Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025316.01.T01 | XP_003612550.1 | 95.852 | 458 | 19 | 0 | 1 | 458 | 1 | 458 | 0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025316.01.T01 | A1XWY7 | 35.886 | 457 | 267 | 14 | 16 | 458 | 6 | 450 | 4.21E-76 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025316.01.T01 | G7K5F8 | 95.852 | 458 | 19 | 0 | 1 | 458 | 1 | 458 | 0.0 | 910 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000178.01 | MsG0580025316.01 | 0.810793 | 9.659136e-51 | 5.877998e-48 |
| MsG0180000470.01 | MsG0580025316.01 | 0.810555 | 1.087399e-50 | 6.575126e-48 |
| MsG0180001063.01 | MsG0580025316.01 | 0.814601 | 1.417663e-51 | 9.554522e-49 |
| MsG0180002460.01 | MsG0580025316.01 | 0.802120 | 6.522719e-49 | 3.169292e-46 |
| MsG0180004389.01 | MsG0580025316.01 | 0.806329 | 8.674152e-50 | 4.695021e-47 |
| MsG0180005050.01 | MsG0580025316.01 | 0.817295 | 3.552007e-52 | 2.576532e-49 |
| MsG0280006299.01 | MsG0580025316.01 | 0.805748 | 1.149114e-49 | 6.128482e-47 |
| MsG0280011093.01 | MsG0580025316.01 | 0.821899 | 3.158322e-53 | 2.603254e-50 |
| MsG0380011494.01 | MsG0580025316.01 | 0.831361 | 1.743316e-55 | 1.887515e-52 |
| MsG0380011609.01 | MsG0580025316.01 | 0.814150 | 1.783647e-51 | 1.187504e-48 |
| MsG0380014537.01 | MsG0580025316.01 | 0.801001 | 1.106010e-48 | 5.224448e-46 |
| MsG0380014573.01 | MsG0580025316.01 | 0.805608 | 1.229564e-49 | 6.533492e-47 |
| MsG0480021491.01 | MsG0580025316.01 | 0.808130 | 3.601909e-50 | 2.042888e-47 |
| MsG0480022213.01 | MsG0580025316.01 | -0.805775 | 1.134358e-49 | 6.053767e-47 |
| MsG0580025316.01 | MsG0580027031.01 | 0.842622 | 2.310620e-58 | 3.523400e-55 |
| MsG0580025316.01 | MsG0580027431.01 | 0.814012 | 1.912824e-51 | 1.268776e-48 |
| MsG0580025316.01 | MsG0580029474.01 | 0.820914 | 5.332734e-53 | 4.275835e-50 |
| MsG0580025316.01 | MsG0680035475.01 | 0.805402 | 1.358277e-49 | 7.179421e-47 |
| MsG0580025316.01 | MsG0780036815.01 | 0.825527 | 4.464593e-54 | 4.079649e-51 |
| MsG0580025316.01 | MsG0780038401.01 | 0.811495 | 6.804236e-51 | 4.218395e-48 |
| MsG0580025316.01 | MsG0780039808.01 | 0.812809 | 3.517157e-51 | 2.258026e-48 |
| MsG0580025316.01 | MsG0780040057.01 | 0.800698 | 1.275610e-48 | 5.978672e-46 |
| MsG0580025316.01 | MsG0780041456.01 | 0.821084 | 4.873455e-53 | 3.926200e-50 |
| MsG0580025316.01 | MsG0880045453.01 | 0.833509 | 5.120518e-56 | 5.909542e-53 |
| MsG0580025316.01 | MsG0880045896.01 | 0.817821 | 2.703199e-52 | 1.989421e-49 |
| MsG0580025316.01 | MsG0880045937.01 | 0.803937 | 2.746008e-49 | 1.397855e-46 |
| MsG0580025316.01 | MsG0880046012.01 | 0.802816 | 4.687134e-49 | 2.318372e-46 |
| MsG0380015164.01 | MsG0580025316.01 | 0.802269 | 6.078259e-49 | 2.964646e-46 |
