AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025206.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025206.01.T01 MTR_5g024240 96.056 710 27 1 1 710 1 709 0.0 1407
MsG0580025206.01.T01 MTR_5g025350 70.849 271 47 3 453 717 12 256 4.34e-120 360
MsG0580025206.01.T01 MTR_5g025380 67.708 96 16 1 615 710 5 85 3.31e-33 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025206.01.T01 AT2G17550 41.328 738 307 28 1 712 1 638 5.60e-132 409
MsG0580025206.01.T01 AT2G17550 41.717 664 262 27 74 712 1 564 3.59e-116 365

Find 159 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGACTCAGACGGTTTC+TGG 0.172392 5:-15306974 None:intergenic
CTGGTTTATACTTTGGTTCT+TGG 0.181940 5:+15307051 MsG0580025206.01.T01:CDS
GATGGATGGAGCCGGAATTT+TGG 0.214979 5:+15304927 MsG0580025206.01.T01:CDS
TACATGATCATTACACAAAT+TGG 0.220293 5:+15307612 MsG0580025206.01.T01:three_prime_UTR
TAAAAGAATAAGTGAAAATA+TGG 0.225343 5:+15304779 MsG0580025206.01.T01:CDS
CTTGTGAGCATGGACTTTCT+TGG 0.235543 5:-15302748 None:intergenic
GAATCACTTTCAGTTGTTCT+TGG 0.245622 5:+15307238 MsG0580025206.01.T01:three_prime_UTR
GTTATAAGATTTGATCATTA+AGG 0.248170 5:-15305195 None:intergenic
CTTACCGGTAATTCTCCTTC+TGG 0.270394 5:-15303079 None:intergenic
AGGAACTGTTGAAGTTAGTA+TGG 0.285855 5:+15307332 MsG0580025206.01.T01:three_prime_UTR
AGAGATTTACTTGTTGCTTC+TGG 0.294038 5:+15307032 MsG0580025206.01.T01:CDS
GCTAGAAACACTTCCGATTT+CGG 0.300734 5:-15305054 None:intergenic
TGGAATAAGTCTTTGTTAAG+AGG 0.301570 5:+15307071 MsG0580025206.01.T01:CDS
TGAATCTCTACTGATAAATT+CGG 0.305013 5:-15305594 None:intergenic
AAATACAAACAGGATCTTTC+AGG 0.313229 5:+15305759 MsG0580025206.01.T01:CDS
AGCAAAACTGTATCTCAAAT+TGG 0.317168 5:-15306020 None:intergenic
GCAGTGTTCATGAAGACTTT+TGG 0.334930 5:+15306598 MsG0580025206.01.T01:CDS
ATTTGACGAGCAATAAGTTT+AGG 0.338979 5:-15305461 None:intergenic
CAATGAAGAGATCAATATAT+TGG 0.342843 5:+15307459 MsG0580025206.01.T01:three_prime_UTR
ACATCAAGCAGCAAGGTTTC+AGG 0.350521 5:+15305016 MsG0580025206.01.T01:CDS
TGTGTGAGTGTGTGTGATGT+AGG 0.353846 5:+15307707 MsG0580025206.01.T01:three_prime_UTR
CATGAGTGAAGTGAATAATT+AGG 0.357648 5:+15307760 MsG0580025206.01.T01:three_prime_UTR
GACATCAGCTCTGGTTTAAC+TGG 0.360505 5:+15306702 MsG0580025206.01.T01:CDS
GCTACAAAACTATATCAATT+AGG 0.361532 5:-15307645 None:intergenic
TTGAGGACATGAGAGTCTTT+TGG 0.374336 5:+15302671 MsG0580025206.01.T01:five_prime_UTR
CTTAGAGTTCTGCTCTTTGA+AGG 0.378221 5:-15305155 None:intergenic
TCAAGATCAGGAACATCATT+TGG 0.380795 5:+15305863 MsG0580025206.01.T01:CDS
ATGGAAGGAGTTCAGTTAGT+TGG 0.381437 5:+15304829 MsG0580025206.01.T01:CDS
TGTTCAAAGTTTGCCGAAAT+CGG 0.382797 5:+15305041 MsG0580025206.01.T01:CDS
GTTGCTTCTGGTTTATACTT+TGG 0.384654 5:+15307044 MsG0580025206.01.T01:CDS
TATTCAATCATGAAGAGAAT+TGG 0.394633 5:+15305276 MsG0580025206.01.T01:CDS
GATACATATGCAAAGCCTAT+TGG 0.399418 5:+15307095 MsG0580025206.01.T01:CDS
GAATCTCTACTGATAAATTC+GGG 0.401716 5:-15305593 None:intergenic
ATCAGCCTTGCCACAAGGCT+TGG 0.403724 5:-15304708 None:intergenic
GAGAATTGGACTAGTTCAAC+AGG 0.404604 5:+15305290 MsG0580025206.01.T01:CDS
GAAATGAATCGAATTCAATA+TGG 0.405359 5:-15304878 None:intergenic
TTGAGTTCAATCCCTTGGTC+TGG 0.405396 5:+15307430 MsG0580025206.01.T01:three_prime_UTR
TCTTTATTCACTTGATACTT+TGG 0.416705 5:+15307396 MsG0580025206.01.T01:three_prime_UTR
AACATTTGAGTTCAATCCCT+TGG 0.418429 5:+15307425 MsG0580025206.01.T01:three_prime_UTR
TTCAAAACAGAATTTCCAAT+AGG 0.421619 5:-15307110 None:intergenic
TGGAAGGAGTTCAGTTAGTT+GGG 0.424198 5:+15304830 MsG0580025206.01.T01:CDS
AGCCTTGTGGCAAGGCTGAT+GGG 0.435226 5:+15304711 MsG0580025206.01.T01:CDS
TCGTCTCTTGAGGACAAATC+AGG 0.438083 5:-15306654 None:intergenic
ACCCTTGCTCCACCAATGTA+TGG 0.439738 5:-15307587 None:intergenic
CGGCCCAGAAGGAGAATTAC+CGG 0.440212 5:+15303075 MsG0580025206.01.T01:CDS
GACAAATCAGGAGTTGATAC+TGG 0.442829 5:-15306642 None:intergenic
GTGTGAGTGTGTGTGATGTA+GGG 0.445746 5:+15307708 MsG0580025206.01.T01:three_prime_UTR
GATGTTCCTGATCTTGATAC+AGG 0.455850 5:-15305857 None:intergenic
TTACCGGTAATTCTCCTTCT+GGG 0.456724 5:-15303078 None:intergenic
AAGCCTTGTGGCAAGGCTGA+TGG 0.457004 5:+15304710 MsG0580025206.01.T01:CDS
CAACCGCTTCAAGCTTCCTC+CGG 0.459478 5:-15305931 None:intergenic
AAGGATCTTACAAGGTTCCT+TGG 0.460932 5:-15305827 None:intergenic
GATCAATATATTGGAAAGAG+AGG 0.461233 5:+15307468 MsG0580025206.01.T01:three_prime_UTR
AAAAGAATAAGTGAAAATAT+GGG 0.462177 5:+15304780 MsG0580025206.01.T01:CDS
TCATGATTGAATATGCAATC+AGG 0.468328 5:-15305266 None:intergenic
CTGATAAATTCGGGGACACT+TGG 0.469625 5:-15305584 None:intergenic
TCGGGAACATCCACAGGAAA+AGG 0.478838 5:+15304962 MsG0580025206.01.T01:CDS
TTTGAAATGTGCAGATGAAT+GGG 0.480380 5:+15305715 MsG0580025206.01.T01:CDS
TTGCCGTGTGCTTGATCGAT+TGG 0.481420 5:-15304679 None:intergenic
GAAGAAACAGAAATACAAAC+AGG 0.481676 5:+15305749 MsG0580025206.01.T01:CDS
TCTGCTCCTGTATCAAGATC+AGG 0.482542 5:+15305851 MsG0580025206.01.T01:CDS
GGAATAAGTCTTTGTTAAGA+GGG 0.490427 5:+15307072 MsG0580025206.01.T01:CDS
AATTTATCAGTAGAGATTCA+AGG 0.492213 5:+15305597 MsG0580025206.01.T01:CDS
AGTTCAACAGGGACTTTACC+AGG 0.494157 5:+15305302 MsG0580025206.01.T01:CDS
GAAACCGTCTGAGTCTGAAT+TGG 0.496615 5:+15306977 MsG0580025206.01.T01:CDS
TCTCTTATGTAAGATTCTGC+TGG 0.500088 5:-15307014 None:intergenic
TTCCATACATTGGTGGAGCA+AGG 0.501510 5:+15307585 MsG0580025206.01.T01:three_prime_UTR
