Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014388.01.T01 | XP_003600249.2 | 97.917 | 432 | 7 | 2 | 1 | 432 | 3 | 432 | 0 | 858 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014388.01.T01 | G7J1I7 | 97.917 | 432 | 7 | 2 | 1 | 432 | 3 | 432 | 0.0 | 858 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048202.01 | MsG0380014388.01 | 0.835413 | 1.702682e-56 | 2.080642e-53 |
| MsG0180000172.01 | MsG0380014388.01 | 0.857686 | 1.377925e-62 | 3.429427e-59 |
| MsG0180001116.01 | MsG0380014388.01 | -0.812177 | 4.833449e-51 | 3.051663e-48 |
| MsG0180002099.01 | MsG0380014388.01 | -0.821153 | 4.696538e-53 | 3.790814e-50 |
| MsG0180003731.01 | MsG0380014388.01 | 0.842012 | 3.351774e-58 | 5.014168e-55 |
| MsG0180004773.01 | MsG0380014388.01 | -0.817760 | 2.789484e-52 | 2.049536e-49 |
| MsG0180005272.01 | MsG0380014388.01 | 0.820186 | 7.834602e-53 | 6.156264e-50 |
| MsG0180005328.01 | MsG0380014388.01 | 0.800419 | 1.454132e-48 | 6.767857e-46 |
| MsG0180006227.01 | MsG0380014388.01 | -0.803837 | 2.880901e-49 | 1.462690e-46 |
| MsG0280010944.01 | MsG0380014388.01 | 0.865336 | 6.356776e-65 | 2.060610e-61 |
| MsG0380014388.01 | MsG0380014639.01 | -0.822502 | 2.288477e-53 | 1.919035e-50 |
| MsG0380014388.01 | MsG0380016801.01 | 0.804728 | 1.878922e-49 | 9.761259e-47 |
| MsG0380014388.01 | MsG0380018024.01 | 0.812874 | 3.403660e-51 | 2.188989e-48 |
| MsG0380014388.01 | MsG0480018202.01 | -0.800142 | 1.655816e-48 | 7.652167e-46 |
| MsG0380014388.01 | MsG0480019017.01 | 0.802210 | 6.251026e-49 | 3.044223e-46 |
| MsG0380014388.01 | MsG0480023695.01 | -0.804818 | 1.799513e-49 | 9.370473e-47 |
| MsG0380014388.01 | MsG0580024398.01 | 0.830191 | 3.374766e-55 | 3.530476e-52 |
| MsG0380014388.01 | MsG0580025746.01 | 0.825089 | 5.668230e-54 | 5.115771e-51 |
| MsG0380014388.01 | MsG0680030315.01 | 0.801618 | 8.269341e-49 | 3.967024e-46 |
| MsG0380014388.01 | MsG0780035993.01 | 0.808083 | 3.687069e-50 | 2.088543e-47 |
| MsG0380014388.01 | MsG0780036843.01 | 0.804688 | 1.915331e-49 | 9.939714e-47 |
| MsG0380014388.01 | MsG0880045054.01 | 0.801458 | 8.919614e-49 | 4.261776e-46 |
| MsG0380014388.01 | MsG0880045683.01 | 0.838871 | 2.222210e-57 | 3.016023e-54 |
| MsG0280006883.01 | MsG0380014388.01 | 0.819333 | 1.227335e-52 | 9.416030e-50 |
| MsG0280007052.01 | MsG0380014388.01 | 0.818247 | 2.165978e-52 | 1.612661e-49 |
| MsG0280007896.01 | MsG0380014388.01 | 0.807995 | 3.849883e-50 | 2.175678e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380014388.01 | MsG0380013439.01 | PPI |
| MsG0380014388.01 | MsG0580029622.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014388.01.T01 | MTR_3g055960 | 97.917 | 432 | 7 | 2 | 1 | 432 | 3 | 432 | 0.0 | 858 |