| MsG0380015555.01 | MsG0580025316.01 | 0.819364 | 1.207129e-52 | 9.269408e-50 |
| MsG0380015566.01 | MsG0580025316.01 | 0.831267 | 1.839471e-55 | 1.985918e-52 |
| MsG0380015720.01 | MsG0580025316.01 | 0.818165 | 2.259895e-52 | 1.678896e-49 |
| MsG0380016517.01 | MsG0580025316.01 | 0.813155 | 2.953366e-51 | 1.913731e-48 |
| MsG0380016920.01 | MsG0580025316.01 | 0.815864 | 7.428898e-52 | 5.181875e-49 |
| MsG0380017323.01 | MsG0580025316.01 | 0.806858 | 6.705835e-50 | 3.679306e-47 |
| MsG0280010489.01 | MsG0580025316.01 | 0.824215 | 9.108437e-54 | 8.016579e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580025316.01 | MsG0580029676.01 | PPI |
| MsG0380013534.01 | MsG0580025316.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025316.01.T01 | MTR_5g026320 | 95.852 | 458 | 19 | 0 | 1 | 458 | 1 | 458 | 0.0 | 910 |
| MsG0580025316.01.T01 | MTR_3g450710 | 36.449 | 428 | 245 | 12 | 53 | 456 | 44 | 468 | 3.45e-74 | 241 |
| MsG0580025316.01.T01 | MTR_5g090830 | 35.991 | 439 | 250 | 13 | 15 | 428 | 7 | 439 | 2.06e-73 | 239 |
| MsG0580025316.01.T01 | MTR_5g090810 | 35.927 | 437 | 253 | 14 | 15 | 428 | 7 | 439 | 1.08e-72 | 237 |
| MsG0580025316.01.T01 | MTR_3g450690 | 36.893 | 412 | 236 | 12 | 67 | 457 | 65 | 473 | 5.33e-71 | 233 |
| MsG0580025316.01.T01 | MTR_5g090880 | 37.688 | 398 | 221 | 12 | 56 | 428 | 46 | 441 | 6.49e-71 | 232 |
| MsG0580025316.01.T01 | MTR_7g114470 | 26.018 | 442 | 264 | 18 | 29 | 437 | 20 | 431 | 5.29e-27 | 113 |
| MsG0580025316.01.T01 | MTR_5g076700 | 24.779 | 452 | 280 | 16 | 16 | 437 | 8 | 429 | 1.06e-26 | 112 |
| MsG0580025316.01.T01 | MTR_4g007540 | 25.178 | 421 | 280 | 13 | 42 | 444 | 25 | 428 | 1.61e-26 | 111 |
| MsG0580025316.01.T01 | MTR_8g096530 | 26.185 | 401 | 258 | 13 | 41 | 424 | 28 | 407 | 5.90e-26 | 110 |
| MsG0580025316.01.T01 | MTR_1g053315 | 25.349 | 430 | 278 | 17 | 34 | 437 | 35 | 447 | 1.16e-25 | 109 |
| MsG0580025316.01.T01 | MTR_2g064495 | 23.733 | 434 | 293 | 15 | 22 | 437 | 7 | 420 | 1.71e-25 | 108 |
| MsG0580025316.01.T01 | MTR_2g105330 | 24.495 | 396 | 271 | 14 | 21 | 401 | 5 | 387 | 1.13e-24 | 106 |
| MsG0580025316.01.T01 | MTR_4g022290 | 26.170 | 470 | 275 | 23 | 17 | 447 | 3 | 439 | 8.08e-24 | 103 |
| MsG0580025316.01.T01 | MTR_5g084870 | 25.293 | 427 | 273 | 13 | 17 | 426 | 2 | 399 | 9.07e-24 | 103 |
| MsG0580025316.01.T01 | MTR_3g098980 | 24.627 | 402 | 262 | 14 | 41 | 424 | 35 | 413 | 1.92e-23 | 102 |
| MsG0580025316.01.T01 | MTR_4g127650 | 25.980 | 408 | 263 | 15 | 19 | 397 | 9 | 406 | 2.03e-23 | 102 |
| MsG0580025316.01.T01 | MTR_8g079970 | 24.324 | 444 | 262 | 17 | 17 | 426 | 2 | 405 | 3.56e-23 | 102 |
| MsG0580025316.01.T01 | MTR_4g097090 | 26.400 | 375 | 235 | 15 | 53 | 397 | 42 | 405 | 4.46e-23 | 101 |