CTTCCTCCGGATATGAGCCC+CGG 0.510820 5:-15305918 None:intergenic
GCAACAGGTTTAGTGTCTAC+AGG 0.513735 5:-15304747 None:intergenic
TCCATGTTGTCGCCGCCTCA+AGG 0.519717 5:+15307307 MsG0580025206.01.T01:three_prime_UTR
AACAGTTCCTTTCCTTGAGG+CGG 0.522924 5:-15307319 None:intergenic
GCAATAAGTTTAGGATCAGA+TGG 0.523659 5:-15305452 None:intergenic
GAATGATGAAAATTCTATGA+AGG 0.523675 5:+15307165 MsG0580025206.01.T01:three_prime_UTR
TTTCACAAAGTTAAAGATGA+CGG 0.527796 5:+15304897 MsG0580025206.01.T01:CDS
TGGTAAGAGAAATCAATCAA+TGG 0.527992 5:+15306060 MsG0580025206.01.T01:CDS
ACACTGCTGCACACAGATGC+AGG 0.529299 5:-15306582 None:intergenic
TGAATTCAATCAAGGGAGGA+TGG 0.531417 5:+15302725 MsG0580025206.01.T01:CDS
AATAATCGTTATTCAAACGC+TGG 0.532520 5:+15304624 MsG0580025206.01.T01:CDS
TTGAATATGCAATCAGGACC+AGG 0.536062 5:-15305260 None:intergenic
AGAGAATCTGAACAGCGAAA+AGG 0.539618 5:+15305091 MsG0580025206.01.T01:CDS
CTTGTGATATCTCTCATTGT+CGG 0.539942 5:-15306109 None:intergenic
AGGTTTCAAGATAACGATCC+TGG 0.540036 5:-15305240 None:intergenic
TTGTTGATTTGGCAGAGCTA+AGG 0.541285 5:+15306901 MsG0580025206.01.T01:intron
CACAGCAGTCTCGTCTCTTG+AGG 0.541373 5:-15306664 None:intergenic
GAAAGCTTCTACTAGAGGAC+CGG 0.541402 5:+15305885 MsG0580025206.01.T01:CDS
ATTATCAAGTAGAAGAAGAC+TGG 0.542682 5:+15304595 MsG0580025206.01.T01:CDS
TTCAAGATAACGATCCTGGT+TGG 0.547288 5:-15305236 None:intergenic
CTGCACACAGATGCAGGACT+CGG 0.548951 5:-15306576 None:intergenic
TGTTTCGTTGTATCCTTCAC+CGG 0.549580 5:+15307366 MsG0580025206.01.T01:three_prime_UTR
CTGAATCTAGACAGTGTCAA+AGG 0.551664 5:-15307265 None:intergenic
TATGATGTCTCTTGTGAGCA+TGG 0.552181 5:-15302758 None:intergenic
GCCTTGTGGCAAGGCTGATG+GGG 0.554480 5:+15304712 MsG0580025206.01.T01:CDS
AGTGAATAAAGAGACATATC+CGG 0.556492 5:-15307385 None:intergenic
AAGGCGTCGGGAACATCCAC+AGG 0.557978 5:+15304956 MsG0580025206.01.T01:CDS
AAAGATGACGGCGATGATGA+TGG 0.560500 5:+15304909 MsG0580025206.01.T01:CDS
TCCATACATTGGTGGAGCAA+GGG 0.560515 5:+15307586 MsG0580025206.01.T01:three_prime_UTR
GTGTCTCAATATCACTTCCT+CGG 0.563040 5:-15305415 None:intergenic
CATTGATTATTCCAGACCAA+GGG 0.564059 5:-15307441 None:intergenic
TGTGAGTGTGTGTGATGTAG+GGG 0.567641 5:+15307709 MsG0580025206.01.T01:three_prime_UTR
ACAAATCAAGCAAAATCTTG+TGG 0.568803 5:-15307210 None:intergenic
GTTGTCGCCGCCTCAAGGAA+AGG 0.569359 5:+15307312 MsG0580025206.01.T01:three_prime_UTR
ACAGAGAGTTGTTGTCTCCA+AGG 0.575318 5:+15305810 MsG0580025206.01.T01:CDS
AACTGTCGGAAAAGGTTATG+TGG 0.576766 5:+15305391 MsG0580025206.01.T01:CDS
CCGTCGTTCATAAGAACTGT+TGG 0.578230 5:-15306136 None:intergenic
GGAACTGTTGAAGTTAGTAT+GGG 0.578282 5:+15307333 MsG0580025206.01.T01:three_prime_UTR
TCTCAGAAGTACGGCCCAGA+AGG 0.579017 5:+15303064 MsG0580025206.01.T01:CDS
GAGCCCCGGTTAAAATGTGC+CGG 0.579772 5:-15305904 None:intergenic
GTTGAAACATCTCAGAAGTA+CGG 0.583724 5:+15303055 MsG0580025206.01.T01:CDS
ATGCACCAAGCCTTGTGGCA+AGG 0.586089 5:+15304703 MsG0580025206.01.T01:CDS
TCATTGATTATTCCAGACCA+AGG 0.588363 5:-15307442 None:intergenic
TCCTTGAGGCGGCGACAACA+TGG 0.589447 5:-15307308 None:intergenic
TCTTCTATACTATGTCTACC+TGG 0.595004 5:-15305320 None:intergenic
TGATATCTCTCATTGTCGGA+CGG 0.595675 5:-15306105 None:intergenic
ACCCCATCAGCCTTGCCACA+AGG 0.595923 5:-15304713 None:intergenic
TAAAGAGTTCCATACATTGG+TGG 0.596732 5:+15307578 MsG0580025206.01.T01:three_prime_UTR
ATTTGGAAAGCTTCTACTAG+AGG 0.598028 5:+15305880 MsG0580025206.01.T01:CDS
TAAAGAGACATATCCGGTGA+AGG 0.598715 5:-15307379 None:intergenic
CAAACAAGGGAACAAATGGA+AGG 0.600461 5:+15304814 MsG0580025206.01.T01:CDS
CAATCAATGGTAGAATCACA+TGG 0.601271 5:+15306073 MsG0580025206.01.T01:CDS
ACACATGGAAGGTGAAATTG+AGG 0.602173 5:+15302654 MsG0580025206.01.T01:five_prime_UTR
AATTCTAATGGAGTGACACA+TGG 0.604821 5:+15302639 None:intergenic
TCTTGATACAGGAGCAGACA+AGG 0.604956 5:-15305846 None:intergenic
AGGATCGTTATCTTGAAACC+TGG 0.605461 5:+15305242 MsG0580025206.01.T01:CDS
AAAGAATAAGTGAAAATATG+GGG 0.610226 5:+15304781 MsG0580025206.01.T01:CDS
TTCAACAGTTCCTTTCCTTG+AGG 0.611963 5:-15307322 None:intergenic
TTGAAGCACATCAAGCAGCA+AGG 0.614010 5:+15305009 MsG0580025206.01.T01:CDS
GCGATGATGATGGATGGAGC+CGG 0.614284 5:+15304919 MsG0580025206.01.T01:CDS
TGAGCAGACTGAATTTGAGT+CGG 0.615214 5:-15305519 None:intergenic
TAGATGCATCTTCTCCAACC+AGG 0.617998 5:+15305222 MsG0580025206.01.T01:CDS
CACATAATACAAGTATGCAA+AGG 0.618748 5:+15305123 MsG0580025206.01.T01:CDS
ATGACGGCGATGATGATGGA+TGG 0.620775 5:+15304913 MsG0580025206.01.T01:CDS
CAATAAAGAGTTCCATACAT+TGG 0.622061 5:+15307575 MsG0580025206.01.T01:three_prime_UTR
CTGATGTCTCTGAAAACTTG+TGG 0.622401 5:-15306687 None:intergenic
TGCACCAATTCAGACTCAGA+CGG 0.623432 5:-15306981 None:intergenic
GAATAAGTCTTTGTTAAGAG+GGG 0.627428 5:+15307073 MsG0580025206.01.T01:CDS
GTGAGTGTGTGTGATGTAGG+GGG 0.628186 5:+15307710 MsG0580025206.01.T01:three_prime_UTR
ACAAGATCATACGAAGGTGA+AGG 0.634923 5:+15305548 MsG0580025206.01.T01:CDS
TATCCAATCGATCAAGCACA+CGG 0.640457 5:+15304676 MsG0580025206.01.T01:CDS
GAGCAGACAAGGATCTTACA+AGG 0.642350 5:-15305835 None:intergenic
CTAATGGAGTGACACATGGA+AGG 0.642974 5:+15302643 None:intergenic
TAACCGGGGCTCATATCCGG+AGG 0.647535 5:+15305915 MsG0580025206.01.T01:CDS
TTGGAGACAACAACTCTCTG+TGG 0.648215 5:-15305808 None:intergenic
GCAAAATGCACCAAGCCTTG+TGG 0.659663 5:+15304698 MsG0580025206.01.T01:CDS
