AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013534.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013534.01.T01 MTR_3g450710 92.034 477 31 1 1 477 1 470 0.0 884
MsG0380013534.01.T01 MTR_3g450690 88.470 477 52 1 1 477 1 474 0.0 831
MsG0380013534.01.T01 MTR_5g090830 67.568 481 132 9 4 475 4 469 0.0 652
MsG0380013534.01.T01 MTR_5g090810 66.736 481 136 9 4 475 4 469 0.0 645
MsG0380013534.01.T01 MTR_5g090880 64.151 477 148 7 9 475 8 471 0.0 588
MsG0380013534.01.T01 MTR_5g026320 36.076 474 267 14 7 475 14 456 1.00e-77 250
MsG0380013534.01.T01 MTR_8g075610 25.450 444 270 15 33 460 16 414 3.09e-30 122
MsG0380013534.01.T01 MTR_4g007540 25.855 468 288 18 10 460 2 427 2.74e-26 111
MsG0380013534.01.T01 MTR_4g097090 24.411 467 291 17 22 460 17 449 5.19e-26 110
MsG0380013534.01.T01 MTR_8g096530 26.382 398 236 14 32 416 28 381 1.21e-24 106
MsG0380013534.01.T01 MTR_4g127650 24.590 427 261 16 21 419 17 410 4.85e-24 104
MsG0380013534.01.T01 MTR_2g064495 23.874 444 280 16 33 460 25 426 1.58e-23 103
MsG0380013534.01.T01 MTR_2g105330 23.874 444 280 16 33 460 25 426 4.23e-23 101
MsG0380013534.01.T01 MTR_3g049150 22.249 418 272 12 68 460 51 440 9.96e-23 100
MsG0380013534.01.T01 MTR_1g053315 26.446 363 225 14 72 420 78 412 1.24e-21 97.8
MsG0380013534.01.T01 MTR_1g040175 25.472 424 237 17 72 461 64 442 1.88e-21 97.1
MsG0380013534.01.T01 MTR_7g114520 24.265 408 268 12 72 467 66 444 2.41e-21 97.1
MsG0380013534.01.T01 MTR_7g027175 26.196 397 238 14 32 416 37 390 3.07e-21 96.3
MsG0380013534.01.T01 MTR_3g098980 24.433 397 244 13 32 416 35 387 4.72e-21 95.9
MsG0380013534.01.T01 MTR_3g026950 23.009 452 295 14 32 460 23 444 9.87e-21 95.1
MsG0380013534.01.T01 MTR_1g040215 25.871 402 224 16 72 439 64 425 2.42e-20 94.0
MsG0380013534.01.T01 MTR_3g070170 25.709 494 273 21 22 468 20 466 5.13e-20 92.8
MsG0380013534.01.T01 MTR_5g076700 24.490 392 243 13 72 439 65 427 6.40e-20 92.4
MsG0380013534.01.T01 MTR_7g114550 23.204 362 230 10 72 420 65 391 2.05e-19 90.9
MsG0380013534.01.T01 MTR_7g086000 26.667 375 218 15 72 416 60 407 4.00e-19 90.1
MsG0380013534.01.T01 MTR_7g114560 22.740 365 234 10 69 420 62 391 9.53e-19 89.0
MsG0380013534.01.T01 MTR_1g081660 24.866 374 224 14 72 428 73 406 1.99e-18 87.8
MsG0380013534.01.T01 MTR_7g114470 23.426 397 242 16 72 439 66 429 2.40e-18 87.8
MsG0380013534.01.T01 MTR_3g101930 25.401 374 226 13 66 418 64 405 3.33e-18 87.4
MsG0380013534.01.T01 MTR_7g114490 24.468 376 241 13 72 435 65 409 9.98e-18 86.3
MsG0380013534.01.T01 MTR_7g084940 26.741 359 213 13 72 416 69 391 3.96e-17 84.0
MsG0380013534.01.T01 MTR_3g465990 26.266 316 204 11 72 377 68 364 1.69e-16 82.0
MsG0380013534.01.T01 MTR_4g055170 25.205 365 216 13 72 414 69 398 4.78e-16 80.9
MsG0380013534.01.T01 MTR_3g086020 23.855 415 252 16 11 416 5 364 1.72e-15 78.6
MsG0380013534.01.T01 MTR_3g465980 25.316 316 207 11 72 377 68 364 8.97e-15 76.6
MsG0380013534.01.T01 MTR_6g053810 26.543 324 187 13 70 371 69 363 9.23e-14 73.6
MsG0380013534.01.T01 MTR_3g112180 24.038 416 247 13 23 418 24 390 1.14e-13 73.2
MsG0380013534.01.T01 MTR_4g094842 24.936 389 237 16 46 416 45 396 2.61e-13 72.0
MsG0380013534.01.T01 MTR_4g094828 24.599 374 218 16 72 416 59 397 3.67e-12 68.6
MsG0380013534.01.T01 MTR_8g041770 25.106 470 250 19 24 461 22 421 6.19e-12 67.8
MsG0380013534.01.T01 MTR_7g110610 28.571 154 98 4 72 213 55 208 9.13e-12 67.0
MsG0380013534.01.T01 MTR_2g007880 23.573 403 247 12 32 416 40 399 9.80e-12 67.4
MsG0380013534.01.T01 MTR_2g015430 21.144 402 268 13 25 415 18 381 1.24e-11 67.0
MsG0380013534.01.T01 MTR_1g040320 33.333 150 81 5 72 211 64 204 1.69e-11 66.2
MsG0380013534.01.T01 MTR_1g035890 27.727 220 138 6 72 283 67 273 2.28e-11 66.2
MsG0380013534.01.T01 MTR_3g049140 23.967 242 151 8 232 460 16 237 2.61e-11 64.3
MsG0380013534.01.T01 MTR_1g040315 27.354 223 130 8 72 280 64 268 3.26e-11 65.5
MsG0380013534.01.T01 MTR_4g094832 26.205 332 194 12 100 416 83 378 9.80e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013534.01.T01 AT1G78990 56.688 471 174 7 9 476 11 454 4.48e-180 512
MsG0380013534.01.T01 AT1G32910 56.962 474 171 7 9 475 11 458 5.86e-178 507
MsG0380013534.01.T01 AT5G16410 50.731 479 193 11 8 475 33 479 1.52e-157 456
MsG0380013534.01.T01 AT1G31490 36.515 482 248 15 9 476 4 441 6.34e-81 258
MsG0380013534.01.T01 AT5G48930 26.211 454 282 18 20 460 14 427 5.54e-27 113
MsG0380013534.01.T01 AT5G41040 26.420 405 229 15 32 416 54 409 7.08e-26 110
MsG0380013534.01.T01 AT5G41040 26.303 403 232 14 32 416 38 393 7.27e-26 110
MsG0380013534.01.T01 AT5G57840 26.789 489 283 21 11 476 3 439 4.26e-24 105
MsG0380013534.01.T01 AT1G65450 25.737 373 214 14 72 427 72 398 5.16e-22 99.0
MsG0380013534.01.T01 AT3G48720 25.161 465 289 15 9 460 7 425 8.62e-22 97.8
MsG0380013534.01.T01 AT3G03480 24.528 477 267 17 5 441 13 436 1.66e-21 97.4
MsG0380013534.01.T01 AT2G19070 23.709 426 269 16 21 420 11 406 1.20e-20 94.7
MsG0380013534.01.T01 AT5G63560 26.279 430 246 17 6 416 2 379 7.44e-19 89.0
MsG0380013534.01.T01 AT1G28680 23.821 403 265 14 25 415 12 384 1.98e-18 88.2
MsG0380013534.01.T01 AT5G17540 24.313 473 264 20 8 439 6 425 3.90e-18 87.0
MsG0380013534.01.T01 AT1G24430 24.883 426 244 17 11 416 5 374 7.98e-18 85.9
MsG0380013534.01.T01 AT1G27620 25.054 463 271 19 18 460 16 422 1.84e-17 85.1
MsG0380013534.01.T01 AT1G03390 24.455 413 252 17 27 420 38 409 2.49e-17 84.7
MsG0380013534.01.T01 AT3G50270 25.995 377 219 17 65 416 55 396 7.78e-17 83.2
