AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011334.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011334.01.T01 MTR_2g102227 62.362 271 39 5 88 300 133 398 1.15e-89 276
MsG0280011334.01.T01 MTR_6g486270 46.875 96 48 2 208 300 162 257 1.62e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011334.01.T01 AT3G24490 35.484 155 83 3 157 299 65 214 1.83e-17 82.0

Find 69 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGATTAAGTTTCAAGATA+TGG 0.238032 2:-82532023 MsG0280011334.01.T01:CDS
TTCCCAAATGGCTGGGAATA+TGG 0.258167 2:+82532622 None:intergenic
GCAGCTGCTAAACGATCTTT+TGG 0.280531 2:-82532257 MsG0280011334.01.T01:CDS
TGGGTGGTGGAGATAGAAAA+TGG 0.290828 2:-82532003 MsG0280011334.01.T01:CDS
CATTTGTTCTTCTTGATGCT+TGG 0.296454 2:-82532197 MsG0280011334.01.T01:CDS
ATTTGTTCTTCTTGATGCTT+GGG 0.319429 2:-82532196 MsG0280011334.01.T01:CDS
TCTCCATATTCCCAGCCATT+TGG 0.360453 2:-82532625 MsG0280011334.01.T01:CDS
GACCGACAAAGCAAGGAATA+TGG 0.370680 2:-82532673 MsG0280011334.01.T01:CDS
CTCCATATTCCCAGCCATTT+GGG 0.375943 2:-82532624 MsG0280011334.01.T01:CDS
TGAAGATGAAGAGCGGTTAG+TGG 0.386218 2:-82532572 MsG0280011334.01.T01:CDS
GTCGTCACTTAGGTCAGCTT+TGG 0.386410 2:+82534526 None:intergenic
ATGCAAATTCACAGTTGGTT+TGG 0.402677 2:+82534549 None:intergenic
TTCTTGATGCTTGGGGTGAT+CGG 0.409344 2:-82532188 MsG0280011334.01.T01:intron
AACCATATTCCTTGCTTTGT+CGG 0.411249 2:+82532671 None:intergenic
TACCTTCATTCCCAAATGGC+TGG 0.417617 2:+82532614 None:intergenic
AAGATTAAGTTTCAAGATAT+GGG 0.423794 2:-82532022 MsG0280011334.01.T01:CDS
AACTTATGAATTTGCAGCTC+GGG 0.427130 2:-82532297 MsG0280011334.01.T01:CDS
TCCCAGCCATTTGGGAATGA+AGG 0.432109 2:-82532616 MsG0280011334.01.T01:CDS
TTTAGGATTCCCTTACTGAA+TGG 0.452287 2:-82532233 MsG0280011334.01.T01:CDS
GCAATCTCAAACACCCTTTG+AGG 0.460478 2:-82532981 MsG0280011334.01.T01:CDS
GTTTCAAAAGTTGAAAGAAC+GGG 0.463936 2:-82532097 MsG0280011334.01.T01:CDS
GGGTGGTGGAGATAGAAAAT+GGG 0.465027 2:-82532002 MsG0280011334.01.T01:CDS
CCTTCTCAGTCCATTCAGTA+AGG 0.479775 2:+82532223 None:intergenic
GCAGCTGCAGCTGACGGTGT+TGG 0.482446 2:+82532272 None:intergenic
TTGTTACCTTCATTCCCAAA+TGG 0.485652 2:+82532610 None:intergenic
CGGGTAGATTCATTTGCAGC+TGG 0.491062 2:+82532941 None:intergenic
TAATTCATCTTCATTCATCA+TGG 0.493258 2:+82532361 None:intergenic
CATCGACATGATCATAATCT+CGG 0.496049 2:+82532921 None:intergenic
ACCTTCATTCCCAAATGGCT+GGG 0.497851 2:+82532615 None:intergenic
TCCTCCTGAAAATACAGAAT+CGG 0.498451 2:-82531835 MsG0280011334.01.T01:CDS
GCATGATTTACATAAACTCC+AGG 0.504047 2:+82531884 None:intergenic
GACGATGAAGATCGGTTAGG+AGG 0.521555 2:-82532875 MsG0280011334.01.T01:CDS
AAGTTTCAAGATATGGGTGG+TGG 0.524195 2:-82532016 MsG0280011334.01.T01:CDS
TAGATTCATTTGCAGCTGGA+TGG 0.526073 2:+82532945 None:intergenic
TCTCTTGAGTTCGAACGACA+AGG 0.531751 2:+82531923 None:intergenic
TTCATTACTTGTCGTCACTT+AGG 0.533325 2:+82534516 None:intergenic
TTTGGATGCAAATTCACAGT+TGG 0.538528 2:+82534544 None:intergenic
AATATGAAGAATTCCTCAAA+GGG 0.539812 2:+82532968 None:intergenic
GGGAGTCTTGCTTGTTGTGG+TGG 0.550724 2:+82531944 None:intergenic
GTCGATGATGAAGATCAGTT+AGG 0.550883 2:-82532905 MsG0280011334.01.T01:CDS
TTTGTTCTTCTTGATGCTTG+GGG 0.554775 2:-82532195 MsG0280011334.01.T01:CDS
AGATGAAGAGCGGTTAGTGG+AGG 0.558472 2:-82532569 MsG0280011334.01.T01:CDS
ATCGACATGATCATAATCTC+GGG 0.559195 2:+82532922 None:intergenic
CGTTTAGCAGCTGCAGCTGA+CGG 0.562335 2:+82532266 None:intergenic