TCTTGTTGAAGAACTCACAA+AGG 0.659944 5:+15307513 MsG0580025206.01.T01:three_prime_UTR
ACAATGAGAGATATCACAAG+TGG 0.667920 5:+15306112 MsG0580025206.01.T01:CDS
AATCTAGACAGTGTCAAAGG+TGG 0.669822 5:-15307262 None:intergenic
GGAAAAGGTTATGTGGTCCG+AGG 0.675521 5:+15305398 MsG0580025206.01.T01:CDS
TATCCGGAGGAAGCTTGAAG+CGG 0.676693 5:+15305928 MsG0580025206.01.T01:CDS
CGTTTGAAATGCGAACTGCA+AGG 0.679951 5:+15305365 MsG0580025206.01.T01:CDS
GCTCACAAGAGACATCATAG+TGG 0.683907 5:+15302762 MsG0580025206.01.T01:CDS
AATCTCTACTGATAAATTCG+GGG 0.689534 5:-15305592 None:intergenic
GTGAAGGATACAACGAAACA+CGG 0.690209 5:-15307363 None:intergenic
ACTTGATTCTAGTGACGTCG+AGG 0.703659 5:+15306938 MsG0580025206.01.T01:CDS
CACACAGATGCAGGACTCGG+AGG 0.714130 5:-15306573 None:intergenic
CCAACAGTTCTTATGAACGA+CGG 0.720547 5:+15306136 MsG0580025206.01.T01:CDS
GAATCAACAAGATCATACGA+AGG 0.725807 5:+15305542 MsG0580025206.01.T01:CDS
ACAGTTCTTATGAACGACGG+TGG 0.731871 5:+15306139 MsG0580025206.01.T01:CDS
AGAATTGGACTAGTTCAACA+GGG 0.749710 5:+15305291 MsG0580025206.01.T01:CDS
TCTTTAGGAGAACTACACTG+AGG 0.805453 5:+15306548 MsG0580025206.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATAAATAAAAACAAAAT+TGG - Chr5:15303865-15303884 None:intergenic 10.0%
!! AAAAGAATAAGTGAAAATAT+GGG + Chr5:15304780-15304799 MsG0580025206.01.T01:CDS 15.0%
!! AACAAGATAATAAAAAATCA+AGG + Chr5:15306339-15306358 MsG0580025206.01.T01:intron 15.0%
!! ACAAGATAATAAAAAATCAA+GGG + Chr5:15306340-15306359 MsG0580025206.01.T01:intron 15.0%
!! CTTTAAACATGTTATAATTA+TGG + Chr5:15304096-15304115 MsG0580025206.01.T01:intron 15.0%
!! GGTGTAAAAAATAATAAAAA+TGG - Chr5:15303892-15303911 None:intergenic 15.0%
!! TAAAAGAATAAGTGAAAATA+TGG + Chr5:15304779-15304798 MsG0580025206.01.T01:CDS 15.0%
!! TCTTAACTTTATATTTATTG+TGG + Chr5:15306300-15306319 MsG0580025206.01.T01:intron 15.0%
!!! ATTATTTTTTACACCATTTT+TGG + Chr5:15303897-15303916 MsG0580025206.01.T01:intron 15.0%
!! AAAGAATAAGTGAAAATATG+GGG + Chr5:15304781-15304800 MsG0580025206.01.T01:CDS 20.0%
!! AACTTTATATTTATTGTGGA+GGG + Chr5:15306304-15306323 MsG0580025206.01.T01:intron 20.0%
!! ACATATAGTTAAAAAACCAA+GGG - Chr5:15303785-15303804 None:intergenic 20.0%
!! ACTAAATTCAATTCAACAAT+TGG - Chr5:15304554-15304573 None:intergenic 20.0%
!! CATAATAAAACAACATTAAC+CGG - Chr5:15306791-15306810 None:intergenic 20.0%
!! CATATTGAACATAATTACAA+TGG - Chr5:15304318-15304337 None:intergenic 20.0%
!! CTATATGTAGGAATTAAATT+TGG + Chr5:15303797-15303816 MsG0580025206.01.T01:intron 20.0%
!! GTTATAAGATTTGATCATTA+AGG - Chr5:15305198-15305217 None:intergenic 20.0%
!! TAACTTTATATTTATTGTGG+AGG + Chr5:15306303-15306322 MsG0580025206.01.T01:intron 20.0%
!! TACATATAGTTAAAAAACCA+AGG - Chr5:15303786-15303805 None:intergenic 20.0%
!!! AACTAAAATACCATTTTGAT+TGG - Chr5:15303577-15303596 None:intergenic 20.0%
!!! ACTTTTTTGAATTCAATCAA+GGG + Chr5:15302718-15302737 MsG0580025206.01.T01:CDS 20.0%
!!! GAAATATGATAGTATTTTTC+TGG - Chr5:15303234-15303253 None:intergenic 20.0%
!!! TTGGTTTTTTAACTATATGT+AGG + Chr5:15303785-15303804 MsG0580025206.01.T01:intron 20.0%
! AACCACTTGATTTAATATGA+TGG - Chr5:15303141-15303160 None:intergenic 25.0%
! AATTTATCAGTAGAGATTCA+AGG + Chr5:15305597-15305616 MsG0580025206.01.T01:CDS 25.0%
! AGTTTGAAAAGATATTCACT+CGG - Chr5:15306860-15306879 None:intergenic 25.0%
! ATCTTAAAACCGCAATAAAA+AGG + Chr5:15306430-15306449 MsG0580025206.01.T01:intron 25.0%
! ATGAAATATAAAGGTCATCA+TGG - Chr5:15306487-15306506 None:intergenic 25.0%
! CAACTCTGAATGAAATATAA+AGG - Chr5:15306496-15306515 None:intergenic 25.0%
! CAAGAACTATGGTTTATATT+TGG - Chr5:15304508-15304527 None:intergenic 25.0%
! CAATGAAGAGATCAATATAT+TGG + Chr5:15307459-15307478 MsG0580025206.01.T01:three_prime_UTR 25.0%
! GAAATGAATCGAATTCAATA+TGG - Chr5:15304881-15304900 None:intergenic 25.0%
! GAATGATGAAAATTCTATGA+AGG + Chr5:15307165-15307184 MsG0580025206.01.T01:three_prime_UTR 25.0%
! GCTACAAAACTATATCAATT+AGG - Chr5:15307648-15307667 None:intergenic 25.0%
! TAAAAACAATCAAGCAAAAG+AGG - Chr5:15302962-15302981 None:intergenic 25.0%
! TACATGATCATTACACAAAT+TGG + Chr5:15307612-15307631 MsG0580025206.01.T01:three_prime_UTR 25.0%
! TATTCAATCATGAAGAGAAT+TGG + Chr5:15305276-15305295 MsG0580025206.01.T01:CDS 25.0%
! TCTTTATTCACTTGATACTT+TGG + Chr5:15307396-15307415 MsG0580025206.01.T01:three_prime_UTR 25.0%
! TGAATCTCTACTGATAAATT+CGG - Chr5:15305597-15305616 None:intergenic 25.0%
! TTCAAAACAGAATTTCCAAT+AGG - Chr5:15307113-15307132 None:intergenic 25.0%
! TTTCACAAAGTTAAAGATGA+CGG + Chr5:15304897-15304916 MsG0580025206.01.T01:CDS 25.0%
!! CTTTTCTTGAATCAAAACTA+TGG - Chr5:15306768-15306787 None:intergenic 25.0%
!! GATTTATTTGCTTGTTGATT+TGG + Chr5:15306890-15306909 MsG0580025206.01.T01:intron 25.0%
!! TAGTATAGAAGATTTTCTTG+AGG + Chr5:15305331-15305350 MsG0580025206.01.T01:CDS 25.0%
!! TCACTTATTCTTTTATCTGA+TGG - Chr5:15304774-15304793 None:intergenic 25.0%
!!! AATTGATATAGTTTTGTAGC+TGG + Chr5:15307648-15307667 MsG0580025206.01.T01:three_prime_UTR 25.0%
!!! ATGACCAAGGTTTTAAAAAA+CGG + Chr5:15303283-15303302 MsG0580025206.01.T01:intron 25.0%
!!! ATTGTCAAGGTTCTAAAAAA+CGG - Chr5:15304293-15304312 None:intergenic 25.0%
!!! CACTTTTTTGAATTCAATCA+AGG + Chr5:15302717-15302736 MsG0580025206.01.T01:CDS 25.0%
!!! GTATTTTAGTTTGTGAGATT+TGG + Chr5:15303586-15303605 MsG0580025206.01.T01:intron 25.0%