MsG0380013534.01.T01 AT3G50280 24.194 372 224 13 68 416 55 391 9.02e-17 82.8
MsG0380013534.01.T01 AT1G28680 24.403 377 250 13 25 387 12 367 1.22e-16 82.0
MsG0380013534.01.T01 AT5G01210 26.122 490 251 22 36 464 24 463 1.43e-16 82.4
MsG0380013534.01.T01 AT3G26040 24.545 440 234 20 11 416 3 378 6.41e-16 80.1
MsG0380013534.01.T01 AT5G67160 25.173 433 249 18 62 473 46 424 4.68e-15 77.4
MsG0380013534.01.T01 AT5G47950 24.306 288 176 8 7 287 2 254 3.56e-14 74.7
MsG0380013534.01.T01 AT3G30280 24.638 276 167 7 30 295 27 271 1.14e-13 73.2
MsG0380013534.01.T01 AT5G38130 24.599 374 220 15 67 416 74 409 1.87e-13 72.8
MsG0380013534.01.T01 AT5G07860 22.196 419 248 16 28 418 30 398 3.31e-13 72.0
MsG0380013534.01.T01 AT1G24420 22.418 397 244 16 83 464 76 423 5.91e-13 71.2
MsG0380013534.01.T01 AT1G24420 22.418 397 244 16 83 464 76 423 5.91e-13 71.2
MsG0380013534.01.T01 AT4G15390 25.926 270 157 10 30 287 29 267 7.24e-13 70.9
MsG0380013534.01.T01 AT4G15390 25.926 270 157 10 30 287 29 267 7.24e-13 70.9
MsG0380013534.01.T01 AT5G07080 23.398 359 232 11 72 415 70 400 1.71e-12 69.7
MsG0380013534.01.T01 AT3G50280 24.468 282 172 10 142 416 14 261 2.21e-12 68.6
MsG0380013534.01.T01 AT5G23970 23.709 426 248 17 11 416 3 371 2.48e-12 68.9
MsG0380013534.01.T01 AT2G25150 24.800 250 162 7 72 308 67 303 2.65e-11 65.9

Find 148 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGAAGACAAGGTGGATTT+TGG 0.150775 3:-40111956 MsG0380013534.01.T01:CDS
TGCCAATGCCAAGCCCTTTA+AGG 0.191687 3:-40111871 MsG0380013534.01.T01:CDS
CTTATTAACCTTTGAATCTA+TGG 0.198337 3:-40114880 MsG0380013534.01.T01:CDS
ACCCAATCACCATTCCTTAA+AGG 0.230515 3:+40111857 None:intergenic
GTCTCATATTATGCCTTTGC+AGG 0.248635 3:-40114822 MsG0380013534.01.T01:CDS
CATAGATTCAAAGGTTAATA+AGG 0.252094 3:+40114881 None:intergenic
GCAACGATGACACACTATTT+TGG 0.255431 3:-40112214 MsG0380013534.01.T01:CDS
ACAACGGAGGAGCACTTCTT+AGG 0.274268 3:-40112088 MsG0380013534.01.T01:CDS
GAAGGCATTGGCTAAGGTTT+TGG 0.280833 3:-40114844 MsG0380013534.01.T01:CDS
AGCACGCCATGCTTCCTCTT+TGG 0.295076 3:+40114657 None:intergenic
CACAAAAGCCGGCCCTTCAT+TGG 0.296461 3:+40112000 None:intergenic
GTCTTCGGGGCAAAGATTTC+CGG 0.311488 3:-40111975 MsG0380013534.01.T01:CDS
GTGGGCTTGATGGGCTTTGT+TGG 0.322750 3:+40112622 None:intergenic
ACTTCTTAGGGCTCATTGAT+TGG 0.336465 3:-40112075 MsG0380013534.01.T01:CDS
CTTCACCACCCCAAGGAAAA+TGG 0.338457 3:+40111906 None:intergenic
ACAAAAGCCGGCCCTTCATT+GGG 0.339184 3:+40112001 None:intergenic
CACAAGGAACGGTAGTAAAA+TGG 0.340114 3:-40112314 MsG0380013534.01.T01:CDS
GGCCGAAGGAGGAGGGAGTT+TGG 0.342738 3:+40112495 None:intergenic
CTTGATGGGCTTTGTTGGGT+GGG 0.343820 3:+40112627 None:intergenic
TGGGCTTGATGGGCTTTGTT+GGG 0.350791 3:+40112623 None:intergenic
TGTTATTGTTGTGGGCTTGA+TGG 0.355998 3:+40112612 None:intergenic
ATATCTAAGAAAATGGATAA+TGG 0.358864 3:-40115074 None:intergenic
TTTCCTTGGGGTGGTGAAGC+TGG 0.359837 3:-40111902 MsG0380013534.01.T01:CDS
CCCAATCACCATTCCTTAAA+GGG 0.360645 3:+40111858 None:intergenic
CTTCTTAGGGCTCATTGATT+GGG 0.361435 3:-40112074 MsG0380013534.01.T01:CDS
CCAAAATCCACCTTGTCTTC+CGG 0.364145 3:+40111956 None:intergenic
CTCAGGTTCACCCACAGAAT+TGG 0.365871 3:+40114788 None:intergenic
GCCCTTTAAGGAATGGTGAT+TGG 0.369179 3:-40111859 MsG0380013534.01.T01:CDS
AATGTTCTTTCTATCCCATT+TGG 0.374402 3:-40112190 MsG0380013534.01.T01:CDS
GAGTTGGTTGATAAGCCATT+AGG 0.377668 3:-40112151 MsG0380013534.01.T01:CDS
AAGAAAATGGATAATGGAAA+TGG 0.381443 3:-40115068 None:intergenic
CCCTTTAAGGAATGGTGATT+GGG 0.385492 3:-40111858 MsG0380013534.01.T01:CDS
CTTTGTTGGGTGGGCTATCT+CGG 0.388084 3:+40112636 None:intergenic
TCCACTGATTTCCCGCCAAA+TGG 0.389856 3:+40112175 None:intergenic
AGGAGGAGGGAGTTTGGAAA+TGG 0.390066 3:+40112501 None:intergenic
TGTCTTTATGCCTTTGACTT+GGG 0.398097 3:-40111777 MsG0380013534.01.T01:CDS
TTTCCTTCAACAGATTCATC+AGG 0.405811 3:+40114687 None:intergenic
CAATAAATCTTCGCCAATCC+AGG 0.408088 3:+40112031 None:intergenic
CTACGGTGACGTAGTATATT+CGG 0.410471 3:+40112449 None:intergenic
CTCAAGCTTCGAAGGCTTAG+TGG 0.414101 3:+40112378 None:intergenic
TTAGCGGTTGTTATTGTTGT+GGG 0.415530 3:+40112604 None:intergenic
GCTTGATGGGCTTTGTTGGG+TGG 0.416517 3:+40112626 None:intergenic
AGTTGGTTGATAAGCCATTA+GGG 0.417113 3:-40112150 MsG0380013534.01.T01:CDS
CAAACATGTTCCTCGTATCA+TGG 0.418843 3:-40112660 MsG0380013534.01.T01:CDS
GTTATTGTTGTGGGCTTGAT+GGG 0.419413 3:+40112613 None:intergenic
TCACCATTCCTTAAAGGGCT+TGG 0.420562 3:+40111863 None:intergenic
GGAGGAGGGAGTTTGGAAAT+GGG 0.420619 3:+40112502 None:intergenic
GGCAGCCAATGTTCTTGTAT+TGG 0.431527 3:+40114993 None:intergenic
CTTCTGCCTGCAGTGGATGT+TGG 0.431873 3:-40114951 MsG0380013534.01.T01:CDS
TTCCAAACTCCCTCCTCCTT+CGG 0.432214 3:-40112497 MsG0380013534.01.T01:CDS
ATGTCTTTATGCCTTTGACT+TGG 0.436128 3:-40111778 MsG0380013534.01.T01:CDS
TCATCAACCACCCACCCTAA+TGG 0.439188 3:+40112136 None:intergenic
TATTGTGGTGGCCCCAATGA+AGG 0.441633 3:-40112013 MsG0380013534.01.T01:CDS
AACCCTGATGAATCTGTTGA+AGG 0.446103 3:-40114690 MsG0380013534.01.T01:CDS
TTCCTTAAAGGGCTTGGCAT+TGG 0.454305 3:+40111869 None:intergenic
GCATGGCGTGCTCGCAGTCC+AGG 0.455368 3:-40114646 MsG0380013534.01.T01:intron
TTCCGCTTACTTGTGGAAGT+TGG 0.467896 3:-40112350 MsG0380013534.01.T01:CDS
CCCGAAGACACCACAAAAGC+CGG 0.468680 3:+40111989 None:intergenic
CAACGGAGGAGCACTTCTTA+GGG 0.471002 3:-40112087 MsG0380013534.01.T01:CDS
TGTTGAAGTGGACAATATCA+TGG 0.472306 3:+40114905 None:intergenic
GTAGCGGTGGCCGAAGGAGG+AGG 0.486790 3:+40112487 None:intergenic