| MsG0580025316.01.T01 | MTR_7g084940 | 27.056 | 377 | 236 | 13 | 41 | 399 | 37 | 392 | 5.28e-23 | 101 |
| MsG0580025316.01.T01 | MTR_3g049150 | 25.301 | 415 | 277 | 12 | 52 | 443 | 36 | 440 | 6.02e-23 | 101 |
| MsG0580025316.01.T01 | MTR_3g112180 | 26.000 | 400 | 245 | 13 | 33 | 405 | 25 | 400 | 6.82e-23 | 101 |
| MsG0580025316.01.T01 | MTR_7g027175 | 25.313 | 399 | 262 | 14 | 41 | 423 | 37 | 415 | 1.43e-22 | 100 |
| MsG0580025316.01.T01 | MTR_8g075610 | 24.332 | 374 | 256 | 13 | 42 | 401 | 16 | 376 | 1.96e-21 | 96.7 |
| MsG0580025316.01.T01 | MTR_7g114550 | 26.355 | 406 | 248 | 17 | 32 | 414 | 22 | 399 | 2.05e-21 | 97.1 |
| MsG0580025316.01.T01 | MTR_8g079980 | 26.077 | 441 | 257 | 16 | 17 | 426 | 2 | 404 | 4.14e-21 | 95.9 |
| MsG0580025316.01.T01 | MTR_1g040215 | 27.073 | 410 | 249 | 19 | 16 | 402 | 7 | 389 | 4.76e-21 | 95.9 |
| MsG0580025316.01.T01 | MTR_7g085990 | 27.315 | 432 | 239 | 22 | 32 | 417 | 18 | 420 | 5.78e-21 | 95.5 |
| MsG0580025316.01.T01 | MTR_7g114560 | 24.566 | 403 | 259 | 16 | 32 | 414 | 22 | 399 | 1.05e-20 | 94.7 |
| MsG0580025316.01.T01 | MTR_7g086000 | 24.096 | 415 | 284 | 14 | 55 | 443 | 41 | 450 | 3.15e-20 | 93.2 |
| MsG0580025316.01.T01 | MTR_7g114520 | 25.000 | 396 | 252 | 15 | 32 | 404 | 23 | 396 | 3.49e-20 | 93.2 |
| MsG0580025316.01.T01 | MTR_8g079950 | 23.973 | 438 | 269 | 17 | 17 | 424 | 2 | 405 | 3.64e-20 | 93.2 |
| MsG0580025316.01.T01 | MTR_3g101900 | 26.747 | 415 | 261 | 17 | 58 | 448 | 48 | 443 | 9.58e-20 | 91.7 |
| MsG0580025316.01.T01 | MTR_7g114490 | 25.187 | 401 | 259 | 15 | 32 | 414 | 22 | 399 | 1.20e-19 | 91.7 |
| MsG0580025316.01.T01 | MTR_3g086020 | 24.402 | 418 | 231 | 19 | 15 | 400 | 2 | 366 | 6.43e-19 | 89.0 |
| MsG0580025316.01.T01 | MTR_8g467590 | 26.632 | 383 | 214 | 22 | 51 | 400 | 38 | 386 | 1.97e-18 | 87.8 |
| MsG0580025316.01.T01 | MTR_1g040175 | 26.884 | 398 | 233 | 19 | 33 | 402 | 22 | 389 | 4.92e-18 | 86.7 |
| MsG0580025316.01.T01 | MTR_0190s0020 | 25.000 | 456 | 295 | 18 | 18 | 448 | 4 | 437 | 1.02e-17 | 85.5 |
| MsG0580025316.01.T01 | MTR_8g467580 | 26.247 | 381 | 226 | 15 | 47 | 400 | 34 | 386 | 6.12e-17 | 83.2 |
| MsG0580025316.01.T01 | MTR_3g102010 | 26.389 | 432 | 267 | 18 | 46 | 448 | 37 | 446 | 6.78e-17 | 83.2 |
| MsG0580025316.01.T01 | MTR_4g094842 | 23.656 | 465 | 296 | 17 | 18 | 448 | 4 | 443 | 6.91e-17 | 83.2 |
| MsG0580025316.01.T01 | MTR_7g056087 | 23.706 | 367 | 250 | 13 | 18 | 361 | 4 | 363 | 7.25e-17 | 82.8 |
| MsG0580025316.01.T01 | MTR_3g465990 | 22.642 | 318 | 229 | 8 | 56 | 358 | 47 | 362 | 2.72e-16 | 81.3 |
| MsG0580025316.01.T01 | MTR_5g084850 | 23.131 | 428 | 280 | 13 | 17 | 426 | 2 | 398 | 5.63e-16 | 80.1 |