!!! TTTTGACTGAATTTTCAAGT+TGG - Chr5:15303479-15303498 None:intergenic 25.0%
AAATACAAACAGGATCTTTC+AGG + Chr5:15305759-15305778 MsG0580025206.01.T01:CDS 30.0%
AATAATCGTTATTCAAACGC+TGG + Chr5:15304624-15304643 MsG0580025206.01.T01:CDS 30.0%
AATCTCTACTGATAAATTCG+GGG - Chr5:15305595-15305614 None:intergenic 30.0%
AATTACAATGGTCATTGTCA+AGG - Chr5:15304306-15304325 None:intergenic 30.0%
ACAAATCAAGCAAAATCTTG+TGG - Chr5:15307213-15307232 None:intergenic 30.0%
ACATATGAAGAGAAACTTAC+CGG - Chr5:15303097-15303116 None:intergenic 30.0%
AGCAAAACTGTATCTCAAAT+TGG - Chr5:15306023-15306042 None:intergenic 30.0%
AGTGAATAAAGAGACATATC+CGG - Chr5:15307388-15307407 None:intergenic 30.0%
ATAAACCATAGTTCTTGTTC+TGG + Chr5:15304511-15304530 MsG0580025206.01.T01:intron 30.0%
ATGCATATCTTGCTGAAATT+CGG + Chr5:15302870-15302889 MsG0580025206.01.T01:intron 30.0%
ATTATCAAGTAGAAGAAGAC+TGG + Chr5:15304595-15304614 MsG0580025206.01.T01:CDS 30.0%
ATTTCTTTCTCAGCGTTAAA+AGG - Chr5:15303371-15303390 None:intergenic 30.0%
ATTTGACGAGCAATAAGTTT+AGG - Chr5:15305464-15305483 None:intergenic 30.0%
CAATAAAGAGTTCCATACAT+TGG + Chr5:15307575-15307594 MsG0580025206.01.T01:three_prime_UTR 30.0%
CACATAATACAAGTATGCAA+AGG + Chr5:15305123-15305142 MsG0580025206.01.T01:CDS 30.0%
CACCATCATATTAAATCAAG+TGG + Chr5:15303136-15303155 MsG0580025206.01.T01:intron 30.0%
CATGAGTGAAGTGAATAATT+AGG + Chr5:15307760-15307779 MsG0580025206.01.T01:three_prime_UTR 30.0%
CTCTATAAATGACTGTTTCA+TGG + Chr5:15304438-15304457 MsG0580025206.01.T01:intron 30.0%
GAAACAGTCATTTATAGAGA+TGG - Chr5:15304437-15304456 None:intergenic 30.0%
GAAGAAACAGAAATACAAAC+AGG + Chr5:15305749-15305768 MsG0580025206.01.T01:CDS 30.0%
GAATAAGTCTTTGTTAAGAG+GGG + Chr5:15307073-15307092 MsG0580025206.01.T01:CDS 30.0%
GAATCTCTACTGATAAATTC+GGG - Chr5:15305596-15305615 None:intergenic 30.0%
GATCAATATATTGGAAAGAG+AGG + Chr5:15307468-15307487 MsG0580025206.01.T01:three_prime_UTR 30.0%
GGAATAAGTCTTTGTTAAGA+GGG + Chr5:15307072-15307091 MsG0580025206.01.T01:CDS 30.0%
GGGAAGAGAGAAAAAAATTA+CGG - Chr5:15302936-15302955 None:intergenic 30.0%
GTCTTTCTCAAGATTCTAAA+AGG - Chr5:15304343-15304362 None:intergenic 30.0%
TAATACCAGAACAAGAACTA+TGG - Chr5:15304519-15304538 None:intergenic 30.0%
TCATGATTGAATATGCAATC+AGG - Chr5:15305269-15305288 None:intergenic 30.0%
TGGAATAAGTCTTTGTTAAG+AGG + Chr5:15307071-15307090 MsG0580025206.01.T01:CDS 30.0%
TGGTAAGAGAAATCAATCAA+TGG + Chr5:15306060-15306079 MsG0580025206.01.T01:CDS 30.0%
TTTCTTTCTCAGCGTTAAAA+GGG - Chr5:15303370-15303389 None:intergenic 30.0%
! TATAGAAGATTTTCTTGAGG+AGG + Chr5:15305334-15305353 MsG0580025206.01.T01:CDS 30.0%
! TTTGAAATGTGCAGATGAAT+GGG + Chr5:15305715-15305734 MsG0580025206.01.T01:CDS 30.0%
! TTTTCAAACAAGGGAACAAA+TGG + Chr5:15304810-15304829 MsG0580025206.01.T01:CDS 30.0%
! TTTTCTGCTATATGCTCTTT+AGG + Chr5:15306533-15306552 MsG0580025206.01.T01:intron 30.0%
! TTTTTGAATTCAATCAAGGG+AGG + Chr5:15302721-15302740 MsG0580025206.01.T01:CDS 30.0%
!!! AGTTTTGATTCAAGAAAAGC+CGG + Chr5:15306769-15306788 MsG0580025206.01.T01:intron 30.0%
!!! GAAATTCTGTTTTGAAGAAG+TGG + Chr5:15307117-15307136 MsG0580025206.01.T01:CDS 30.0%
!!! GGTTTTAGAAAATTCAACAG+TGG + Chr5:15303620-15303639 MsG0580025206.01.T01:intron 30.0%
!!! TGACCAAGGTTTTAAAAAAC+GGG + Chr5:15303284-15303303 MsG0580025206.01.T01:intron 30.0%
!!! TTTTGAAATGTGCAGATGAA+TGG + Chr5:15305714-15305733 MsG0580025206.01.T01:CDS 30.0%
ACAATCAAGCAAAAGAGGAA+AGG - Chr5:15302957-15302976 None:intergenic 35.0%
ACAATGAGAGATATCACAAG+TGG + Chr5:15306112-15306131 MsG0580025206.01.T01:CDS 35.0%
AGGAACTGTTGAAGTTAGTA+TGG + Chr5:15307332-15307351 MsG0580025206.01.T01:three_prime_UTR 35.0%
ATTGTGGAGGGATAAATAGA+TGG + Chr5:15306316-15306335 MsG0580025206.01.T01:intron 35.0%
ATTTGGAAAGCTTCTACTAG+AGG + Chr5:15305880-15305899 MsG0580025206.01.T01:CDS 35.0%
CAATCAAGCAAAAGAGGAAA+GGG - Chr5:15302956-15302975 None:intergenic 35.0%
CAATCAATGGTAGAATCACA+TGG + Chr5:15306073-15306092 MsG0580025206.01.T01:CDS 35.0%
CCGCAATAAAAAGGAATGAA+CGG + Chr5:15306439-15306458 MsG0580025206.01.T01:intron 35.0%
CTTGTGATATCTCTCATTGT+CGG - Chr5:15306112-15306131 None:intergenic 35.0%
GAATCAACAAGATCATACGA+AGG + Chr5:15305542-15305561 MsG0580025206.01.T01:CDS 35.0%
GAATCACTTTCAGTTGTTCT+TGG + Chr5:15307238-15307257 MsG0580025206.01.T01:three_prime_UTR 35.0%
GATACATATGCAAAGCCTAT+TGG + Chr5:15307095-15307114 MsG0580025206.01.T01:CDS 35.0%
GCGTGAAAATCCAATCAAAA+TGG + Chr5:15303564-15303583 MsG0580025206.01.T01:intron 35.0%
GGAACTGTTGAAGTTAGTAT+GGG + Chr5:15307333-15307352 MsG0580025206.01.T01:three_prime_UTR 35.0%
GGTTGAAAAGGAATGAGTAA+TGG - Chr5:15306195-15306214 None:intergenic 35.0%
GTTGAAACATCTCAGAAGTA+CGG + Chr5:15303055-15303074 MsG0580025206.01.T01:CDS 35.0%
TAAAGAGTTCCATACATTGG+TGG + Chr5:15307578-15307597 MsG0580025206.01.T01:three_prime_UTR 35.0%
TCAAGATCAGGAACATCATT+TGG + Chr5:15305863-15305882 MsG0580025206.01.T01:CDS 35.0%
TCTCTTATGTAAGATTCTGC+TGG - Chr5:15307017-15307036 None:intergenic 35.0%
TCTTCTATACTATGTCTACC+TGG - Chr5:15305323-15305342 None:intergenic 35.0%
TCTTGTTGAAGAACTCACAA+AGG + Chr5:15307513-15307532 MsG0580025206.01.T01:three_prime_UTR 35.0%
TGAAAAGGAATGAGTAATGG+AGG - Chr5:15306192-15306211 None:intergenic 35.0%
TGCATATCTTGCTGAAATTC+GGG + Chr5:15302871-15302890 MsG0580025206.01.T01:intron 35.0%
TGGTTAATGAGCTTCAGTTA+AGG + Chr5:15303156-15303175 MsG0580025206.01.T01:intron 35.0%