| MsG0380014388.01.T01 | MTR_5g094340 | 73.041 | 434 | 98 | 8 | 1 | 432 | 1 | 417 | 0.0 | 612 |
| MsG0380014388.01.T01 | MTR_5g089720 | 37.470 | 419 | 210 | 9 | 53 | 432 | 32 | 437 | 3.78e-83 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014388.01.T01 | AT5G55530 | 56.881 | 436 | 153 | 9 | 1 | 432 | 1 | 405 | 1.14e-157 | 451 |
| MsG0380014388.01.T01 | AT5G55530 | 56.881 | 436 | 153 | 9 | 1 | 432 | 1 | 405 | 1.14e-157 | 451 |
| MsG0380014388.01.T01 | AT5G55530 | 56.881 | 436 | 153 | 9 | 1 | 432 | 1 | 405 | 1.14e-157 | 451 |
| MsG0380014388.01.T01 | AT1G50570 | 54.156 | 397 | 148 | 10 | 40 | 432 | 22 | 388 | 1.87e-125 | 369 |
| MsG0380014388.01.T01 | AT1G50570 | 54.156 | 397 | 148 | 10 | 40 | 432 | 22 | 388 | 1.87e-125 | 369 |
| MsG0380014388.01.T01 | AT5G12300 | 46.154 | 195 | 88 | 5 | 56 | 241 | 21 | 207 | 1.61e-53 | 183 |
| MsG0380014388.01.T01 | AT5G12300 | 44.872 | 78 | 28 | 2 | 370 | 432 | 297 | 374 | 4.42e-12 | 67.8 |
Find 101 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAACTTGTTCATGATTT+GGG | 0.195292 | 3:-53962642 | None:intergenic |
| CCTGAAACTTGTTCATGATT+TGG | 0.219185 | 3:-53962643 | None:intergenic |
| CAATCTTCGTCTCAATGTTT+TGG | 0.227735 | 3:+53962006 | MsG0380014388.01.T01:CDS |
| CTTTCTCTAGTTTACCATTC+TGG | 0.234179 | 3:-53962138 | None:intergenic |
| CCAAATCATGAACAAGTTTC+AGG | 0.245310 | 3:+53962643 | MsG0380014388.01.T01:CDS |
| GTCTCTACTAAGACCATTAA+TGG | 0.256641 | 3:+53961956 | MsG0380014388.01.T01:CDS |
| GATCTGTTTCATTCTCCTTC+AGG | 0.261707 | 3:+53962181 | MsG0380014388.01.T01:CDS |
| TTAATGGTTTCAGAATATTT+TGG | 0.269481 | 3:+53962382 | MsG0380014388.01.T01:CDS |
| TGGTCTTCGTTTGCAATCTT+AGG | 0.278614 | 3:-53962358 | None:intergenic |
| TGCAAACGAAGACCACTTAA+TGG | 0.284606 | 3:+53962366 | MsG0380014388.01.T01:CDS |
| ATTGACTTCAATGTCCTTAG+AGG | 0.297181 | 3:-53961783 | None:intergenic |
| GTTCCTTCCACCTCCATTAA+TGG | 0.307297 | 3:-53961969 | None:intergenic |
| TGAGTCATTGGCCAGAGATT+TGG | 0.310125 | 3:+53962315 | MsG0380014388.01.T01:CDS |
| TGCTGAACCATCTGCGGCTC+TGG | 0.358153 | 3:-53962772 | None:intergenic |
| CGGTGCTACACCTGATGTTA+TGG | 0.365739 | 3:+53962231 | MsG0380014388.01.T01:CDS |
| TCGTTTGCAATCTTAGGATC+TGG | 0.377435 | 3:-53962352 | None:intergenic |
| AAGCAACGGTCCTTCCTCTA+AGG | 0.393297 | 3:+53961769 | MsG0380014388.01.T01:CDS |
| CCAAGCAGTGTGTCAACAAA+TGG | 0.396904 | 3:+53962556 | MsG0380014388.01.T01:CDS |
| GAAAGTGAACCAACTACTTC+AGG | 0.397702 | 3:+53962874 | MsG0380014388.01.T01:CDS |
| CTTGAATTTCCTGAAGTAGT+TGG | 0.407339 | 3:-53962883 | None:intergenic |
| CCCTTTAGAACCTCAGTCTT+GGG | 0.408315 | 3:+53961707 | MsG0380014388.01.T01:CDS |
| TTAGTAGAGACACTGTTCTC+TGG | 0.427254 | 3:-53961944 | None:intergenic |
| TTCACAGTCACAACAGGCTT+AGG | 0.428362 | 3:-53962742 | None:intergenic |