ACACCGACCTGTCCCTGGAT+TGG 0.493701 3:-40112044 MsG0380013534.01.T01:CDS
GAAGCACACCGACCTGTCCC+TGG 0.499177 3:-40112049 MsG0380013534.01.T01:CDS
CGATTATTACAAAGAATCTC+AGG 0.503376 3:+40114771 None:intergenic
AGGGAAGGGTTGATGAAACT+TGG 0.504037 3:+40112541 None:intergenic
GTGTCATCGTTGCTTCTCTC+CGG 0.504812 3:+40112224 None:intergenic
CAGCGAGTGATTGCAAGCGT+TGG 0.508815 3:+40112419 None:intergenic
GGTTAATAAGGTTGTTGAAG+TGG 0.511067 3:+40114893 None:intergenic
CCACTGATTTCCCGCCAAAT+GGG 0.511697 3:+40112176 None:intergenic
CGGGAAATCAGTGGAGGAGT+TGG 0.512407 3:-40112167 MsG0380013534.01.T01:CDS
TCTCAAGAAGGCATTGGCTA+AGG 0.515499 3:-40114850 MsG0380013534.01.T01:CDS
GTTCTTTCTATCCCATTTGG+CGG 0.518021 3:-40112187 MsG0380013534.01.T01:CDS
GGGATTATCTCAATCAATGA+TGG 0.518179 3:-40111757 None:intergenic
ATTAGGGTGGGTGGTTGATG+AGG 0.520603 3:-40112134 MsG0380013534.01.T01:CDS
TGATTTACTTCTGCCTGCAG+TGG 0.521523 3:-40114958 MsG0380013534.01.T01:CDS
ACGATAGTAGCGATGAGGAC+CGG 0.521532 3:-40112243 MsG0380013534.01.T01:CDS
ATCTTCGCCAATCCAGGGAC+AGG 0.521874 3:+40112037 None:intergenic
TTCTTTCTATCCCATTTGGC+GGG 0.522012 3:-40112186 MsG0380013534.01.T01:CDS
AAAATGGGAATAGTGGTTGA+TGG 0.525000 3:-40112283 MsG0380013534.01.T01:CDS
TGGTGGCCCCAATGAAGGGC+CGG 0.537013 3:-40112008 MsG0380013534.01.T01:CDS
AAACATGTTCCTCGTATCAT+GGG 0.538111 3:-40112659 MsG0380013534.01.T01:CDS
GAATAGTGGTTGATGGAAGA+AGG 0.538346 3:-40112276 MsG0380013534.01.T01:CDS
GTTAGCGGTTGTTATTGTTG+TGG 0.539111 3:+40112603 None:intergenic
GTTGATGGAAGAAGGAGACT+TGG 0.539963 3:-40112268 MsG0380013534.01.T01:CDS
TGATAAGCCATTAGGGTGGG+TGG 0.542648 3:-40112143 MsG0380013534.01.T01:CDS
TTTGTAGCGGTGGCCGAAGG+AGG 0.544011 3:+40112484 None:intergenic
TGAAGTTGTGTCCAATTCTG+TGG 0.548471 3:-40114799 MsG0380013534.01.T01:CDS
GGCTTTGTAGCGGTGGCCGA+AGG 0.553032 3:+40112481 None:intergenic
AGACACAACCATAGATTCAA+AGG 0.553429 3:+40114872 None:intergenic
TAGTATATTCGGCTAAGTAA+CGG 0.554793 3:+40112460 None:intergenic
CCCATTTGGCGGGAAATCAG+TGG 0.557009 3:-40112176 MsG0380013534.01.T01:CDS
CAAGCGTTGGAGCTTCTCTA+CGG 0.561371 3:+40112432 None:intergenic
TTGGATGACGAGGGCTCAGG+AGG 0.565630 3:+40112560 None:intergenic
GGACACAACTTCACCTGCAA+AGG 0.565845 3:+40114809 None:intergenic
ATTGTGGTGGCCCCAATGAA+GGG 0.566085 3:-40112012 MsG0380013534.01.T01:CDS
GTTGAAGTGGACAATATCAT+GGG 0.567565 3:+40114906 None:intergenic
ACGAAAACATGGTTTGTTAG+CGG 0.570643 3:+40112588 None:intergenic
TATGGTTGTGTCTCTCAAGA+AGG 0.571432 3:-40114862 MsG0380013534.01.T01:CDS
AGGAGGGAGCGACGAAAACA+TGG 0.572501 3:+40112577 None:intergenic
CTGCAGGCAGAAGTAAATCA+AGG 0.575022 3:+40114961 None:intergenic
TTTGTTCCAAAGAGGAAGCA+TGG 0.576773 3:-40114663 MsG0380013534.01.T01:CDS
CTTAGGGCTCATTGATTGGG+TGG 0.576867 3:-40112071 MsG0380013534.01.T01:CDS
TTCCTTCAACAGATTCATCA+GGG 0.578977 3:+40114688 None:intergenic
AAGGAAAGTTTGTTCCAAAG+AGG 0.579643 3:-40114671 MsG0380013534.01.T01:CDS
AACACACCAACATCCACTGC+AGG 0.580955 3:+40114945 None:intergenic
TAGCGGTGGCCGAAGGAGGA+GGG 0.580998 3:+40112488 None:intergenic
TGTGTCTCTCAAGAAGGCAT+TGG 0.582810 3:-40114856 MsG0380013534.01.T01:CDS
ATGCCAAGCCCTTTAAGGAA+TGG 0.583943 3:-40111866 MsG0380013534.01.T01:CDS
AACTTGGATGACGAGGGCTC+AGG 0.585088 3:+40112557 None:intergenic
TGGGAATGTACATATCGTCA+AGG 0.591885 3:+40112521 None:intergenic
GCAAAGATTTCCGGAAGACA+AGG 0.593195 3:-40111966 MsG0380013534.01.T01:CDS
TTGAGATAATCCCAAGTCAA+AGG 0.597274 3:+40111767 None:intergenic
GCTAAGTAACGGCTTTGTAG+CGG 0.597665 3:+40112471 None:intergenic
TGTGACAAATGAAGAGGTAG+TGG 0.598358 3:-40115027 MsG0380013534.01.T01:CDS
GCTAATGCAGCCACAAGGAA+CGG 0.601773 3:-40112325 MsG0380013534.01.T01:CDS
AACCAACTTCCACAAGTAAG+CGG 0.602888 3:+40112348 None:intergenic
GAGATTCTTTGTAATAATCG+TGG 0.604075 3:-40114768 MsG0380013534.01.T01:CDS
GGTTGATAAGCCATTAGGGT+GGG 0.604220 3:-40112146 MsG0380013534.01.T01:CDS
TGTACATATCGTCAAGGGAA+GGG 0.609748 3:+40112527 None:intergenic
CAAAAGCCGGCCCTTCATTG+GGG 0.611698 3:+40112002 None:intergenic
GGGAATGTACATATCGTCAA+GGG 0.612337 3:+40112522 None:intergenic
AATAAATCTTCGCCAATCCA+GGG 0.616604 3:+40112032 None:intergenic
CTCGCTGCTTTAGCTAACAA+TGG 0.616670 3:-40112403 MsG0380013534.01.T01:CDS
GCAACTTCATTAAAGTGTGG+TGG 0.618452 3:-40112733 MsG0380013534.01.T01:CDS
AAGTAACGGCTTTGTAGCGG+TGG 0.620157 3:+40112474 None:intergenic
ATTGGAGATCATAGAGTGCG+AGG 0.622406 3:-40111807 MsG0380013534.01.T01:CDS
AGTAAATCAAGGTTAGAGAG+TGG 0.623867 3:+40114972 None:intergenic
TTGGCGAAGATTTATTGTGG+TGG 0.627427 3:-40112025 MsG0380013534.01.T01:CDS
GGATTGGCGAAGATTTATTG+TGG 0.634312 3:-40112028 MsG0380013534.01.T01:CDS
TTGATGAAACTTGGATGACG+AGG 0.635264 3:+40112550 None:intergenic
ATGTACATATCGTCAAGGGA+AGG 0.640262 3:+40112526 None:intergenic
CTATCTCGGCCCATGATACG+AGG 0.641552 3:+40112650 None:intergenic
TGTTACCAATACAAGAACAT+TGG 0.641970 3:-40114998 MsG0380013534.01.T01:CDS
AAGATTTCCGGAAGACAAGG+TGG 0.642050 3:-40111963 MsG0380013534.01.T01:CDS
TCGCCAATCCAGGGACAGGT+CGG 0.647662 3:+40112041 None:intergenic
TGGTTGATAAGCCATTAGGG+TGG 0.648057 3:-40112147 MsG0380013534.01.T01:CDS
ACCACCCCAAGGAAAATGGT+AGG 0.648109 3:+40111910 None:intergenic
GTTTGTGTCAGTAGCAACAA+CGG 0.654514 3:-40112104 MsG0380013534.01.T01:CDS
GAAGTTGTGTCCAATTCTGT+GGG 0.658652 3:-40114798 MsG0380013534.01.T01:CDS
TGTGAGTGTGACAAATGAAG+AGG 0.662729 3:-40115033 MsG0380013534.01.T01:CDS
TAACCAGCTTCACCACCCCA+AGG 0.673339 3:+40111899 None:intergenic
TGGATGACGAGGGCTCAGGA+GGG 0.673717 3:+40112561 None:intergenic