| MsG0580025316.01.T01 | MTR_3g465980 | 23.140 | 363 | 259 | 11 | 13 | 358 | 3 | 362 | 6.56e-16 | 80.1 |
| MsG0580025316.01.T01 | MTR_1g081660 | 24.682 | 393 | 252 | 17 | 41 | 414 | 39 | 406 | 1.69e-15 | 79.0 |
| MsG0580025316.01.T01 | MTR_6g015320 | 25.592 | 422 | 256 | 17 | 41 | 424 | 29 | 430 | 2.53e-15 | 78.2 |
| MsG0580025316.01.T01 | MTR_1g040315 | 25.899 | 278 | 169 | 10 | 16 | 272 | 7 | 268 | 2.67e-15 | 78.2 |
| MsG0580025316.01.T01 | MTR_3g026950 | 21.226 | 424 | 297 | 13 | 35 | 430 | 17 | 431 | 3.33e-15 | 77.8 |
| MsG0580025316.01.T01 | MTR_7g084910 | 25.397 | 378 | 227 | 14 | 41 | 399 | 38 | 379 | 3.36e-15 | 77.8 |
| MsG0580025316.01.T01 | MTR_4g094835 | 23.245 | 413 | 250 | 17 | 71 | 448 | 61 | 441 | 3.66e-15 | 77.8 |
| MsG0580025316.01.T01 | MTR_3g071320 | 23.934 | 422 | 286 | 14 | 23 | 423 | 8 | 415 | 8.15e-15 | 76.6 |
| MsG0580025316.01.T01 | MTR_7g114960 | 22.118 | 321 | 222 | 11 | 56 | 361 | 45 | 352 | 8.41e-15 | 76.6 |
| MsG0580025316.01.T01 | MTR_3g465910 | 23.677 | 359 | 228 | 10 | 12 | 340 | 2 | 344 | 1.85e-14 | 75.9 |
| MsG0580025316.01.T01 | MTR_1g094790 | 25.527 | 427 | 238 | 21 | 17 | 400 | 2 | 391 | 9.70e-14 | 73.6 |
| MsG0580025316.01.T01 | MTR_6g053810 | 23.607 | 377 | 233 | 12 | 14 | 355 | 12 | 368 | 1.20e-13 | 73.2 |
| MsG0580025316.01.T01 | MTR_6g015315 | 26.265 | 415 | 255 | 19 | 45 | 424 | 30 | 428 | 6.79e-13 | 70.9 |
| MsG0580025316.01.T01 | MTR_2g036780 | 26.829 | 246 | 157 | 10 | 40 | 272 | 34 | 269 | 9.15e-13 | 70.5 |
| MsG0580025316.01.T01 | MTR_3g465880 | 22.727 | 374 | 246 | 11 | 13 | 355 | 3 | 364 | 3.00e-12 | 68.9 |
| MsG0580025316.01.T01 | MTR_4g094832 | 24.324 | 370 | 229 | 16 | 103 | 448 | 83 | 425 | 4.89e-12 | 68.2 |
| MsG0580025316.01.T01 | MTR_2g015430 | 20.354 | 339 | 246 | 9 | 74 | 400 | 58 | 384 | 2.26e-11 | 65.9 |
| MsG0580025316.01.T01 | MTR_7g014250 | 23.543 | 429 | 262 | 19 | 41 | 424 | 26 | 433 | 5.45e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025316.01.T01 | AT1G31490 | 58.296 | 446 | 176 | 8 | 16 | 458 | 4 | 442 | 0.0 | 554 |
| MsG0580025316.01.T01 | AT1G78990 | 39.119 | 386 | 221 | 11 | 53 | 430 | 46 | 425 | 1.90e-76 | 246 |
| MsG0580025316.01.T01 | AT5G16410 | 36.406 | 434 | 257 | 13 | 8 | 430 | 26 | 451 | 2.11e-74 | 241 |
| MsG0580025316.01.T01 | AT1G32910 | 36.735 | 392 | 227 | 12 | 53 | 430 | 46 | 430 | 2.92e-72 | 236 |
| MsG0580025316.01.T01 | AT5G41040 | 28.346 | 381 | 231 | 13 | 41 | 401 | 38 | 396 | 5.94e-28 | 115 |
| MsG0580025316.01.T01 | AT5G41040 | 28.346 | 381 | 231 | 13 | 41 | 401 | 54 | 412 | 8.22e-28 | 115 |
| MsG0580025316.01.T01 | AT1G27620 | 25.907 | 386 | 247 | 13 | 32 | 400 | 21 | 384 | 6.09e-24 | 104 |
| MsG0580025316.01.T01 | AT3G48720 | 25.500 | 400 | 216 | 16 | 41 | 401 | 30 | 386 | 2.45e-23 | 102 |