| TCTAAGGACATTGAAGTCAA+TGG | 0.431544 | 3:+53961785 | MsG0380014388.01.T01:CDS |
| GTGAGTTATGGATGCTTAGC+AGG | 0.442760 | 3:+53962050 | MsG0380014388.01.T01:CDS |
| CTCGGAAACATGTGAGTCAT+TGG | 0.443554 | 3:+53962303 | MsG0380014388.01.T01:CDS |
| TTGTTCATGATTTGGGGACT+TGG | 0.443994 | 3:-53962635 | None:intergenic |
| CATCTCTCAAATGTGAGTTA+TGG | 0.448295 | 3:+53962038 | MsG0380014388.01.T01:CDS |
| TGTTCTCTGGATTACTTGTC+AGG | 0.449342 | 3:-53961931 | None:intergenic |
| CCCAAGACTGAGGTTCTAAA+GGG | 0.451045 | 3:-53961707 | None:intergenic |
| CAAGCAGTGTGTCAACAAAT+GGG | 0.452081 | 3:+53962557 | MsG0380014388.01.T01:CDS |
| GCTCGATGTTTATATACATC+AGG | 0.456152 | 3:+53961850 | MsG0380014388.01.T01:CDS |
| GACTCAGTGCTCTGATAGCT+TGG | 0.460570 | 3:+53962420 | MsG0380014388.01.T01:CDS |
| TATCTTGAAGATCAGTTGCT+TGG | 0.461888 | 3:+53962082 | MsG0380014388.01.T01:CDS |
| CTAAGGACATTGAAGTCAAT+GGG | 0.464490 | 3:+53961786 | MsG0380014388.01.T01:CDS |
| ACCCTTTAGAACCTCAGTCT+TGG | 0.466024 | 3:+53961706 | MsG0380014388.01.T01:CDS |
| TCAATATTCACAGTCACAAC+AGG | 0.469854 | 3:-53962748 | None:intergenic |
| ACCCAAGACTGAGGTTCTAA+AGG | 0.472225 | 3:-53961708 | None:intergenic |
| GGAAGCTGGTGTTCGTCTTG+TGG | 0.480983 | 3:+53962471 | MsG0380014388.01.T01:CDS |
| TGATGCTGAAAATCATAGTT+CGG | 0.482073 | 3:+53962450 | MsG0380014388.01.T01:CDS |
| ATCTGCTATGCCGGGGAAAG+TGG | 0.488327 | 3:+53962258 | MsG0380014388.01.T01:CDS |
| TGTGCAAGTGGAACCTCCTA+AGG | 0.488557 | 3:+53962522 | MsG0380014388.01.T01:CDS |
| TATGGCAATATCTGCTATGC+CGG | 0.490303 | 3:+53962249 | MsG0380014388.01.T01:CDS |
| TAGAACCTCAGTCTTGGGTG+AGG | 0.492450 | 3:+53961712 | MsG0380014388.01.T01:CDS |
| GGCTTAGGGAATAAATCATT+CGG | 0.497719 | 3:-53962727 | None:intergenic |
| CTTGGTGGAGACTCAACCTT+AGG | 0.499060 | 3:-53962538 | None:intergenic |
| GCAGATATTGCCATAACATC+AGG | 0.499230 | 3:-53962241 | None:intergenic |
| ATGGCAATATCTGCTATGCC+GGG | 0.503138 | 3:+53962250 | MsG0380014388.01.T01:CDS |
| TCACAGTCACAACAGGCTTA+GGG | 0.508245 | 3:-53962741 | None:intergenic |
| CCATTTGTTGACACACTGCT+TGG | 0.508653 | 3:-53962556 | None:intergenic |
| AATATTCTGAAACCATTAAG+TGG | 0.510085 | 3:-53962378 | None:intergenic |
| AGAGCCGCAGATGGTTCAGC+AGG | 0.512099 | 3:+53962774 | MsG0380014388.01.T01:CDS |
| GAAAATCATAGTTCGGAAGC+TGG | 0.519872 | 3:+53962457 | MsG0380014388.01.T01:CDS |
| AGCGAAAATGAAGCTTCCTA+TGG | 0.519913 | 3:+53962846 | MsG0380014388.01.T01:CDS |
| GGGTTAGCGTTCTTAGTTTG+CGG | 0.519999 | 3:-53962922 | None:intergenic |
| AGGGTGATACAACAGATTGT+GGG | 0.523722 | 3:-53961688 | None:intergenic |
| AAGGGTGATACAACAGATTG+TGG | 0.527553 | 3:-53961689 | None:intergenic |
| ACTAAGACCATTAATGGAGG+TGG | 0.529485 | 3:+53961962 | MsG0380014388.01.T01:CDS |
