AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001079.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001079.01.T01 MTR_1g030268 79.714 350 48 4 1 349 4 331 0.0 545
MsG0180001079.01.T01 MTR_1g030275 77.364 349 57 3 1 349 4 330 0.0 540
MsG0180001079.01.T01 MTR_1g030268 81.957 327 57 2 1 326 4 329 0.0 536
MsG0180001079.01.T01 MTR_1g030230 78.510 349 51 3 1 349 1 325 0.0 536
MsG0180001079.01.T01 MTR_1g030265 84.191 272 23 2 84 355 53 304 1.33e-161 458
MsG0180001079.01.T01 MTR_1g030220 67.151 344 90 4 9 349 10 333 4.68e-161 458
MsG0180001079.01.T01 MTR_1g030340 59.026 349 122 3 9 356 15 343 1.30e-138 401
MsG0180001079.01.T01 MTR_7g087190 50.959 365 155 3 7 369 14 356 3.43e-127 372
MsG0180001079.01.T01 MTR_8g089805 51.117 358 153 3 12 367 16 353 7.24e-125 366
MsG0180001079.01.T01 MTR_7g033165 51.079 278 129 4 28 300 25 300 9.34e-93 281
MsG0180001079.01.T01 MTR_8g089805 50.000 286 121 3 84 367 20 285 9.40e-93 282
MsG0180001079.01.T01 MTR_7g033165 48.829 299 144 5 28 319 25 321 2.34e-92 283
MsG0180001079.01.T01 MTR_6g007090 40.282 355 174 6 1 347 4 328 7.38e-81 253
MsG0180001079.01.T01 MTR_7g113860 43.675 332 154 9 25 349 18 323 2.21e-76 242
MsG0180001079.01.T01 MTR_7g116870 39.420 345 177 7 10 349 7 324 2.16e-74 236
MsG0180001079.01.T01 MTR_7g113860 40.751 346 170 10 12 349 11 329 1.76e-73 234
MsG0180001079.01.T01 MTR_1g082390 41.399 343 168 10 12 348 7 322 4.08e-73 233
MsG0180001079.01.T01 MTR_8g038680 39.583 336 161 7 7 330 1 306 6.00e-71 228
MsG0180001079.01.T01 MTR_8g028160 38.244 353 188 6 1 343 1 333 1.37e-70 227
MsG0180001079.01.T01 MTR_7g033155 38.123 341 167 7 28 347 30 347 3.16e-69 224
MsG0180001079.01.T01 MTR_6g007100 39.815 324 160 7 28 347 25 317 4.35e-69 222
MsG0180001079.01.T01 MTR_8g012540 39.286 336 162 8 7 330 1 306 7.34e-69 221
MsG0180001079.01.T01 MTR_7g033150 37.883 359 179 9 7 347 1 333 1.50e-68 222
MsG0180001079.01.T01 MTR_6g007095 41.214 313 156 6 7 300 1 304 2.20e-68 229
MsG0180001079.01.T01 MTR_6g007095 42.007 269 141 4 44 306 378 637 2.46e-61 210
MsG0180001079.01.T01 MTR_7g111780 39.677 310 153 7 37 343 37 315 1.49e-65 213
MsG0180001079.01.T01 MTR_7g113860 41.241 274 129 8 82 349 8 255 3.29e-54 182
MsG0180001079.01.T01 MTR_1g030262 84.536 97 10 1 1 92 1 97 1.18e-49 163
MsG0180001079.01.T01 MTR_7g111780 36.327 245 124 5 100 343 3 216 1.70e-42 150
MsG0180001079.01.T01 MTR_2g015650 35.276 326 166 12 34 344 29 324 1.97e-42 153
MsG0180001079.01.T01 MTR_3g463930 33.127 323 185 10 34 344 42 345 2.46e-41 150
MsG0180001079.01.T01 MTR_3g463960 33.742 326 172 12 34 344 42 338 9.65e-41 149
MsG0180001079.01.T01 MTR_3g463950 33.742 326 172 12 34 344 42 338 9.65e-41 149
MsG0180001079.01.T01 MTR_3g463970 33.742 326 172 12 34 344 42 338 9.65e-41 149
MsG0180001079.01.T01 MTR_3g463940 33.742 326 172 12 34 344 42 338 9.65e-41 149
MsG0180001079.01.T01 MTR_2g015580 31.728 353 193 11 8 343 18 339 3.72e-40 147
MsG0180001079.01.T01 MTR_2g015590 33.033 333 184 8 24 343 18 324 1.29e-39 145
MsG0180001079.01.T01 MTR_2g015670 33.851 322 160 11 34 343 29 309 2.69e-39 144
MsG0180001079.01.T01 MTR_2g079090 32.039 309 172 10 34 332 28 308 2.13e-37 139
MsG0180001079.01.T01 MTR_2g079080 31.077 325 175 11 34 348 28 313 1.46e-36 137
MsG0180001079.01.T01 MTR_0029s0100 31.889 323 171 11 34 346 28 311 1.60e-36 137
MsG0180001079.01.T01 MTR_3g438030 32.817 323 176 11 34 344 28 321 2.92e-36 136
MsG0180001079.01.T01 MTR_3g448360 32.817 323 175 10 34 343 27 320 2.95e-36 136
MsG0180001079.01.T01 MTR_3g069780 32.508 323 177 11 34 344 28 321 3.20e-36 136
MsG0180001079.01.T01 MTR_0029s0050 31.579 323 172 11 34 346 28 311 4.23e-36 135
MsG0180001079.01.T01 MTR_2g015590 32.759 290 174 6 24 300 18 299 1.22e-34 131
MsG0180001079.01.T01 MTR_3g069520 32.907 313 174 9 34 337 28 313 3.85e-34 130
MsG0180001079.01.T01 MTR_2g043980 35.106 282 153 10 34 300 32 298 3.91e-34 130
MsG0180001079.01.T01 MTR_2g015630 30.028 353 198 9 8 343 5 325 3.78e-33 128
MsG0180001079.01.T01 MTR_4g104240 29.107 347 194 11 14 344 17 327 1.87e-32 126
MsG0180001079.01.T01 MTR_8g031430 31.056 322 177 9 36 352 37 318 1.04e-31 124
MsG0180001079.01.T01 MTR_4g056160 33.094 278 158 10 35 300 26 287 3.60e-30 119
MsG0180001079.01.T01 MTR_8g031390 29.846 325 182 10 36 355 37 320 1.20e-29 117
MsG0180001079.01.T01 MTR_8g031390 30.435 322 178 11 36 352 37 317 1.06e-28 115
MsG0180001079.01.T01 MTR_8g031420 28.923 325 186 9 33 352 32 316 1.15e-28 115
MsG0180001079.01.T01 MTR_1g082410 28.571 364 148 13 12 351 6 281 1.34e-28 114
MsG0180001079.01.T01 MTR_2g043990 33.003 303 148 13 15 299 72 337 4.24e-28 113
MsG0180001079.01.T01 MTR_8g031400 31.366 322 176 11 36 352 37 318 3.38e-27 111
MsG0180001079.01.T01 MTR_8g014910 32.014 278 160 10 35 300 31 291 1.18e-26 109
MsG0180001079.01.T01 MTR_8g022810 30.448 335 174 13 13 331 18 309 1.32e-25 107
MsG0180001079.01.T01 MTR_4g056280 29.412 306 179 11 12 300 4 289 7.08e-25 104
MsG0180001079.01.T01 MTR_3g082830 28.254 315 176 13 30 331 32 309 1.04e-24 104
MsG0180001079.01.T01 MTR_3g114090 29.618 314 174 11 31 332 31 309 1.25e-24 104
MsG0180001079.01.T01 MTR_5g084750 27.928 333 183 13 12 331 13 301 1.44e-24 103
MsG0180001079.01.T01 MTR_2g044100 28.834 326 185 12 36 352 43 330 1.97e-24 104
MsG0180001079.01.T01 MTR_1g025720 30.255 314 169 13 31 331 32 308 3.74e-24 102
MsG0180001079.01.T01 MTR_1g025680 30.100 299 180 10 15 300 12 294 7.49e-24 103
MsG0180001079.01.T01 MTR_8g087890 28.387 310 189 9 4 300 1 290 8.24e-24 102
MsG0180001079.01.T01 MTR_2g100620 31.295 278 162 12 35 300 30 290 8.39e-24 101
MsG0180001079.01.T01 MTR_2g033930 28.743 334 187 13 12 334 12 305 1.29e-23 101
MsG0180001079.01.T01 MTR_5g009100 28.525 305 173 11 38 331 48 318 1.31e-23 101
MsG0180001079.01.T01 MTR_0565s0010 27.108 332 197 9 10 331 8 304 1.35e-23 101
MsG0180001079.01.T01 MTR_1g025700 27.796 313 178 11 31 331 45 321 2.43e-23 100
MsG0180001079.01.T01 MTR_5g084770 29.355 310 178 13 10 300 1 288 3.41e-23 100
MsG0180001079.01.T01 MTR_5g074270 29.180 305 180 13 15 300 8 295 3.44e-23 100
MsG0180001079.01.T01 MTR_3g435540 28.743 334 202 14 15 334 5 316 1.23e-22 98.6
MsG0180001079.01.T01 MTR_3g464730 29.582 311 168 12 35 331 27 300 1.67e-22 98.2
MsG0180001079.01.T01 MTR_5g084790 28.387 310 172 11 35 331 31 303 2.37e-22 97.8
MsG0180001079.01.T01 MTR_3g024510 28.247 308 191 10 4 300 9 297 3.24e-22 97.4
MsG0180001079.01.T01 MTR_1g025760 27.393 303 184 13 15 300 57 340 2.26e-21 95.5
MsG0180001079.01.T01 MTR_1g025780 28.387 310 179 10 31 331 36 311 2.29e-21 95.1
MsG0180001079.01.T01 MTR_3g005650 27.517 298 189 9 10 300 8 285 3.04e-21 94.4
MsG0180001079.01.T01 MTR_8g022810 33.333 234 125 9 13 233 18 233 3.48e-21 94.0
MsG0180001079.01.T01 MTR_8g022790 30.263 304 170 8 36 331 37 306 1.03e-20 93.2
MsG0180001079.01.T01 MTR_3g114120 28.846 312 176 11 31 331 42 318 5.64e-20 90.9
MsG0180001079.01.T01 MTR_8g079050 25.723 346 205 12 26 354 28 338 7.36e-20 90.9
MsG0180001079.01.T01 MTR_8g012520 33.939 165 68 5 171 330 7 135 8.67e-20 85.5
MsG0180001079.01.T01 MTR_2g084585 28.339 307 176 11 35 331 29 301 8.78e-20 90.1
MsG0180001079.01.T01 MTR_0009s0250 28.283 297 181 9 12 300 12 284 1.25e-19 89.7
MsG0180001079.01.T01 MTR_3g005660 27.358 318 193 11 35 334 35 332 4.41e-19 88.6
MsG0180001079.01.T01 MTR_2g033920 28.777 278 170 9 36 301 35 296 4.77e-19 87.4
MsG0180001079.01.T01 MTR_1g025910 28.159 277 161 11 60 331 63 306 4.79e-19 88.2
MsG0180001079.01.T01 MTR_2g033920 28.929 280 171 9 36 303 35 298 5.92e-19 88.2
MsG0180001079.01.T01 MTR_5g022630 28.981 314 175 13 31 331 38 316 7.28e-19 87.8
MsG0180001079.01.T01 MTR_4g122200 27.385 325 187 10 33 345 32 319 8.55e-19 87.4
MsG0180001079.01.T01 MTR_7g116500 30.063 316 158 12 36 331 33 305 1.21e-18 87.0
MsG0180001079.01.T01 MTR_3g052480 28.435 313 188 12 35 330 32 325 2.53e-18 86.3