| MsG0580025316.01.T01 | AT2G19070 | 26.768 | 396 | 230 | 13 | 48 | 397 | 20 | 401 | 3.07e-23 | 102 |
| MsG0580025316.01.T01 | AT3G30280 | 25.882 | 425 | 261 | 20 | 14 | 411 | 2 | 399 | 1.74e-22 | 100 |
| MsG0580025316.01.T01 | AT5G48930 | 25.189 | 397 | 261 | 14 | 24 | 401 | 9 | 388 | 2.08e-22 | 99.8 |
| MsG0580025316.01.T01 | AT1G03390 | 26.531 | 392 | 241 | 19 | 35 | 400 | 37 | 407 | 2.69e-22 | 99.8 |
| MsG0580025316.01.T01 | AT5G63560 | 25.616 | 406 | 258 | 14 | 14 | 401 | 3 | 382 | 3.97e-22 | 98.6 |
| MsG0580025316.01.T01 | AT1G24430 | 25.598 | 418 | 263 | 15 | 27 | 428 | 18 | 403 | 4.27e-22 | 98.6 |
| MsG0580025316.01.T01 | AT3G26040 | 25.336 | 446 | 259 | 15 | 17 | 428 | 2 | 407 | 5.29e-22 | 98.6 |
| MsG0580025316.01.T01 | AT5G57840 | 25.070 | 359 | 244 | 12 | 17 | 360 | 2 | 350 | 7.59e-22 | 98.2 |
| MsG0580025316.01.T01 | AT5G47950 | 24.533 | 428 | 278 | 18 | 14 | 428 | 2 | 397 | 1.80e-21 | 96.7 |
| MsG0580025316.01.T01 | AT5G42830 | 23.628 | 419 | 270 | 15 | 58 | 448 | 48 | 444 | 8.63e-21 | 95.1 |
| MsG0580025316.01.T01 | AT3G03480 | 25.814 | 430 | 266 | 20 | 33 | 436 | 32 | 434 | 4.40e-20 | 92.8 |
| MsG0580025316.01.T01 | AT3G50270 | 23.467 | 473 | 279 | 18 | 18 | 445 | 6 | 440 | 2.01e-19 | 90.9 |
| MsG0580025316.01.T01 | AT5G67150 | 25.117 | 426 | 244 | 21 | 17 | 400 | 4 | 396 | 1.07e-18 | 88.6 |
| MsG0580025316.01.T01 | AT1G24420 | 29.394 | 330 | 191 | 15 | 18 | 327 | 5 | 312 | 1.42e-18 | 88.2 |
| MsG0580025316.01.T01 | AT1G24420 | 29.394 | 330 | 191 | 15 | 18 | 327 | 5 | 312 | 1.42e-18 | 88.2 |
| MsG0580025316.01.T01 | AT4G15390 | 24.634 | 410 | 266 | 16 | 12 | 400 | 2 | 389 | 1.57e-18 | 88.2 |
| MsG0580025316.01.T01 | AT4G15390 | 24.634 | 410 | 266 | 16 | 12 | 400 | 2 | 389 | 1.57e-18 | 88.2 |
| MsG0580025316.01.T01 | AT2G40230 | 24.619 | 394 | 252 | 15 | 35 | 404 | 20 | 392 | 2.94e-18 | 87.0 |
| MsG0580025316.01.T01 | AT1G65450 | 23.280 | 378 | 254 | 15 | 41 | 399 | 40 | 400 | 1.63e-16 | 82.0 |
| MsG0580025316.01.T01 | AT3G50280 | 25.120 | 418 | 252 | 21 | 17 | 400 | 3 | 393 | 2.18e-16 | 81.6 |
| MsG0580025316.01.T01 | AT5G67160 | 24.783 | 460 | 284 | 18 | 17 | 449 | 4 | 428 | 2.65e-15 | 78.2 |
| MsG0580025316.01.T01 | AT4G31910 | 26.510 | 298 | 185 | 12 | 30 | 297 | 23 | 316 | 3.75e-15 | 77.8 |
| MsG0580025316.01.T01 | AT5G07860 | 20.896 | 402 | 274 | 11 | 68 | 448 | 66 | 444 | 8.98e-15 | 76.6 |
| MsG0580025316.01.T01 | AT1G28680 | 23.429 | 350 | 221 | 13 | 74 | 400 | 62 | 387 | 1.19e-13 | 73.2 |
| MsG0580025316.01.T01 | AT5G07850 | 23.270 | 477 | 298 | 18 | 17 | 454 | 7 | 454 | 1.24e-13 | 73.2 |
| MsG0580025316.01.T01 | AT1G28680 | 23.301 | 309 | 199 | 11 | 74 | 360 | 62 | 354 | 3.83e-12 | 68.2 |