| ACATGTGTAGCCACTTTCCC+CGG | 0.538816 | 3:-53962268 | None:intergenic |
| GGCTACACATGTCACTCAGC+AGG | 0.540185 | 3:+53962279 | MsG0380014388.01.T01:CDS |
| ATGTTTATATACATCAGGCT+AGG | 0.540326 | 3:+53961855 | MsG0380014388.01.T01:CDS |
| CTCTGCTTCCATAATAGACA+CGG | 0.542849 | 3:-53962945 | None:intergenic |
| GGTGGAGACTCAACCTTAGG+AGG | 0.548492 | 3:-53962535 | None:intergenic |
| TGAAACTTGTTCATGATTTG+GGG | 0.550211 | 3:-53962641 | None:intergenic |
| GGTTCACTTTCAATGTCCAT+AGG | 0.554954 | 3:-53962862 | None:intergenic |
| TCTGAGCTTTCATGAGCAGA+AGG | 0.558176 | 3:-53962589 | None:intergenic |
| CGAAGATTGTCGTTAAACAC+AGG | 0.561622 | 3:-53961992 | None:intergenic |
| TTTGTTGACACACTGCTTGG+TGG | 0.562603 | 3:-53962553 | None:intergenic |
| TAGCATAAACATCTTGCTTG+TGG | 0.568663 | 3:-53961901 | None:intergenic |
| GAGCACTCCAACGCATTCCT+CGG | 0.573851 | 3:-53961831 | None:intergenic |
| ACTTCAATGTCCTTAGAGGA+AGG | 0.576019 | 3:-53961779 | None:intergenic |
| TGTAGCACCGGTGTAAGCAA+TGG | 0.580116 | 3:-53962218 | None:intergenic |
| CAATTGTCCATTGCTTACAC+CGG | 0.580933 | 3:+53962211 | MsG0380014388.01.T01:CDS |
| TGTTTATATACATCAGGCTA+GGG | 0.582616 | 3:+53961856 | MsG0380014388.01.T01:CDS |
| GGAAGGACCGTTGCTTTGTG+TGG | 0.589066 | 3:-53961762 | None:intergenic |
| AGAACCTCAGTCTTGGGTGA+GGG | 0.590332 | 3:+53961713 | MsG0380014388.01.T01:CDS |
| CAGTGGTGAGTCTGTGCAAG+TGG | 0.593745 | 3:+53962510 | MsG0380014388.01.T01:CDS |
| AACTATCATGTCAAATGCCG+AGG | 0.594132 | 3:+53961814 | MsG0380014388.01.T01:CDS |
| ACATGTCACTCAGCAGGACT+CGG | 0.594812 | 3:+53962285 | MsG0380014388.01.T01:CDS |
| TCAAATGCCGAGGAATGCGT+TGG | 0.596916 | 3:+53961824 | MsG0380014388.01.T01:CDS |
| GGACATTGAAGTCAATGGGA+AGG | 0.601234 | 3:+53961790 | MsG0380014388.01.T01:CDS |
| CATAACATCAGGTGTAGCAC+CGG | 0.601546 | 3:-53962230 | None:intergenic |
| TCAGAAGTGCTAGTCCAGAA+TGG | 0.601594 | 3:+53962124 | MsG0380014388.01.T01:CDS |
| TCTGCTTCCATAATAGACAC+GGG | 0.601885 | 3:-53962944 | None:intergenic |
| GACAATTGAACAAAACCTGA+AGG | 0.605270 | 3:-53962196 | None:intergenic |
| TATTGAGCCAGAGCCGCAGA+TGG | 0.613301 | 3:+53962765 | MsG0380014388.01.T01:CDS |
| ATATCCTGCTGAACCATCTG+CGG | 0.615970 | 3:-53962778 | None:intergenic |
| ATCATTCGGAACAACACTTG+AGG | 0.622134 | 3:-53962713 | None:intergenic |
| TGGACTAGCACTTCTGACAA+TGG | 0.624686 | 3:-53962118 | None:intergenic |
| CTGCTTCCATAATAGACACG+GGG | 0.629788 | 3:-53962943 | None:intergenic |
| GGGTGATACAACAGATTGTG+GGG | 0.631149 | 3:-53961687 | None:intergenic |
| AGACCATTAATGGAGGTGGA+AGG | 0.648853 | 3:+53961966 | MsG0380014388.01.T01:CDS |
| TGGCAATATCTGCTATGCCG+GGG | 0.667680 | 3:+53962251 | MsG0380014388.01.T01:CDS |
| CTCACCCTCACCCAAGACTG+AGG | 0.674424 | 3:-53961717 | None:intergenic |
| AAGCAGTGTGTCAACAAATG+GGG | 0.677994 | 3:+53962558 | MsG0380014388.01.T01:CDS |
