AlfalfaGEDB | MsG0380013439.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013439.01

KEGG: -
GO: -
PFAM: PF00168

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013439.01.T01	RHN66718.1	96.445	422	15	0	1	422	22	443	0	844

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013439.01.T01	A0A396IPR0	96.445	422	15	0	1	422	22	443	0.0	844

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000116.01	MsG0380013439.01	0.814528	1.471763e-51	9.899650e-49
MsG0280009754.01	MsG0380013439.01	0.804431	2.167112e-49	1.117146e-46
MsG0280011334.01	MsG0380013439.01	0.816472	5.434895e-52	3.854490e-49
MsG0380013439.01	MsG0480023165.01	0.806689	7.282885e-50	3.978283e-47
MsG0380013439.01	MsG0480023670.01	0.808249	3.397652e-50	1.933197e-47
MsG0380013439.01	MsG0580024157.01	0.816256	6.074636e-52	4.283206e-49
MsG0380013439.01	MsG0580025206.01	0.800523	1.384782e-48	6.461779e-46
MsG0380013439.01	MsG0680030656.01	0.801810	7.553450e-49	3.641397e-46
MsG0380013439.01	MsG0680030677.01	0.800567	1.356276e-48	6.335871e-46
MsG0380013439.01	MsG0680035764.01	0.803009	4.276735e-49	2.125514e-46

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PPI

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Gene1	Gene2	Type
MsG0380013439.01	MsG0580029897.01	PPI
MsG0380014388.01	MsG0380013439.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013439.01.T01	MTR_5g089720	62.850	428	130	8	8	422	26	437	3.64e-174	494
MsG0380013439.01.T01	MTR_5g094340	36.891	431	184	14	14	422	53	417	5.66e-75	240
MsG0380013439.01.T01	MTR_3g055960	49.738	191	93	2	14	201	54	244	5.94e-58	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013439.01.T01	AT5G12300	64.677	201	57	4	15	206	19	214	4.18e-84	262
MsG0380013439.01.T01	AT1G50570	35.714	420	190	8	15	422	37	388	1.62e-70	228
MsG0380013439.01.T01	AT1G50570	35.714	420	190	8	15	422	37	388	1.62e-70	228
MsG0380013439.01.T01	AT5G55530	53.403	191	80	3	17	201	51	238	9.36e-63	208
MsG0380013439.01.T01	AT5G55530	53.403	191	80	3	17	201	51	238	9.36e-63	208
MsG0380013439.01.T01	AT5G55530	53.403	191	80	3	17	201	51	238	9.36e-63	208

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Find 44 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGACGAATATTGAT+AGG	0.461835	3:+38031836	MsG0380013439.01.T01:CDS
AACTGAGACTAACACATTGA+AGG	0.447563	3:-38031713	None:intergenic
AATATAGAAGCTGCAAAATT+CGG	0.391192	3:+38031859	MsG0380013439.01.T01:CDS
AATCATGATAATCAAAATCA+AGG	0.499360	3:+38032030	MsG0380013439.01.T01:CDS
AATCTTATGGTTCTGTTTCA+AGG	0.305198	3:+38031485	MsG0380013439.01.T01:CDS
ACAAGAATCATCAATAAAGG+TGG	0.583060	3:+38031046	MsG0380013439.01.T01:CDS
AGAATCATGAGTCCATTTCT+AGG	0.384976	3:+38031596	MsG0380013439.01.T01:CDS
AGAGCTTGAAAACCTAGAAA+TGG	0.425833	3:-38031608	None:intergenic
AGCGATGATAGAAACACGAA+CGG	0.692429	3:+38031646	MsG0380013439.01.T01:CDS
ATTTCACAGTCAACATCTTG+AGG	0.577410	3:-38031553	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACGAGACGAATATTGAT+AGG	+	Chr3:38031836-38031855	MsG0380013439.01.T01:CDS	30.0%
ACAAGAATCATCAATAAAGG+TGG	+	Chr3:38031046-38031065	MsG0380013439.01.T01:CDS	30.0%
ACCGATAAGAAGAAAAATGA+CGG	+	Chr3:38032090-38032109	MsG0380013439.01.T01:CDS	30.0%
CGAAACTAGAGATGAAAAAA+AGG	+	Chr3:38031792-38031811	MsG0380013439.01.T01:CDS	30.0%
GATTATCATGATTGTGATCA+AGG	-	Chr3:38032023-38032042	None:intergenic	30.0%
TGAATTTCCTGATATCAATG+CGG	+	Chr3:38031420-38031439	MsG0380013439.01.T01:CDS	30.0%
AACTGAGACTAACACATTGA+AGG	-	Chr3:38031716-38031735	None:intergenic	35.0%
AGAATCATGAGTCCATTTCT+AGG	+	Chr3:38031596-38031615	MsG0380013439.01.T01:CDS	35.0%
AGAGCTTGAAAACCTAGAAA+TGG	-	Chr3:38031611-38031630	None:intergenic	35.0%
ATTTCACAGTCAACATCTTG+AGG	-	Chr3:38031556-38031575	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	38030881	38032149	38030881	ID=MsG0380013439.01;Name=MsG0380013439.01
Chr3	mRNA	38030881	38032149	38030881	ID=MsG0380013439.01.T01;Parent=MsG0380013439.01;Name=MsG0380013439.01.T01;_AED=0.19;_eAED=0.19;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|422
Chr3	exon	38030881	38032149	38030881	ID=MsG0380013439.01.T01:exon:26881;Parent=MsG0380013439.01.T01
Chr3	CDS	38030881	38032149	38030881	ID=MsG0380013439.01.T01:cds;Parent=MsG0380013439.01.T01