CAGGCAACTTCATTAAAGTG+TGG 0.676025 3:-40112736 MsG0380013534.01.T01:CDS
TGGTTGCTAATGCAGCCACA+AGG 0.676894 3:-40112330 MsG0380013534.01.T01:CDS
TGATGAAACTTGGATGACGA+GGG 0.690763 3:+40112551 None:intergenic
ATTTGGCGGGAAATCAGTGG+AGG 0.694169 3:-40112173 MsG0380013534.01.T01:CDS
TGGAAACGATAGTAGCGATG+AGG 0.708341 3:-40112248 MsG0380013534.01.T01:CDS
TGTGTCAGTAGCAACAACGG+AGG 0.765856 3:-40112101 MsG0380013534.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATAATATCAATAAAT+TGG + Chr3:40112844-40112863 None:intergenic 10.0%
!! TAGTTAAAATGAAAAATAAT+GGG - Chr3:40112989-40113008 MsG0380013534.01.T01:intron 10.0%
!! TTAGTTAAAATGAAAAATAA+TGG - Chr3:40112988-40113007 MsG0380013534.01.T01:intron 10.0%
!!! AAGATATTAGTATATTTTTA+AGG + Chr3:40113166-40113185 None:intergenic 10.0%
!!! CATTTTAACTAAAATTTATT+AGG + Chr3:40112980-40112999 None:intergenic 10.0%
!!! TTGATTGAATATATTTTATT+CGG - Chr3:40112225-40112244 MsG0380013534.01.T01:CDS 10.0%
!! AGAAAGAAAAAAGAAAAAAA+AGG + Chr3:40113636-40113655 None:intergenic 15.0%
!! GAAAGAAAAAAGAAAAAAAA+GGG + Chr3:40113635-40113654 None:intergenic 15.0%
!!! AAAAAGTAAATAAAAGTACT+AGG + Chr3:40112520-40112539 None:intergenic 15.0%
!!! AAAAGTAAATAAAAGTACTA+GGG + Chr3:40112519-40112538 None:intergenic 15.0%
!!! TTTTTTTAAACTGTAATAGA+TGG - Chr3:40112296-40112315 MsG0380013534.01.T01:CDS 15.0%
!! AAAATGGATATTGCAAAAAT+GGG - Chr3:40114524-40114543 MsG0380013534.01.T01:intron 20.0%
!! AAACACTTTAATTGTCAAAT+TGG - Chr3:40113076-40113095 MsG0380013534.01.T01:intron 20.0%
!! AACACTTTAATTGTCAAATT+GGG - Chr3:40113077-40113096 MsG0380013534.01.T01:intron 20.0%
!! CTCATATAAATAAGAATGAT+GGG - Chr3:40113418-40113437 MsG0380013534.01.T01:intron 20.0%
!! TAAAATGGATATTGCAAAAA+TGG - Chr3:40114523-40114542 MsG0380013534.01.T01:intron 20.0%
!!! AAAGTGTATATTTTTTATGC+AGG - Chr3:40114067-40114086 MsG0380013534.01.T01:intron 20.0%
!!! AGTCCTAATAGAATAATTTT+TGG + Chr3:40112747-40112766 None:intergenic 20.0%
!!! TGACAATTAAAGTGTTTTTT+TGG + Chr3:40113073-40113092 None:intergenic 20.0%
!!! TTCTTATTTATATGAGCTTA+AGG + Chr3:40113414-40113433 None:intergenic 20.0%
!!! TTTTTTTGGATTAGATCATT+GGG + Chr3:40113059-40113078 None:intergenic 20.0%
! ATTGAAAGGTAAGTAAAACT+TGG - Chr3:40112721-40112740 MsG0380013534.01.T01:CDS 25.0%
! CATAGATTCAAAGGTTAATA+AGG + Chr3:40111944-40111963 None:intergenic 25.0%
! CTTATTAACCTTTGAATCTA+TGG - Chr3:40111942-40111961 MsG0380013534.01.T01:CDS 25.0%
! GCTCATATAAATAAGAATGA+TGG - Chr3:40113417-40113436 MsG0380013534.01.T01:intron 25.0%
! TATTTATATGAGCTTAAGGT+GGG + Chr3:40113410-40113429 None:intergenic 25.0%
! TGGCCAAAAATTATTCTATT+AGG - Chr3:40112741-40112760 MsG0380013534.01.T01:intron 25.0%
! TTATTTATATGAGCTTAAGG+TGG + Chr3:40113411-40113430 None:intergenic 25.0%
!! AATATCCATTGAAATTTTGG+TGG + Chr3:40112406-40112425 None:intergenic 25.0%
!! ACTGACAATTTGTTTATAAG+TGG + Chr3:40112613-40112632 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+GGG + Chr3:40112612-40112631 None:intergenic 25.0%
!! TGACAATTTGTTTATAAGTG+GGG + Chr3:40112611-40112630 None:intergenic 25.0%
!!! GTTTTTTTGGATTAGATCAT+TGG + Chr3:40113060-40113079 None:intergenic 25.0%
!!! TCACATTGATTTTTGCTTAT+TGG + Chr3:40113730-40113749 None:intergenic 25.0%
!!! TTTTAAGTATGGAAAATTCG+AGG - Chr3:40113947-40113966 MsG0380013534.01.T01:intron 25.0%
AAGATTATTCCACTGTCTAT+TGG - Chr3:40113355-40113374 MsG0380013534.01.T01:intron 30.0%
AATGTTCTTTCTATCCCATT+TGG - Chr3:40114632-40114651 MsG0380013534.01.T01:intron 30.0%
CGATTATTACAAAGAATCTC+AGG + Chr3:40112054-40112073 None:intergenic 30.0%
CTTTAATTGTCAAATTGGGT+TGG - Chr3:40113081-40113100 MsG0380013534.01.T01:intron 30.0%
GACAATGCATAATATATGCA+AGG - Chr3:40112358-40112377 MsG0380013534.01.T01:CDS 30.0%
GACGTCATTGAAATTTGATT+GGG - Chr3:40113789-40113808 MsG0380013534.01.T01:intron 30.0%
GAGATTCTTTGTAATAATCG+TGG - Chr3:40112054-40112073 MsG0380013534.01.T01:CDS 30.0%
TAAAACTAAGGGTGACAATA+TGG - Chr3:40112201-40112220 MsG0380013534.01.T01:CDS 30.0%
TAATCGAGAGTTCAATTGAA+AGG - Chr3:40112707-40112726 MsG0380013534.01.T01:CDS 30.0%
TAGTATATTCGGCTAAGTAA+CGG + Chr3:40114365-40114384 None:intergenic 30.0%
TATTGCAAAAATGGGAATAG+TGG - Chr3:40114532-40114551 MsG0380013534.01.T01:intron 30.0%
TCATTGAAATTTGATTGGGT+TGG - Chr3:40113793-40113812 MsG0380013534.01.T01:intron 30.0%
TGACGTCATTGAAATTTGAT+TGG - Chr3:40113788-40113807 MsG0380013534.01.T01:intron 30.0%
TGTTACCAATACAAGAACAT+TGG - Chr3:40111824-40111843 MsG0380013534.01.T01:CDS 30.0%
TTTCACAACGTTGCAAAAAT+TGG - Chr3:40113223-40113242 MsG0380013534.01.T01:intron 30.0%
! AGAGCTTGGAAAATTTTACA+GGG + Chr3:40112470-40112489 None:intergenic 30.0%
! ATGGTATTGGACATTTGAAA+TGG - Chr3:40113519-40113538 MsG0380013534.01.T01:intron 30.0%
! CGGAATATCCATTGAAATTT+TGG + Chr3:40112409-40112428 None:intergenic 30.0%
! GACAATTTGTTTATAAGTGG+GGG + Chr3:40112610-40112629 None:intergenic 30.0%
! TTGGACATTTGAAATGGATA+TGG - Chr3:40113525-40113544 MsG0380013534.01.T01:intron 30.0%
! TTTTGTGAGATAGGATACAA+AGG - Chr3:40113599-40113618 MsG0380013534.01.T01:intron 30.0%
!! AGACTCACACATTTTAAGTA+TGG - Chr3:40113936-40113955 MsG0380013534.01.T01:intron 30.0%
!! AGTAAATAAAAGTACTAGGG+TGG + Chr3:40112516-40112535 None:intergenic 30.0%
!! TGTGTCGTTTAAATGTAACT+CGG + Chr3:40114018-40114037 None:intergenic 30.0%
!! TTGATTGGGTTGGATAATAA+TGG - Chr3:40113803-40113822 MsG0380013534.01.T01:intron 30.0%
!! TTTTGTTGTCTTAGAAAACG+TGG - Chr3:40112537-40112556 MsG0380013534.01.T01:CDS 30.0%