CTCTTGAGTTCGAACGACAA+GGG 0.566224 2:+82531924 None:intergenic
GATGATGAAGATCAGTTAGG+AGG 0.571101 2:-82532902 MsG0280011334.01.T01:CDS
GGTTTCAAAAGTTGAAAGAA+CGG 0.571460 2:-82532098 MsG0280011334.01.T01:CDS
AATGACGATGAAGATCGGTT+AGG 0.571987 2:-82532878 MsG0280011334.01.T01:CDS
TGTAAATCATGCAAATGAGA+TGG 0.574988 2:-82531873 MsG0280011334.01.T01:CDS
GAATATGAAGAATTCCTCAA+AGG 0.576504 2:+82532967 None:intergenic
ATGAAGACGATGACACCGAT+GGG 0.578930 2:-82532711 MsG0280011334.01.T01:CDS
GATGAAGACGATGACACCGA+TGG 0.583172 2:-82532712 MsG0280011334.01.T01:CDS
CAACTTATGAATTTGCAGCT+CGG 0.587886 2:-82532298 MsG0280011334.01.T01:CDS
CAAGGGAGTCTTGCTTGTTG+TGG 0.589582 2:+82531941 None:intergenic
CTTCTCAGTCCATTCAGTAA+GGG 0.589672 2:+82532224 None:intergenic
GAGGGAATGACGATGAAGAT+CGG 0.593801 2:-82532883 MsG0280011334.01.T01:CDS
AGGTAACAATGATGAGGATG+AGG 0.595624 2:-82532596 MsG0280011334.01.T01:CDS
AGTTGCAGAAAAGGTATCAG+TGG 0.596635 2:-82532119 MsG0280011334.01.T01:intron
TGACAATGACCGACAAAGCA+AGG 0.600398 2:-82532680 MsG0280011334.01.T01:CDS
ACGATGAAGATCGGTTAGGA+GGG 0.600690 2:-82532874 MsG0280011334.01.T01:CDS
CCTTACTGAATGGACTGAGA+AGG 0.603468 2:-82532223 MsG0280011334.01.T01:CDS
ATGATGAAGATCAGTTAGGA+GGG 0.607333 2:-82532901 MsG0280011334.01.T01:CDS
ATGAGGATGAAGATGAAGAG+CGG 0.612654 2:-82532579 MsG0280011334.01.T01:CDS
ATTAAGTTTCAAGATATGGG+TGG 0.645987 2:-82532019 MsG0280011334.01.T01:CDS
GAATGAAGGTAACAATGATG+AGG 0.691606 2:-82532602 MsG0280011334.01.T01:CDS
GAAGACGATGACACCGATGG+GGG 0.696635 2:-82532709 MsG0280011334.01.T01:CDS
GTTATCTGAAACATTCTGTG+AGG 0.703353 2:-82532651 MsG0280011334.01.T01:CDS
TGAAGACGATGACACCGATG+GGG 0.719428 2:-82532710 MsG0280011334.01.T01:CDS
TGAATGAAGATGAATTAGAG+TGG 0.724734 2:-82532355 MsG0280011334.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACCAAAATATTAATATATT+AGG + Chr2:82532739-82532758 None:intergenic 10.0%
!! ACCAAAATATTAATATATTA+GGG + Chr2:82532738-82532757 None:intergenic 10.0%
!! AAATGAAATTGAAATGAAAA+AGG + Chr2:82533037-82533056 None:intergenic 15.0%
!! AATTAAAAAAGATCAAAAGT+TGG + Chr2:82532529-82532548 None:intergenic 15.0%
!! ATTGAAGAAAAAATACAAAA+AGG - Chr2:82534348-82534367 MsG0280011334.01.T01:intron 15.0%
!! ATTGTTAACAATAATAATTG+AGG + Chr2:82532800-82532819 None:intergenic 15.0%
!! CCAAAATATTAATATATTAG+GGG + Chr2:82532737-82532756 None:intergenic 15.0%
!! GCAAAAAATAAAATGAAATT+AGG + Chr2:82533062-82533081 None:intergenic 15.0%
!! TTGTTAACAATAATAATTGA+GGG + Chr2:82532799-82532818 None:intergenic 15.0%
!!! ATTATGTTAAAGTTTCTTTT+AGG + Chr2:82532665-82532684 None:intergenic 15.0%
!!! TTATATTTTACTCATTTTAG+AGG - Chr2:82532549-82532568 MsG0280011334.01.T01:CDS 15.0%
!!! TTATGTTAAAGTTTCTTTTA+GGG + Chr2:82532664-82532683 None:intergenic 15.0%
!!! TTTTGGTTTAATTTCATTTT+TGG - Chr2:82532751-82532770 MsG0280011334.01.T01:intron 15.0%
!! AAGATTAAGTTTCAAGATAT+GGG - Chr2:82534373-82534392 MsG0280011334.01.T01:intron 20.0%
!!! AATTCACAAATATCCATTTT+TGG + Chr2:82533183-82533202 None:intergenic 20.0%
!!! CCCCTAATATATTAATATTT+TGG - Chr2:82532734-82532753 MsG0280011334.01.T01:intron 20.0%
!!! TATGTTAAAGTTTCTTTTAG+GGG + Chr2:82532663-82532682 None:intergenic 20.0%
! AATATGAAGAATTCCTCAAA+GGG + Chr2:82533430-82533449 None:intergenic 25.0%
! CAAGATTAAGTTTCAAGATA+TGG - Chr2:82534372-82534391 MsG0280011334.01.T01:intron 25.0%
! GTTCGATGATAATATTCTTA+CGG + Chr2:82532385-82532404 None:intergenic 25.0%