TGTTCAAAGTTTGCCGAAAT+CGG + Chr5:15305041-15305060 MsG0580025206.01.T01:CDS 35.0%
TTCACTCATGTTATGATGAG+AGG + Chr5:15302826-15302845 MsG0580025206.01.T01:intron 35.0%
TTCTTTCTCAGCGTTAAAAG+GGG - Chr5:15303369-15303388 None:intergenic 35.0%
! AAAAACAAAATTGGCTCAGC+TGG - Chr5:15303856-15303875 None:intergenic 35.0%
! AACATTTGAGTTCAATCCCT+TGG + Chr5:15307425-15307444 MsG0580025206.01.T01:three_prime_UTR 35.0%
! AAGGGTGCAGATATGAAAAA+GGG - Chr5:15303767-15303786 None:intergenic 35.0%
! AGAGATTTACTTGTTGCTTC+TGG + Chr5:15307032-15307051 MsG0580025206.01.T01:CDS 35.0%
! AGGCATTAAAGTGCCAAAAA+TGG - Chr5:15303913-15303932 None:intergenic 35.0%
! AGTCTTTTGGTAGACTGTAT+GGG + Chr5:15302684-15302703 MsG0580025206.01.T01:exon 35.0%
! CATTGATTATTCCAGACCAA+GGG - Chr5:15307444-15307463 None:intergenic 35.0%
! CCGTTCATTCCTTTTTATTG+CGG - Chr5:15306442-15306461 None:intergenic 35.0%
! GAAAAGGAATGAGTAATGGA+GGG - Chr5:15306191-15306210 None:intergenic 35.0%
! GCAATAAGTTTAGGATCAGA+TGG - Chr5:15305455-15305474 None:intergenic 35.0%
! GGGAAGAAGTTTTCAAACAA+GGG + Chr5:15304801-15304820 MsG0580025206.01.T01:CDS 35.0%
! TCATTGATTATTCCAGACCA+AGG - Chr5:15307445-15307464 None:intergenic 35.0%
!! AGAATTGGACTAGTTCAACA+GGG + Chr5:15305291-15305310 MsG0580025206.01.T01:CDS 35.0%
!! AGATACAGTTTTGCTCTAAG+AGG + Chr5:15306028-15306047 MsG0580025206.01.T01:CDS 35.0%
!! ATTTTGGAAAACAAAGGCGT+CGG + Chr5:15304943-15304962 MsG0580025206.01.T01:CDS 35.0%
!! CTGGTTTATACTTTGGTTCT+TGG + Chr5:15307051-15307070 MsG0580025206.01.T01:CDS 35.0%
!! GTTGCTTCTGGTTTATACTT+TGG + Chr5:15307044-15307063 MsG0580025206.01.T01:CDS 35.0%
!! TGAGATTTGGTGAACATTTG+AGG + Chr5:15303599-15303618 MsG0580025206.01.T01:intron 35.0%
!!! GATACAGTTTTGCTCTAAGA+GGG + Chr5:15306029-15306048 MsG0580025206.01.T01:CDS 35.0%
!!! GCCTTTGTTTTCCAAAATTC+CGG - Chr5:15304941-15304960 None:intergenic 35.0%
AAAAGGGGCAAAAACGGTAA+CGG - Chr5:15303354-15303373 None:intergenic 40.0%
AACTGTCGGAAAAGGTTATG+TGG + Chr5:15305391-15305410 MsG0580025206.01.T01:CDS 40.0%
AAGGATCTTACAAGGTTCCT+TGG - Chr5:15305830-15305849 None:intergenic 40.0%
AATCTAGACAGTGTCAAAGG+TGG - Chr5:15307265-15307284 None:intergenic 40.0%
ACAAGATCATACGAAGGTGA+AGG + Chr5:15305548-15305567 MsG0580025206.01.T01:CDS 40.0%
ACACATGGAAGGTGAAATTG+AGG + Chr5:15302654-15302673 MsG0580025206.01.T01:five_prime_UTR 40.0%
ACGAACAAGGGGATATAAGA+AGG - Chr5:15303256-15303275 None:intergenic 40.0%
ACGTGAAGAAAGGAAGAAGA+AGG + Chr5:15303666-15303685 MsG0580025206.01.T01:intron 40.0%
AGAGAATCTGAACAGCGAAA+AGG + Chr5:15305091-15305110 MsG0580025206.01.T01:CDS 40.0%
AGCATATAGGACAAAACTGC+AGG - Chr5:15303730-15303749 None:intergenic 40.0%
AGCGTTAAAAGGGGCAAAAA+CGG - Chr5:15303360-15303379 None:intergenic 40.0%
AGGATCGTTATCTTGAAACC+TGG + Chr5:15305242-15305261 MsG0580025206.01.T01:CDS 40.0%
AGGGTGCAGATATGAAAAAG+GGG - Chr5:15303766-15303785 None:intergenic 40.0%
AGGTTTCAAGATAACGATCC+TGG - Chr5:15305243-15305262 None:intergenic 40.0%
ATATAGGACAAAACTGCAGG+TGG - Chr5:15303727-15303746 None:intergenic 40.0%
ATGGAAGGAGTTCAGTTAGT+TGG + Chr5:15304829-15304848 MsG0580025206.01.T01:CDS 40.0%
CAAAAACGGCCGTTACAAAT+CGG + Chr5:15303316-15303335 MsG0580025206.01.T01:intron 40.0%
CAAACAAGGGAACAAATGGA+AGG + Chr5:15304814-15304833 MsG0580025206.01.T01:CDS 40.0%
CAAGGAAAAACTGTCGGAAA+AGG + Chr5:15305383-15305402 MsG0580025206.01.T01:CDS 40.0%
CCAACAGTTCTTATGAACGA+CGG + Chr5:15306136-15306155 MsG0580025206.01.T01:CDS 40.0%
CTGAATCTAGACAGTGTCAA+AGG - Chr5:15307268-15307287 None:intergenic 40.0%
CTTAGAGTTCTGCTCTTTGA+AGG - Chr5:15305158-15305177 None:intergenic 40.0%
GAACTGCAAGGAAAAACTGT+CGG + Chr5:15305377-15305396 MsG0580025206.01.T01:CDS 40.0%
GAATTCTTCTGCAGAAGTGA+GGG - Chr5:15306216-15306235 None:intergenic 40.0%
GATACAAATAACGGTCTTCG+CGG - Chr5:15304210-15304229 None:intergenic 40.0%
GATGTTCCTGATCTTGATAC+AGG - Chr5:15305860-15305879 None:intergenic 40.0%
GCTAGAAACACTTCCGATTT+CGG - Chr5:15305057-15305076 None:intergenic 40.0%
GGTCAATGATTGTTTCAGCT+AGG - Chr5:15303213-15303232 None:intergenic 40.0%
GTCATTGTTACCACGAACAA+GGG - Chr5:15303268-15303287 None:intergenic 40.0%
GTGAAGGATACAACGAAACA+CGG - Chr5:15307366-15307385 None:intergenic 40.0%
GTGCATAAGCAACAGCATAT+AGG - Chr5:15303743-15303762 None:intergenic 40.0%
GTGTCTCAATATCACTTCCT+CGG - Chr5:15305418-15305437 None:intergenic 40.0%
GTTGTTCTTCACGTGAAGAA+AGG + Chr5:15303656-15303675 MsG0580025206.01.T01:intron 40.0%
TAAAGAGACATATCCGGTGA+AGG - Chr5:15307382-15307401 None:intergenic 40.0%
TATAGGACAAAACTGCAGGT+GGG - Chr5:15303726-15303745 None:intergenic 40.0%
TATCCAATCGATCAAGCACA+CGG + Chr5:15304676-15304695 MsG0580025206.01.T01:CDS 40.0%
TATGATGTCTCTTGTGAGCA+TGG - Chr5:15302761-15302780 None:intergenic 40.0%
TCATTGTTACCACGAACAAG+GGG - Chr5:15303267-15303286 None:intergenic 40.0%
TGAATTCAATCAAGGGAGGA+TGG + Chr5:15302725-15302744 MsG0580025206.01.T01:CDS 40.0%
TGAGCAGACTGAATTTGAGT+CGG - Chr5:15305522-15305541 None:intergenic 40.0%
TGATATCTCTCATTGTCGGA+CGG - Chr5:15306108-15306127 None:intergenic 40.0%
TGGAAGGAGTTCAGTTAGTT+GGG + Chr5:15304830-15304849 MsG0580025206.01.T01:CDS 40.0%
TGTTTCGTTGTATCCTTCAC+CGG + Chr5:15307366-15307385 MsG0580025206.01.T01:three_prime_UTR 40.0%
TTACCGGTAATTCTCCTTCT+GGG - Chr5:15303081-15303100 None:intergenic 40.0%