MsG0180001079.01.T01 MTR_5g078210 29.268 246 140 10 68 301 62 285 2.68e-18 85.5
MsG0180001079.01.T01 MTR_4g019880 26.801 347 194 13 4 331 1 306 3.41e-18 85.9
MsG0180001079.01.T01 MTR_3g098270 25.904 332 200 9 13 331 11 309 3.77e-18 85.9
MsG0180001079.01.T01 MTR_8g075220 27.586 290 178 11 30 303 34 307 3.86e-18 85.5
MsG0180001079.01.T01 MTR_5g078210 29.388 245 139 10 68 300 62 284 5.81e-18 85.1
MsG0180001079.01.T01 MTR_1g069175 29.607 331 173 14 36 348 33 321 8.62e-18 84.7
MsG0180001079.01.T01 MTR_7g116520 28.889 315 163 11 36 331 34 306 9.20e-18 84.7
MsG0180001079.01.T01 MTR_2g461580 25.602 332 200 8 15 333 7 304 9.22e-18 84.3
MsG0180001079.01.T01 MTR_2g015080 26.023 342 187 14 16 331 18 319 1.32e-17 84.0
MsG0180001079.01.T01 MTR_3g021460 28.014 282 178 7 35 306 30 296 2.23e-17 83.2
MsG0180001079.01.T01 MTR_5g022640 26.567 335 194 12 11 331 19 315 2.50e-17 83.2
MsG0180001079.01.T01 MTR_6g021530 26.765 340 190 12 11 331 3 302 4.58e-17 82.4
MsG0180001079.01.T01 MTR_4g087985 27.922 308 180 14 15 300 16 303 1.25e-16 81.3
MsG0180001079.01.T01 MTR_1g092750 25.321 312 181 8 31 335 35 301 3.66e-16 79.7
MsG0180001079.01.T01 MTR_5g083040 26.804 291 190 9 25 303 21 300 4.12e-16 79.7
MsG0180001079.01.T01 MTR_4g108690 27.010 311 194 12 38 334 29 320 5.68e-16 79.3
MsG0180001079.01.T01 MTR_8g087870 25.573 262 166 6 35 284 28 272 1.44e-15 77.8
MsG0180001079.01.T01 MTR_2g017955 24.262 305 207 8 4 299 1 290 1.58e-15 77.8
MsG0180001079.01.T01 MTR_2g017965 28.112 249 149 10 35 270 32 263 2.10e-15 77.4
MsG0180001079.01.T01 MTR_7g116570 26.282 312 175 10 36 331 34 306 2.72e-15 77.0
MsG0180001079.01.T01 MTR_1g092760 24.671 304 179 8 37 335 40 298 3.96e-15 76.6
MsG0180001079.01.T01 MTR_1g092690 25.993 277 176 8 28 303 43 291 1.48e-14 74.7
MsG0180001079.01.T01 MTR_2g017925 25.651 269 177 8 12 271 9 263 4.81e-14 73.6
MsG0180001079.01.T01 MTR_3g052580 27.300 337 188 16 35 354 27 323 6.16e-14 73.2
MsG0180001079.01.T01 MTR_3g052580 27.300 337 188 16 35 354 26 322 9.44e-14 72.8
MsG0180001079.01.T01 MTR_4g035353 23.588 301 194 9 15 299 10 290 1.23e-13 72.0
MsG0180001079.01.T01 MTR_8g075200 25.773 291 177 11 30 303 35 303 1.25e-13 72.4
MsG0180001079.01.T01 MTR_8g074560 24.281 313 190 11 8 296 4 293 1.44e-13 72.0
MsG0180001079.01.T01 MTR_7g104220 23.944 284 170 10 37 307 43 293 4.42e-13 70.5
MsG0180001079.01.T01 MTR_0127s0040 30.496 141 87 3 166 300 33 168 5.64e-13 68.6
MsG0180001079.01.T01 MTR_8g075230 26.384 307 184 11 7 300 18 295 1.10e-12 69.3
MsG0180001079.01.T01 MTR_3g023220 26.122 245 156 7 35 271 32 259 2.97e-12 67.8
MsG0180001079.01.T01 MTR_2g058390 44.444 63 35 0 168 230 7 69 5.13e-12 61.6
MsG0180001079.01.T01 MTR_1g092740 25.275 273 166 7 37 303 39 279 5.36e-12 67.0
MsG0180001079.01.T01 MTR_2g017875 25.822 213 139 6 35 237 33 236 7.83e-12 66.6
MsG0180001079.01.T01 MTR_8g074570 25.088 283 174 10 35 300 37 298 1.35e-11 65.9
MsG0180001079.01.T01 MTR_7g008060 24.852 338 190 11 6 331 7 292 1.51e-11 65.9
MsG0180001079.01.T01 MTR_1g060490 23.368 291 182 11 28 307 27 287 2.93e-11 64.7
MsG0180001079.01.T01 MTR_5g074210 36.264 91 54 2 211 300 64 151 5.92e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001079.01.T01 AT3G26430 49.858 351 154 3 9 357 4 334 1.36e-118 350
MsG0180001079.01.T01 AT1G67830 54.140 314 122 3 32 343 26 319 4.03e-117 346
MsG0180001079.01.T01 AT5G14450 43.714 350 154 7 15 352 20 338 1.81e-93 286
MsG0180001079.01.T01 AT3G27950 45.087 346 147 10 13 349 8 319 2.86e-81 254
MsG0180001079.01.T01 AT4G01130 39.306 346 180 8 14 353 12 333 5.47e-72 231
MsG0180001079.01.T01 AT1G54790 41.449 345 169 12 7 345 5 322 2.29e-71 229
MsG0180001079.01.T01 AT1G54790 41.108 343 183 11 16 345 11 347 2.35e-71 229
MsG0180001079.01.T01 AT1G54790 40.774 336 168 10 16 345 11 321 5.48e-70 225
MsG0180001079.01.T01 AT1G56670 40.356 337 168 8 10 343 16 322 5.57e-70 225
MsG0180001079.01.T01 AT1G09390 38.329 347 182 7 1 343 1 319 8.94e-70 224
MsG0180001079.01.T01 AT4G01130 41.781 292 160 6 14 300 12 298 1.85e-68 220
MsG0180001079.01.T01 AT3G05180 40.557 323 161 7 33 349 33 330 6.12e-67 217
MsG0180001079.01.T01 AT1G56670 41.297 293 159 6 10 300 16 297 1.10e-63 206
MsG0180001079.01.T01 AT3G62280 38.730 315 154 10 35 343 35 316 1.30e-54 185
MsG0180001079.01.T01 AT3G62280 39.852 271 144 8 35 300 35 291 3.73e-50 171
MsG0180001079.01.T01 AT1G28640 33.523 352 183 9 12 343 8 328 5.26e-46 163
MsG0180001079.01.T01 AT1G28590 33.058 363 193 8 1 345 1 331 1.13e-45 162
MsG0180001079.01.T01 AT1G28650 33.428 353 184 9 11 343 9 330 4.78e-45 160
MsG0180001079.01.T01 AT4G01130 35.424 271 145 8 89 353 1 247 2.10e-44 156
MsG0180001079.01.T01 AT1G28600 32.773 357 194 9 1 344 1 324 3.47e-44 158
MsG0180001079.01.T01 AT1G28670 34.195 348 187 9 12 343 8 329 4.50e-43 155
MsG0180001079.01.T01 AT1G28610 32.402 358 194 11 1 344 1 324 7.96e-43 154
MsG0180001079.01.T01 AT1G31550 32.500 360 198 9 1 345 1 330 1.17e-42 154
MsG0180001079.01.T01 AT1G28580 31.356 354 195 9 12 346 9 333 7.46e-42 152
MsG0180001079.01.T01 AT1G28660 31.921 354 185 11 12 343 8 327 1.12e-39 145
MsG0180001079.01.T01 AT1G31550 31.389 360 199 9 1 345 1 327 1.81e-39 145
MsG0180001079.01.T01 AT1G28660 32.394 355 183 12 12 343 8 328 3.45e-39 144
MsG0180001079.01.T01 AT2G27360 32.194 351 194 10 9 344 7 328 6.99e-39 144
MsG0180001079.01.T01 AT5G45910 32.000 350 191 10 12 343 8 328 1.53e-38 142
MsG0180001079.01.T01 AT1G28570 30.312 353 202 9 10 346 6 330 3.22e-37 139
MsG0180001079.01.T01 AT3G48460 27.429 350 200 11 13 344 15 328 1.40e-29 118
MsG0180001079.01.T01 AT1G28580 28.205 273 160 6 82 346 8 252 9.57e-26 106
MsG0180001079.01.T01 AT4G10950 27.532 316 199 11 35 337 70 368 7.91e-25 105
MsG0180001079.01.T01 AT2G04570 27.666 347 200 15 7 342 1 307 1.18e-24 104
MsG0180001079.01.T01 AT5G40990 28.649 370 201 13 36 380 37 368 2.06e-24 103
MsG0180001079.01.T01 AT5G08460 28.435 313 175 10 34 331 47 325 3.52e-24 103
MsG0180001079.01.T01 AT3G16370 30.945 307 168 11 35 331 29 301 3.92e-24 102
MsG0180001079.01.T01 AT2G42990 28.614 339 198 16 14 334 9 321 5.00e-24 102
MsG0180001079.01.T01 AT5G63170 29.836 305 177 12 11 300 3 285 5.28e-24 102
MsG0180001079.01.T01 AT5G45670 26.519 362 215 11 1 351 1 322 1.41e-23 101
MsG0180001079.01.T01 AT1G53940 28.358 402 221 13 11 380 4 370 2.31e-23 100
MsG0180001079.01.T01 AT5G15720 27.517 298 191 9 35 320 29 313 3.64e-23 99.4
MsG0180001079.01.T01 AT2G23540 28.049 328 173 13 30 334 42 329 5.90e-23 99.8
MsG0180001079.01.T01 AT4G18970 26.144 306 185 7 35 331 27 300 9.38e-23 99.0
MsG0180001079.01.T01 AT4G10950 27.215 316 196 12 35 337 70 364 1.10e-22 99.4
MsG0180001079.01.T01 AT1G59406 26.946 334 199 10 7 331 1 298 1.11e-22 98.6
MsG0180001079.01.T01 AT1G59030 26.946 334 199 10 7 331 1 298 1.11e-22 98.6
MsG0180001079.01.T01 AT1G58725 26.946 334 199 10 7 331 1 298 1.11e-22 98.6
MsG0180001079.01.T01 AT3G43550 28.136 295 186 9 16 301 10 287 1.13e-22 97.4
MsG0180001079.01.T01 AT4G18970 26.144 306 185 7 35 331 27 300 1.13e-22 99.4
MsG0180001079.01.T01 AT1G20120 31.095 283 168 12 29 300 71 337 1.20e-22 99.4
MsG0180001079.01.T01 AT4G26790 28.115 313 171 13 34 331 27 300 1.30e-22 98.6
MsG0180001079.01.T01 AT4G26790 28.115 313 171 13 34 331 27 300 1.30e-22 98.6
MsG0180001079.01.T01 AT1G75900 27.597 308 178 11 35 332 42 314 1.81e-22 98.2
MsG0180001079.01.T01 AT1G29670 25.444 338 208 10 4 331 67 370 2.27e-22 98.6
MsG0180001079.01.T01 AT1G75930 28.852 305 178 10 28 309 21 309 5.29e-22 96.7
MsG0180001079.01.T01 AT1G53940 30.645 310 179 9 11 300 4 297 6.27e-22 95.5
MsG0180001079.01.T01 AT1G29670 26.073 303 199 9 8 300 3 290 7.82e-22 96.3
MsG0180001079.01.T01 AT5G15720 26.384 307 185 8 35 331 29 304 1.08e-21 95.9
MsG0180001079.01.T01 AT1G29660 26.765 340 202 11 6 333 4 308 1.28e-21 95.9