! TAATTCATCTTCATTCATCA+TGG + Chr2:82534037-82534056 None:intergenic 25.0%
! TGAAATTTAGATGAGATTGA+AGG + Chr2:82533008-82533027 None:intergenic 25.0%
! TGGATATTTGTGAATTGAAT+TGG - Chr2:82533187-82533206 MsG0280011334.01.T01:intron 25.0%
!! TTTTAACAATGTGCCTATAA+TGG + Chr2:82532486-82532505 None:intergenic 25.0%
!!! AAACGCAATTTTGATTTGAA+AGG + Chr2:82532968-82532987 None:intergenic 25.0%
!!! AACGCAATTTTGATTTGAAA+GGG + Chr2:82532967-82532986 None:intergenic 25.0%
!!! AATCAAAATTGCGTTTTTTC+AGG - Chr2:82532972-82532991 MsG0280011334.01.T01:CDS 25.0%
!!! ATGGGTTTATTTTCAAAAGA+TGG - Chr2:82534411-82534430 MsG0280011334.01.T01:intron 25.0%
!!! ATTTTTTGCCAACAATTTTC+AGG - Chr2:82533073-82533092 MsG0280011334.01.T01:intron 25.0%
!!! TAGATTAGGGGATTTAATTT+TGG - Chr2:82533226-82533245 MsG0280011334.01.T01:intron 25.0%
!!! TCTTTAGCTTTTGCTTTTTT+GGG + Chr2:82534068-82534087 None:intergenic 25.0%
!!! TTTTTTGCCAACAATTTTCA+GGG - Chr2:82533074-82533093 MsG0280011334.01.T01:intron 25.0%
ATTAAGTTTCAAGATATGGG+TGG - Chr2:82534376-82534395 MsG0280011334.01.T01:intron 30.0%
ATTTGTTCTTCTTGATGCTT+GGG - Chr2:82534199-82534218 MsG0280011334.01.T01:intron 30.0%
GAATATGAAGAATTCCTCAA+AGG + Chr2:82533431-82533450 None:intergenic 30.0%
GGTTTCAAAAGTTGAAAGAA+CGG - Chr2:82534297-82534316 MsG0280011334.01.T01:intron 30.0%
GTTTCAAAAGTTGAAAGAAC+GGG - Chr2:82534298-82534317 MsG0280011334.01.T01:intron 30.0%
TGAATGAAGATGAATTAGAG+TGG - Chr2:82534040-82534059 MsG0280011334.01.T01:intron 30.0%
TGTAAATCATGCAAATGAGA+TGG - Chr2:82534522-82534541 MsG0280011334.01.T01:intron 30.0%
TGTGAATTGAATTGGAGAAT+GGG - Chr2:82533195-82533214 MsG0280011334.01.T01:intron 30.0%
TTAGGAATTAGGGATTGAAT+TGG - Chr2:82533258-82533277 MsG0280011334.01.T01:intron 30.0%
TTGGTTATCCTAACAATCAA+GGG - Chr2:82533387-82533406 MsG0280011334.01.T01:intron 30.0%
TTGTGAATTGAATTGGAGAA+TGG - Chr2:82533194-82533213 MsG0280011334.01.T01:intron 30.0%
! AGGGATTGAATTGGTAATTT+AGG - Chr2:82533267-82533286 MsG0280011334.01.T01:intron 30.0%
! GGGATTGAATTGGTAATTTA+GGG - Chr2:82533268-82533287 MsG0280011334.01.T01:intron 30.0%
! GGTGTACTCTAACATTTTTA+GGG + Chr2:82532836-82532855 None:intergenic 30.0%
! TATTTTTCACCCTTCATTGA+TGG - Chr2:82533150-82533169 MsG0280011334.01.T01:intron 30.0%
! TTAATAATTCCCCCTTTTGT+TGG - Chr2:82531960-82531979 MsG0280011334.01.T01:CDS 30.0%
!! AATGGGGTTTTATCTAGATT+AGG - Chr2:82533212-82533231 MsG0280011334.01.T01:intron 30.0%
!! ATGGGGTTTTATCTAGATTA+GGG - Chr2:82533213-82533232 MsG0280011334.01.T01:intron 30.0%
!! TACTCTAACATTTTTAGGGA+AGG + Chr2:82532832-82532851 None:intergenic 30.0%
!!! ACGCAATTTTGATTTGAAAG+GGG + Chr2:82532966-82532985 None:intergenic 30.0%
!!! CTCTTTAGCTTTTGCTTTTT+TGG + Chr2:82534069-82534088 None:intergenic 30.0%
AACCATATTCCTTGCTTTGT+CGG + Chr2:82533727-82533746 None:intergenic 35.0%
AACTTATGAATTTGCAGCTC+GGG - Chr2:82534098-82534117 MsG0280011334.01.T01:intron 35.0%
AATCCCTAATTCCTAAAGTG+TGG + Chr2:82533254-82533273 None:intergenic 35.0%
AGCAAGAAACAACATTTCCT+AGG - Chr2:82532182-82532201 MsG0280011334.01.T01:intron 35.0%
ATCGACATGATCATAATCTC+GGG + Chr2:82533476-82533495 None:intergenic 35.0%
ATGATGAAGATCAGTTAGGA+GGG - Chr2:82533494-82533513 MsG0280011334.01.T01:intron 35.0%
ATGCAAATTCACAGTTGGTT+TGG + Chr2:82531849-82531868 None:intergenic 35.0%
CAACTTATGAATTTGCAGCT+CGG - Chr2:82534097-82534116 MsG0280011334.01.T01:intron 35.0%
CATCGACATGATCATAATCT+CGG + Chr2:82533477-82533496 None:intergenic 35.0%