TTCAACAGTTCCTTTCCTTG+AGG - Chr5:15307325-15307344 None:intergenic 40.0%
TTCAAGATAACGATCCTGGT+TGG - Chr5:15305239-15305258 None:intergenic 40.0%
TTCTTATATCCCCTTGTTCG+TGG + Chr5:15303255-15303274 MsG0580025206.01.T01:intron 40.0%
TTGAATATGCAATCAGGACC+AGG - Chr5:15305263-15305282 None:intergenic 40.0%
! CAAGGGTGCAGATATGAAAA+AGG - Chr5:15303768-15303787 None:intergenic 40.0%
! CTGATGTCTCTGAAAACTTG+TGG - Chr5:15306690-15306709 None:intergenic 40.0%
! CTTTTATCTGATGGAGCAAC+AGG - Chr5:15304765-15304784 None:intergenic 40.0%
! GAGTCTTTTGGTAGACTGTA+TGG + Chr5:15302683-15302702 MsG0580025206.01.T01:exon 40.0%
! GCAGTGTTCATGAAGACTTT+TGG + Chr5:15306598-15306617 MsG0580025206.01.T01:CDS 40.0%
! GGGGAAGAAGTTTTCAAACA+AGG + Chr5:15304800-15304819 MsG0580025206.01.T01:CDS 40.0%
! GTGTTCATGAAGACTTTTGG+AGG + Chr5:15306601-15306620 MsG0580025206.01.T01:CDS 40.0%
! TCTTTAGGAGAACTACACTG+AGG + Chr5:15306548-15306567 MsG0580025206.01.T01:intron 40.0%
! TTGAGGACATGAGAGTCTTT+TGG + Chr5:15302671-15302690 MsG0580025206.01.T01:five_prime_UTR 40.0%
! TTTTGGTAGACTGTATGGGA+GGG + Chr5:15302688-15302707 MsG0580025206.01.T01:exon 40.0%
!! AAGGTTCTAAAAAACGGTCG+CGG - Chr5:15304287-15304306 None:intergenic 40.0%
!! CTTTTTCATATCTGCACCCT+TGG + Chr5:15303766-15303785 MsG0580025206.01.T01:intron 40.0%
!! GAGAATTGGACTAGTTCAAC+AGG + Chr5:15305290-15305309 MsG0580025206.01.T01:CDS 40.0%
!! GCCGGAATTTTGGAAAACAA+AGG + Chr5:15304937-15304956 MsG0580025206.01.T01:CDS 40.0%
!! TTGTTGATTTGGCAGAGCTA+AGG + Chr5:15306901-15306920 MsG0580025206.01.T01:intron 40.0%
!! TTTCAAGTTGGAGTCCGTAA+CGG - Chr5:15303467-15303486 None:intergenic 40.0%
!!! ATTTGTAACGGCCGTTTTTG+CGG - Chr5:15303316-15303335 None:intergenic 40.0%
!!! CGTCCCGTTTTTTAAAACCT+TGG - Chr5:15303290-15303309 None:intergenic 40.0%
!!! GTTTTCCCCCTTATTTTCCT+CGG + Chr5:15302893-15302912 MsG0580025206.01.T01:intron 40.0%
!!! TTCTGAAGTTCCTTTTCCTG+TGG - Chr5:15304975-15304994 None:intergenic 40.0%
!!! TTTTGGAAAACAAAGGCGTC+GGG + Chr5:15304944-15304963 MsG0580025206.01.T01:CDS 40.0%
AACAGTTCCTTTCCTTGAGG+CGG - Chr5:15307322-15307341 None:intergenic 45.0%
ACAGAGAGTTGTTGTCTCCA+AGG + Chr5:15305810-15305829 MsG0580025206.01.T01:CDS 45.0%
ACAGTTCTTATGAACGACGG+TGG + Chr5:15306139-15306158 MsG0580025206.01.T01:CDS 45.0%
ACATCAAGCAGCAAGGTTTC+AGG + Chr5:15305016-15305035 MsG0580025206.01.T01:CDS 45.0%
ACTTGATTCTAGTGACGTCG+AGG + Chr5:15306938-15306957 MsG0580025206.01.T01:CDS 45.0%
AGTTCAACAGGGACTTTACC+AGG + Chr5:15305302-15305321 MsG0580025206.01.T01:CDS 45.0%
ATAGGACAAAACTGCAGGTG+GGG - Chr5:15303725-15303744 None:intergenic 45.0%
ATATCGCCGTTACAGCGTTA+CGG + Chr5:15303399-15303418 MsG0580025206.01.T01:intron 45.0%
ATCTTGAGAAAGACCCCTCA+AGG + Chr5:15304349-15304368 MsG0580025206.01.T01:intron 45.0%
ATTCAGACTCAGACGGTTTC+TGG - Chr5:15306977-15306996 None:intergenic 45.0%
CCGTCGTTCATAAGAACTGT+TGG - Chr5:15306139-15306158 None:intergenic 45.0%
CGAATTCTTCTGCAGAAGTG+AGG - Chr5:15306217-15306236 None:intergenic 45.0%
CTACTCTCCTACAACCTTGA+GGG - Chr5:15304366-15304385 None:intergenic 45.0%
CTGATAAATTCGGGGACACT+TGG - Chr5:15305587-15305606 None:intergenic 45.0%
CTTACCGGTAATTCTCCTTC+TGG - Chr5:15303082-15303101 None:intergenic 45.0%
CTTGTGAGCATGGACTTTCT+TGG - Chr5:15302751-15302770 None:intergenic 45.0%
GAAACCGTCTGAGTCTGAAT+TGG + Chr5:15306977-15306996 MsG0580025206.01.T01:CDS 45.0%
GAAAGCTTCTACTAGAGGAC+CGG + Chr5:15305885-15305904 MsG0580025206.01.T01:CDS 45.0%
GAGCAGACAAGGATCTTACA+AGG - Chr5:15305838-15305857 None:intergenic 45.0%
GCAACAGGTTTAGTGTCTAC+AGG - Chr5:15304750-15304769 None:intergenic 45.0%
GCTCACAAGAGACATCATAG+TGG + Chr5:15302762-15302781 MsG0580025206.01.T01:CDS 45.0%
GGACGCTGCGATACAAATAA+CGG - Chr5:15304219-15304238 None:intergenic 45.0%
GGAGAGTAGAGCACATGTAT+AGG + Chr5:15304377-15304396 MsG0580025206.01.T01:intron 45.0%
GGGTGCAGATATGAAAAAGG+GGG - Chr5:15303765-15303784 None:intergenic 45.0%
GGTCATTGTTACCACGAACA+AGG - Chr5:15303269-15303288 None:intergenic 45.0%
GTAGAGCACATGTATAGGCT+TGG + Chr5:15304382-15304401 MsG0580025206.01.T01:intron 45.0%
GTGACAGCCGAGGAAAATAA+GGG - Chr5:15302903-15302922 None:intergenic 45.0%
GTGTGAGTGTGTGTGATGTA+GGG + Chr5:15307708-15307727 MsG0580025206.01.T01:three_prime_UTR 45.0%
GTTCGTGGTAACAATGACCA+AGG + Chr5:15303270-15303289 MsG0580025206.01.T01:intron 45.0%
TACTCTCCTACAACCTTGAG+GGG - Chr5:15304365-15304384 None:intergenic 45.0%
TAGATGCATCTTCTCCAACC+AGG + Chr5:15305222-15305241 MsG0580025206.01.T01:CDS 45.0%
TCCATACATTGGTGGAGCAA+GGG + Chr5:15307586-15307605 MsG0580025206.01.T01:three_prime_UTR 45.0%
TCGTCTCTTGAGGACAAATC+AGG - Chr5:15306657-15306676 None:intergenic 45.0%
TCTACTCTCCTACAACCTTG+AGG - Chr5:15304367-15304386 None:intergenic 45.0%
TCTGCTCCTGTATCAAGATC+AGG + Chr5:15305851-15305870 MsG0580025206.01.T01:CDS 45.0%
TCTTGATACAGGAGCAGACA+AGG - Chr5:15305849-15305868 None:intergenic 45.0%
TGACAGCCGAGGAAAATAAG+GGG - Chr5:15302902-15302921 None:intergenic 45.0%
TGCACCAATTCAGACTCAGA+CGG - Chr5:15306984-15307003 None:intergenic 45.0%
TGCAGAAGTGAGGGTTGAAA+AGG - Chr5:15306207-15306226 None:intergenic 45.0%
TGGACCACTTGATGCATCAA+GGG - Chr5:15303825-15303844 None:intergenic 45.0%
TGGCTCAGCTGGAATAAATC+TGG - Chr5:15303845-15303864 None:intergenic 45.0%
TGTCGCGATTTCGACTGTAA+CGG - Chr5:15304240-15304259 None:intergenic 45.0%
TGTGACAGCCGAGGAAAATA+AGG - Chr5:15302904-15302923 None:intergenic 45.0%