MsG0180001079.01.T01 AT1G71691 26.923 286 185 8 24 300 41 311 1.85e-21 94.4
MsG0180001079.01.T01 AT1G20130 28.904 301 184 10 30 314 198 484 1.90e-21 96.7
MsG0180001079.01.T01 AT1G06990 28.214 280 172 10 34 300 35 298 1.98e-21 95.1
MsG0180001079.01.T01 AT1G20130 28.395 324 196 11 30 334 178 484 3.21e-21 95.9
MsG0180001079.01.T01 AT1G71691 26.923 286 185 8 24 300 41 311 3.37e-21 94.7
MsG0180001079.01.T01 AT1G53920 25.549 364 217 10 4 351 7 332 3.68e-21 94.7
MsG0180001079.01.T01 AT5G42170 27.097 310 181 11 31 331 45 318 4.76e-21 94.4
MsG0180001079.01.T01 AT5G45950 28.000 275 169 10 36 300 40 295 5.05e-21 94.0
MsG0180001079.01.T01 AT1G58430 27.157 313 177 10 34 331 33 309 5.38e-21 94.0
MsG0180001079.01.T01 AT1G73610 29.286 280 170 9 31 300 30 291 5.95e-21 93.6
MsG0180001079.01.T01 AT2G24560 30.619 307 170 14 28 313 26 310 8.03e-21 92.8
MsG0180001079.01.T01 AT1G23500 30.097 309 181 14 9 300 2 292 8.68e-21 93.2
MsG0180001079.01.T01 AT1G71120 26.708 322 181 9 23 331 18 297 1.05e-20 93.2
MsG0180001079.01.T01 AT1G58520 27.957 279 175 9 31 300 25 286 2.07e-20 92.0
MsG0180001079.01.T01 AT1G58525 27.957 279 175 9 31 300 25 286 2.07e-20 92.0
MsG0180001079.01.T01 AT3G14225 31.613 310 159 12 36 331 37 307 2.12e-20 92.4
MsG0180001079.01.T01 AT1G20132 27.331 311 174 12 35 331 60 332 3.31e-20 92.0
MsG0180001079.01.T01 AT1G28600 34.091 220 119 8 1 210 1 204 5.06e-20 88.6
MsG0180001079.01.T01 AT2G24560 29.321 324 168 14 28 331 26 308 7.76e-20 90.5
MsG0180001079.01.T01 AT1G28610 34.272 213 114 8 1 203 1 197 8.52e-20 88.6
MsG0180001079.01.T01 AT2G31540 28.669 293 167 12 28 300 27 297 8.85e-20 90.5
MsG0180001079.01.T01 AT3G14225 31.511 311 162 13 36 331 37 311 1.02e-19 90.5
MsG0180001079.01.T01 AT1G33811 25.816 337 209 10 7 331 4 311 1.44e-19 89.7
MsG0180001079.01.T01 AT1G75880 26.923 364 202 15 15 360 26 343 1.76e-19 89.7
MsG0180001079.01.T01 AT1G75880 26.923 364 203 14 15 360 26 344 1.93e-19 89.7
MsG0180001079.01.T01 AT2G30220 28.369 282 170 11 34 300 31 295 1.98e-19 89.4
MsG0180001079.01.T01 AT5G03820 26.688 311 178 11 35 331 32 306 2.08e-19 89.4
MsG0180001079.01.T01 AT2G03980 28.571 266 158 10 33 287 40 284 2.19e-19 89.4
MsG0180001079.01.T01 AT2G03980 28.571 266 158 10 33 287 40 284 2.19e-19 89.4
MsG0180001079.01.T01 AT2G03980 28.571 266 158 10 33 287 40 284 2.19e-19 89.4
MsG0180001079.01.T01 AT2G03980 28.571 266 158 10 33 287 40 284 2.19e-19 89.4
MsG0180001079.01.T01 AT5G03820 26.688 311 178 11 35 331 60 334 2.32e-19 89.4
MsG0180001079.01.T01 AT5G22810 28.065 310 176 11 35 331 33 308 2.42e-19 89.0
MsG0180001079.01.T01 AT2G30310 28.213 319 194 12 28 330 26 325 2.79e-19 89.0
MsG0180001079.01.T01 AT5G45960 26.299 308 184 13 36 331 47 323 3.04e-19 89.0
MsG0180001079.01.T01 AT2G04020 31.390 223 133 8 33 247 40 250 3.41e-19 87.0
MsG0180001079.01.T01 AT2G19050 28.517 263 156 8 35 287 30 270 5.31e-19 87.0
MsG0180001079.01.T01 AT2G19050 28.517 263 156 8 35 287 30 270 7.23e-19 87.4
MsG0180001079.01.T01 AT2G04020 32.075 212 125 7 33 237 40 239 9.01e-19 87.0
MsG0180001079.01.T01 AT2G40250 25.243 309 186 11 36 331 36 312 1.69e-18 86.7
MsG0180001079.01.T01 AT1G75890 26.888 331 190 13 17 331 25 319 2.65e-18 86.3
MsG0180001079.01.T01 AT1G75890 26.888 331 190 13 17 331 54 348 2.91e-18 86.3
MsG0180001079.01.T01 AT3G53100 27.003 337 197 13 7 331 1 300 7.15e-18 84.7
MsG0180001079.01.T01 AT5G03810 25.882 255 154 9 60 300 57 290 8.63e-18 84.3
MsG0180001079.01.T01 AT1G20135 26.645 304 185 10 13 300 6 287 9.86e-18 84.0
MsG0180001079.01.T01 AT1G54020 25.298 336 192 10 15 343 12 295 2.57e-17 83.2
MsG0180001079.01.T01 AT2G19060 27.974 311 173 12 35 330 29 303 3.54e-17 82.8
MsG0180001079.01.T01 AT1G75890 26.176 340 194 13 17 331 25 332 3.76e-17 82.8
MsG0180001079.01.T01 AT1G53990 27.520 367 202 13 36 380 35 359 4.01e-17 82.8
MsG0180001079.01.T01 AT1G54000 25.000 340 199 11 12 343 12 303 5.06e-17 82.4
MsG0180001079.01.T01 AT2G19010 26.718 262 162 7 35 287 59 299 5.17e-17 82.4
MsG0180001079.01.T01 AT2G19010 26.718 262 162 7 35 287 29 269 5.35e-17 82.0
MsG0180001079.01.T01 AT5G03980 25.298 336 169 13 13 337 7 271 6.08e-17 81.6
MsG0180001079.01.T01 AT1G71250 24.839 310 204 10 3 300 9 301 6.39e-17 82.0
MsG0180001079.01.T01 AT3G14820 25.490 306 182 9 35 331 31 299 1.60e-16 80.9
MsG0180001079.01.T01 AT1G54030 27.178 287 151 8 60 340 80 314 1.80e-16 81.3
MsG0180001079.01.T01 AT1G74460 28.662 314 185 14 38 334 25 316 3.09e-16 80.1
MsG0180001079.01.T01 AT1G54030 27.711 249 141 7 60 302 80 295 4.96e-16 79.0
MsG0180001079.01.T01 AT3G50400 27.178 287 168 12 36 300 34 301 7.06e-16 79.0
MsG0180001079.01.T01 AT5G33370 27.273 319 163 13 36 331 30 302 8.03e-16 79.0
MsG0180001079.01.T01 AT1G75920 25.872 344 209 13 6 334 2 314 1.16e-15 78.2
MsG0180001079.01.T01 AT1G54010 26.712 292 177 10 8 287 4 270 1.48e-15 78.2
MsG0180001079.01.T01 AT4G28780 26.935 323 178 11 36 342 31 311 1.68e-15 77.8
MsG0180001079.01.T01 AT1G28570 23.894 226 128 3 125 346 73 258 2.58e-15 76.6
MsG0180001079.01.T01 AT1G28570 26.286 175 107 2 176 346 11 167 5.82e-15 74.3
MsG0180001079.01.T01 AT5G37690 25.974 308 189 11 10 300 1 286 6.10e-15 75.9
MsG0180001079.01.T01 AT5G15720 24.000 275 170 7 62 331 33 273 6.72e-15 75.9
MsG0180001079.01.T01 AT3G04290 27.987 318 162 13 36 331 29 301 7.24e-15 75.9
MsG0180001079.01.T01 AT5G33370 27.778 288 158 12 36 300 30 290 9.59e-15 75.1
MsG0180001079.01.T01 AT4G30140 28.253 269 160 8 35 293 32 277 5.94e-14 73.2
MsG0180001079.01.T01 AT5G03610 25.574 305 180 11 37 335 44 307 1.49e-13 72.0
MsG0180001079.01.T01 AT5G18430 24.484 339 196 11 10 331 7 302 1.67e-13 71.6
MsG0180001079.01.T01 AT3G09930 24.715 263 170 8 37 295 40 278 3.34e-13 70.9
MsG0180001079.01.T01 AT3G09930 24.715 263 170 8 37 295 40 278 3.34e-13 70.9
MsG0180001079.01.T01 AT1G75920 25.074 339 196 13 26 334 14 324 2.08e-12 68.6
MsG0180001079.01.T01 AT5G55050 28.125 320 165 14 35 331 38 315 1.18e-11 66.2
MsG0180001079.01.T01 AT5G41890 24.920 313 184 14 38 327 33 317 2.48e-11 65.1
MsG0180001079.01.T01 AT2G31550 31.373 102 65 3 201 300 58 156 6.63e-11 62.4

Find 78 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTACCATTTATGTTTA+TGG 0.138517 1:-15705073 None:intergenic
TGGATGTGTACCTTTAATTT+TGG 0.167825 1:+15704605 MsG0180001079.01.T01:CDS
CAATTCTTTGTAGCAAATAT+TGG 0.178924 1:-15699907 None:intergenic
CAAGTTAGGGTATATATATT+TGG 0.201468 1:+15704845 MsG0180001079.01.T01:CDS
TATAAAATTCTTTACTATAT+CGG 0.215235 1:-15704345 None:intergenic
ACCAATATCAAATGTGTATA+AGG 0.220968 1:-15704258 None:intergenic
ATTTAGGGGCAAGGTCATTT+TGG 0.232450 1:+15704562 MsG0180001079.01.T01:CDS
TATTGAATTTGAAGAGAAAA+TGG 0.242470 1:-15707332 None:intergenic
CCTTTAGGTAGAATAATAAT+AGG 0.244975 1:-15707299 None:intergenic
TTTGGAATAATAATCTTCTT+TGG 0.255011 1:-15704234 None:intergenic
ATCTAGAACATATACAATTT+AGG 0.266079 1:+15704546 MsG0180001079.01.T01:intron
AAAAGGCTTAATTGCACTTT+TGG 0.266349 1:+15707385 MsG0180001079.01.T01:CDS
TACTGAACCTGAAGGGAAAA+TGG 0.271054 1:-15704015 None:intergenic
AATTCTTTGTAGCAAATATT+GGG 0.277876 1:-15699906 None:intergenic
GGAAAATTGGCCAAAATTAA+AGG 0.278464 1:-15704615 None:intergenic
CTTTATAGCAGATGGAAAAT+TGG 0.280511 1:-15704628 None:intergenic
TTGGAATAATAATCTTCTTT+GGG 0.286703 1:-15704233 None:intergenic
ATATACCCTAACTTGAAAAT+AGG 0.289886 1:-15704837 None:intergenic
CGATCATATCATAATTTCAT+AGG 0.294317 1:+15699786 None:intergenic
CGAATCATTCTTGATTTCAT+AGG 0.296923 1:+15700063 MsG0180001079.01.T01:CDS
GTGCTTCATCATAAAATTCA+TGG 0.303697 1:+15699816 MsG0180001079.01.T01:exon
GCCTTATACACATTTGATAT+TGG 0.309552 1:+15704257 MsG0180001079.01.T01:CDS
AAAATAGGATCAATTTGATT+TGG 0.311486 1:-15704822 None:intergenic
TACCTAAAACAAGGTTCATT+AGG 0.312574 1:+15704058 MsG0180001079.01.T01:CDS