CATTTGTTCTTCTTGATGCT+TGG - Chr2:82534198-82534217 MsG0280011334.01.T01:intron 35.0%
CGATGATAATATTCTTACGG+AGG + Chr2:82532382-82532401 None:intergenic 35.0%
CTTAAGTTTCAGTATTCGCA+TGG + Chr2:82532007-82532026 None:intergenic 35.0%
GAATGAAGGTAACAATGATG+AGG - Chr2:82533793-82533812 MsG0280011334.01.T01:intron 35.0%
GACGACAAGTAATGAAAAGA+TGG - Chr2:82531886-82531905 MsG0280011334.01.T01:CDS 35.0%
GATAATATTCTTACGGAGGT+CGG + Chr2:82532378-82532397 None:intergenic 35.0%
GCAAGTTGCAATTGTTGAAA+TGG - Chr2:82533312-82533331 MsG0280011334.01.T01:intron 35.0%
GCATGATTTACATAAACTCC+AGG + Chr2:82534514-82534533 None:intergenic 35.0%
GCGAATACTGAAACTTAAGA+GGG - Chr2:82532008-82532027 MsG0280011334.01.T01:CDS 35.0%
GTGAATTGAATTGGAGAATG+GGG - Chr2:82533196-82533215 MsG0280011334.01.T01:intron 35.0%
GTTGGTTATCCTAACAATCA+AGG - Chr2:82533386-82533405 MsG0280011334.01.T01:intron 35.0%
GTTTAGCTGTTTGTTTGACT+TGG + Chr2:82532294-82532313 None:intergenic 35.0%
TAACAATGTGCCTATAATGG+AGG + Chr2:82532483-82532502 None:intergenic 35.0%
TATCCTAACAATCAAGGGTA+TGG - Chr2:82533392-82533411 MsG0280011334.01.T01:intron 35.0%
TCCTCCTGAAAATACAGAAT+CGG - Chr2:82534560-82534579 MsG0280011334.01.T01:CDS 35.0%
TGCGAATACTGAAACTTAAG+AGG - Chr2:82532007-82532026 MsG0280011334.01.T01:CDS 35.0%
TTAGGATAACCAACACCATA+TGG + Chr2:82533380-82533399 None:intergenic 35.0%
TTCATTACTTGTCGTCACTT+AGG + Chr2:82531882-82531901 None:intergenic 35.0%
TTGTTACCTTCATTCCCAAA+TGG + Chr2:82533788-82533807 None:intergenic 35.0%
TTTGGATGCAAATTCACAGT+TGG + Chr2:82531854-82531873 None:intergenic 35.0%
TTTGTTCTTCTTGATGCTTG+GGG - Chr2:82534200-82534219 MsG0280011334.01.T01:intron 35.0%
! AACAATGTGCCTATAATGGA+GGG + Chr2:82532482-82532501 None:intergenic 35.0%
! ACGTGATAATGACAATAAGC+AGG - Chr2:82534002-82534021 MsG0280011334.01.T01:intron 35.0%
! ATGATGTTGTTGATGAAGAC+CGG - Chr2:82533551-82533570 MsG0280011334.01.T01:intron 35.0%
! ATTGCTGACTGAAAAACCTT+TGG - Chr2:82532100-82532119 MsG0280011334.01.T01:CDS 35.0%
! GAGAAGAATGTTGTTTGTGT+GGG + Chr2:82532219-82532238 None:intergenic 35.0%
! GGGTGTACTCTAACATTTTT+AGG + Chr2:82532837-82532856 None:intergenic 35.0%
! GTTATCTGAAACATTCTGTG+AGG - Chr2:82533744-82533763 MsG0280011334.01.T01:intron 35.0%
! TTTAGGATTCCCTTACTGAA+TGG - Chr2:82534162-82534181 MsG0280011334.01.T01:intron 35.0%
!! CATAACATTGTTTTGCAGGA+TGG + Chr2:82532161-82532180 None:intergenic 35.0%
!! CTAACATTTTTAGGGAAGGT+GGG + Chr2:82532828-82532847 None:intergenic 35.0%
!! GCTTCATAACATTGTTTTGC+AGG + Chr2:82532165-82532184 None:intergenic 35.0%
!! TAACATTTTTAGGGAAGGTG+GGG + Chr2:82532827-82532846 None:intergenic 35.0%
!! TCTAACATTTTTAGGGAAGG+TGG + Chr2:82532829-82532848 None:intergenic 35.0%
!! TGGGGTTTTATCTAGATTAG+GGG - Chr2:82533214-82533233 MsG0280011334.01.T01:intron 35.0%
!! TTGATGATGATGCAATTGCA+AGG - Chr2:82533341-82533360 MsG0280011334.01.T01:intron 35.0%
!!! CTAAACGATCTTTTGGGTTT+AGG - Chr2:82534145-82534164 MsG0280011334.01.T01:intron 35.0%
!!! TAATTTTGGAGCCACACTTT+AGG - Chr2:82533240-82533259 MsG0280011334.01.T01:intron 35.0%
AAAATGTTGACGACGAGGAT+GGG - Chr2:82533950-82533969 MsG0280011334.01.T01:intron 40.0%
AAGATAGCAATGACGAGGAT+GGG - Chr2:82533917-82533936 MsG0280011334.01.T01:intron 40.0%
AAGTTTCAAGATATGGGTGG+TGG - Chr2:82534379-82534398 MsG0280011334.01.T01:intron 40.0%
AATCGTCTTCCAACAAAAGG+GGG + Chr2:82531972-82531991 None:intergenic 40.0%