Gene Sequence

>MsG0380013439.01.T01

ATGAACCATTTAGATGATAATGATAATGATGATGATGTTGAGTTTTCAGGTTTTCTTGATATATATGTTCATCATGCTAAGAATATTCATAACATATGCATATATGATAATCAAGATGTGTATGCAAAATTCTCTCTTACTTACAACCCTGATGAAACGCTCTCTACAAGAATCATCAATAAAGGTGGAAAAAATCCAATTTTCAATCAAAATTTAAGGGTGAAGATTGTTCAAATTGATGCTGTTTTAAAATGTGAGCTTTGGATGTTTAGTAGATCAAGAAATCACTTAGAAGATCAACTTTTAGGGTTTGCTTTGGTTCCAATTTCTAAAGTTTTTGGTAAAGGAAAAGTGACTGAAGATTATAGTCTCTCTTCCACTGATCTTTTTCATTCTCCAGCTGGAACTGTTCAATTAACTCTTTCATTAGATACATCTTTTCCAATCAATTCGACTTTGAGTTCGAAACCACAATCGGGTACTAATTCATCGATATCTTCTGAAGTTGTTTTGCTTGATCCAATTGAGTATTCTAGAATTGAATTTCCTGATATCAATGCGGCTAATGAGAATCAGAAAATGGTTTGTGAGTACTTCGATTTGGAATCTTATGGTTCTGTTTCAAGGCCTAATTCAATAGGATCGTTGCCGTTTCTTCAACTTAGCGGTTCTCCTCAAGATGTTGACTGTGAAATGACAATGAATTCGTCAGGTGAGAATCATGAGTCCATTTCTAGGTTTTCAAGCTCTACTACTACAAGCTTAAGCGATGATAGAAACACGAACGGTTCTGTTGCGATAAAGAGTAATTTGAGAGGTGACTTGTCAAATTCCTTCAATGTGTTAGTCTCAGTTGAAAGTAATCAGAATTCTTGTGTTTCTCCAGATACTCCAACTTCCAAGGAAGAAAGCGAAACTAGAGATGAAAAAAAGGAGTTAAAGTTCTCAACCAAGGAAAACGAGACGAATATTGATAGGAATATAGAAGCTGCAAAATTCGGTCAAGTTTTTTCTGTTCCGCCACAAAATATCGATATGGAGGCTGAGCAATCTTCTATGCAGAAGCAAATAGTTGACATGTATATGAGAAGTATGCATCAATTCACCGAGTCTTTGGCGAAAATGAAGCTACCAATGGACCTTGATCACAATCATGATAATCAAAATCAAGGTGATGTAATTCAAAATCATAAGGATACCAGATTAGAGACCGATAAGAAGAAAAATGACGGGTCGCGCGTGTTTTATGGTAGTCGAGCGTTCTTCTAG

Protein sequence

>MsG0380013439.01.T01

MNHLDDNDNDDDVEFSGFLDIYVHHAKNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINKGGKNPIFNQNLRVKIVQIDAVLKCELWMFSRSRNHLEDQLLGFALVPISKVFGKGKVTEDYSLSSTDLFHSPAGTVQLTLSLDTSFPINSTLSSKPQSGTNSSISSEVVLLDPIEYSRIEFPDINAANENQKMVCEYFDLESYGSVSRPNSIGSLPFLQLSGSPQDVDCEMTMNSSGENHESISRFSSSTTTSLSDDRNTNGSVAIKSNLRGDLSNSFNVLVSVESNQNSCVSPDTPTSKEESETRDEKKELKFSTKENETNIDRNIEAAKFGQVFSVPPQNIDMEAEQSSMQKQIVDMYMRSMHQFTESLAKMKLPMDLDHNHDNQNQGDVIQNHKDTRLETDKKKNDGSRVFYGSRAFF*