AGTGCATATCTTGATTCTCT+TGG 0.329038 1:+15703901 MsG0180001079.01.T01:CDS
TCTAGAACATATACAATTTA+GGG 0.329938 1:+15704547 MsG0180001079.01.T01:intron
AATGGACTGATTATTCCTTT+AGG 0.332207 1:-15707314 None:intergenic
GGAGCAACCATAAACATAAA+TGG 0.333844 1:+15705066 MsG0180001079.01.T01:CDS
ATCAAGATATGCACTTAGAT+AGG 0.372608 1:-15703893 None:intergenic
ATCAAATGTGTATAAGGCTT+TGG 0.373582 1:-15704252 None:intergenic
ATAAAATTCTTTACTATATC+GGG 0.374442 1:-15704344 None:intergenic
AAACTCTGATACTGGTGGTT+TGG 0.401156 1:+15699963 MsG0180001079.01.T01:CDS
CGAGCACTGCCGTTACCATA+TGG 0.418623 1:+15699997 MsG0180001079.01.T01:CDS
ACCTAAAACAAGGTTCATTA+GGG 0.418975 1:+15704059 MsG0180001079.01.T01:CDS
ATACATAACACTGGACCAAT+TGG 0.419424 1:+15704585 MsG0180001079.01.T01:CDS
CTTTAGGTAGAATAATAATA+GGG 0.430128 1:-15707298 None:intergenic
CCTATTATTATTCTACCTAA+AGG 0.433489 1:+15707299 MsG0180001079.01.T01:CDS
ATATTTCAATTTAAAGTTGA+AGG 0.433727 1:+15704692 MsG0180001079.01.T01:CDS
GTGCATATCTTGATTCTCTT+GGG 0.440070 1:+15703902 MsG0180001079.01.T01:CDS
GGTCAAAATGATCTTACTGC+TGG 0.466959 1:+15704278 MsG0180001079.01.T01:CDS
ATTAAAGGTACACATCCAAT+TGG 0.476146 1:-15704600 None:intergenic
AAGCCCTAGCTCATCTTCGC+AGG 0.481072 1:+15704715 MsG0180001079.01.T01:CDS
GGTGCTTCAAACTCTGATAC+TGG 0.485062 1:+15699955 MsG0180001079.01.T01:CDS
TACAACTATAACATTAGTGC+TGG 0.500660 1:+15705039 MsG0180001079.01.T01:CDS
CTAGGTATGATATTACTAGT+AGG 0.500699 1:-15703979 None:intergenic
GGTGCAAACTTTGCAACAGC+AGG 0.502492 1:+15703940 MsG0180001079.01.T01:CDS
TAACTATCCTTTATAGCAGA+TGG 0.504462 1:-15704636 None:intergenic
GATTTCATATCGAAAACAAA+AGG 0.508046 1:+15707368 MsG0180001079.01.T01:CDS
CTAGTGGCTTGTTGTGGCAA+TGG 0.508528 1:+15705009 MsG0180001079.01.T01:CDS
GATCCCTGCGAAGATGAGCT+AGG 0.520958 1:-15704719 None:intergenic
TCTGCTATAAAGGATAGTTA+TGG 0.535982 1:+15704639 MsG0180001079.01.T01:CDS
TATAACATTAGTGCTGGCTG+TGG 0.541420 1:+15705045 MsG0180001079.01.T01:CDS
TCAAGATATGCACTTAGATA+GGG 0.543210 1:-15703892 None:intergenic
ATTCTTTGTAGCAAATATTG+GGG 0.543366 1:-15699905 None:intergenic
TGGTAACGGCAGTGCTCGAA+AGG 0.543397 1:-15699992 None:intergenic
AATAATAGGGATAGAACAGA+TGG 0.550117 1:-15707285 None:intergenic
TGGAATAATAATCTTCTTTG+GGG 0.555591 1:-15704232 None:intergenic
CTTGGGTCAAACTTCACACA+TGG 0.560034 1:+15703919 MsG0180001079.01.T01:CDS
GGGTATATATATTTGGATTG+CGG 0.560066 1:+15704852 MsG0180001079.01.T01:CDS
ACATATACAATTTAGGGGCA+AGG 0.581070 1:+15704553 MsG0180001079.01.T01:CDS
AGGGTTTGAACTTCCACTAG+TGG 0.582113 1:+15704993 MsG0180001079.01.T01:intron
ATCCCTGCGAAGATGAGCTA+GGG 0.588235 1:-15704718 None:intergenic
CTTCCACTAGTGGCTTGTTG+TGG 0.588534 1:+15705003 MsG0180001079.01.T01:CDS
ACATATGTGATTGCTGCTAG+TGG 0.594418 1:-15704744 None:intergenic
AAAGTCTCACCATATGGTAA+CGG 0.600481 1:-15700006 None:intergenic
TTGCCACAACAAGCCACTAG+TGG 0.603337 1:-15705006 None:intergenic
AAGATTTCATACCTAAAACA+AGG 0.612054 1:+15704049 MsG0180001079.01.T01:CDS
AGCCCTAGCTCATCTTCGCA+GGG 0.617389 1:+15704716 MsG0180001079.01.T01:CDS
ACAAGGTTCATTAGGGACCA+AGG 0.627469 1:+15704066 MsG0180001079.01.T01:CDS
GTGCAAACTTTGCAACAGCA+GGG 0.631688 1:+15703941 MsG0180001079.01.T01:CDS
GCTTCAAACTCTGATACTGG+TGG 0.645496 1:+15699958 MsG0180001079.01.T01:CDS
TTCTTTGTAGCAAATATTGG+GGG 0.645637 1:-15699904 None:intergenic
ACTAGTAATATCATACCTAG+TGG 0.650422 1:+15703982 MsG0180001079.01.T01:CDS
AATGGACTAAACATTCCACT+AGG 0.660611 1:-15703997 None:intergenic
TTGAATGTACTGAACCTGAA+GGG 0.661770 1:-15704022 None:intergenic
GTGGCTTGTTGTGGCAATGG+AGG 0.663762 1:+15705012 MsG0180001079.01.T01:CDS
ATTGAATGTACTGAACCTGA+AGG 0.669376 1:-15704023 None:intergenic
CTAGAACATATACAATTTAG+GGG 0.696032 1:+15704548 MsG0180001079.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTAAAAATAATA+AGG - Chr1:15701854-15701873 None:intergenic 0.0%
!! AGTAATATATATATATAACA+AGG - Chr1:15704507-15704526 None:intergenic 10.0%
!! ATTAATAAATAAGGATAATA+TGG - Chr1:15702197-15702216 None:intergenic 10.0%
!! CCTAATAAAATTAATAAATA+AGG + Chr1:15703128-15703147 MsG0180001079.01.T01:intron 10.0%
!! CCTAATAAAATTAATAAATA+AGG - Chr1:15703147-15703128 None:intergenic 10.0%
!! GTAATATATATATATAACAA+GGG - Chr1:15704506-15704525 None:intergenic 10.0%
!! TAAAAAGTGAAAAAATATTT+GGG - Chr1:15707163-15707182 None:intergenic 10.0%
!! TATAAAATTCTTTACTATAT+CGG - Chr1:15704348-15704367 None:intergenic 10.0%
!! TATATCTATACTATATATAA+AGG + Chr1:15701087-15701106 MsG0180001079.01.T01:intron 10.0%
!! TTAAAATGAATTTAAATATG+AGG - Chr1:15703610-15703629 None:intergenic 10.0%
!! TTTAATAAATGGTTTAAAAA+TGG + Chr1:15701826-15701845 MsG0180001079.01.T01:intron 10.0%
!!! AAAACAATAATTTTTTGAAA+GGG + Chr1:15705771-15705790 MsG0180001079.01.T01:intron 10.0%
!!! AATTATTTCTATATTTATGA+AGG + Chr1:15703820-15703839 MsG0180001079.01.T01:intron 10.0%
!!! ATTATTTCTATATTTATGAA+GGG + Chr1:15703821-15703840 MsG0180001079.01.T01:intron 10.0%
!!! CCTTATTTATTAATTTTATT+AGG + Chr1:15702203-15702222 MsG0180001079.01.T01:intron 10.0%
!!! CCTTATTTATTAATTTTATT+AGG - Chr1:15702222-15702203 None:intergenic 10.0%
!!! TATAAGAGTATTAATTAATT+CGG + Chr1:15701786-15701805 MsG0180001079.01.T01:intron 10.0%
!!! TTACTTGTATTTAAAATTAA+GGG - Chr1:15701164-15701183 None:intergenic 10.0%
!!! TTAGGTTTATTAATTTTATT+AGG - Chr1:15703113-15703132 None:intergenic 10.0%
!!! TTTGGTATTATTATTATTTT+TGG - Chr1:15706484-15706503 None:intergenic 10.0%
!! AAATAAGGATAACAAATAAT+AGG + Chr1:15703143-15703162 MsG0180001079.01.T01:intron 15.0%
!! AATAAGGATAACAAATAATA+GGG + Chr1:15703144-15703163 MsG0180001079.01.T01:intron 15.0%
!! AATATTTCATATGAATTTCA+GGG - Chr1:15703710-15703729 None:intergenic 15.0%
!! ACACATATACATATAATATA+TGG - Chr1:15705411-15705430 None:intergenic 15.0%
!! ATAAAATTCTTTACTATATC+GGG - Chr1:15704347-15704366 None:intergenic 15.0%
!! CATATAATATCATATGTATT+AGG - Chr1:15701010-15701029 None:intergenic 15.0%
!! GATTTCAAACAATAATAATA+TGG + Chr1:15702622-15702641 MsG0180001079.01.T01:intron 15.0%
!! GTAAAAAGTGAAAAAATATT+TGG - Chr1:15707164-15707183 None:intergenic 15.0%
!! TAATATGGATCTTTAATAAA+TGG + Chr1:15701815-15701834 MsG0180001079.01.T01:intron 15.0%
!! TAATTTAGAGGAAAATTATT+AGG + Chr1:15703072-15703091 MsG0180001079.01.T01:intron 15.0%
!! TTGTTTATATTAGACATATA+TGG + Chr1:15705566-15705585 MsG0180001079.01.T01:intron 15.0%
!!! AAAACAATAATTCTTTGAAA+GGG + Chr1:15706043-15706062 MsG0180001079.01.T01:intron 15.0%
!!! AAATTGTTTAAGAGTATAAT+TGG - Chr1:15701336-15701355 None:intergenic 15.0%
!!! AGAACAATTTTACATTTTAA+AGG + Chr1:15705663-15705682 MsG0180001079.01.T01:intron 15.0%
!!! ATATTTCAATTTAAAGTTGA+AGG + Chr1:15704692-15704711 MsG0180001079.01.T01:CDS 15.0%
!!! GAAAACAATAATTTTTTGAA+AGG + Chr1:15705770-15705789 MsG0180001079.01.T01:intron 15.0%
!!! GAACAATTTTACATTTTAAA+GGG + Chr1:15705664-15705683 MsG0180001079.01.T01:intron 15.0%
!!! GTAAATTTTGAAATTAAGAA+AGG - Chr1:15704183-15704202 None:intergenic 15.0%
!!! GTGTTTTTTTTATGAAATTT+TGG - Chr1:15701433-15701452 None:intergenic 15.0%
!!! GTTACTTGTATTTAAAATTA+AGG - Chr1:15701165-15701184 None:intergenic 15.0%
!!! TATATTTTTGTTGAGATTTA+AGG - Chr1:15702040-15702059 None:intergenic 15.0%
!!! TCAATTGATTTTATCTTTAT+TGG - Chr1:15703404-15703423 None:intergenic 15.0%
!!! TTTAAAATTAAGGGTATTTT+TGG - Chr1:15701155-15701174 None:intergenic 15.0%
!! AAAATAGGATCAATTTGATT+TGG - Chr1:15704825-15704844 None:intergenic 20.0%
!! AATATAATTGTGTTAAATCG+TGG + Chr1:15705527-15705546 MsG0180001079.01.T01:intron 20.0%
!! AATTCTTTGTAGCAAATATT+GGG - Chr1:15699909-15699928 None:intergenic 20.0%
!! ATTTGTAATGATCTAATGAA+TGG - Chr1:15706208-15706227 None:intergenic 20.0%
!! CACCTATTATGATTATTATT+AGG - Chr1:15701973-15701992 None:intergenic 20.0%
!! CTATTATGATTATTATTAGG+CGG - Chr1:15701970-15701989 None:intergenic 20.0%
!! CTTATTTAATATGTCTAATC+CGG + Chr1:15702725-15702744 MsG0180001079.01.T01:intron 20.0%