AATGACGATGAAGATCGGTT+AGG - Chr2:82533517-82533536 MsG0280011334.01.T01:intron 40.0%
ACATCATTACTAACGTGAGC+CGG + Chr2:82532872-82532891 None:intergenic 40.0%
AGAATGTTGAAACGTGGAAG+TGG + Chr2:82532241-82532260 None:intergenic 40.0%
AGGTAACAATGATGAGGATG+AGG - Chr2:82533799-82533818 MsG0280011334.01.T01:intron 40.0%
ATGAGGATGAAGATGAAGAG+CGG - Chr2:82533816-82533835 MsG0280011334.01.T01:intron 40.0%
ATGGCAACAAGTTGCAGAAA+AGG - Chr2:82534267-82534286 MsG0280011334.01.T01:intron 40.0%
CAATCGTCTTCCAACAAAAG+GGG + Chr2:82531973-82531992 None:intergenic 40.0%
CTTCAGATCAGAATAACGAG+CGG + Chr2:82532066-82532085 None:intergenic 40.0%
CTTCTCAGTCCATTCAGTAA+GGG + Chr2:82534174-82534193 None:intergenic 40.0%
CTTCTTCATCAGCATGCTTT+AGG + Chr2:82533900-82533919 None:intergenic 40.0%
GAGATAGGCTAAGTTTAGCT+TGG + Chr2:82532460-82532479 None:intergenic 40.0%
GATGATGAAGATCAGTTAGG+AGG - Chr2:82533493-82533512 MsG0280011334.01.T01:intron 40.0%
GATGGTATAGACATGAGTGT+GGG + Chr2:82532413-82532432 None:intergenic 40.0%
GCAAGAACCCTGAAAATTGT+TGG + Chr2:82533084-82533103 None:intergenic 40.0%
GCAATCGTCTTCCAACAAAA+GGG + Chr2:82531974-82531993 None:intergenic 40.0%
GTCGATGATGAAGATCAGTT+AGG - Chr2:82533490-82533509 MsG0280011334.01.T01:intron 40.0%
TAGATTCATTTGCAGCTGGA+TGG + Chr2:82533453-82533472 None:intergenic 40.0%
TCGAGAAGAATGTTGAAACG+TGG + Chr2:82532247-82532266 None:intergenic 40.0%
TGAAGAAGATAGCAATGACG+AGG - Chr2:82533912-82533931 MsG0280011334.01.T01:intron 40.0%
TGATCATCATTCCCTAAAGC+AGG - Chr2:82533658-82533677 MsG0280011334.01.T01:intron 40.0%
TGATGGCAAGAAGCCAAAAA+TGG - Chr2:82533167-82533186 MsG0280011334.01.T01:intron 40.0%
TGATGGTATAGACATGAGTG+TGG + Chr2:82532414-82532433 None:intergenic 40.0%
TGCAATCGTCTTCCAACAAA+AGG + Chr2:82531975-82531994 None:intergenic 40.0%
TGGTTACTTGAGTCAACCAA+AGG + Chr2:82532119-82532138 None:intergenic 40.0%
TTCAGATCAGAATAACGAGC+GGG + Chr2:82532065-82532084 None:intergenic 40.0%
TTGCCATACCCTTGATTGTT+AGG + Chr2:82533398-82533417 None:intergenic 40.0%
TTGGAAGACGATTGCAGAAA+AGG - Chr2:82531979-82531998 MsG0280011334.01.T01:CDS 40.0%
TTGTGAGGTTCAGGAATTAG+CGG + Chr2:82531913-82531932 None:intergenic 40.0%
! AAGAATGTTGTTTGTGTGGG+AGG + Chr2:82532216-82532235 None:intergenic 40.0%
! CAACACCATATGGTGTTAGA+GGG + Chr2:82533370-82533389 None:intergenic 40.0%
! CAGCTGCTAAACGATCTTTT+GGG - Chr2:82534139-82534158 MsG0280011334.01.T01:intron 40.0%
! GAGCCACACTTTAGGAATTA+GGG - Chr2:82533248-82533267 MsG0280011334.01.T01:intron 40.0%
! GGAGAAGAATGTTGTTTGTG+TGG + Chr2:82532220-82532239 None:intergenic 40.0%
! TGTTGTTGATGAAGACCGTT+AGG - Chr2:82533555-82533574 MsG0280011334.01.T01:intron 40.0%
!! AACATTTTTAGGGAAGGTGG+GGG + Chr2:82532826-82532845 None:intergenic 40.0%
!! ACCGATTCTGTATTTTCAGG+AGG + Chr2:82534564-82534583 None:intergenic 40.0%
!! ACTTTTTCTGGACGGACAAA+TGG + Chr2:82532342-82532361 None:intergenic 40.0%
!! AGTTGCAGAAAAGGTATCAG+TGG - Chr2:82534276-82534295 MsG0280011334.01.T01:intron 40.0%
!! ATAGGCTAAGTTTAGCTTGG+TGG + Chr2:82532457-82532476 None:intergenic 40.0%
!! CGAACCGATTCTGTATTTTC+AGG + Chr2:82534567-82534586 None:intergenic 40.0%
!! GAGCGTATTTTTATGAAGCC+TGG - Chr2:82534493-82534512 MsG0280011334.01.T01:intron 40.0%
!! TTTTAGAGGATATGTCTCGC+TGG - Chr2:82532563-82532582 MsG0280011334.01.T01:CDS 40.0%
!!! GTAGTAGCACTTTTTCTGGA+CGG + Chr2:82532350-82532369 None:intergenic 40.0%
AAATGTTGACGACGAGGATG+GGG - Chr2:82533951-82533970 MsG0280011334.01.T01:intron 45.0%