Find 79 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAAATACCAACCTTATT+TGG | 0.132764 | 5:+16879161 | MsG0580025316.01.T01:CDS |
| CGGAGACTTGCTTCTGTTAA+TGG | 0.217032 | 5:+16879294 | MsG0580025316.01.T01:CDS |
| GAGAGATTAATCACTGAAAA+TGG | 0.231244 | 5:-16878649 | None:intergenic |
| TCAAATCTTGATCTACTTTC+AGG | 0.243930 | 5:+16878670 | MsG0580025316.01.T01:CDS |
| TCCTGTTAGTGAAGTTGATT+TGG | 0.253495 | 5:+16879707 | MsG0580025316.01.T01:CDS |
| CATTGGTAATGTATTGTCTT+TGG | 0.262038 | 5:+16879470 | MsG0580025316.01.T01:CDS |
| GGATTTGGAAGTCCTTTGTT+AGG | 0.289603 | 5:+16879729 | MsG0580025316.01.T01:CDS |
| AGCTTCAATCTTTGTTCTCT+TGG | 0.297597 | 5:-16879319 | None:intergenic |
| TTCAAAGCATCTACTAATTC+AGG | 0.309519 | 5:-16879852 | None:intergenic |
| CCTGTCTTAGTGGTTTCTTC+AGG | 0.314491 | 5:+16879675 | MsG0580025316.01.T01:CDS |
| AGATTTCCCTTTACAAATTC+AGG | 0.320821 | 5:+16878972 | MsG0580025316.01.T01:CDS |
| TAGAAATACAAGTATGTAAC+TGG | 0.322652 | 5:-16878700 | None:intergenic |
| TTAGGTGATGCTACTTCATT+TGG | 0.333118 | 5:+16879048 | MsG0580025316.01.T01:CDS |
| TGAATTTGTAAAGGGAAATC+TGG | 0.334806 | 5:-16878970 | None:intergenic |
| TTGATTGGATTGAGTTTCAT+AGG | 0.350449 | 5:+16879607 | MsG0580025316.01.T01:CDS |
| GATTTGAAGTTACCTAGTTT+TGG | 0.354372 | 5:-16878730 | None:intergenic |
| ATGCTTGCAAAGGCGGTGTT+AGG | 0.354998 | 5:+16879639 | MsG0580025316.01.T01:CDS |
| CCTGTTAGTGAAGTTGATTT+GGG | 0.355976 | 5:+16879708 | MsG0580025316.01.T01:CDS |
| ATTACTTGGATTTGATTGAT+TGG | 0.362571 | 5:+16879592 | MsG0580025316.01.T01:CDS |
| CTGTTACCTGAATTTGTAAA+GGG | 0.364202 | 5:-16878978 | None:intergenic |
| AGTGAAGTTGATTTGGGATT+TGG | 0.366196 | 5:+16879714 | MsG0580025316.01.T01:CDS |
| AATCATTACTATCCCTTTGC+TGG | 0.371053 | 5:+16878793 | MsG0580025316.01.T01:CDS |
| CCCAAATCAACTTCACTAAC+AGG | 0.388576 | 5:-16879708 | None:intergenic |
| TTAATCACTGAAAATGGCTT+TGG | 0.389224 | 5:-16878643 | None:intergenic |
| AAGCTTTCTCTGCATATGTA+TGG | 0.403699 | 5:+16879337 | MsG0580025316.01.T01:CDS |
| GTGGTAAGGGTGATGGTTCA+TGG | 0.408074 | 5:+16879808 | MsG0580025316.01.T01:CDS |
| TTGTTGTCACAAACGATTTG+AGG | 0.427819 | 5:-16878847 | None:intergenic |
| TTGGTAAATTCATTTCATCT+TGG | 0.434237 | 5:+16879067 | MsG0580025316.01.T01:CDS |
| TGAATTAGTAGATGCTTTGA+AGG | 0.434332 | 5:+16879854 | MsG0580025316.01.T01:CDS |
| AATGTATTGTCTTTGGCTTT+CGG | 0.441300 | 5:+16879477 | MsG0580025316.01.T01:CDS |
| TCTGTTACCTGAATTTGTAA+AGG | 0.444738 | 5:-16878979 | None:intergenic |
| TAGTAATGAGGAACATTACT+TGG | 0.453243 | 5:+16879578 | MsG0580025316.01.T01:CDS |
| AAGATGGGTTGGTTAGTAGA+TGG | 0.454588 | 5:+16879405 | MsG0580025316.01.T01:CDS |
| GAATCAAAGGCAAAGTGGTA+AGG | 0.464027 | 5:+16879794 | MsG0580025316.01.T01:CDS |