!! CTTATTTAATATGTCTAATC+CGG - Chr1:15702744-15702725 None:intergenic 20.0%
!! CTTTAGGTAGAATAATAATA+GGG - Chr1:15707301-15707320 None:intergenic 20.0%
!! GAAAACAATAATTCTTTGAA+AGG + Chr1:15706042-15706061 MsG0180001079.01.T01:intron 20.0%
!! GAATATTTCATATGAATTTC+AGG - Chr1:15703711-15703730 None:intergenic 20.0%
!! TAAATCTTCATTAACATGTA+GGG + Chr1:15704974-15704993 MsG0180001079.01.T01:intron 20.0%
!! TAATAATTAGGTTAGAGATT+CGG + Chr1:15702062-15702081 MsG0180001079.01.T01:intron 20.0%
!! TACCAAATATATGTTATAAG+TGG + Chr1:15706497-15706516 MsG0180001079.01.T01:intron 20.0%
!! TACCACTTATAACATATATT+TGG - Chr1:15706502-15706521 None:intergenic 20.0%
!! TATGTTTACAACAAGTTTAT+AGG + Chr1:15705624-15705643 MsG0180001079.01.T01:intron 20.0%
!! TATTGAATTTGAAGAGAAAA+TGG - Chr1:15707335-15707354 None:intergenic 20.0%
!! TCTATAAATATAATGCACTA+GGG - Chr1:15706819-15706838 None:intergenic 20.0%
!! TGAAATTAAGAAAGGAAAAA+AGG - Chr1:15704175-15704194 None:intergenic 20.0%
!! TTAAATCTTCATTAACATGT+AGG + Chr1:15704973-15704992 MsG0180001079.01.T01:intron 20.0%
!! TTAATTCGGTTAATCTAATA+TGG + Chr1:15701800-15701819 MsG0180001079.01.T01:intron 20.0%
!! TTATTTAATATGTCTAATCC+GGG + Chr1:15702726-15702745 MsG0180001079.01.T01:intron 20.0%
!! TTATTTAATATGTCTAATCC+GGG - Chr1:15702745-15702726 None:intergenic 20.0%
!! TTCAATAGTTATCGTTATTT+GGG - Chr1:15707073-15707092 None:intergenic 20.0%
!! TTCCAAAATCCAAAAAAATA+CGG + Chr1:15704795-15704814 MsG0180001079.01.T01:CDS 20.0%
!! TTGGAATAATAATCTTCTTT+GGG - Chr1:15704236-15704255 None:intergenic 20.0%
!! TTGGACAATAAATAAAAGTT+TGG + Chr1:15700874-15700893 MsG0180001079.01.T01:intron 20.0%
!!! AGAACAATTTTACATTCTAA+AGG + Chr1:15705956-15705975 MsG0180001079.01.T01:intron 20.0%
!!! ATATTGCATATTTTATATGG+GGG + Chr1:15705354-15705373 MsG0180001079.01.T01:intron 20.0%
!!! ATCTAGAACATATACAATTT+AGG + Chr1:15704546-15704565 MsG0180001079.01.T01:intron 20.0%
!!! CATTTTAGAGGAAAATTATT+AGG - Chr1:15702244-15702263 None:intergenic 20.0%
!!! GAATTTTATAGAGAATATCA+AGG + Chr1:15704358-15704377 MsG0180001079.01.T01:CDS 20.0%
!!! GATATTGCATATTTTATATG+GGG + Chr1:15705353-15705372 MsG0180001079.01.T01:intron 20.0%
!!! GGATATTGCATATTTTATAT+GGG + Chr1:15705352-15705371 MsG0180001079.01.T01:intron 20.0%
!!! TAATTGAAGTATTTTACTCA+AGG + Chr1:15706400-15706419 MsG0180001079.01.T01:intron 20.0%
!!! TATATTTTTGTTGAGATCTA+AGG - Chr1:15703307-15703326 None:intergenic 20.0%
!!! TCTAGAACATATACAATTTA+GGG + Chr1:15704547-15704566 MsG0180001079.01.T01:intron 20.0%
!!! TGTAAACGTATTTTTTTTTG+TGG - Chr1:15702503-15702522 None:intergenic 20.0%
!!! TTTGGAATAATAATCTTCTT+TGG - Chr1:15704237-15704256 None:intergenic 20.0%
! AAAAGAATCTTAAGTTACCT+TGG - Chr1:15704086-15704105 None:intergenic 25.0%
! AAAATATTTGGGTCAAATCA+TGG - Chr1:15707152-15707171 None:intergenic 25.0%
! AAATATTTGGGTCAAATCAT+GGG - Chr1:15707151-15707170 None:intergenic 25.0%
! AACAAAATTTCTCTGATTAC+CGG + Chr1:15706706-15706725 MsG0180001079.01.T01:intron 25.0%
! AACCATCTACTAGAATAATA+TGG + Chr1:15705118-15705137 MsG0180001079.01.T01:intron 25.0%
! AAGATTTCATACCTAAAACA+AGG + Chr1:15704049-15704068 MsG0180001079.01.T01:CDS 25.0%
! AATACTCTTATAGTAGTGTA+TGG - Chr1:15701778-15701797 None:intergenic 25.0%
! AATTTCAAAATTTACTTGCC+AGG + Chr1:15704188-15704207 MsG0180001079.01.T01:intron 25.0%
! ACATATAATATATGGAGAAG+TGG - Chr1:15705403-15705422 None:intergenic 25.0%
! ACCAATATCAAATGTGTATA+AGG - Chr1:15704261-15704280 None:intergenic 25.0%
! ACCATCTACTAGAATAATAT+GGG + Chr1:15705119-15705138 MsG0180001079.01.T01:intron 25.0%
! AGTTATAAGTTAACTCATGT+AGG + Chr1:15700489-15700508 MsG0180001079.01.T01:intron 25.0%
! ATAATGAATCTCATACAACT+TGG + Chr1:15701626-15701645 MsG0180001079.01.T01:intron 25.0%
! ATATAATATATGGAGAAGTG+GGG - Chr1:15705401-15705420 None:intergenic 25.0%
! ATATACCCTAACTTGAAAAT+AGG - Chr1:15704840-15704859 None:intergenic 25.0%
! ATGCTGTATAAAAAAAGTGA+TGG - Chr1:15707126-15707145 None:intergenic 25.0%
! ATGTTTCTCTCTAAATCTAA+TGG + Chr1:15701668-15701687 MsG0180001079.01.T01:intron 25.0%
! ATTACTAAAATGCAACTTAC+TGG + Chr1:15704521-15704540 MsG0180001079.01.T01:intron 25.0%
! ATTCTTTGTAGCAAATATTG+GGG - Chr1:15699908-15699927 None:intergenic 25.0%
! CAAGTGTATAGATATATCTA+AGG + Chr1:15706308-15706327 MsG0180001079.01.T01:intron 25.0%
! CAAGTTAGGGTATATATATT+TGG + Chr1:15704845-15704864 MsG0180001079.01.T01:CDS 25.0%
! CAATTCTTTGTAGCAAATAT+TGG - Chr1:15699910-15699929 None:intergenic 25.0%
! CATATAATATATGGAGAAGT+GGG - Chr1:15705402-15705421 None:intergenic 25.0%
! CCTATTATTATTCTACCTAA+AGG + Chr1:15707299-15707318 MsG0180001079.01.T01:CDS 25.0%
! CCTTTAGGTAGAATAATAAT+AGG - Chr1:15707302-15707321 None:intergenic 25.0%
! CGCCTAATAATAATCATAAT+AGG + Chr1:15701968-15701987 MsG0180001079.01.T01:intron 25.0%
! CTAGAACATATACAATTTAG+GGG + Chr1:15704548-15704567 MsG0180001079.01.T01:intron 25.0%
! CTTCAATAGTTATCGTTATT+TGG - Chr1:15707074-15707093 None:intergenic 25.0%
! GATTTCATATCGAAAACAAA+AGG + Chr1:15707368-15707387 MsG0180001079.01.T01:CDS 25.0%
! GCATAGAAAATGAAATAGAA+AGG - Chr1:15700108-15700127 None:intergenic 25.0%
! GTATATAGTCATAAATGACT+TGG + Chr1:15706519-15706538 MsG0180001079.01.T01:intron 25.0%
! GTATTCGTTGAATATTGATA+AGG - Chr1:15700971-15700990 None:intergenic 25.0%
! GTCTATAAATATAATGCACT+AGG - Chr1:15706820-15706839 None:intergenic 25.0%
! GTGGTTTAACTCAAAAATAA+TGG - Chr1:15701035-15701054 None:intergenic 25.0%
! GTTTGTACCATTTATGTTTA+TGG - Chr1:15705076-15705095 None:intergenic 25.0%
! TAGATAAAGTTAGCAGAAAA+GGG - Chr1:15704394-15704413 None:intergenic 25.0%
! TGGAATAATAATCTTCTTTG+GGG - Chr1:15704235-15704254 None:intergenic 25.0%
!! AATCAATTTTCCCTTCAATT+TGG - Chr1:15706145-15706164 None:intergenic 25.0%
!! AATGGACTTTCAAAAAGAAT+GGG + Chr1:15706743-15706762 MsG0180001079.01.T01:intron 25.0%
!! AGTCTAACAATTCTTTTCAA+AGG + Chr1:15701059-15701078 MsG0180001079.01.T01:intron 25.0%
!! ATCTTTTAACCAAGAAAACA+CGG + Chr1:15702786-15702805 MsG0180001079.01.T01:intron 25.0%
!! ATCTTTTAACCAAGAAAACA+CGG - Chr1:15702805-15702786 None:intergenic 25.0%
!! ATTTGAATGGTTTGTACAAA+AGG + Chr1:15706110-15706129 MsG0180001079.01.T01:intron 25.0%
!! CGGATTAGACATATTAAATA+AGG + Chr1:15702092-15702111 MsG0180001079.01.T01:intron 25.0%
!! CGGATTAGACATATTAAATA+AGG - Chr1:15702111-15702092 None:intergenic 25.0%
!! GACTTTTGTAGAATCAATAT+AGG + Chr1:15706422-15706441 MsG0180001079.01.T01:intron 25.0%
!! GGGATATTGCATATTTTATA+TGG + Chr1:15705351-15705370 MsG0180001079.01.T01:intron 25.0%
!! TATCTAAGGTTGTCAAAATA+TGG + Chr1:15706322-15706341 MsG0180001079.01.T01:intron 25.0%
!! TTCATTGATAACTCCAAATA+AGG - Chr1:15705603-15705622 None:intergenic 25.0%
!! TTTATTGTGTTGAACACTTT+TGG + Chr1:15700141-15700160 MsG0180001079.01.T01:intron 25.0%
!!! AAACGTATTTTTTTTTGTGG+TGG - Chr1:15702500-15702519 None:intergenic 25.0%
!!! ACTTTTTTCAATAGATCATC+TGG + Chr1:15700024-15700043 MsG0180001079.01.T01:CDS 25.0%
!!! ATTGATCCTATTTTCAAGTT+AGG + Chr1:15704831-15704850 MsG0180001079.01.T01:CDS 25.0%
!!! CTGAATTTTAGGATTTAAGT+CGG + Chr1:15706645-15706664 MsG0180001079.01.T01:intron 25.0%
!!! GTGCGATTTTTAAGAAAATA+GGG - Chr1:15700796-15700815 None:intergenic 25.0%
!!! TATTTTAGAGGGAATTTGTT+AGG + Chr1:15703024-15703043 MsG0180001079.01.T01:intron 25.0%
!!! TGAATTTTAGGATTTAAGTC+GGG + Chr1:15706646-15706665 MsG0180001079.01.T01:intron 25.0%
!!! TTGATCCTATTTTCAAGTTA+GGG + Chr1:15704832-15704851 MsG0180001079.01.T01:CDS 25.0%
AAAATCGCAATCAAAATCGA+TGG + Chr1:15706452-15706471 MsG0180001079.01.T01:intron 30.0%
AACCTAATGCAGTAATTTAG+AGG + Chr1:15703060-15703079 MsG0180001079.01.T01:intron 30.0%
AAGAATTGTTAGACTTAACG+TGG - Chr1:15701054-15701073 None:intergenic 30.0%
AAGCAAAGTGATGATTTGAA+TGG + Chr1:15706097-15706116 MsG0180001079.01.T01:intron 30.0%