TGTGAGTGTGTGTGATGTAG+GGG + Chr5:15307709-15307728 MsG0580025206.01.T01:three_prime_UTR 45.0%
TGTGTGAGTGTGTGTGATGT+AGG + Chr5:15307707-15307726 MsG0580025206.01.T01:three_prime_UTR 45.0%
TTCCATACATTGGTGGAGCA+AGG + Chr5:15307585-15307604 MsG0580025206.01.T01:three_prime_UTR 45.0%
TTGAAGCACATCAAGCAGCA+AGG + Chr5:15305009-15305028 MsG0580025206.01.T01:CDS 45.0%
TTGAGTTCAATCCCTTGGTC+TGG + Chr5:15307430-15307449 MsG0580025206.01.T01:three_prime_UTR 45.0%
TTGGAGACAACAACTCTCTG+TGG - Chr5:15305811-15305830 None:intergenic 45.0%
! AAAGATGACGGCGATGATGA+TGG + Chr5:15304909-15304928 MsG0580025206.01.T01:CDS 45.0%
! CACATGTATAGGCTTGGTCT+TGG + Chr5:15304388-15304407 MsG0580025206.01.T01:intron 45.0%
! CGTTTGAAATGCGAACTGCA+AGG + Chr5:15305365-15305384 MsG0580025206.01.T01:CDS 45.0%
! CTTTTGGTAGACTGTATGGG+AGG + Chr5:15302687-15302706 MsG0580025206.01.T01:exon 45.0%
! GACATCAGCTCTGGTTTAAC+TGG + Chr5:15306702-15306721 MsG0580025206.01.T01:CDS 45.0%
! GTTTTCAGAGACATCAGCTC+TGG + Chr5:15306693-15306712 MsG0580025206.01.T01:CDS 45.0%
! TTTTAACCGGGGCTCATATC+CGG + Chr5:15305912-15305931 MsG0580025206.01.T01:CDS 45.0%
!! ATGTAGGGGGTATTGAGTTG+TGG + Chr5:15307723-15307742 MsG0580025206.01.T01:three_prime_UTR 45.0%
!! CTGCCGATACCGATTTGTAA+CGG - Chr5:15303328-15303347 None:intergenic 45.0%
!! TTACAAATCGGTATCGGCAG+CGG + Chr5:15303328-15303347 MsG0580025206.01.T01:intron 45.0%
!!! ACAGTTTTGCTCTAAGAGGG+AGG + Chr5:15306032-15306051 MsG0580025206.01.T01:CDS 45.0%
!!! GCTCTAAGAGGGAGGATTTT+TGG + Chr5:15306040-15306059 MsG0580025206.01.T01:CDS 45.0%
!!! AATTTTTATAAATAAAAAAG+AGG - Chr5:15303933-15303952 None:intergenic 5.0%
ACCCTTGCTCCACCAATGTA+TGG - Chr5:15307590-15307609 None:intergenic 50.0%
ACGGGACGTTACCGCAAAAA+CGG + Chr5:15303302-15303321 MsG0580025206.01.T01:intron 50.0%
CGGCCGTTACAAATCGGTAT+CGG + Chr5:15303322-15303341 MsG0580025206.01.T01:intron 50.0%
CTGGACCACTTGATGCATCA+AGG - Chr5:15303826-15303845 None:intergenic 50.0%
GAAAGACCCCTCAAGGTTGT+AGG + Chr5:15304356-15304375 MsG0580025206.01.T01:intron 50.0%
GACAGCCGAGGAAAATAAGG+GGG - Chr5:15302901-15302920 None:intergenic 50.0%
GCAAAATGCACCAAGCCTTG+TGG + Chr5:15304698-15304717 MsG0580025206.01.T01:CDS 50.0%
GGAAAAGGTTATGTGGTCCG+AGG + Chr5:15305398-15305417 MsG0580025206.01.T01:CDS 50.0%
GGACCACTTGATGCATCAAG+GGG - Chr5:15303824-15303843 None:intergenic 50.0%
GTGAGTGTGTGTGATGTAGG+GGG + Chr5:15307710-15307729 MsG0580025206.01.T01:three_prime_UTR 50.0%
TATCCGGAGGAAGCTTGAAG+CGG + Chr5:15305928-15305947 MsG0580025206.01.T01:CDS 50.0%
TCAAGAACATGTGACAGCCG+AGG - Chr5:15302913-15302932 None:intergenic 50.0%
TCGGGAACATCCACAGGAAA+AGG + Chr5:15304962-15304981 MsG0580025206.01.T01:CDS 50.0%
TTGCCGTGTGCTTGATCGAT+TGG - Chr5:15304682-15304701 None:intergenic 50.0%
! GATGGATGGAGCCGGAATTT+TGG + Chr5:15304927-15304946 MsG0580025206.01.T01:CDS 50.0%
!! AGGACCGGCACATTTTAACC+GGG + Chr5:15305900-15305919 MsG0580025206.01.T01:CDS 50.0%
!! ATGACGGCGATGATGATGGA+TGG + Chr5:15304913-15304932 MsG0580025206.01.T01:CDS 50.0%
!! GAGGACCGGCACATTTTAAC+CGG + Chr5:15305899-15305918 MsG0580025206.01.T01:CDS 50.0%
ACACTGCTGCACACAGATGC+AGG - Chr5:15306585-15306604 None:intergenic 55.0%
ACGACCGTGAAACGCCGTTA+CGG + Chr5:15303431-15303450 MsG0580025206.01.T01:intron 55.0%
ACGGCGTTTCACGGTCGTAA+CGG - Chr5:15303429-15303448 None:intergenic 55.0%
ATCAGCCTTGCCACAAGGCT+TGG - Chr5:15304711-15304730 None:intergenic 55.0%
CAACCGCTTCAAGCTTCCTC+CGG - Chr5:15305934-15305953 None:intergenic 55.0%
CACAGCAGTCTCGTCTCTTG+AGG - Chr5:15306667-15306686 None:intergenic 55.0%
CCTTCCTTCCTTGTTGACCG+CGG + Chr5:15303698-15303717 MsG0580025206.01.T01:intron 55.0%
CGGCCCAGAAGGAGAATTAC+CGG + Chr5:15303075-15303094 MsG0580025206.01.T01:CDS 55.0%
CGGTCAACAAGGAAGGAAGG+AGG - Chr5:15303698-15303717 None:intergenic 55.0%
CTGCACACAGATGCAGGACT+CGG - Chr5:15306579-15306598 None:intergenic 55.0%
CTTCCTTCCTTGTTGACCGC+GGG + Chr5:15303699-15303718 MsG0580025206.01.T01:intron 55.0%
GAGCCCCGGTTAAAATGTGC+CGG - Chr5:15305907-15305926 None:intergenic 55.0%
GGACCCCTTGATGCATCAAG+TGG + Chr5:15303818-15303837 MsG0580025206.01.T01:intron 55.0%
GGCGTTCCGTAACGCTGTAA+CGG - Chr5:15303408-15303427 None:intergenic 55.0%
! AAGCCTTGTGGCAAGGCTGA+TGG + Chr5:15304710-15304729 MsG0580025206.01.T01:CDS 55.0%
! AGCCTTGTGGCAAGGCTGAT+GGG + Chr5:15304711-15304730 MsG0580025206.01.T01:CDS 55.0%
! ATGCACCAAGCCTTGTGGCA+AGG + Chr5:15304703-15304722 MsG0580025206.01.T01:CDS 55.0%
! TCTCAGAAGTACGGCCCAGA+AGG + Chr5:15303064-15303083 MsG0580025206.01.T01:CDS 55.0%
!! GCGATGATGATGGATGGAGC+CGG + Chr5:15304919-15304938 MsG0580025206.01.T01:CDS 55.0%
!! GGACCGGCACATTTTAACCG+GGG + Chr5:15305901-15305920 MsG0580025206.01.T01:CDS 55.0%
ACCCCATCAGCCTTGCCACA+AGG - Chr5:15304716-15304735 None:intergenic 60.0%
CACACAGATGCAGGACTCGG+AGG - Chr5:15306576-15306595 None:intergenic 60.0%
CCGCGGTCAACAAGGAAGGA+AGG - Chr5:15303701-15303720 None:intergenic 60.0%
CTTCCTCCGGATATGAGCCC+CGG - Chr5:15305921-15305940 None:intergenic 60.0%
GAGTCCGTAACGGCGTTTCG+CGG - Chr5:15303457-15303476 None:intergenic 60.0%
GCCTTGTGGCAAGGCTGATG+GGG + Chr5:15304712-15304731 MsG0580025206.01.T01:CDS 60.0%
GTTGTCGCCGCCTCAAGGAA+AGG + Chr5:15307312-15307331 MsG0580025206.01.T01:three_prime_UTR 60.0%
TAACCGGGGCTCATATCCGG+AGG + Chr5:15305915-15305934 MsG0580025206.01.T01:CDS 60.0%