!!! TCATGTTAGTTTTGTGAGAT+AGG - Chr3:40113590-40113609 MsG0380013534.01.T01:intron 30.0%
AAAATGGGAATAGTGGTTGA+TGG - Chr3:40114539-40114558 MsG0380013534.01.T01:intron 35.0%
AAACATGTTCCTCGTATCAT+GGG - Chr3:40114163-40114182 MsG0380013534.01.T01:intron 35.0%
AAAGGCAAAATGGATGGTAT+TGG - Chr3:40113506-40113525 MsG0380013534.01.T01:intron 35.0%
AAGTGATTTCAGTGGTGAAT+CGG + Chr3:40112429-40112448 None:intergenic 35.0%
AATAAATCTTCGCCAATCCA+GGG + Chr3:40114793-40114812 None:intergenic 35.0%
AGACACAACCATAGATTCAA+AGG + Chr3:40111953-40111972 None:intergenic 35.0%
AGCATCATAACACCTCAAAT+AGG + Chr3:40113858-40113877 None:intergenic 35.0%
AGTAAATCAAGGTTAGAGAG+TGG + Chr3:40111853-40111872 None:intergenic 35.0%
ATGTCTTTATGCCTTTGACT+TGG - Chr3:40115044-40115063 MsG0380013534.01.T01:CDS 35.0%
CAGTCCAGGTATAAAACTAA+GGG - Chr3:40112190-40112209 MsG0380013534.01.T01:CDS 35.0%
CATCATAACACCTCAAATAG+GGG + Chr3:40113856-40113875 None:intergenic 35.0%
GATAGTCACTACTTGAATAG+TGG - Chr3:40113440-40113459 MsG0380013534.01.T01:intron 35.0%
GCATCATAACACCTCAAATA+GGG + Chr3:40113857-40113876 None:intergenic 35.0%
GGTTAATAAGGTTGTTGAAG+TGG + Chr3:40111932-40111951 None:intergenic 35.0%
GTTCGGTATGGTTTAAAAGA+TGG - Chr3:40113103-40113122 MsG0380013534.01.T01:intron 35.0%
GTTGAAGTGGACAATATCAT+GGG + Chr3:40111919-40111938 None:intergenic 35.0%
TCGTTTAAATGTAACTCGGA+TGG + Chr3:40114014-40114033 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - Chr3:40112363-40112382 MsG0380013534.01.T01:CDS 35.0%
TGCATTTGAGTGCTTATCAA+TGG + Chr3:40113564-40113583 None:intergenic 35.0%
TGTTGAAGTGGACAATATCA+TGG + Chr3:40111920-40111939 None:intergenic 35.0%
TTAGTAGCAGCAGTTAACTA+CGG + Chr3:40113192-40113211 None:intergenic 35.0%
TTCCTTCAACAGATTCATCA+GGG + Chr3:40112137-40112156 None:intergenic 35.0%
TTGAGATAATCCCAAGTCAA+AGG + Chr3:40115058-40115077 None:intergenic 35.0%
TTGTCTTAGAAAACGTGGTT+GGG - Chr3:40112542-40112561 MsG0380013534.01.T01:CDS 35.0%
TTTCCTTCAACAGATTCATC+AGG + Chr3:40112138-40112157 None:intergenic 35.0%
! AAGGAAAGTTTGTTCCAAAG+AGG - Chr3:40112151-40112170 MsG0380013534.01.T01:CDS 35.0%
! ATAATGGAGTTGGCCAAAAT+TGG - Chr3:40113819-40113838 MsG0380013534.01.T01:intron 35.0%
! ATGGATATGGACTGTGATAT+AGG - Chr3:40113538-40113557 MsG0380013534.01.T01:intron 35.0%
! CAGAGCTTGGAAAATTTTAC+AGG + Chr3:40112471-40112490 None:intergenic 35.0%
! TGTCTTTATGCCTTTGACTT+GGG - Chr3:40115045-40115064 MsG0380013534.01.T01:CDS 35.0%
! TTAGCGGTTGTTATTGTTGT+GGG + Chr3:40114221-40114240 None:intergenic 35.0%
!! ACGAAAACATGGTTTGTTAG+CGG + Chr3:40114237-40114256 None:intergenic 35.0%
!! AGTTGGTTGATAAGCCATTA+GGG - Chr3:40114672-40114691 MsG0380013534.01.T01:CDS 35.0%
!! ATCCATTGAAATTTTGGTGG+TGG + Chr3:40112403-40112422 None:intergenic 35.0%
!! ATTGTCAAATTGGGTTGGTT+CGG - Chr3:40113086-40113105 MsG0380013534.01.T01:intron 35.0%
!! GCATCTTTTGAAAGAGCAAT+TGG - Chr3:40114997-40115016 MsG0380013534.01.T01:CDS 35.0%
!! TTTTACAGGGTATTCGTTGA+CGG + Chr3:40112457-40112476 None:intergenic 35.0%
!!! CATGTTGGTTTTGTGAGATA+GGG + Chr3:40113272-40113291 None:intergenic 35.0%
!!! GGGGTATTGGTTTTTTTTTG+AGG - Chr3:40113702-40113721 MsG0380013534.01.T01:intron 35.0%
AACCAACTTCCACAAGTAAG+CGG + Chr3:40114477-40114496 None:intergenic 40.0%
AACCCTGATGAATCTGTTGA+AGG - Chr3:40112132-40112151 MsG0380013534.01.T01:CDS 40.0%
ACATGTTAAGAGTCCCACAT+CGG + Chr3:40112647-40112666 None:intergenic 40.0%
ACCCAATCACCATTCCTTAA+AGG + Chr3:40114968-40114987 None:intergenic 40.0%
ACTTCTTAGGGCTCATTGAT+TGG - Chr3:40114747-40114766 MsG0380013534.01.T01:CDS 40.0%
ATCATACAGGCTACAACCAT+GGG - Chr3:40113311-40113330 MsG0380013534.01.T01:intron 40.0%
ATGTACATATCGTCAAGGGA+AGG + Chr3:40114299-40114318 None:intergenic 40.0%
CAAACATGTTCCTCGTATCA+TGG - Chr3:40114162-40114181 MsG0380013534.01.T01:intron 40.0%
CAATAAATCTTCGCCAATCC+AGG + Chr3:40114794-40114813 None:intergenic 40.0%
CACAAGGAACGGTAGTAAAA+TGG - Chr3:40114508-40114527 MsG0380013534.01.T01:intron 40.0%
CAGGCAACTTCATTAAAGTG+TGG - Chr3:40114086-40114105 MsG0380013534.01.T01:intron 40.0%
CATAATATATGCAAGGTCCG+GGG - Chr3:40112365-40112384 MsG0380013534.01.T01:CDS 40.0%
CCCAATCACCATTCCTTAAA+GGG + Chr3:40114967-40114986 None:intergenic 40.0%
CTACGGTGACGTAGTATATT+CGG + Chr3:40114376-40114395 None:intergenic 40.0%
CTTAAGGTGGGTCATCTAAA+TGG + Chr3:40113398-40113417 None:intergenic 40.0%
GAAAAAGACTCAAGCTTCGA+AGG + Chr3:40114455-40114474 None:intergenic 40.0%
GAAGTTGTGTCCAATTCTGT+GGG - Chr3:40112024-40112043 MsG0380013534.01.T01:CDS 40.0%
GATGCAAAAGGCAAAATGGA+TGG - Chr3:40113500-40113519 MsG0380013534.01.T01:intron 40.0%
GCAACTTCATTAAAGTGTGG+TGG - Chr3:40114089-40114108 MsG0380013534.01.T01:intron 40.0%
GCAGTCCAGGTATAAAACTA+AGG - Chr3:40112189-40112208 MsG0380013534.01.T01:CDS 40.0%
GCATAATATATGCAAGGTCC+GGG - Chr3:40112364-40112383 MsG0380013534.01.T01:CDS 40.0%
GGGAATGTACATATCGTCAA+GGG + Chr3:40114303-40114322 None:intergenic 40.0%
GGTAGATGCAAAAGGCAAAA+TGG - Chr3:40113496-40113515 MsG0380013534.01.T01:intron 40.0%
GTCTCATATTATGCCTTTGC+AGG - Chr3:40112000-40112019 MsG0380013534.01.T01:CDS 40.0%
GTTATTGTTGTGGGCTTGAT+GGG + Chr3:40114212-40114231 None:intergenic 40.0%
GTTCTTTCTATCCCATTTGG+CGG - Chr3:40114635-40114654 MsG0380013534.01.T01:intron 40.0%
GTTGTCTTAGAAAACGTGGT+TGG - Chr3:40112541-40112560 MsG0380013534.01.T01:CDS 40.0%
GTTTGTGTCAGTAGCAACAA+CGG - Chr3:40114718-40114737 MsG0380013534.01.T01:CDS 40.0%
TACTGTGTCATCCATCATAC+AGG - Chr3:40113298-40113317 MsG0380013534.01.T01:intron 40.0%