AATAAAAAGAGCAGAAAGAC+GGG + Chr1:15701479-15701498 MsG0180001079.01.T01:intron 30.0%
AATAATAGGGATAGAACAGA+TGG - Chr1:15707288-15707307 None:intergenic 30.0%
ACCTAAAACAAGGTTCATTA+GGG + Chr1:15704059-15704078 MsG0180001079.01.T01:CDS 30.0%
ACTAGTAATATCATACCTAG+TGG + Chr1:15703982-15704001 MsG0180001079.01.T01:CDS 30.0%
AGCGTACTATACTAAATTGA+AGG + Chr1:15705748-15705767 MsG0180001079.01.T01:intron 30.0%
ATAATTGTGTTAAATCGTGG+TGG + Chr1:15705530-15705549 MsG0180001079.01.T01:intron 30.0%
ATCAAATGTGTATAAGGCTT+TGG - Chr1:15704255-15704274 None:intergenic 30.0%
ATCAAGATATGCACTTAGAT+AGG - Chr1:15703896-15703915 None:intergenic 30.0%
ATCAGTGAGGAGAAATATTA+GGG + Chr1:15702994-15703013 MsG0180001079.01.T01:intron 30.0%
ATTTCATATGAATTTCAGGG+TGG - Chr1:15703707-15703726 None:intergenic 30.0%
CAATAAAAAGAGCAGAAAGA+CGG + Chr1:15701478-15701497 MsG0180001079.01.T01:intron 30.0%
CGAATCATTCTTGATTTCAT+AGG + Chr1:15700063-15700082 MsG0180001079.01.T01:CDS 30.0%
CGACTTAAATCCTAAAATTC+AGG - Chr1:15706647-15706666 None:intergenic 30.0%
CTAGGTATGATATTACTAGT+AGG - Chr1:15703982-15704001 None:intergenic 30.0%
CTTAAATACACAGTTCCTTA+CGG + Chr1:15706880-15706899 MsG0180001079.01.T01:intron 30.0%
CTTTATAGCAGATGGAAAAT+TGG - Chr1:15704631-15704650 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + Chr1:15702455-15702474 MsG0180001079.01.T01:intron 30.0%
GCCTTATACACATTTGATAT+TGG + Chr1:15704257-15704276 MsG0180001079.01.T01:CDS 30.0%
GGAAAATTGGCCAAAATTAA+AGG - Chr1:15704618-15704637 None:intergenic 30.0%
GGATTCTCAAACAAAAGAAA+TGG - Chr1:15700645-15700664 None:intergenic 30.0%
GGGTATATATATTTGGATTG+CGG + Chr1:15704852-15704871 MsG0180001079.01.T01:CDS 30.0%
GTAGATAAAGTTAGCAGAAA+AGG - Chr1:15704395-15704414 None:intergenic 30.0%
GTGCTTCATCATAAAATTCA+TGG + Chr1:15699816-15699835 MsG0180001079.01.T01:exon 30.0%
TAACTATCCTTTATAGCAGA+TGG - Chr1:15704639-15704658 None:intergenic 30.0%
TAACTATTGAAGCTTTCTGT+AGG + Chr1:15707082-15707101 MsG0180001079.01.T01:intron 30.0%
TAATATTTCTCCTCACTGAT+GGG - Chr1:15702994-15703013 None:intergenic 30.0%
TACAACTATAACATTAGTGC+TGG + Chr1:15705039-15705058 MsG0180001079.01.T01:CDS 30.0%
TACCTAAAACAAGGTTCATT+AGG + Chr1:15704058-15704077 MsG0180001079.01.T01:CDS 30.0%
TATATATAGCTGAGTTTGCA+TGG + Chr1:15702821-15702840 MsG0180001079.01.T01:intron 30.0%
TCAAGATATGCACTTAGATA+GGG - Chr1:15703895-15703914 None:intergenic 30.0%
TCCAAGTTGTATAACAATTG+TGG - Chr1:15701697-15701716 None:intergenic 30.0%
TCCACAATTGTTATACAACT+TGG + Chr1:15701693-15701712 MsG0180001079.01.T01:intron 30.0%
TCCCATATTATTCTAGTAGA+TGG - Chr1:15705123-15705142 None:intergenic 30.0%
TCGAAAGGAAATAGCAAAAT+CGG + Chr1:15706358-15706377 MsG0180001079.01.T01:intron 30.0%
TCTAAATCTGATTATCTCCA+CGG - Chr1:15700267-15700286 None:intergenic 30.0%
TCTACTAGAATAATATGGGA+TGG + Chr1:15705123-15705142 MsG0180001079.01.T01:intron 30.0%
TCTGCTATAAAGGATAGTTA+TGG + Chr1:15704639-15704658 MsG0180001079.01.T01:CDS 30.0%
TTCCTCTAAATTACTGCATT+AGG - Chr1:15703065-15703084 None:intergenic 30.0%
TTCTTTGTAGCAAATATTGG+GGG - Chr1:15699907-15699926 None:intergenic 30.0%
TTGAAAAAAGTCTCACCATA+TGG - Chr1:15700015-15700034 None:intergenic 30.0%
TTTAAGAAAATAGGGAGTGA+AGG - Chr1:15700788-15700807 None:intergenic 30.0%
TTTCTTAAAAATCGCACGTT+CGG + Chr1:15700799-15700818 MsG0180001079.01.T01:intron 30.0%
TTTGTGTCCTTAATTAAGCT+CGG - Chr1:15704148-15704167 None:intergenic 30.0%
! AAAAGGCTTAATTGCACTTT+TGG + Chr1:15707385-15707404 MsG0180001079.01.T01:CDS 30.0%
! AAAAGTGATGGAGATTATGT+TGG - Chr1:15707114-15707133 None:intergenic 30.0%
! AAAGTGATGGAGATTATGTT+GGG - Chr1:15707113-15707132 None:intergenic 30.0%
! ATTAAAGGTACACATCCAAT+TGG - Chr1:15704603-15704622 None:intergenic 30.0%
! CAATTTTCCATCTGCTATAA+AGG + Chr1:15704629-15704648 MsG0180001079.01.T01:CDS 30.0%
! GAATGGACTTTCAAAAAGAA+TGG + Chr1:15706742-15706761 MsG0180001079.01.T01:intron 30.0%
! GTTGCAAAATCCTGAATTTT+AGG + Chr1:15706634-15706653 MsG0180001079.01.T01:intron 30.0%
! GTTTTGTCGTATGAATATGA+AGG - Chr1:15701546-15701565 None:intergenic 30.0%
! TATCATTTTGCTACTACTTG+CGG + Chr1:15707219-15707238 MsG0180001079.01.T01:intron 30.0%
! TCATTTTGGATACATAACAC+TGG + Chr1:15704576-15704595 MsG0180001079.01.T01:CDS 30.0%
!! AATGGACTGATTATTCCTTT+AGG - Chr1:15707317-15707336 None:intergenic 30.0%
!! ATGTTGACTCGCTATAATTA+TGG + Chr1:15704918-15704937 MsG0180001079.01.T01:intron 30.0%
!! CGATGGATTTTGCTTATTTT+GGG + Chr1:15706574-15706593 MsG0180001079.01.T01:intron 30.0%
!! CGTGCGATTTTTAAGAAAAT+AGG - Chr1:15700797-15700816 None:intergenic 30.0%
!! TCGATGGATTTTGCTTATTT+TGG + Chr1:15706573-15706592 MsG0180001079.01.T01:intron 30.0%
!! TGGATGTGTACCTTTAATTT+TGG + Chr1:15704605-15704624 MsG0180001079.01.T01:CDS 30.0%
!! TGTTATTGGTTTGCATTCTT+TGG - Chr1:15703748-15703767 None:intergenic 30.0%
!! TTTTGAAAGGGTTTTACAGA+AGG + Chr1:15705783-15705802 MsG0180001079.01.T01:intron 30.0%
!! TTTTGAAAGTCCATTCGATT+TGG - Chr1:15706738-15706757 None:intergenic 30.0%
!!! AGAGATGTGTTTTGATATTC+AGG - Chr1:15703655-15703674 None:intergenic 30.0%
!!! CACCGTATTTTTTTGGATTT+TGG - Chr1:15704800-15704819 None:intergenic 30.0%
!!! CTTATTTTGGGATTTCACTA+TGG + Chr1:15706586-15706605 MsG0180001079.01.T01:intron 30.0%
!!! GAGATGTGTTTTGATATTCA+GGG - Chr1:15703654-15703673 None:intergenic 30.0%
!!! TTTCCTGCCATTTTTAACTT+CGG + Chr1:15699934-15699953 MsG0180001079.01.T01:CDS 30.0%
AAAATCGCAGTCAAAATCGA+TGG + Chr1:15706557-15706576 MsG0180001079.01.T01:intron 35.0%
AAACAACTAGATTAGAGACC+CGG - Chr1:15702763-15702782 None:intergenic 35.0%
AAACGATGACACAACATGAA+AGG + Chr1:15702959-15702978 MsG0180001079.01.T01:intron 35.0%
AAAGTCTCACCATATGGTAA+CGG - Chr1:15700009-15700028 None:intergenic 35.0%
AAATGGTACAAACACTGTTG+TGG + Chr1:15705083-15705102 MsG0180001079.01.T01:intron 35.0%
AACCAAGAAAACACGGTTTA+GGG + Chr1:15702793-15702812 MsG0180001079.01.T01:intron 35.0%
AACCAAGAAAACACGGTTTA+GGG - Chr1:15702812-15702793 None:intergenic 35.0%
AACCCAAAAATGTGCTGAAA+TGG - Chr1:15701120-15701139 None:intergenic 35.0%
AATGGTACAAACACTGTTGT+GGG + Chr1:15705084-15705103 MsG0180001079.01.T01:intron 35.0%
ACATATACAATTTAGGGGCA+AGG + Chr1:15704553-15704572 MsG0180001079.01.T01:CDS 35.0%
ACCAGTGAGGAGAAATATTA+GGG - Chr1:15702274-15702293 None:intergenic 35.0%
ACCCAAAAATGTGCTGAAAT+GGG - Chr1:15701119-15701138 None:intergenic 35.0%
AGTGCATATCTTGATTCTCT+TGG + Chr1:15703901-15703920 MsG0180001079.01.T01:CDS 35.0%
ATACATAACACTGGACCAAT+TGG + Chr1:15704585-15704604 MsG0180001079.01.T01:CDS 35.0%
ATGTACTACTAGCGAAAAGA+TGG - Chr1:15701515-15701534 None:intergenic 35.0%
ATTGAATGTACTGAACCTGA+AGG - Chr1:15704026-15704045 None:intergenic 35.0%
CAAAACACATCTCTCTATGT+CGG + Chr1:15703661-15703680 MsG0180001079.01.T01:intron 35.0%
CAAATCATCACTTTGCTTAG+AGG - Chr1:15706095-15706114 None:intergenic 35.0%
CATCAGTGAGGAGAAATATT+AGG + Chr1:15702993-15703012 MsG0180001079.01.T01:intron 35.0%
CCCTAATTTCTATGCAAACT+CGG + Chr1:15702532-15702551 MsG0180001079.01.T01:intron 35.0%
CCGAGTTTGCATAGAAATTA+GGG - Chr1:15702535-15702554 None:intergenic 35.0%
CGAAAGGAAATAGCAAAATC+GGG + Chr1:15706359-15706378 MsG0180001079.01.T01:intron 35.0%
CGCTGTTTATAAAACCTACA+CGG - Chr1:15707018-15707037 None:intergenic 35.0%
CTAATATTTCTCCTCACTGA+TGG - Chr1:15702995-15703014 None:intergenic 35.0%
CTGAGTTTGCATGGAAATTA+GGG + Chr1:15702830-15702849 MsG0180001079.01.T01:intron 35.0%
GACTTGAATCTCATACAACT+TGG - Chr1:15701614-15701595 None:intergenic 35.0%
GGAAGGTGATTAGACATATA+TGG + Chr1:15705859-15705878 MsG0180001079.01.T01:intron 35.0%
GGAGCAACCATAAACATAAA+TGG + Chr1:15705066-15705085 MsG0180001079.01.T01:CDS 35.0%
GTCTTTGATCAAATCTCTAC+TGG + Chr1:15705177-15705196 MsG0180001079.01.T01:intron 35.0%
GTGCATATCTTGATTCTCTT+GGG + Chr1:15703902-15703921 MsG0180001079.01.T01:CDS 35.0%
TAACCAAGAAAACACGGTTT+AGG + Chr1:15702792-15702811 MsG0180001079.01.T01:intron 35.0%