ACAGCTAAACCAAACGCACA+AGG - Chr2:82532304-82532323 MsG0280011334.01.T01:CDS 45.0%
ACCTTCATTCCCAAATGGCT+GGG + Chr2:82533783-82533802 None:intergenic 45.0%
ACGATGAAGATCGGTTAGGA+GGG - Chr2:82533521-82533540 MsG0280011334.01.T01:intron 45.0%
AGAGTCTTCGATCTGAGGAA+TGG - Chr2:82534248-82534267 MsG0280011334.01.T01:intron 45.0%
AGATAGCAATGACGAGGATG+GGG - Chr2:82533918-82533937 MsG0280011334.01.T01:intron 45.0%
AGCCTATCTCCCTCCATTAT+AGG - Chr2:82532470-82532489 MsG0280011334.01.T01:intron 45.0%
ATCATTACTAACGTGAGCCG+GGG + Chr2:82532870-82532889 None:intergenic 45.0%
ATGAAGACGATGACACCGAT+GGG - Chr2:82533684-82533703 MsG0280011334.01.T01:intron 45.0%
CAACATCATCTCCTCCTATC+CGG + Chr2:82533611-82533630 None:intergenic 45.0%
CAGCTAAACCAAACGCACAA+GGG - Chr2:82532305-82532324 MsG0280011334.01.T01:CDS 45.0%
CATCATTACTAACGTGAGCC+GGG + Chr2:82532871-82532890 None:intergenic 45.0%
CCTCTAACACCATATGGTGT+TGG - Chr2:82533368-82533387 MsG0280011334.01.T01:intron 45.0%
CCTTCTCAGTCCATTCAGTA+AGG + Chr2:82534175-82534194 None:intergenic 45.0%
CGAAAACCCTTTATGCTCAG+TGG + Chr2:82532270-82532289 None:intergenic 45.0%
CTCCATATTCCCAGCCATTT+GGG - Chr2:82533771-82533790 MsG0280011334.01.T01:intron 45.0%
CTCTTGAGTTCGAACGACAA+GGG + Chr2:82534474-82534493 None:intergenic 45.0%
GAAAATGTTGACGACGAGGA+TGG - Chr2:82533949-82533968 MsG0280011334.01.T01:intron 45.0%
GAAGAAGAGTCTTCGATCTG+AGG - Chr2:82534243-82534262 MsG0280011334.01.T01:intron 45.0%
GAAGATAGCAATGACGAGGA+TGG - Chr2:82533916-82533935 MsG0280011334.01.T01:intron 45.0%
GACCGACAAAGCAAGGAATA+TGG - Chr2:82533722-82533741 MsG0280011334.01.T01:intron 45.0%
GAGGGAATGACGATGAAGAT+CGG - Chr2:82533512-82533531 MsG0280011334.01.T01:intron 45.0%
GCAATCTCAAACACCCTTTG+AGG - Chr2:82533414-82533433 MsG0280011334.01.T01:intron 45.0%
GGATGAAAATGTTGACGACG+AGG - Chr2:82533945-82533964 MsG0280011334.01.T01:intron 45.0%
GGCTTCTTGCCATCAATGAA+GGG + Chr2:82533162-82533181 None:intergenic 45.0%
GGGTCAACATGGTTAGTGTT+TGG + Chr2:82532045-82532064 None:intergenic 45.0%
GGTATCCCTCTAACACCATA+TGG - Chr2:82533362-82533381 MsG0280011334.01.T01:intron 45.0%
GTCTTCATCCACCTGCTTTA+GGG + Chr2:82533672-82533691 None:intergenic 45.0%
GTGTGCTTGATCGATGGAAA+TGG + Chr2:82532139-82532158 None:intergenic 45.0%
TACCTTCATTCCCAAATGGC+TGG + Chr2:82533784-82533803 None:intergenic 45.0%
TCATCATTCCCTAAAGCAGG+TGG - Chr2:82533661-82533680 MsG0280011334.01.T01:intron 45.0%
TCTCCATATTCCCAGCCATT+TGG - Chr2:82533770-82533789 MsG0280011334.01.T01:intron 45.0%
TCTCGACCACTGAGCATAAA+GGG - Chr2:82532261-82532280 MsG0280011334.01.T01:CDS 45.0%
TCTCTTGAGTTCGAACGACA+AGG + Chr2:82534475-82534494 None:intergenic 45.0%
TGAAGATGAAGAGCGGTTAG+TGG - Chr2:82533823-82533842 MsG0280011334.01.T01:intron 45.0%
TGACAATGACCGACAAAGCA+AGG - Chr2:82533715-82533734 MsG0280011334.01.T01:intron 45.0%
TGGCTTCTTGCCATCAATGA+AGG + Chr2:82533163-82533182 None:intergenic 45.0%
TTCCCAAATGGCTGGGAATA+TGG + Chr2:82533776-82533795 None:intergenic 45.0%
TTCTCGACCACTGAGCATAA+AGG - Chr2:82532260-82532279 MsG0280011334.01.T01:CDS 45.0%
TTCTGGACGGACAAATGGAT+AGG + Chr2:82532337-82532356 None:intergenic 45.0%
TTCTTGATGCTTGGGGTGAT+CGG - Chr2:82534207-82534226 MsG0280011334.01.T01:intron 45.0%
! AATGTTGTTTGTGTGGGAGG+AGG + Chr2:82532213-82532232 None:intergenic 45.0%
! CCAACACCATATGGTGTTAG+AGG + Chr2:82533371-82533390 None:intergenic 45.0%
! GCAGCTGCTAAACGATCTTT+TGG - Chr2:82534138-82534157 MsG0280011334.01.T01:intron 45.0%