TATGGTTGTGTCTCTCAAGA+AGG - Chr3:40111960-40111979 MsG0380013534.01.T01:CDS 40.0%
TCCACTGTCTATTGGATACA+AGG - Chr3:40113363-40113382 MsG0380013534.01.T01:intron 40.0%
TGAAGTTGTGTCCAATTCTG+TGG - Chr3:40112023-40112042 MsG0380013534.01.T01:CDS 40.0%
TGATGAAACTTGGATGACGA+GGG + Chr3:40114274-40114293 None:intergenic 40.0%
TGGGAATGTACATATCGTCA+AGG + Chr3:40114304-40114323 None:intergenic 40.0%
TGTACATATCGTCAAGGGAA+GGG + Chr3:40114298-40114317 None:intergenic 40.0%
TGTGACAAATGAAGAGGTAG+TGG - Chr3:40111795-40111814 MsG0380013534.01.T01:CDS 40.0%
TGTGAGTGTGACAAATGAAG+AGG - Chr3:40111789-40111808 MsG0380013534.01.T01:CDS 40.0%
TGTTATTGTTGTGGGCTTGA+TGG + Chr3:40114213-40114232 None:intergenic 40.0%
TTCTTTCTATCCCATTTGGC+GGG - Chr3:40114636-40114655 MsG0380013534.01.T01:intron 40.0%
TTGATGAAACTTGGATGACG+AGG + Chr3:40114275-40114294 None:intergenic 40.0%
TTGGCGAAGATTTATTGTGG+TGG - Chr3:40114797-40114816 MsG0380013534.01.T01:CDS 40.0%
TTTGTGAGATAGGGCTACAA+CGG + Chr3:40113263-40113282 None:intergenic 40.0%
TTTGTTCCAAAGAGGAAGCA+TGG - Chr3:40112159-40112178 MsG0380013534.01.T01:CDS 40.0%
! AGTCTCGTTCCTCTAGAAAT+CGG + Chr3:40112683-40112702 None:intergenic 40.0%
! AGTCTTTTTCCGCTTACTTG+TGG - Chr3:40114465-40114484 MsG0380013534.01.T01:intron 40.0%
! CATTTTACTACCGTTCCTTG+TGG + Chr3:40114510-40114529 None:intergenic 40.0%
! CCCTTTAAGGAATGGTGATT+GGG - Chr3:40114964-40114983 MsG0380013534.01.T01:CDS 40.0%
! CTTCTTAGGGCTCATTGATT+GGG - Chr3:40114748-40114767 MsG0380013534.01.T01:CDS 40.0%
! GCAACGATGACACACTATTT+TGG - Chr3:40114608-40114627 MsG0380013534.01.T01:intron 40.0%
! GGATTGGCGAAGATTTATTG+TGG - Chr3:40114794-40114813 MsG0380013534.01.T01:CDS 40.0%
! GGGTTGGATAATAATGGAGT+TGG - Chr3:40113809-40113828 MsG0380013534.01.T01:intron 40.0%
! GTTAGCGGTTGTTATTGTTG+TGG + Chr3:40114222-40114241 None:intergenic 40.0%
! TACTGCATGTTTTGTACCCA+TGG + Chr3:40113330-40113349 None:intergenic 40.0%
! TGCATCCTACCATTTTCCTT+GGG - Chr3:40114907-40114926 MsG0380013534.01.T01:CDS 40.0%
! TGTTAACCTCCGATTTCTAG+AGG - Chr3:40112671-40112690 MsG0380013534.01.T01:CDS 40.0%
! TTGCATCCTACCATTTTCCT+TGG - Chr3:40114906-40114925 MsG0380013534.01.T01:CDS 40.0%
!! AAGACAAGGTGGATTTTGGA+TGG - Chr3:40114870-40114889 MsG0380013534.01.T01:CDS 40.0%
!! AGACAAGGTGGATTTTGGAT+GGG - Chr3:40114871-40114890 MsG0380013534.01.T01:CDS 40.0%
!! GAATAGTGGTTGATGGAAGA+AGG - Chr3:40114546-40114565 MsG0380013534.01.T01:intron 40.0%
!! GAGTTGGTTGATAAGCCATT+AGG - Chr3:40114671-40114690 MsG0380013534.01.T01:CDS 40.0%
!!! ATTGAAATTTTGGTGGTGGC+CGG + Chr3:40112399-40112418 None:intergenic 40.0%
!!! GCATGTTGGTTTTGTGAGAT+AGG + Chr3:40113273-40113292 None:intergenic 40.0%
!!! GTCACCCTTAGTTTTATACC+TGG + Chr3:40112197-40112216 None:intergenic 40.0%
AACACCTCAAATAGGGGTTC+AGG + Chr3:40113850-40113869 None:intergenic 45.0%
AAGATTTCCGGAAGACAAGG+TGG - Chr3:40114859-40114878 MsG0380013534.01.T01:CDS 45.0%
AAGTACTAGGGTGGAAGTTG+TGG + Chr3:40112507-40112526 None:intergenic 45.0%
AGCGACAATTAACTGCTGCT+AGG - Chr3:40113681-40113700 MsG0380013534.01.T01:intron 45.0%
ATTGGAGATCATAGAGTGCG+AGG - Chr3:40115015-40115034 MsG0380013534.01.T01:CDS 45.0%
CATCATACAGGCTACAACCA+TGG - Chr3:40113310-40113329 MsG0380013534.01.T01:intron 45.0%
CATGGTTGTAGCCTGTATGA+TGG + Chr3:40113312-40113331 None:intergenic 45.0%
CCAAAATCCACCTTGTCTTC+CGG + Chr3:40114869-40114888 None:intergenic 45.0%
CGACAATTAACTGCTGCTAG+GGG - Chr3:40113683-40113702 MsG0380013534.01.T01:intron 45.0%
CTAACACAACCCCGCAAAAT+CGG - Chr3:40112566-40112585 MsG0380013534.01.T01:CDS 45.0%
CTGCAGGCAGAAGTAAATCA+AGG + Chr3:40111864-40111883 None:intergenic 45.0%
GACACAGTACACTTGCATGT+TGG + Chr3:40113287-40113306 None:intergenic 45.0%
GCAAAGATTTCCGGAAGACA+AGG - Chr3:40114856-40114875 MsG0380013534.01.T01:CDS 45.0%
GCCTTGTATCCAATAGACAG+TGG + Chr3:40113367-40113386 None:intergenic 45.0%
GCGACAATTAACTGCTGCTA+GGG - Chr3:40113682-40113701 MsG0380013534.01.T01:intron 45.0%
GGCAGCCAATGTTCTTGTAT+TGG + Chr3:40111832-40111851 None:intergenic 45.0%
GGCCACCACCAAAATTTCAA+TGG - Chr3:40112398-40112417 MsG0380013534.01.T01:CDS 45.0%
TCACCATTCCTTAAAGGGCT+TGG + Chr3:40114962-40114981 None:intergenic 45.0%
TGAGCTTAGCTCAGTTGGTT+TGG - Chr3:40112336-40112355 MsG0380013534.01.T01:CDS 45.0%
TGATTTACTTCTGCCTGCAG+TGG - Chr3:40111864-40111883 MsG0380013534.01.T01:CDS 45.0%
TGGAAACGATAGTAGCGATG+AGG - Chr3:40114574-40114593 MsG0380013534.01.T01:intron 45.0%
TTCCGCTTACTTGTGGAAGT+TGG - Chr3:40114472-40114491 MsG0380013534.01.T01:intron 45.0%
TTCCTTAAAGGGCTTGGCAT+TGG + Chr3:40114956-40114975 None:intergenic 45.0%
! ATGCACCTTGTTATCCGACA+AGG - Chr3:40113469-40113488 MsG0380013534.01.T01:intron 45.0%
! ATGCCAAGCCCTTTAAGGAA+TGG - Chr3:40114956-40114975 MsG0380013534.01.T01:CDS 45.0%
! CTCGCTGCTTTAGCTAACAA+TGG - Chr3:40114419-40114438 MsG0380013534.01.T01:intron 45.0%
! GCATCCTACCATTTTCCTTG+GGG - Chr3:40114908-40114927 MsG0380013534.01.T01:CDS 45.0%
! GCCCTTTAAGGAATGGTGAT+TGG - Chr3:40114963-40114982 MsG0380013534.01.T01:CDS 45.0%
! GCTAAGTAACGGCTTTGTAG+CGG + Chr3:40114354-40114373 None:intergenic 45.0%
! GTTGATGGAAGAAGGAGACT+TGG - Chr3:40114554-40114573 MsG0380013534.01.T01:intron 45.0%
! TGCACCTTGTTATCCGACAA+GGG - Chr3:40113470-40113489 MsG0380013534.01.T01:intron 45.0%
! TGTGTCTCTCAAGAAGGCAT+TGG - Chr3:40111966-40111985 MsG0380013534.01.T01:CDS 45.0%
! TTAACTGCTGCTAGGGGTAT+TGG - Chr3:40113689-40113708 MsG0380013534.01.T01:intron 45.0%