TAACCAAGAAAACACGGTTT+AGG - Chr1:15702811-15702792 None:intergenic 35.0%
TACATAGTCAAGTAACCTAG+TGG - Chr1:15705460-15705479 None:intergenic 35.0%
TACATGAGTTAACTCACACT+GGG - Chr1:15700469-15700488 None:intergenic 35.0%
TATACAAACGATGACACAAC+AGG - Chr1:15702973-15702954 None:intergenic 35.0%
TATATATAGCCGAGTTTGCA+TGG - Chr1:15702570-15702589 None:intergenic 35.0%
TGTACTACTAGCGAAAAGAT+GGG - Chr1:15701514-15701533 None:intergenic 35.0%
TGTGATTCCGAGCTTAATTA+AGG + Chr1:15704138-15704157 MsG0180001079.01.T01:intron 35.0%
TTACATGAGTTAACTCACAC+TGG - Chr1:15700470-15700489 None:intergenic 35.0%
TTCAAAATTTACTTGCCAGG+AGG + Chr1:15704191-15704210 MsG0180001079.01.T01:intron 35.0%
TTGAATGTACTGAACCTGAA+GGG - Chr1:15704025-15704044 None:intergenic 35.0%
! AAGAGCGAGCAATTTTTGTT+GGG + Chr1:15700605-15700624 MsG0180001079.01.T01:intron 35.0%
! ACCCATTTCAGCACATTTTT+GGG + Chr1:15701115-15701134 MsG0180001079.01.T01:intron 35.0%
! ACCTGAATGGTTTGTACAAA+AGG + Chr1:15705838-15705857 MsG0180001079.01.T01:intron 35.0%
! GAATGGTTTGTACAAAAGGA+AGG + Chr1:15705842-15705861 MsG0180001079.01.T01:intron 35.0%
! TAAGAGCGAGCAATTTTTGT+TGG + Chr1:15700604-15700623 MsG0180001079.01.T01:intron 35.0%
! TACCCATTTCAGCACATTTT+TGG + Chr1:15701114-15701133 MsG0180001079.01.T01:intron 35.0%
! TCATCTGGAAGATTTTCTGA+TGG + Chr1:15700039-15700058 MsG0180001079.01.T01:CDS 35.0%
! TCCTTTTGTACAAACCATTC+AGG - Chr1:15705842-15705861 None:intergenic 35.0%
!! AATGGACTAAACATTCCACT+AGG - Chr1:15704000-15704019 None:intergenic 35.0%
!! AGGGATTGCTGTATTTTAGA+GGG + Chr1:15703013-15703032 MsG0180001079.01.T01:intron 35.0%
!! CTTTGAAAGGGTTTTACAGA+AGG + Chr1:15706055-15706074 MsG0180001079.01.T01:intron 35.0%
!! GATGTAGATGGGTTTGTTAT+TGG - Chr1:15703762-15703781 None:intergenic 35.0%
!! GGTTTTGTAGCAACCTTATT+TGG + Chr1:15705587-15705606 MsG0180001079.01.T01:intron 35.0%
!! TAGGGATTGCTGTATTTTAG+AGG + Chr1:15703012-15703031 MsG0180001079.01.T01:intron 35.0%
!! TGAAGCACCGAAGTTAAAAA+TGG - Chr1:15699944-15699963 None:intergenic 35.0%
!! TGTTGAACACTTTTGGAAAG+TGG + Chr1:15700148-15700167 MsG0180001079.01.T01:intron 35.0%
!!! ATGTGTTTTGATATTCAGGG+TGG - Chr1:15703651-15703670 None:intergenic 35.0%
!!! GATCTTACTGCTGGATTTTT+TGG + Chr1:15704287-15704306 MsG0180001079.01.T01:CDS 35.0%
!!! GTATTTTTTTTTGTGGTGGC+CGG - Chr1:15702496-15702515 None:intergenic 35.0%
!!! GTGTCATCATTTTTTCACGT+TGG + Chr1:15700855-15700874 MsG0180001079.01.T01:intron 35.0%
!!! TATTTTTTTTTGTGGTGGCC+GGG - Chr1:15702495-15702514 None:intergenic 35.0%
!!! TCCCTAATGAACCTTGTTTT+AGG - Chr1:15704063-15704082 None:intergenic 35.0%
!!! TTTGGCTCACCGTATTTTTT+TGG - Chr1:15704807-15704826 None:intergenic 35.0%
!!! TTTTGGAAAAGAGAGTGCTT+TGG - Chr1:15704783-15704802 None:intergenic 35.0%
!!! TTTTTTGTCAAGTAGCCTAG+TGG - Chr1:15705499-15705518 None:intergenic 35.0%
AAACGATGACACAACAGGAT+AGG - Chr1:15702309-15702328 None:intergenic 40.0%
AAACTCTGATACTGGTGGTT+TGG + Chr1:15699963-15699982 MsG0180001079.01.T01:CDS 40.0%
AAGAAAATAGGGAGTGAAGG+TGG - Chr1:15700785-15700804 None:intergenic 40.0%
AAGCAAAGTGATGACCTGAA+TGG + Chr1:15705825-15705844 MsG0180001079.01.T01:intron 40.0%
AATGTTGCAAATACACCTCC+TGG - Chr1:15704209-15704228 None:intergenic 40.0%
ACAAAACATGATTGTGCGTG+GGG + Chr1:15701559-15701578 MsG0180001079.01.T01:intron 40.0%
ACATATGTGATTGCTGCTAG+TGG - Chr1:15704747-15704766 None:intergenic 40.0%
ACATGCCCTATTTAGTGGAA+TGG - Chr1:15705220-15705239 None:intergenic 40.0%
AGAAAATAGGGAGTGAAGGT+GGG - Chr1:15700784-15700803 None:intergenic 40.0%
AGTGTATGGTGCAACAATTG+TGG - Chr1:15701764-15701783 None:intergenic 40.0%
ATCCTCCCATTCCACTAAAT+AGG + Chr1:15705211-15705230 MsG0180001079.01.T01:intron 40.0%
ATGGGATTCAAAGAGTAGCT+AGG + Chr1:15706761-15706780 MsG0180001079.01.T01:intron 40.0%
CAAGACACAAAGATATCAGC+AGG + Chr1:15701994-15702013 MsG0180001079.01.T01:intron 40.0%
CACCAGTGAGGAGAAATATT+AGG - Chr1:15702275-15702294 None:intergenic 40.0%
CAGCATGCATCTACTATAAG+AGG - Chr1:15700238-15700257 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+CGG + Chr1:15702462-15702481 MsG0180001079.01.T01:intron 40.0%
CATCACTTTGCTTAGAGGAT+TGG - Chr1:15705818-15705837 None:intergenic 40.0%
CATGCCCTATTTAGTGGAAT+GGG - Chr1:15705219-15705238 None:intergenic 40.0%
CCCTAATTTCCATGCAAACT+CGG + Chr1:15702558-15702577 MsG0180001079.01.T01:intron 40.0%
CCCTAATTTCCATGCAAACT+CGG - Chr1:15702577-15702558 None:intergenic 40.0%
CCGAGTTTGCATGGAAATTA+GGG + Chr1:15702856-15702875 MsG0180001079.01.T01:intron 40.0%
CCGAGTTTGCATGGAAATTA+GGG - Chr1:15702875-15702856 None:intergenic 40.0%
CTATCGTAGTCTGTAGAGAA+CGG - Chr1:15707245-15707264 None:intergenic 40.0%
CTATGGATTTGAGTCGTTGA+AGG + Chr1:15706603-15706622 MsG0180001079.01.T01:intron 40.0%
CTGCTGATATCTTTGTGTCT+TGG - Chr1:15701996-15702015 None:intergenic 40.0%
CTGTAACATGCCCTATTTAG+TGG - Chr1:15705225-15705244 None:intergenic 40.0%
GAAGGTGAGACCAAATTGAA+GGG + Chr1:15706132-15706151 MsG0180001079.01.T01:intron 40.0%
GACAAAACATGATTGTGCGT+GGG + Chr1:15701558-15701577 MsG0180001079.01.T01:intron 40.0%
GCCGAGTTTGCATAGAAATT+AGG - Chr1:15702536-15702555 None:intergenic 40.0%
GCTGAGTTTGCATGGAAATT+AGG + Chr1:15702829-15702848 MsG0180001079.01.T01:intron 40.0%
GGACTTTACTTCAAGTCGAA+AGG + Chr1:15706343-15706362 MsG0180001079.01.T01:intron 40.0%
GGTCAAAATGATCTTACTGC+TGG + Chr1:15704278-15704297 MsG0180001079.01.T01:CDS 40.0%
TACTGAACCTGAAGGGAAAA+TGG - Chr1:15704018-15704037 None:intergenic 40.0%
TCCCTAATATTTCTCCTCAC+TGG + Chr1:15702270-15702289 MsG0180001079.01.T01:intron 40.0%
TCCTCCCATTCCACTAAATA+GGG + Chr1:15705212-15705231 MsG0180001079.01.T01:intron 40.0%
TGGGATTCAAAGAGTAGCTA+GGG + Chr1:15706762-15706781 MsG0180001079.01.T01:intron 40.0%
! AACCCTAAACCGTGTTTTCT+TGG + Chr1:15702593-15702612 MsG0180001079.01.T01:intron 40.0%
! AACCCTAAACCGTGTTTTCT+TGG - Chr1:15702612-15702593 None:intergenic 40.0%
! AGCATGCACGTCATATTTTC+TGG + Chr1:15706843-15706862 MsG0180001079.01.T01:intron 40.0%
! ATTTAGGGGCAAGGTCATTT+TGG + Chr1:15704562-15704581 MsG0180001079.01.T01:CDS 40.0%
! GTTTAGTCCATTTTCCCTTC+AGG + Chr1:15704008-15704027 MsG0180001079.01.T01:CDS 40.0%
! TAGGGATTGCAGCATTTTAG+AGG - Chr1:15702256-15702275 None:intergenic 40.0%
! TGCATATTTTATATGGGGGC+CGG + Chr1:15705358-15705377 MsG0180001079.01.T01:intron 40.0%
!! AGTCGGGATTTTGACAACAA+TGG + Chr1:15706662-15706681 MsG0180001079.01.T01:intron 40.0%
!! TATAACATTAGTGCTGGCTG+TGG + Chr1:15705045-15705064 MsG0180001079.01.T01:CDS 40.0%
!!! ATTTTTTTTTGTGGTGGCCG+GGG - Chr1:15702494-15702513 None:intergenic 40.0%
ACAAGGTTCATTAGGGACCA+AGG + Chr1:15704066-15704085 MsG0180001079.01.T01:CDS 45.0%
ACATGAGTTAACTCACGCTG+AGG - Chr1:15700521-15700540 None:intergenic 45.0%
AGGGTTTGAACTTCCACTAG+TGG + Chr1:15704993-15705012 MsG0180001079.01.T01:intron 45.0%
CAGCGTGAGTTAACTCATGT+AGG + Chr1:15700521-15700540 MsG0180001079.01.T01:intron 45.0%
CAGGTCATCACTTTGCTTAG+AGG - Chr1:15705823-15705842 None:intergenic 45.0%
CGACAAAACATGATTGTGCG+TGG + Chr1:15701557-15701576 MsG0180001079.01.T01:intron 45.0%
CTTGGGTCAAACTTCACACA+TGG + Chr1:15703919-15703938 MsG0180001079.01.T01:CDS 45.0%
GAAAATAGGGAGTGAAGGTG+GGG - Chr1:15700783-15700802 None:intergenic 45.0%
GAATGAAAAGCCCATCAGTG+AGG + Chr1:15702981-15703000 MsG0180001079.01.T01:intron 45.0%
GAATGAAAAGCTCACCAGTG+AGG - Chr1:15702287-15702306 None:intergenic 45.0%
GATAAACGCGATACACCGTA+AGG - Chr1:15706898-15706917 None:intergenic 45.0%
GCACCGAAGTTAAAAATGGC+AGG - Chr1:15699940-15699959 None:intergenic 45.0%
GCCGAGTTTGCATGGAAATT+AGG + Chr1:15702855-15702874 MsG0180001079.01.T01:intron 45.0%
GCCGAGTTTGCATGGAAATT+AGG - Chr1:15702874-15702855 None:intergenic 45.0%
GCTTCAAACTCTGATACTGG+TGG + Chr1:15699958-15699977 MsG0180001079.01.T01:CDS 45.0%