! GGAGCCACACTTTAGGAATT+AGG - Chr2:82533247-82533266 MsG0280011334.01.T01:intron 45.0%
! GTTGATGAAGACCGTTAGGA+GGG - Chr2:82533559-82533578 MsG0280011334.01.T01:intron 45.0%
! GTTGTTGATGAAGACCGGAT+AGG - Chr2:82533594-82533613 MsG0280011334.01.T01:intron 45.0%
! TGCCTATAATGGAGGGAGAT+AGG + Chr2:82532475-82532494 None:intergenic 45.0%
! TGTTGATGAAGACCGTTAGG+AGG - Chr2:82533558-82533577 MsG0280011334.01.T01:intron 45.0%
!! CCTTACTGAATGGACTGAGA+AGG - Chr2:82534172-82534191 MsG0280011334.01.T01:intron 45.0%
!! GGGTGGTGGAGATAGAAAAT+GGG - Chr2:82534393-82534412 MsG0280011334.01.T01:intron 45.0%
!! TGGGTGGTGGAGATAGAAAA+TGG - Chr2:82534392-82534411 MsG0280011334.01.T01:intron 45.0%
!!! GAGGGTAGTAGCACTTTTTC+TGG + Chr2:82532354-82532373 None:intergenic 45.0%
!!! AAAAAAAAGATTTTAATTTT+TGG + Chr2:82533113-82533132 None:intergenic 5.0%
!!! AAAAAAAGATTTTAATTTTT+GGG + Chr2:82533112-82533131 None:intergenic 5.0%
AGATGAAGAGCGGTTAGTGG+AGG - Chr2:82533826-82533845 MsG0280011334.01.T01:intron 50.0%
AGGATGGTGTGCTTGATCGA+TGG + Chr2:82532145-82532164 None:intergenic 50.0%
AGTACGACGGGTATTCGTGA+TGG + Chr2:82532431-82532450 None:intergenic 50.0%
ATAGACATGAGTGTGGGAGC+TGG + Chr2:82532407-82532426 None:intergenic 50.0%
ATTCTTACGGAGGTCGGAGA+GGG + Chr2:82532372-82532391 None:intergenic 50.0%
ATTGTCATCACCACCCCCAT+CGG + Chr2:82533702-82533721 None:intergenic 50.0%
CAATGACGAGGATGGGGATA+GGG - Chr2:82533924-82533943 MsG0280011334.01.T01:intron 50.0%
CGGGTAGATTCATTTGCAGC+TGG + Chr2:82533457-82533476 None:intergenic 50.0%
CGTCTTCATCCACCTGCTTT+AGG + Chr2:82533673-82533692 None:intergenic 50.0%
GAATAACGAGCGGGTCAACA+TGG + Chr2:82532056-82532075 None:intergenic 50.0%
GACGATGAAGATCGGTTAGG+AGG - Chr2:82533520-82533539 MsG0280011334.01.T01:intron 50.0%
GATGAAGACGATGACACCGA+TGG - Chr2:82533683-82533702 MsG0280011334.01.T01:intron 50.0%
GTCGTCACTTAGGTCAGCTT+TGG + Chr2:82531872-82531891 None:intergenic 50.0%
TATTCTTACGGAGGTCGGAG+AGG + Chr2:82532373-82532392 None:intergenic 50.0%
TCATCACCGTTCCCTCCTAA+CGG + Chr2:82533573-82533592 None:intergenic 50.0%
TCATTACTAACGTGAGCCGG+GGG + Chr2:82532869-82532888 None:intergenic 50.0%
TCCCAGCCATTTGGGAATGA+AGG - Chr2:82533779-82533798 MsG0280011334.01.T01:intron 50.0%
TGAAGACCGTTAGGAGGGAA+CGG - Chr2:82533564-82533583 MsG0280011334.01.T01:intron 50.0%
TGAAGACGATGACACCGATG+GGG - Chr2:82533685-82533704 MsG0280011334.01.T01:intron 50.0%
! AGCTTGGTGGAAGAGTACGA+CGG + Chr2:82532444-82532463 None:intergenic 50.0%
! CAAGGGAGTCTTGCTTGTTG+TGG + Chr2:82534457-82534476 None:intergenic 50.0%
! GTTGATGAAGACCGGATAGG+AGG - Chr2:82533597-82533616 MsG0280011334.01.T01:intron 50.0%
CGTCAGTGGTTGTGAGGTTC+AGG + Chr2:82531922-82531941 None:intergenic 55.0%
CGTTTAGCAGCTGCAGCTGA+CGG + Chr2:82534132-82534151 None:intergenic 55.0%
GAAGACGATGACACCGATGG+GGG - Chr2:82533686-82533705 MsG0280011334.01.T01:intron 55.0%
GAAGCAAACGTCTGCGTCAG+TGG + Chr2:82531936-82531955 None:intergenic 55.0%
GCAATGACGAGGATGGGGAT+AGG - Chr2:82533923-82533942 MsG0280011334.01.T01:intron 55.0%
GGCAATGTCCCTTGTGCGTT+TGG + Chr2:82532316-82532335 None:intergenic 55.0%
TGACGACGAGGATGGGGATA+GGG - Chr2:82533957-82533976 MsG0280011334.01.T01:intron 55.0%
TGTGGGAGGAGGATCTTCCT+AGG + Chr2:82532202-82532221 None:intergenic 55.0%
TTGACGACGAGGATGGGGAT+AGG - Chr2:82533956-82533975 MsG0280011334.01.T01:intron 55.0%
! GCTTGGTGGAAGAGTACGAC+GGG + Chr2:82532443-82532462 None:intergenic 55.0%