| GATGTTACCACACAAAGCAA+CGG | 0.679929 | 3:+53961755 | MsG0380014388.01.T01:CDS |
| GAAGATTGTCGTTAAACACA+GGG | 0.680691 | 3:-53961991 | None:intergenic |
| TCTACTAAGACCATTAATGG+AGG | 0.690612 | 3:+53961959 | MsG0380014388.01.T01:CDS |
| GAAAGCTTCTCAGCATGCAG+TGG | 0.698296 | 3:+53962493 | MsG0380014388.01.T01:CDS |
| TGAGTTATGGATGCTTAGCA+GGG | 0.699595 | 3:+53962051 | MsG0380014388.01.T01:CDS |
| TGCTTCCATAATAGACACGG+GGG | 0.772529 | 3:-53962942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATGGTTTCAGAATATTT+TGG | + | Chr3:53962382-53962401 | MsG0380014388.01.T01:CDS | 20.0% |
| ! | AACCAAAGAAGTAAAAAAAG+TGG | + | Chr3:53962666-53962685 | MsG0380014388.01.T01:CDS | 25.0% |
| !!! | AATATTCTGAAACCATTAAG+TGG | - | Chr3:53962381-53962400 | None:intergenic | 25.0% |
| ATGTTTATATACATCAGGCT+AGG | + | Chr3:53961855-53961874 | MsG0380014388.01.T01:CDS | 30.0% | |
| TGATGCTGAAAATCATAGTT+CGG | + | Chr3:53962450-53962469 | MsG0380014388.01.T01:CDS | 30.0% | |
| TGTTTATATACATCAGGCTA+GGG | + | Chr3:53961856-53961875 | MsG0380014388.01.T01:CDS | 30.0% | |
| ! | CTCAATTTTATCCAAATCTC+TGG | - | Chr3:53962329-53962348 | None:intergenic | 30.0% |
| ! | CTGAAACTTGTTCATGATTT+GGG | - | Chr3:53962645-53962664 | None:intergenic | 30.0% |
| ! | TGAAACTTGTTCATGATTTG+GGG | - | Chr3:53962644-53962663 | None:intergenic | 30.0% |
| !!! | GTCCACTTTTTTTACTTCTT+TGG | - | Chr3:53962671-53962690 | None:intergenic | 30.0% |
| AAAAAAGTGGACGTCAAAGA+CGG | + | Chr3:53962679-53962698 | MsG0380014388.01.T01:CDS | 35.0% | |
| CATCTCTCAAATGTGAGTTA+TGG | + | Chr3:53962038-53962057 | MsG0380014388.01.T01:CDS | 35.0% | |
| CCAAATCATGAACAAGTTTC+AGG | + | Chr3:53962643-53962662 | MsG0380014388.01.T01:CDS | 35.0% | |
| CTAAGGACATTGAAGTCAAT+GGG | + | Chr3:53961786-53961805 | MsG0380014388.01.T01:CDS | 35.0% | |
| CTTGAATTTCCTGAAGTAGT+TGG | - | Chr3:53962886-53962905 | None:intergenic | 35.0% | |
| GAAGATTGTCGTTAAACACA+GGG | - | Chr3:53961994-53962013 | None:intergenic | 35.0% | |
| GACAATTGAACAAAACCTGA+AGG | - | Chr3:53962199-53962218 | None:intergenic | 35.0% | |
| GCTCGATGTTTATATACATC+AGG | + | Chr3:53961850-53961869 | MsG0380014388.01.T01:CDS | 35.0% | |
| GGCTTAGGGAATAAATCATT+CGG | - | Chr3:53962730-53962749 | None:intergenic | 35.0% | |
| GTCTCTACTAAGACCATTAA+TGG | + | Chr3:53961956-53961975 | MsG0380014388.01.T01:CDS | 35.0% | |
| TAGCATAAACATCTTGCTTG+TGG | - | Chr3:53961904-53961923 | None:intergenic | 35.0% | |
| TATCTTGAAGATCAGTTGCT+TGG | + | Chr3:53962082-53962101 | MsG0380014388.01.T01:CDS | 35.0% | |
| TCAATATTCACAGTCACAAC+AGG | - | Chr3:53962751-53962770 | None:intergenic | 35.0% | |
| TCTAAGGACATTGAAGTCAA+TGG | + | Chr3:53961785-53961804 | MsG0380014388.01.T01:CDS | 35.0% | |