| TGGTTCGGTATGAATGATAA+CGG | 0.471212 | 5:-16879111 | None:intergenic |
| AACACCAACCCTTTCAATTG+AGG | 0.478455 | 5:-16879763 | None:intergenic |
| GATTTGGAAGTCCTTTGTTA+GGG | 0.486362 | 5:+16879730 | MsG0580025316.01.T01:CDS |
| CTTTGGCTTTCGGTGAGGCA+AGG | 0.495189 | 5:+16879487 | MsG0580025316.01.T01:CDS |
| TGGATTGAGTTTCATAGGCC+AGG | 0.499721 | 5:+16879612 | MsG0580025316.01.T01:CDS |
| AGATGATGGACCTGTCTTAG+TGG | 0.507067 | 5:+16879665 | MsG0580025316.01.T01:CDS |
| CTGAAGATGAGAAGCAGTCA+TGG | 0.511063 | 5:-16879895 | None:intergenic |
| ACAAGTATGTAACTGGAAAA+CGG | 0.512372 | 5:-16878693 | None:intergenic |
| AATCAAAGGCAAAGTGGTAA+GGG | 0.520980 | 5:+16879795 | MsG0580025316.01.T01:CDS |
| TGAACAATATGGCCAGCAAA+GGG | 0.525017 | 5:-16878805 | None:intergenic |
| AGGTTTGATGCTTGCAAAGG+CGG | 0.529986 | 5:+16879632 | MsG0580025316.01.T01:CDS |
| AGTTCATGATGCAATTTCAA+AGG | 0.532962 | 5:+16879554 | MsG0580025316.01.T01:CDS |
| AATTTCAAAGGTTAGTAATG+AGG | 0.533878 | 5:+16879566 | MsG0580025316.01.T01:CDS |
| TTGAACAATATGGCCAGCAA+AGG | 0.536124 | 5:-16878806 | None:intergenic |
| AATTCAATGTCGAATTACAT+TGG | 0.542017 | 5:+16879453 | MsG0580025316.01.T01:CDS |
| CAGTGTATACCTCAATTGAA+AGG | 0.543563 | 5:+16879754 | MsG0580025316.01.T01:CDS |
| GATGGAAGAGAAAGAATGAG+TGG | 0.544115 | 5:+16879423 | MsG0580025316.01.T01:CDS |
| GTAACAGAATTTACTTGTGG+TGG | 0.546469 | 5:+16878994 | MsG0580025316.01.T01:CDS |
| AAATTTGATCCAAATAAGGT+TGG | 0.546882 | 5:-16879170 | None:intergenic |
| GGCAAGGATTCAAGAATTGA+AGG | 0.552829 | 5:+16879503 | MsG0580025316.01.T01:CDS |
| GCCTTTGCAAGCATCAAACC+TGG | 0.556923 | 5:-16879630 | None:intergenic |
| GTGTTGGTTATATGAATCAA+AGG | 0.560599 | 5:+16879781 | MsG0580025316.01.T01:CDS |
| AGTGTATACCTCAATTGAAA+GGG | 0.563977 | 5:+16879755 | MsG0580025316.01.T01:CDS |
| TCAATTGAAAGGGTTGGTGT+TGG | 0.564088 | 5:+16879765 | MsG0580025316.01.T01:CDS |
| CCTGAAGAAACCACTAAGAC+AGG | 0.567163 | 5:-16879675 | None:intergenic |
| GGACTGTTTCTGCTATCTTG+TGG | 0.568637 | 5:+16879829 | MsG0580025316.01.T01:CDS |
| TAGTGGTTTCTTCAGGACAA+AGG | 0.574621 | 5:+16879682 | MsG0580025316.01.T01:CDS |
| TGAGAGGCGAACGTGCGCAA+AGG | 0.578264 | 5:-16879143 | None:intergenic |
| AGGATTCAAGAATTGAAGGA+AGG | 0.590702 | 5:+16879507 | MsG0580025316.01.T01:CDS |
| GCCAGGTTTGATGCTTGCAA+AGG | 0.594613 | 5:+16879629 | MsG0580025316.01.T01:CDS |
| ACAAACGATTTGAGGTTCGT+CGG | 0.596959 | 5:-16878839 | None:intergenic |
| TATACCTCAATTGAAAGGGT+TGG | 0.598377 | 5:+16879759 | MsG0580025316.01.T01:CDS |
| TGAAGATGAGAAGCAGTCAT+GGG | 0.598746 | 5:-16879894 | None:intergenic |
| AGGCAAAGTGGTAAGGGTGA+TGG | 0.604002 | 5:+16879801 | MsG0580025316.01.T01:CDS |
| AAATAAGGTTGGTATTTGAG+AGG | 0.609809 | 5:-16879159 | None:intergenic |