GGAAGGTGAGACCAAATTGA+AGG + Chr1:15706131-15706150 MsG0180001079.01.T01:intron 45.0%
GGATGGTACTCATTACACAG+AGG + Chr1:15705140-15705159 MsG0180001079.01.T01:intron 45.0%
GGTGCTTCAAACTCTGATAC+TGG + Chr1:15699955-15699974 MsG0180001079.01.T01:CDS 45.0%
GTGCAAACTTTGCAACAGCA+GGG + Chr1:15703941-15703960 MsG0180001079.01.T01:CDS 45.0%
! ATGTGTGAGCTTTAGCCACT+AGG + Chr1:15705442-15705461 MsG0180001079.01.T01:intron 45.0%
! CATATTTTATATGGGGGCCG+GGG + Chr1:15705360-15705379 MsG0180001079.01.T01:intron 45.0%
! GCATATTTTATATGGGGGCC+GGG + Chr1:15705359-15705378 MsG0180001079.01.T01:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + Chr1:15702433-15702452 MsG0180001079.01.T01:intron 45.0%
!! CCATTCGATTTGGCTAACAC+CGG - Chr1:15706728-15706747 None:intergenic 45.0%
!! CAAAAATATAATTAATAATT+AGG + Chr1:15702050-15702069 MsG0180001079.01.T01:intron 5.0%
!!! AACTTTTTATATTAAAAAAA+AGG + Chr1:15705268-15705287 MsG0180001079.01.T01:intron 5.0%
!!! ATATAAATCATAATTTTTTT+AGG + Chr1:15703482-15703501 MsG0180001079.01.T01:intron 5.0%
!!! ATTTTATAATAACAAATAAT+AGG + Chr1:15701876-15701895 MsG0180001079.01.T01:intron 5.0%
!!! TTATACTTTTTAAATAATAA+AGG - Chr1:15701273-15701292 None:intergenic 5.0%
!!! TTTTATAATAACAAATAATA+GGG + Chr1:15701877-15701896 MsG0180001079.01.T01:intron 5.0%
AAAGAGCAGAAAGACGGGCA+TGG + Chr1:15701484-15701503 MsG0180001079.01.T01:intron 50.0%
ATCCCTGCGAAGATGAGCTA+GGG - Chr1:15704721-15704740 None:intergenic 50.0%
GCCCTATTTAGTGGAATGGG+AGG - Chr1:15705216-15705235 None:intergenic 50.0%
GGTGCAAACTTTGCAACAGC+AGG + Chr1:15703940-15703959 MsG0180001079.01.T01:CDS 50.0%
TCATATGCGTGTGACCGTGT+AGG + Chr1:15707001-15707020 MsG0180001079.01.T01:intron 50.0%
TCGCATGAGTTAACTCACGC+AGG + Chr1:15700367-15700386 MsG0180001079.01.T01:intron 50.0%
TGAGCTTAGCTCAGTTGGCA+GGG + Chr1:15705331-15705350 MsG0180001079.01.T01:intron 50.0%
TGCCAACTGAGCTAAGCTCA+CGG - Chr1:15705331-15705350 None:intergenic 50.0%
TGCGTGAGTTAACTCATGCG+AGG - Chr1:15700368-15700387 None:intergenic 50.0%
TGCGTGAGTTAACTCGCGTT+CGG - Chr1:15700562-15700581 None:intergenic 50.0%
TTAGGGTAGCCGAGTTTGCA+TGG + Chr1:15702847-15702866 MsG0180001079.01.T01:intron 50.0%
TTGCCACAACAAGCCACTAG+TGG - Chr1:15705009-15705028 None:intergenic 50.0%
! ATATGGAGAAGTGGGGTGTC+CGG - Chr1:15705394-15705413 None:intergenic 50.0%
! CCGGTGTTAGCCAAATCGAA+TGG + Chr1:15706725-15706744 MsG0180001079.01.T01:intron 50.0%
!! CTAGTGGCTTGTTGTGGCAA+TGG + Chr1:15705009-15705028 MsG0180001079.01.T01:CDS 50.0%
!! CTTCCACTAGTGGCTTGTTG+TGG + Chr1:15705003-15705022 MsG0180001079.01.T01:CDS 50.0%
AAGCCCTAGCTCATCTTCGC+AGG + Chr1:15704715-15704734 MsG0180001079.01.T01:CDS 55.0%
AATCCGGGCAACGTTAACGC+CGG + Chr1:15702741-15702760 MsG0180001079.01.T01:intron 55.0%
AGCCCTAGCTCATCTTCGCA+GGG + Chr1:15704716-15704735 MsG0180001079.01.T01:CDS 55.0%
CAGCGTGAGTTAACACACGC+AGG + Chr1:15700437-15700456 MsG0180001079.01.T01:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - Chr1:15702431-15702450 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + Chr1:15702428-15702447 MsG0180001079.01.T01:intron 55.0%
GAGCGTGACTTAAGTCACGC+TGG - Chr1:15700401-15700420 None:intergenic 55.0%
GATCCCTGCGAAGATGAGCT+AGG - Chr1:15704722-15704741 None:intergenic 55.0%
GATGCATGCTGCAACAACCG+TGG + Chr1:15700247-15700266 MsG0180001079.01.T01:intron 55.0%
GCCAACTGAGCTAAGCTCAC+GGG - Chr1:15705330-15705349 None:intergenic 55.0%
GTGAGCTTAGCTCAGTTGGC+AGG + Chr1:15705330-15705349 MsG0180001079.01.T01:intron 55.0%
GTTAGAGATTCGGCGTTGCC+CGG + Chr1:15702072-15702091 MsG0180001079.01.T01:intron 55.0%
TCCCGTGAGCTTAGCTCAGT+TGG + Chr1:15705326-15705345 MsG0180001079.01.T01:intron 55.0%
! CGAGCACTGCCGTTACCATA+TGG + Chr1:15699997-15700016 MsG0180001079.01.T01:CDS 55.0%
! TATGGAGAAGTGGGGTGTCC+GGG - Chr1:15705393-15705412 None:intergenic 55.0%
!! GTGGCTTGTTGTGGCAATGG+AGG + Chr1:15705012-15705031 MsG0180001079.01.T01:CDS 55.0%
!! TGGTAACGGCAGTGCTCGAA+AGG - Chr1:15699995-15700014 None:intergenic 55.0%
AAGGTCCGCGGTTCAAACCC+CGG + Chr1:15702474-15702493 MsG0180001079.01.T01:intron 60.0%
ATCCGGGCAACGTTAACGCC+GGG + Chr1:15702742-15702761 MsG0180001079.01.T01:intron 60.0%
! ATGGAGAAGTGGGGTGTCCG+GGG - Chr1:15705392-15705411 None:intergenic 60.0%
GACCCGGCGTTAACGTTGCC+CGG - Chr1:15702747-15702766 None:intergenic 65.0%
GGTGGCCGGGGTTTGAACCG+CGG - Chr1:15702482-15702501 None:intergenic 70.0%
GGTGTCCGGGGTTCGAACCC+CGG - Chr1:15705380-15705399 None:intergenic 70.0%
! GGGGGCCGGGGTTCGAACCC+CGG + Chr1:15705372-15705391 MsG0180001079.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 15699787 15707415 15699787 ID=MsG0180001079.01;Name=MsG0180001079.01
Chr1 mRNA 15699787 15707415 15699787 ID=MsG0180001079.01.T01;Parent=MsG0180001079.01;Name=MsG0180001079.01.T01;_AED=0.49;_eAED=0.51;_QI=48|0.6|0.5|1|0.8|0.66|6|0|402
Chr1 exon 15699787 15700084 15699787 ID=MsG0180001079.01.T01:exon:4859;Parent=MsG0180001079.01.T01
Chr1 exon 15703875 15704087 15703875 ID=MsG0180001079.01.T01:exon:4860;Parent=MsG0180001079.01.T01
Chr1 exon 15704210 15704379 15704210 ID=MsG0180001079.01.T01:exon:4861;Parent=MsG0180001079.01.T01
Chr1 exon 15704552 15704873 15704552 ID=MsG0180001079.01.T01:exon:4862;Parent=MsG0180001079.01.T01
Chr1 exon 15704995 15705087 15704995 ID=MsG0180001079.01.T01:exon:4863;Parent=MsG0180001079.01.T01
Chr1 exon 15707255 15707415 15707255 ID=MsG0180001079.01.T01:exon:4864;Parent=MsG0180001079.01.T01
Chr1 five_prime_UTR 15699787 15699834 15699787 ID=MsG0180001079.01.T01:five_prime_utr;Parent=MsG0180001079.01.T01
Chr1 CDS 15699835 15700084 15699835 ID=MsG0180001079.01.T01:cds;Parent=MsG0180001079.01.T01
Chr1 CDS 15703875 15704087 15703875 ID=MsG0180001079.01.T01:cds;Parent=MsG0180001079.01.T01
Chr1 CDS 15704210 15704379 15704210 ID=MsG0180001079.01.T01:cds;Parent=MsG0180001079.01.T01
Chr1 CDS 15704552 15704873 15704552 ID=MsG0180001079.01.T01:cds;Parent=MsG0180001079.01.T01
Chr1 CDS 15704995 15705087 15704995 ID=MsG0180001079.01.T01:cds;Parent=MsG0180001079.01.T01
Chr1 CDS 15707255 15707415 15707255 ID=MsG0180001079.01.T01:cds;Parent=MsG0180001079.01.T01
Gene Sequence

>MsG0180001079.01.T01

ATGGCACAAATTGAGTTTCTTAAGCACATGTCACTTGTGTCATTGATTGTGCTTATTTTGTGTTCTACACCCCCAATATTTGCTACAAAGAATTGTGATTTTCCTGCCATTTTTAACTTCGGTGCTTCAAACTCTGATACTGGTGGTTTGGCTGCTGCCTTTCGAGCACTGCCGTTACCATATGGTGAGACTTTTTTCAATAGATCATCTGGAAGATTTTCTGATGGTCGAATCATTCTTGATTTCATAGCACAAAGCTTTCGACTTCCCTATCTAAGTGCATATCTTGATTCTCTTGGGTCAAACTTCACACATGGTGCAAACTTTGCAACAGCAGGGTCAACGATCAAAATTCCTACTAGTAATATCATACCTAGTGGAATGTTTAGTCCATTTTCCCTTCAGGTTCAGTACATTCAATTCAAAGATTTCATACCTAAAACAAGGTTCATTAGGGACCAAGGAGGTGTATTTGCAACATTGATCCCCAAAGAAGATTATTATTCCAAAGCCTTATACACATTTGATATTGGTCAAAATGATCTTACTGCTGGATTTTTTGGTAATAAGACTATACAACAAGTCAACGCTACTGTACCCGATATAGTAAAGAATTTTATAGAGAATATCAAGAACATATACAATTTAGGGGCAAGGTCATTTTGGATACATAACACTGGACCAATTGGATGTGTACCTTTAATTTTGGCCAATTTTCCATCTGCTATAAAGGATAGTTATGGTTGTGCAAAGCAATACAATGAAGTATCTCAATATTTCAATTTAAAGTTGAAGGAAGCCCTAGCTCATCTTCGCAGGGATCTTCCACTAGCAGCAATCACATATGTTGATATTTACTCTCCAAAGCACTCTCTTTTCCAAAATCCAAAAAAATACGGTGAGCCAAATCAAATTGATCCTATTTTCAAGTTAGGGTATATATATTTGGATTGCGGGTTTGAACTTCCACTAGTGGCTTGTTGTGGCAATGGAGGAAAGTACAACTATAACATTAGTGCTGGCTGTGGAGCAACCATAAACATAAATGACTACGATAGTATTATTATACAGATACGAGCCATCTGTTCTATCCCTATTATTATTCTACCTAAAGGAATAATCAGTCCATTTTCTCTTCAAATTCAATACATTCAATTCAAAGATTTCATATCGAAAACAAAAGGCTTAATTGCACTTTTGGCCCCCTAA

Protein sequence

>MsG0180001079.01.T01

MAQIEFLKHMSLVSLIVLILCSTPPIFATKNCDFPAIFNFGASNSDTGGLAAAFRALPLPYGETFFNRSSGRFSDGRIILDFIAQSFRLPYLSAYLDSLGSNFTHGANFATAGSTIKIPTSNIIPSGMFSPFSLQVQYIQFKDFIPKTRFIRDQGGVFATLIPKEDYYSKALYTFDIGQNDLTAGFFGNKTIQQVNATVPDIVKNFIENIKNIYNLGARSFWIHNTGPIGCVPLILANFPSAIKDSYGCAKQYNEVSQYFNLKLKEALAHLRRDLPLAAITYVDIYSPKHSLFQNPKKYGEPNQIDPIFKLGYIYLDCGFELPLVACCGNGGKYNYNISAGCGATININDYDSIIIQIRAICSIPIIILPKGIISPFSLQIQYIQFKDFISKTKGLIALLAP*