenic	30.0%
CCTAATGCTGATATTGAATA+TGG	+	Chr3:32979093-32979112	MsG0380013212.01.T01:CDS	30.0%
TAACTTATGCAAAACTCATG+CGG	+	Chr3:32979029-32979048	MsG0380013212.01.T01:CDS	30.0%
TGAAAAAGACTACTTGAAGA+TGG	+	Chr3:32979212-32979231	MsG0380013212.01.T01:CDS	30.0%
ACGTTCTGCTTCATTTACAG+AGG	-	Chr3:32979130-32979149	None:intergenic	40.0%
AGACTACTTGAAGATGGCTT+TGG	+	Chr3:32979218-32979237	MsG0380013212.01.T01:CDS	40.0%
CGTTCTGCTTCATTTACAGA+GGG	-	Chr3:32979129-32979148	None:intergenic	40.0%
GCAGAACGTTACTTCAAGAT+TGG	+	Chr3:32979141-32979160	MsG0380013212.01.T01:CDS	40.0%
AGTGCATCAAGAAGGGAAGT+GGG	+	Chr3:32979052-32979071	MsG0380013212.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	32979006	32979254	32979006	ID=MsG0380013212.01;Name=MsG0380013212.01
Chr3	mRNA	32979006	32979254	32979006	ID=MsG0380013212.01.T01;Parent=MsG0380013212.01;Name=MsG0380013212.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|82
Chr3	exon	32979006	32979254	32979006	ID=MsG0380013212.01.T01:exon:6273;Parent=MsG0380013212.01.T01
Chr3	CDS	32979006	32979254	32979006	ID=MsG0380013212.01.T01:cds;Parent=MsG0380013212.01.T01

Gene Sequence	>MsG0380013212.01.T01 ATGAAGATGATCGAGGAACATCCTAACTTATGCAAAACTCATGCGGAGTGCATCAAGAAGGGAAGTGGGAACTTTTGTGCTCGTTATCCTAATGCTGATATTGAATATGGATGGTGTTTTCCCTCTGTAAATGAAGCAGAACGTTACTTCAAGATTGGATCCAACCCTATAGTAAAAAATTTCTTCAAGATTGCCTCAAACTCTAATGAAAAAGACTACTTGAAGATGGCTTTGGAAATTGCCACTTAA
Protein sequence	>MsG0380013212.01.T01 MKMIEEHPNLCKTHAECIKKGSGNFCARYPNADIEYGWCFPSVNEAERYFKIGSNPIVKNFFKIASNSNEKDYLKMALEIAT*