!! GGGAGTCTTGCTTGTTGTGG+TGG + Chr2:82534454-82534473 None:intergenic 55.0%
CGTCTGCGTCAGTGGTTGTG+AGG + Chr2:82531928-82531947 None:intergenic 60.0%
TACTAACGTGAGCCGGGGGT+GGG + Chr2:82532865-82532884 None:intergenic 60.0%
TTACTAACGTGAGCCGGGGG+TGG + Chr2:82532866-82532885 None:intergenic 60.0%
GACGATGACACCGATGGGGG+TGG - Chr2:82533689-82533708 MsG0280011334.01.T01:intron 65.0%
GCAGCTGCAGCTGACGGTGT+TGG + Chr2:82534126-82534145 None:intergenic 65.0%
AACGTGAGCCGGGGGTGGGT+GGG + Chr2:82532861-82532880 None:intergenic 70.0%
TAACGTGAGCCGGGGGTGGG+TGG + Chr2:82532862-82532881 None:intergenic 70.0%
TACACCCACCCACCCACCCC+CGG - Chr2:82532850-82532869 MsG0280011334.01.T01:intron 70.0%
TGAGCCGGGGGTGGGTGGGT+GGG + Chr2:82532857-82532876 None:intergenic 75.0%
! GTGAGCCGGGGGTGGGTGGG+TGG + Chr2:82532858-82532877 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 82531826 82534591 82531826 ID=MsG0280011334.01;Name=MsG0280011334.01
Chr2 mRNA 82531826 82534591 82531826 ID=MsG0280011334.01.T01;Parent=MsG0280011334.01;Name=MsG0280011334.01.T01;_AED=0.32;_eAED=0.33;_QI=0|0|0|0.8|1|1|5|0|311
Chr2 exon 82534524 82534591 82534524 ID=MsG0280011334.01.T01:exon:2969;Parent=MsG0280011334.01.T01
Chr2 exon 82532862 82533009 82532862 ID=MsG0280011334.01.T01:exon:2968;Parent=MsG0280011334.01.T01
Chr2 exon 82532531 82532737 82532531 ID=MsG0280011334.01.T01:exon:2967;Parent=MsG0280011334.01.T01
Chr2 exon 82532189 82532393 82532189 ID=MsG0280011334.01.T01:exon:2966;Parent=MsG0280011334.01.T01
Chr2 exon 82531826 82532133 82531826 ID=MsG0280011334.01.T01:exon:2965;Parent=MsG0280011334.01.T01
Chr2 CDS 82534524 82534591 82534524 ID=MsG0280011334.01.T01:cds;Parent=MsG0280011334.01.T01
Chr2 CDS 82532862 82533009 82532862 ID=MsG0280011334.01.T01:cds;Parent=MsG0280011334.01.T01
Chr2 CDS 82532531 82532737 82532531 ID=MsG0280011334.01.T01:cds;Parent=MsG0280011334.01.T01
Chr2 CDS 82532189 82532393 82532189 ID=MsG0280011334.01.T01:cds;Parent=MsG0280011334.01.T01
Chr2 CDS 82531826 82532133 82531826 ID=MsG0280011334.01.T01:cds;Parent=MsG0280011334.01.T01
Gene Sequence

>MsG0280011334.01.T01

ATGTATCGACAGAAGAGATACCAAACCAACTGTGAATTTGCATCCAAAGCTGACCTAAGTGACGACAAGGTATGGCAATCTCAAACACCCTTTGAGGAATTCTTCATATTCCATCCAGCTGCAAATGAATCTACCCGAGATTATGATCATGTCGATGATGAAGATCAGTTAGGAGGGAATGACGATGAAGATCGGTTAGGAGGGAATGATGATGATGTGGATGAAGACGATGACACCGATGGGGGTGGTGATGACAATGACCGACAAAGCAAGGAATATGGTTATCTGAAACATTCTGTGAGGAATTCTCCATATTCCCAGCCATTTGGGAATGAAGGTAACAATGATGAGGATGAGGATGAAGATGAAGAGCGGTTAGTGGAGGAAGATGATGATGATGTTGATATTGATCAAAATAACAATGAAAGTTATGCCATGATGAATGAAGATGAATTAGAGTGGCACCCAAAAAAGCAAAAGCTAAAGAGTTTGATGTCAACTTATGAATTTGCAGCTCGGGTGCCAACACCGTCAGCTGCAGCTGCTAAACGATCTTTTGGGTTTAGGATTCCCTTACTGAATGGACTGAGAAGGAGACATTTGTTCTTCTTGATGCTTGGGGTGATCGAAAAGGTATCAGTGGTTTCAAAAGTTGAAAGAACGGGTACTCAGTGTAGAAATCGTTTAGATACATTGAAGAAAAAATACAAAAAGGACAAGATTAAGTTTCAAGATATGGGTGGTGGAGATAGAAAATGGGTTTATTTTCAAAAGATGGATAAACTAATGTCTTCTCCACCACAACAAGCAAGACTCCCTTGTCGTTCGAACTCAAGAGAGCGTATTTTTATGAAGCCTGGAGTTTATGTAAATCATGCAAATGAGATGGATGACATGAAGATAGTCCTCCTGAAAATACAGAATCGGTTCGTGTAG

Protein sequence

>MsG0280011334.01.T01

MYRQKRYQTNCEFASKADLSDDKVWQSQTPFEEFFIFHPAANESTRDYDHVDDEDQLGGNDDEDRLGGNDDDVDEDDDTDGGGDDNDRQSKEYGYLKHSVRNSPYSQPFGNEGNNDEDEDEDEERLVEEDDDDVDIDQNNNESYAMMNEDELEWHPKKQKLKSLMSTYEFAARVPTPSAAAAKRSFGFRIPLLNGLRRRHLFFLMLGVIEKVSVVSKVERTGTQCRNRLDTLKKKYKKDKIKFQDMGGGDRKWVYFQKMDKLMSSPPQQARLPCRSNSRERIFMKPGVYVNHANEMDDMKIVLLKIQNRFV*