| TCTACTAAGACCATTAATGG+AGG | + | Chr3:53961959-53961978 | MsG0380014388.01.T01:CDS | 35.0% | |
| ! | ATTGACTTCAATGTCCTTAG+AGG | - | Chr3:53961786-53961805 | None:intergenic | 35.0% |
| ! | CAATCTTCGTCTCAATGTTT+TGG | + | Chr3:53962006-53962025 | MsG0380014388.01.T01:CDS | 35.0% |
| ! | CCTGAAACTTGTTCATGATT+TGG | - | Chr3:53962646-53962665 | None:intergenic | 35.0% |
| ! | CTTTCTCTAGTTTACCATTC+TGG | - | Chr3:53962141-53962160 | None:intergenic | 35.0% |
| AACTATCATGTCAAATGCCG+AGG | + | Chr3:53961814-53961833 | MsG0380014388.01.T01:CDS | 40.0% | |
| AAGCAGTGTGTCAACAAATG+GGG | + | Chr3:53962558-53962577 | MsG0380014388.01.T01:CDS | 40.0% | |
| AAGGGTGATACAACAGATTG+TGG | - | Chr3:53961692-53961711 | None:intergenic | 40.0% | |
| ACTAAGACCATTAATGGAGG+TGG | + | Chr3:53961962-53961981 | MsG0380014388.01.T01:CDS | 40.0% | |
| ACTTCAATGTCCTTAGAGGA+AGG | - | Chr3:53961782-53961801 | None:intergenic | 40.0% | |
| AGCGAAAATGAAGCTTCCTA+TGG | + | Chr3:53962846-53962865 | MsG0380014388.01.T01:CDS | 40.0% | |
| AGGGTGATACAACAGATTGT+GGG | - | Chr3:53961691-53961710 | None:intergenic | 40.0% | |
| ATCATTCGGAACAACACTTG+AGG | - | Chr3:53962716-53962735 | None:intergenic | 40.0% | |
| CAAGCAGTGTGTCAACAAAT+GGG | + | Chr3:53962557-53962576 | MsG0380014388.01.T01:CDS | 40.0% | |
| CAATTGTCCATTGCTTACAC+CGG | + | Chr3:53962211-53962230 | MsG0380014388.01.T01:CDS | 40.0% | |
| CGAAGATTGTCGTTAAACAC+AGG | - | Chr3:53961995-53962014 | None:intergenic | 40.0% | |
| CTCTGCTTCCATAATAGACA+CGG | - | Chr3:53962948-53962967 | None:intergenic | 40.0% | |
| GAAAATCATAGTTCGGAAGC+TGG | + | Chr3:53962457-53962476 | MsG0380014388.01.T01:CDS | 40.0% | |
| GAAAGTGAACCAACTACTTC+AGG | + | Chr3:53962874-53962893 | MsG0380014388.01.T01:CDS | 40.0% | |
| GATCTGTTTCATTCTCCTTC+AGG | + | Chr3:53962181-53962200 | MsG0380014388.01.T01:CDS | 40.0% | |
| GATGTTACCACACAAAGCAA+CGG | + | Chr3:53961755-53961774 | MsG0380014388.01.T01:CDS | 40.0% | |
| GCAGATATTGCCATAACATC+AGG | - | Chr3:53962244-53962263 | None:intergenic | 40.0% | |
| GGTTCACTTTCAATGTCCAT+AGG | - | Chr3:53962865-53962884 | None:intergenic | 40.0% | |
| TATGGCAATATCTGCTATGC+CGG | + | Chr3:53962249-53962268 | MsG0380014388.01.T01:CDS | 40.0% | |
| TCGTTTGCAATCTTAGGATC+TGG | - | Chr3:53962355-53962374 | None:intergenic | 40.0% | |
| TCTGCTTCCATAATAGACAC+GGG | - | Chr3:53962947-53962966 | None:intergenic | 40.0% | |
| TGAGTTATGGATGCTTAGCA+GGG | + | Chr3:53962051-53962070 | MsG0380014388.01.T01:CDS | 40.0% | |
| TGCAAACGAAGACCACTTAA+TGG | + | Chr3:53962366-53962385 | MsG0380014388.01.T01:CDS | 40.0% | |
| TGGTCTTCGTTTGCAATCTT+AGG | - | Chr3:53962361-53962380 | None:intergenic | 40.0% | |
| TGTTCTCTGGATTACTTGTC+AGG | - | Chr3:53961934-53961953 | None:intergenic | 40.0% | |