! TTAAGAGTCCCACATCGGTT+AGG + Chr3:40112642-40112661 None:intergenic 45.0%
!! AGGGAAGGGTTGATGAAACT+TGG + Chr3:40114284-40114303 None:intergenic 45.0%
!! CAAATTGGGTTGGTTCGGTA+TGG - Chr3:40113091-40113110 MsG0380013534.01.T01:intron 45.0%
!! GACAAGGTGGATTTTGGATG+GGG - Chr3:40114872-40114891 MsG0380013534.01.T01:CDS 45.0%
!! GGTTGATAAGCCATTAGGGT+GGG - Chr3:40114676-40114695 MsG0380013534.01.T01:CDS 45.0%
!! TCTCAAGAAGGCATTGGCTA+AGG - Chr3:40111972-40111991 MsG0380013534.01.T01:CDS 45.0%
!! TGGTTGATAAGCCATTAGGG+TGG - Chr3:40114675-40114694 MsG0380013534.01.T01:CDS 45.0%
!!! GAAGGCATTGGCTAAGGTTT+TGG - Chr3:40111978-40111997 MsG0380013534.01.T01:CDS 45.0%
!!! GGTTCAGGTTGGACCAATTT+TGG + Chr3:40113835-40113854 None:intergenic 45.0%
!!! TTGAAATTTTGGTGGTGGCC+GGG + Chr3:40112398-40112417 None:intergenic 45.0%
AACACACCAACATCCACTGC+AGG + Chr3:40111880-40111899 None:intergenic 50.0%
AAGGGGGTGGTAGATGCAAA+AGG - Chr3:40113488-40113507 MsG0380013534.01.T01:intron 50.0%
ACAAAAGCCGGCCCTTCATT+GGG + Chr3:40114824-40114843 None:intergenic 50.0%
ACCACCCCAAGGAAAATGGT+AGG + Chr3:40114915-40114934 None:intergenic 50.0%
ACGATAGTAGCGATGAGGAC+CGG - Chr3:40114579-40114598 MsG0380013534.01.T01:intron 50.0%
AGGAGGAGGGAGTTTGGAAA+TGG + Chr3:40114324-40114343 None:intergenic 50.0%
AGTCCAACTCCTAACCGATG+TGG - Chr3:40112630-40112649 MsG0380013534.01.T01:CDS 50.0%
ATTGTGGTGGCCCCAATGAA+GGG - Chr3:40114810-40114829 MsG0380013534.01.T01:CDS 50.0%
ATTTGGCGGGAAATCAGTGG+AGG - Chr3:40114649-40114668 MsG0380013534.01.T01:CDS 50.0%
CCAACCTGAACCCCTATTTG+AGG - Chr3:40113843-40113862 MsG0380013534.01.T01:intron 50.0%
CCTCAAATAGGGGTTCAGGT+TGG + Chr3:40113846-40113865 None:intergenic 50.0%
CTCAAGCTTCGAAGGCTTAG+TGG + Chr3:40114447-40114466 None:intergenic 50.0%
CTCAGGTTCACCCACAGAAT+TGG + Chr3:40112037-40112056 None:intergenic 50.0%
CTTCACCACCCCAAGGAAAA+TGG + Chr3:40114919-40114938 None:intergenic 50.0%
GCTAATGCAGCCACAAGGAA+CGG - Chr3:40114497-40114516 MsG0380013534.01.T01:intron 50.0%
GGACACAACTTCACCTGCAA+AGG + Chr3:40112016-40112035 None:intergenic 50.0%
GGAGGAGGGAGTTTGGAAAT+GGG + Chr3:40114323-40114342 None:intergenic 50.0%
GTCCAACTCCTAACCGATGT+GGG - Chr3:40112631-40112650 MsG0380013534.01.T01:CDS 50.0%
GTCTTCGGGGCAAAGATTTC+CGG - Chr3:40114847-40114866 MsG0380013534.01.T01:CDS 50.0%
GTGTCATCGTTGCTTCTCTC+CGG + Chr3:40114601-40114620 None:intergenic 50.0%
TATTGTGGTGGCCCCAATGA+AGG - Chr3:40114809-40114828 MsG0380013534.01.T01:CDS 50.0%
TCATCAACCACCCACCCTAA+TGG + Chr3:40114689-40114708 None:intergenic 50.0%
TGATAAGCCATTAGGGTGGG+TGG - Chr3:40114679-40114698 MsG0380013534.01.T01:CDS 50.0%
TGCCAATGCCAAGCCCTTTA+AGG - Chr3:40114951-40114970 MsG0380013534.01.T01:CDS 50.0%
TGGTTGCTAATGCAGCCACA+AGG - Chr3:40114492-40114511 MsG0380013534.01.T01:intron 50.0%
TGTGTCAGTAGCAACAACGG+AGG - Chr3:40114721-40114740 MsG0380013534.01.T01:CDS 50.0%
TTCCAAACTCCCTCCTCCTT+CGG - Chr3:40114325-40114344 MsG0380013534.01.T01:intron 50.0%
! AAGTAACGGCTTTGTAGCGG+TGG + Chr3:40114351-40114370 None:intergenic 50.0%
! ATTAGGGTGGGTGGTTGATG+AGG - Chr3:40114688-40114707 MsG0380013534.01.T01:CDS 50.0%
! CACCTTGTTATCCGACAAGG+GGG - Chr3:40113472-40113491 MsG0380013534.01.T01:intron 50.0%
! CGATTTTGCGGGGTTGTGTT+AGG + Chr3:40112568-40112587 None:intergenic 50.0%
! CTCGTTCCTCTAGAAATCGG+AGG + Chr3:40112680-40112699 None:intergenic 50.0%
! CTTAGGGCTCATTGATTGGG+TGG - Chr3:40114751-40114770 MsG0380013534.01.T01:CDS 50.0%
! GCACCTTGTTATCCGACAAG+GGG - Chr3:40113471-40113490 MsG0380013534.01.T01:intron 50.0%
! TACAGGGTATTCGTTGACGG+CGG + Chr3:40112454-40112473 None:intergenic 50.0%
! TCCTACCATTTTCCTTGGGG+TGG - Chr3:40114911-40114930 MsG0380013534.01.T01:CDS 50.0%
!! ACAACGGAGGAGCACTTCTT+AGG - Chr3:40114734-40114753 MsG0380013534.01.T01:CDS 50.0%
!! ACCTCACAAGCCGATTTTGC+GGG + Chr3:40112579-40112598 None:intergenic 50.0%
!! CAAAATCGGCTTGTGAGGTG+AGG - Chr3:40112580-40112599 MsG0380013534.01.T01:CDS 50.0%
!! CAACGGAGGAGCACTTCTTA+GGG - Chr3:40114735-40114754 MsG0380013534.01.T01:CDS 50.0%
!! CAAGCGTTGGAGCTTCTCTA+CGG + Chr3:40114393-40114412 None:intergenic 50.0%
!! CACCTCACAAGCCGATTTTG+CGG + Chr3:40112580-40112599 None:intergenic 50.0%
!! CCACTGATTTCCCGCCAAAT+GGG + Chr3:40114649-40114668 None:intergenic 50.0%
!! CCGGAAGACAAGGTGGATTT+TGG - Chr3:40114866-40114885 MsG0380013534.01.T01:CDS 50.0%
!! CTTGATGGGCTTTGTTGGGT+GGG + Chr3:40114198-40114217 None:intergenic 50.0%
!! CTTTGTTGGGTGGGCTATCT+CGG + Chr3:40114189-40114208 None:intergenic 50.0%
!! TCCACTGATTTCCCGCCAAA+TGG + Chr3:40114650-40114669 None:intergenic 50.0%
!! TGGGCTTGATGGGCTTTGTT+GGG + Chr3:40114202-40114221 None:intergenic 50.0%
!!! TGAAATTTTGGTGGTGGCCG+GGG + Chr3:40112397-40112416 None:intergenic 50.0%
AACTTGGATGACGAGGGCTC+AGG + Chr3:40114268-40114287 None:intergenic 55.0%
AGCACGCCATGCTTCCTCTT+TGG + Chr3:40112168-40112187 None:intergenic 55.0%
AGGAGGGAGCGACGAAAACA+TGG + Chr3:40114248-40114267 None:intergenic 55.0%
ATCTTCGCCAATCCAGGGAC+AGG + Chr3:40114788-40114807 None:intergenic 55.0%
CAAAAGCCGGCCCTTCATTG+GGG + Chr3:40114823-40114842 None:intergenic 55.0%
CACAAAAGCCGGCCCTTCAT+TGG + Chr3:40114825-40114844 None:intergenic 55.0%
CACCCCCTTGTCGGATAACA+AGG + Chr3:40113477-40113496 None:intergenic 55.0%
CAGCGAGTGATTGCAAGCGT+TGG + Chr3:40114406-40114425 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + Chr3:40112334-40112353 None:intergenic 55.0%
CCCATTTGGCGGGAAATCAG+TGG - Chr3:40114646-40114665 MsG0380013534.01.T01:intron 55.0%