TCCATGTTGTCGCCGCCTCA+AGG + Chr5:15307307-15307326 MsG0580025206.01.T01:three_prime_UTR 60.0%
TCCTTGAGGCGGCGACAACA+TGG - Chr5:15307311-15307330 None:intergenic 60.0%
!! AAGGCGTCGGGAACATCCAC+AGG + Chr5:15304956-15304975 MsG0580025206.01.T01:CDS 60.0%
AAAACTGCAGGTGGGGCCCG+CGG - Chr5:15303718-15303737 None:intergenic 65.0%
ACGGCCGCGAAACGCCGTTA+CGG + Chr5:15303450-15303469 MsG0580025206.01.T01:intron 65.0%
ACGGCGTTTCGCGGCCGTAA+CGG - Chr5:15303448-15303467 None:intergenic 65.0%
GCGGCCGTAACGGCGTTTCA+CGG - Chr5:15303438-15303457 None:intergenic 65.0%
TCGCGATCGCGGTCGCGTTA+AGG - Chr5:15304264-15304283 None:intergenic 65.0%
AACGGTCGCGGTCGCGATCG+CGG - Chr5:15304275-15304294 None:intergenic 70.0%
GGGCCCGCGGTCAACAAGGA+AGG - Chr5:15303705-15303724 None:intergenic 70.0%
GGTGGGGCCCGCGGTCAACA+AGG - Chr5:15303709-15303728 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 15302650 15307823 15302650 ID=MsG0580025206.01;Name=MsG0580025206.01
Chr5 mRNA 15302650 15307823 15302650 ID=MsG0580025206.01.T01;Parent=MsG0580025206.01;Name=MsG0580025206.01.T01;_AED=0.27;_eAED=0.27;_QI=52|1|1|1|1|1|5|663|717
Chr5 exon 15302650 15302783 15302650 ID=MsG0580025206.01.T01:exon:6198;Parent=MsG0580025206.01.T01
Chr5 exon 15303020 15303096 15303020 ID=MsG0580025206.01.T01:exon:6199;Parent=MsG0580025206.01.T01
Chr5 exon 15304591 15306171 15304591 ID=MsG0580025206.01.T01:exon:6200;Parent=MsG0580025206.01.T01
Chr5 exon 15306555 15306723 15306555 ID=MsG0580025206.01.T01:exon:6201;Parent=MsG0580025206.01.T01
Chr5 exon 15306916 15307823 15306916 ID=MsG0580025206.01.T01:exon:6202;Parent=MsG0580025206.01.T01
Chr5 five_prime_UTR 15302650 15302701 15302650 ID=MsG0580025206.01.T01:five_prime_utr;Parent=MsG0580025206.01.T01
Chr5 CDS 15302702 15302783 15302702 ID=MsG0580025206.01.T01:cds;Parent=MsG0580025206.01.T01
Chr5 CDS 15303020 15303096 15303020 ID=MsG0580025206.01.T01:cds;Parent=MsG0580025206.01.T01
Chr5 CDS 15304591 15306171 15304591 ID=MsG0580025206.01.T01:cds;Parent=MsG0580025206.01.T01
Chr5 CDS 15306555 15306723 15306555 ID=MsG0580025206.01.T01:cds;Parent=MsG0580025206.01.T01
Chr5 CDS 15306916 15307160 15306916 ID=MsG0580025206.01.T01:cds;Parent=MsG0580025206.01.T01
Chr5 three_prime_UTR 15307161 15307823 15307161 ID=MsG0580025206.01.T01:three_prime_utr;Parent=MsG0580025206.01.T01
Gene Sequence

>MsG0580025206.01.T01

ATGGGAGGGTTATTACACTTTTTTGAATTCAATCAAGGGAGGATGGCCAAGAAAGTCCATGCTCACAAGAGACATCATAGTGACTTTGAAACTCATCGAAATAGTCTAGATCTGCAAGTTGAAACATCTCAGAAGTACGGCCCAGAAGGAGAATTACCGCACTATTATCAAGTAGAAGAAGACTGGTCTGAAAATAATCGTTATTCAAACGCTGGTTCAATGAAAAAGCTGATCAATGAAGAAATATCCAATCGATCAAGCACACGGCAAAATGCACCAAGCCTTGTGGCAAGGCTGATGGGGTTAGATATGATGCCTGTAGACACTAAACCTGTTGCTCCATCAGATAAAAGAATAAGTGAAAATATGGGGAAGAAGTTTTCAAACAAGGGAACAAATGGAAGGAGTTCAGTTAGTTGGGAATCTTCTAACTTTAATTCTTCTAGCCATATTGAATTCGATTCATTTCACAAAGTTAAAGATGACGGCGATGATGATGGATGGAGCCGGAATTTTGGAAAACAAAGGCGTCGGGAACATCCACAGGAAAAGGAACTTCAGAAATTCAAGAAAGAGTTTGAAGCACATCAAGCAGCAAGGTTTCAGGAATGTTCAAAGTTTGCCGAAATCGGAAGTGTTTCTAGCAGATTGATTTTTCAAGAGAATCTGAACAGCGAAAAGGTTGCACTTGCACATAATACAAGTATGCAAAGGAAAATATTTCCTTCAAAGAGCAGAACTCTAAGTAGAGACTTTGAAGAGTCCTTAATGATCAAATCTTATAACAGATTAGATGCATCTTCTCCAACCAGGATCGTTATCTTGAAACCTGGTCCTGATTGCATATTCAATCATGAAGAGAATTGGACTAGTTCAACAGGGACTTTACCAGGTAGACATAGTATAGAAGATTTTCTTGAGGAGGTGAAAGAGCGTTTGAAATGCGAACTGCAAGGAAAAACTGTCGGAAAAGGTTATGTGGTCCGAGGAAGTGATATTGAGACACTATGCAATAAAAAACCATCTGATCCTAAACTTATTGCTCGTCAAATAGTAAAGCAAGTCAAAGAAAATGTGACTAGAGATACCGACTCAAATTCAGTCTGCTCAGAATCAACAAGATCATACGAAGGTGAAGGACAATTCAATGAACCAAGTGTCCCCGAATTTATCAGTAGAGATTCAAGGAGTTACTTGTCAGAGAAGCTAACAGATGTTGTAAAAAGTGAAAGACATGATACATTTGACAATCACAGATTTAGACTCAAGAAGAGAGAAGATATTTTGAAATGTGCAGATGAATGGGAAATATCGAAAGAAGAAACAGAAATACAAACAGGATCTTTCAGGCATGAACAAGACAACAACATATTGTTCCACAGAGAGTTGTTGTCTCCAAGGAACCTTGTAAGATCCTTGTCTGCTCCTGTATCAAGATCAGGAACATCATTTGGAAAGCTTCTACTAGAGGACCGGCACATTTTAACCGGGGCTCATATCCGGAGGAAGCTTGAAGCGGTTGAAACTATGTCTTTTGATGTTAAAAAACAGAAAAAAGAGAGATTTAATAATATTAAAGAAAAAGTTTCCAATTTGAGATACAGTTTTGCTCTAAGAGGGAGGATTTTTGGTAAGAGAAATCAATCAATGGTAGAATCACATGGCACTGAATACCGTCCGACAATGAGAGATATCACAAGTGGTCCAACAGTTCTTATGAACGACGGTGGCGAGAGACATGAGAACTACACTGAGGTACCTCCGAGTCCTGCATCTGTGTGCAGCAGTGTTCATGAAGACTTTTGGAGGCGAACTGAATATTTAAGTCCAGTATCAACTCCTGATTTGTCCTCAAGAGACGAGACTGCTGTGCCACAAGTTTTCAGAGACATCAGCTCTGGTTTAACTGAGCTAAGGAGACAACTCAATCAACTTGATTCTAGTGACGTCGAGGACTTCACTACGAACCAGAAACCGTCTGAGTCTGAATTGGTGCAAATAAATGATCCAGCAGAATCTTACATAAGAGATTTACTTGTTGCTTCTGGTTTATACTTTGGTTCTTGGAATAAGTCTTTGTTAAGAGGGGATACATATGCAAAGCCTATTGGAAATTCTGTTTTGAAGAAGTGGAAGAATCTCATAAGAAATTGA

Protein sequence

>MsG0580025206.01.T01

MGGLLHFFEFNQGRMAKKVHAHKRHHSDFETHRNSLDLQVETSQKYGPEGELPHYYQVEEDWSENNRYSNAGSMKKLINEEISNRSSTRQNAPSLVARLMGLDMMPVDTKPVAPSDKRISENMGKKFSNKGTNGRSSVSWESSNFNSSSHIEFDSFHKVKDDGDDDGWSRNFGKQRRREHPQEKELQKFKKEFEAHQAARFQECSKFAEIGSVSSRLIFQENLNSEKVALAHNTSMQRKIFPSKSRTLSRDFEESLMIKSYNRLDASSPTRIVILKPGPDCIFNHEENWTSSTGTLPGRHSIEDFLEEVKERLKCELQGKTVGKGYVVRGSDIETLCNKKPSDPKLIARQIVKQVKENVTRDTDSNSVCSESTRSYEGEGQFNEPSVPEFISRDSRSYLSEKLTDVVKSERHDTFDNHRFRLKKREDILKCADEWEISKEETEIQTGSFRHEQDNNILFHRELLSPRNLVRSLSAPVSRSGTSFGKLLLEDRHILTGAHIRRKLEAVETMSFDVKKQKKERFNNIKEKVSNLRYSFALRGRIFGKRNQSMVESHGTEYRPTMRDITSGPTVLMNDGGERHENYTEVPPSPASVCSSVHEDFWRRTEYLSPVSTPDLSSRDETAVPQVFRDISSGLTELRRQLNQLDSSDVEDFTTNQKPSESELVQINDPAESYIRDLLVASGLYFGSWNKSLLRGDTYAKPIGNSVLKKWKNLIRN*