| TTAGTAGAGACACTGTTCTC+TGG | - | Chr3:53961947-53961966 | None:intergenic | 40.0% | |
| ! | TTGTTCATGATTTGGGGACT+TGG | - | Chr3:53962638-53962657 | None:intergenic | 40.0% |
| !!! | ATATTTTGGCATTTCGTGCG+AGG | + | Chr3:53962396-53962415 | MsG0380014388.01.T01:CDS | 40.0% |
| !!! | TCAGTTGCTTGGTTTTGCTT+TGG | + | Chr3:53962093-53962112 | MsG0380014388.01.T01:CDS | 40.0% |
| AGACCATTAATGGAGGTGGA+AGG | + | Chr3:53961966-53961985 | MsG0380014388.01.T01:CDS | 45.0% | |
| ATATCCTGCTGAACCATCTG+CGG | - | Chr3:53962781-53962800 | None:intergenic | 45.0% | |
| ATGGCAATATCTGCTATGCC+GGG | + | Chr3:53962250-53962269 | MsG0380014388.01.T01:CDS | 45.0% | |
| CATAACATCAGGTGTAGCAC+CGG | - | Chr3:53962233-53962252 | None:intergenic | 45.0% | |
| CCAAGCAGTGTGTCAACAAA+TGG | + | Chr3:53962556-53962575 | MsG0380014388.01.T01:CDS | 45.0% | |
| CTCGGAAACATGTGAGTCAT+TGG | + | Chr3:53962303-53962322 | MsG0380014388.01.T01:CDS | 45.0% | |
| CTGCTTCCATAATAGACACG+GGG | - | Chr3:53962946-53962965 | None:intergenic | 45.0% | |
| GGACATTGAAGTCAATGGGA+AGG | + | Chr3:53961790-53961809 | MsG0380014388.01.T01:CDS | 45.0% | |
| GGGTGATACAACAGATTGTG+GGG | - | Chr3:53961690-53961709 | None:intergenic | 45.0% | |
| GTGAGTTATGGATGCTTAGC+AGG | + | Chr3:53962050-53962069 | MsG0380014388.01.T01:CDS | 45.0% | |
| GTTCCTTCCACCTCCATTAA+TGG | - | Chr3:53961972-53961991 | None:intergenic | 45.0% | |
| TCACAGTCACAACAGGCTTA+GGG | - | Chr3:53962744-53962763 | None:intergenic | 45.0% | |
| TCTGAGCTTTCATGAGCAGA+AGG | - | Chr3:53962592-53962611 | None:intergenic | 45.0% | |
| TGAGTCATTGGCCAGAGATT+TGG | + | Chr3:53962315-53962334 | MsG0380014388.01.T01:CDS | 45.0% | |
| TGCTTCCATAATAGACACGG+GGG | - | Chr3:53962945-53962964 | None:intergenic | 45.0% | |
| TTCACAGTCACAACAGGCTT+AGG | - | Chr3:53962745-53962764 | None:intergenic | 45.0% | |
| TTTGTTGACACACTGCTTGG+TGG | - | Chr3:53962556-53962575 | None:intergenic | 45.0% | |
| ! | ACCCAAGACTGAGGTTCTAA+AGG | - | Chr3:53961711-53961730 | None:intergenic | 45.0% |
| ! | CCATTTGTTGACACACTGCT+TGG | - | Chr3:53962559-53962578 | None:intergenic | 45.0% |
| ! | GGGTTAGCGTTCTTAGTTTG+CGG | - | Chr3:53962925-53962944 | None:intergenic | 45.0% |
| !! | ACCCTTTAGAACCTCAGTCT+TGG | + | Chr3:53961706-53961725 | MsG0380014388.01.T01:CDS | 45.0% |
| !! | CCCAAGACTGAGGTTCTAAA+GGG | - | Chr3:53961710-53961729 | None:intergenic | 45.0% |
| !! | CCCTTTAGAACCTCAGTCTT+GGG | + | Chr3:53961707-53961726 | MsG0380014388.01.T01:CDS | 45.0% |
| !! | TCAGAAGTGCTAGTCCAGAA+TGG | + | Chr3:53962124-53962143 | MsG0380014388.01.T01:CDS | 45.0% |
| !! | TGGACTAGCACTTCTGACAA+TGG | - | Chr3:53962121-53962140 | None:intergenic | 45.0% |
| AAGCAACGGTCCTTCCTCTA+AGG | + | Chr3:53961769-53961788 | MsG0380014388.01.T01:CDS | 50.0% | |