CCCGAAGACACCACAAAAGC+CGG + Chr3:40114836-40114855 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - Chr3:40112331-40112350 MsG0380013534.01.T01:CDS 55.0%
CGGCGGTCAAGTGATTTCAG+TGG + Chr3:40112437-40112456 None:intergenic 55.0%
CGGGAAATCAGTGGAGGAGT+TGG - Chr3:40114655-40114674 MsG0380013534.01.T01:CDS 55.0%
CTATCTCGGCCCATGATACG+AGG + Chr3:40114175-40114194 None:intergenic 55.0%
CTTCTGCCTGCAGTGGATGT+TGG - Chr3:40111871-40111890 MsG0380013534.01.T01:CDS 55.0%
TAACCAGCTTCACCACCCCA+AGG + Chr3:40114926-40114945 None:intergenic 55.0%
TAGGGTGGAAGTTGTGGTGC+TGG + Chr3:40112501-40112520 None:intergenic 55.0%
TGCATCTACCACCCCCTTGT+CGG + Chr3:40113486-40113505 None:intergenic 55.0%
TTTCCTTGGGGTGGTGAAGC+TGG - Chr3:40114920-40114939 MsG0380013534.01.T01:CDS 55.0%
! CCGGCTTTTGTGGTGTCTTC+GGG - Chr3:40114833-40114852 MsG0380013534.01.T01:CDS 55.0%
! CGGCTTTTGTGGTGTCTTCG+GGG - Chr3:40114834-40114853 MsG0380013534.01.T01:CDS 55.0%
! CTTGTTATCCGACAAGGGGG+TGG - Chr3:40113475-40113494 MsG0380013534.01.T01:intron 55.0%
! GTCCCACATCGGTTAGGAGT+TGG + Chr3:40112636-40112655 None:intergenic 55.0%
!! CAATGAAGGGCCGGCTTTTG+TGG - Chr3:40114823-40114842 MsG0380013534.01.T01:CDS 55.0%
!! CCTCACAAGCCGATTTTGCG+GGG + Chr3:40112578-40112597 None:intergenic 55.0%
!! GAAGTTGTGGTGCTGGCTCA+CGG + Chr3:40112494-40112513 None:intergenic 55.0%
!! GCCGGCTTTTGTGGTGTCTT+CGG - Chr3:40114832-40114851 MsG0380013534.01.T01:CDS 55.0%
!! GCTTGATGGGCTTTGTTGGG+TGG + Chr3:40114199-40114218 None:intergenic 55.0%
!! GTGGGCTTGATGGGCTTTGT+TGG + Chr3:40114203-40114222 None:intergenic 55.0%
ACACCGACCTGTCCCTGGAT+TGG - Chr3:40114778-40114797 MsG0380013534.01.T01:CDS 60.0%
TCGCCAATCCAGGGACAGGT+CGG + Chr3:40114784-40114803 None:intergenic 60.0%
TGGATGACGAGGGCTCAGGA+GGG + Chr3:40114264-40114283 None:intergenic 60.0%
TTGGATGACGAGGGCTCAGG+AGG + Chr3:40114265-40114284 None:intergenic 60.0%
TTTGTAGCGGTGGCCGAAGG+AGG + Chr3:40114341-40114360 None:intergenic 60.0%
!! CCCCGCAAAATCGGCTTGTG+AGG - Chr3:40112575-40112594 MsG0380013534.01.T01:CDS 60.0%
AAGGTCCGGGGTTCGAACCC+CGG - Chr3:40112377-40112396 MsG0380013534.01.T01:CDS 65.0%
GAAGCACACCGACCTGTCCC+TGG - Chr3:40114773-40114792 MsG0380013534.01.T01:CDS 65.0%
GGCCGAAGGAGGAGGGAGTT+TGG + Chr3:40114330-40114349 None:intergenic 65.0%
TAGCGGTGGCCGAAGGAGGA+GGG + Chr3:40114337-40114356 None:intergenic 65.0%
TGGTGGCCCCAATGAAGGGC+CGG - Chr3:40114814-40114833 MsG0380013534.01.T01:CDS 65.0%
! GGCTTTGTAGCGGTGGCCGA+AGG + Chr3:40114344-40114363 None:intergenic 65.0%
!! TGCTGGCTCACGGCAGAGCT+TGG + Chr3:40112484-40112503 None:intergenic 65.0%
GCATGGCGTGCTCGCAGTCC+AGG - Chr3:40112176-40112195 MsG0380013534.01.T01:CDS 70.0%
GTAGCGGTGGCCGAAGGAGG+AGG + Chr3:40114338-40114357 None:intergenic 70.0%
GGTGGCCGGGGTTCGAACCC+CGG + Chr3:40112385-40112404 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 40111760 40115084 40111760 ID=MsG0380013534.01;Name=MsG0380013534.01
Chr3 mRNA 40111760 40115084 40111760 ID=MsG0380013534.01.T01;Parent=MsG0380013534.01;Name=MsG0380013534.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|477
Chr3 exon 40114647 40115084 40114647 ID=MsG0380013534.01.T01:exon:12690;Parent=MsG0380013534.01.T01
Chr3 exon 40111760 40112755 40111760 ID=MsG0380013534.01.T01:exon:12689;Parent=MsG0380013534.01.T01
Chr3 CDS 40114647 40115084 40114647 ID=MsG0380013534.01.T01:cds;Parent=MsG0380013534.01.T01
Chr3 CDS 40111760 40112755 40111760 ID=MsG0380013534.01.T01:cds;Parent=MsG0380013534.01.T01
Gene Sequence

>MsG0380013534.01.T01

ATGGATAATGGAAATGGAGATAATTTCATTGTGAGTGTGACAAATGAAGAGGTAGTGGCAGCAGTGTTACCAATACAAGAACATTGGCTGCCACTCTCTAACCTTGATTTACTTCTGCCTGCAGTGGATGTTGGTGTGTTCTTTTGTTACAAGAATCCCATGATATTGTCCACTTCAACAACCTTATTAACCTTTGAATCTATGGTTGTGTCTCTCAAGAAGGCATTGGCTAAGGTTTTGGTCTCATATTATGCCTTTGCAGGTGAAGTTGTGTCCAATTCTGTGGGTGAACCTGAGATTCTTTGTAATAATCGTGGTGTTGATTTTGTTGAAGCTGTTGCTGATGTTGAGCTTCAATGCATCAATTTTTATAACCCTGATGAATCTGTTGAAGGAAAGTTTGTTCCAAAGAGGAAGCATGGCGTGCTCGCAGTCCAGGCAACTTCATTAAAGTGTGGTGGAATAGTAGTAGCATGCACATTTGATCATCGCATAGCAGATGCATATTCAACAAACATGTTCCTCGTATCATGGGCCGAGATAGCCCACCCAACAAAGCCCATCAAGCCCACAACAATAACAACCGCTAACAAACCATGTTTTCGTCGCTCCCTCCTGAGCCCTCGTCATCCAAGTTTCATCAACCCTTCCCTTGACGATATGTACATTCCCATTTCCAAACTCCCTCCTCCTTCGGCCACCGCTACAAAGCCGTTACTTAGCCGAATATACTACGTCACCGTAGAGAAGCTCCAACGCTTGCAATCACTCGCTGCTTTAGCTAACAATGGCACCACTAAGCCTTCGAAGCTTGAGTCTTTTTCCGCTTACTTGTGGAAGTTGGTTGCTAATGCAGCCACAAGGAACGGTAGTAAAATGGATATTGCAAAAATGGGAATAGTGGTTGATGGAAGAAGGAGACTTGGAAACGATAGTAGCGATGAGGACCGGAGAGAAGCAACGATGACACACTATTTTGGTAATGTTCTTTCTATCCCATTTGGCGGGAAATCAGTGGAGGAGTTGGTTGATAAGCCATTAGGGTGGGTGGTTGATGAGGTTCGCGAGTTTGTGTCAGTAGCAACAACGGAGGAGCACTTCTTAGGGCTCATTGATTGGGTGGAAGCACACCGACCTGTCCCTGGATTGGCGAAGATTTATTGTGGTGGCCCCAATGAAGGGCCGGCTTTTGTGGTGTCTTCGGGGCAAAGATTTCCGGAAGACAAGGTGGATTTTGGATGGGGAAAAGTTATGTTTGCATCCTACCATTTTCCTTGGGGTGGTGAAGCTGGTTATGTGATGCCAATGCCAAGCCCTTTAAGGAATGGTGATTGGGTTGTTTACATGCATCTTTTGAAAGAGCAATTGGAGATCATAGAGTGCGAGGCAGATCATGTCTTTATGCCTTTGACTTGGGATTATCTCAATCAATGA
Protein sequence

>MsG0380013534.01.T01

MDNGNGDNFIVSVTNEEVVAAVLPIQEHWLPLSNLDLLLPAVDVGVFFCYKNPMILSTSTTLLTFESMVVSLKKALAKVLVSYYAFAGEVVSNSVGEPEILCNNRGVDFVEAVADVELQCINFYNPDESVEGKFVPKRKHGVLAVQATSLKCGGIVVACTFDHRIADAYSTNMFLVSWAEIAHPTKPIKPTTITTANKPCFRRSLLSPRHPSFINPSLDDMYIPISKLPPPSATATKPLLSRIYYVTVEKLQRLQSLAALANNGTTKPSKLESFSAYLWKLVANAATRNGSKMDIAKMGIVVDGRRRLGNDSSDEDRREATMTHYFGNVLSIPFGGKSVEELVDKPLGWVVDEVREFVSVATTEEHFLGLIDWVEAHRPVPGLAKIYCGGPNEGPAFVVSSGQRFPEDKVDFGWGKVMFASYHFPWGGEAGYVMPMPSPLRNGDWVVYMHLLKEQLEIIECEADHVFMPLTWDYLNQ*