| ACATGTCACTCAGCAGGACT+CGG | + | Chr3:53962285-53962304 | MsG0380014388.01.T01:CDS | 50.0% | |
| AGAACCTCAGTCTTGGGTGA+GGG | + | Chr3:53961713-53961732 | MsG0380014388.01.T01:CDS | 50.0% | |
| CTTGGTGGAGACTCAACCTT+AGG | - | Chr3:53962541-53962560 | None:intergenic | 50.0% | |
| GAAAGCTTCTCAGCATGCAG+TGG | + | Chr3:53962493-53962512 | MsG0380014388.01.T01:CDS | 50.0% | |
| GACTCAGTGCTCTGATAGCT+TGG | + | Chr3:53962420-53962439 | MsG0380014388.01.T01:CDS | 50.0% | |
| GCTAACCCCCGTGTCTATTA+TGG | + | Chr3:53962937-53962956 | MsG0380014388.01.T01:CDS | 50.0% | |
| TAGAACCTCAGTCTTGGGTG+AGG | + | Chr3:53961712-53961731 | MsG0380014388.01.T01:CDS | 50.0% | |
| TCAAATGCCGAGGAATGCGT+TGG | + | Chr3:53961824-53961843 | MsG0380014388.01.T01:CDS | 50.0% | |
| TGGCAATATCTGCTATGCCG+GGG | + | Chr3:53962251-53962270 | MsG0380014388.01.T01:CDS | 50.0% | |
| TGTGCAAGTGGAACCTCCTA+AGG | + | Chr3:53962522-53962541 | MsG0380014388.01.T01:CDS | 50.0% | |
| ! | ACATGTGTAGCCACTTTCCC+CGG | - | Chr3:53962271-53962290 | None:intergenic | 50.0% |
| !! | CGGTGCTACACCTGATGTTA+TGG | + | Chr3:53962231-53962250 | MsG0380014388.01.T01:CDS | 50.0% |
| !! | TGTAGCACCGGTGTAAGCAA+TGG | - | Chr3:53962221-53962240 | None:intergenic | 50.0% |
| ATCTGCTATGCCGGGGAAAG+TGG | + | Chr3:53962258-53962277 | MsG0380014388.01.T01:CDS | 55.0% | |
| CAGTGGTGAGTCTGTGCAAG+TGG | + | Chr3:53962510-53962529 | MsG0380014388.01.T01:CDS | 55.0% | |
| GAGCACTCCAACGCATTCCT+CGG | - | Chr3:53961834-53961853 | None:intergenic | 55.0% | |
| GGAAGCTGGTGTTCGTCTTG+TGG | + | Chr3:53962471-53962490 | MsG0380014388.01.T01:CDS | 55.0% | |
| GGCTACACATGTCACTCAGC+AGG | + | Chr3:53962279-53962298 | MsG0380014388.01.T01:CDS | 55.0% | |
| GGTGGAGACTCAACCTTAGG+AGG | - | Chr3:53962538-53962557 | None:intergenic | 55.0% | |
| TATTGAGCCAGAGCCGCAGA+TGG | + | Chr3:53962765-53962784 | MsG0380014388.01.T01:CDS | 55.0% | |
| ! | GGAAGGACCGTTGCTTTGTG+TGG | - | Chr3:53961765-53961784 | None:intergenic | 55.0% |
| AGAGCCGCAGATGGTTCAGC+AGG | + | Chr3:53962774-53962793 | MsG0380014388.01.T01:CDS | 60.0% | |
| CTCACCCTCACCCAAGACTG+AGG | - | Chr3:53961720-53961739 | None:intergenic | 60.0% | |
| TGCTGAACCATCTGCGGCTC+TGG | - | Chr3:53962775-53962794 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 53961680 | 53962978 | 53961680 | ID=MsG0380014388.01;Name=MsG0380014388.01 |
| Chr3 | mRNA | 53961680 | 53962978 | 53961680 | ID=MsG0380014388.01.T01;Parent=MsG0380014388.01;Name=MsG0380014388.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|432 |
| Chr3 | exon | 53961680 | 53962978 | 53961680 | ID=MsG0380014388.01.T01:exon:9987;Parent=MsG0380014388.01.T01 |
| Chr3 | CDS | 53961680 | 53962978 | 53961680 | ID=MsG0380014388.01.T01:cds;Parent=MsG0380014388.01.T01 |
| Gene Sequence |
| Protein sequence |