| GAAGGTTCATTATCAGACAT+AGG | 0.615379 | 5:+16879525 | MsG0580025316.01.T01:CDS |
| GCGGTGTTAGGACAAGATGA+TGG | 0.622280 | 5:+16879651 | MsG0580025316.01.T01:CDS |
| ATTGTCTTTGGCTTTCGGTG+AGG | 0.622701 | 5:+16879482 | MsG0580025316.01.T01:CDS |
| CAGGTAACAGAATTTACTTG+TGG | 0.623975 | 5:+16878991 | MsG0580025316.01.T01:CDS |
| CCGCAGCATGTTAATACTCG+AGG | 0.624790 | 5:-16879274 | None:intergenic |
| TATATGAATCAAAGGCAAAG+TGG | 0.632585 | 5:+16879789 | MsG0580025316.01.T01:CDS |
| CAAATCGTTTGTGACAACAA+TGG | 0.655714 | 5:+16878850 | MsG0580025316.01.T01:CDS |
| GTATACACTGTCCCTAACAA+AGG | 0.661728 | 5:-16879741 | None:intergenic |
| CCTCGAGTATTAACATGCTG+CGG | 0.665073 | 5:+16879274 | MsG0580025316.01.T01:CDS |
| ATGGAAGAAAATGATAAACA+CGG | 0.726903 | 5:+16879356 | MsG0580025316.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATTTGATCCAAATA+AGG | - | Chr5:16879177-16879196 | None:intergenic | 15.0% |
| !!! | TTCAAATTTTTCATATTCTT+GGG | - | Chr5:16878578-16878597 | None:intergenic | 15.0% |
| !! | TAAAAATCTAAATTGCTTAG+TGG | - | Chr5:16878907-16878926 | None:intergenic | 20.0% |
| !!! | CTTCAAATTTTTCATATTCT+TGG | - | Chr5:16878579-16878598 | None:intergenic | 20.0% |
| !!! | TTTTACGATTTTGAACAATA+TGG | - | Chr5:16878819-16878838 | None:intergenic | 20.0% |
| ! | AAATTTGATCCAAATAAGGT+TGG | - | Chr5:16879173-16879192 | None:intergenic | 25.0% |
| ! | AATTCAATGTCGAATTACAT+TGG | + | Chr5:16879453-16879472 | MsG0580025316.01.T01:CDS | 25.0% |
| ! | AATTTCAAAGGTTAGTAATG+AGG | + | Chr5:16879566-16879585 | MsG0580025316.01.T01:CDS | 25.0% |
| ! | ACTTCATAAAAAATGCAAGA+TGG | + | Chr5:16879389-16879408 | MsG0580025316.01.T01:CDS | 25.0% |
| ! | ATGGAAGAAAATGATAAACA+CGG | + | Chr5:16879356-16879375 | MsG0580025316.01.T01:CDS | 25.0% |
| ! | ATTACTTGGATTTGATTGAT+TGG | + | Chr5:16879592-16879611 | MsG0580025316.01.T01:CDS | 25.0% |
| ! | CTTCATAAAAAATGCAAGAT+GGG | + | Chr5:16879390-16879409 | MsG0580025316.01.T01:CDS | 25.0% |
| ! | TAGAAATACAAGTATGTAAC+TGG | - | Chr5:16878703-16878722 | None:intergenic | 25.0% |
| ! | TTCTACAAAAAACCAAAACT+AGG | + | Chr5:16878718-16878737 | MsG0580025316.01.T01:CDS | 25.0% |
| ! | TTGGTAAATTCATTTCATCT+TGG | + | Chr5:16879067-16879086 | MsG0580025316.01.T01:CDS | 25.0% |
| !! | AATTTTTATCAAATGCACCA+TGG | + | Chr5:16879188-16879207 | MsG0580025316.01.T01:CDS | 25.0% |
| !!! | TTTACTTTTGATCATGCATT+AGG | + | Chr5:16879030-16879049 | MsG0580025316.01.T01:CDS | 25.0% |
| ACAAGTATGTAACTGGAAAA+CGG | - | Chr5:16878696-16878715 | None:intergenic | 30.0% | |
| AGATTTCCCTTTACAAATTC+AGG | + | Chr5:16878972-16878991 | MsG0580025316.01.T01:CDS | 30.0% | |
| AGTGTATACCTCAATTGAAA+GGG | + | Chr5:16879755-16879774 | MsG0580025316.01.T01:CDS | 30.0% | |
| AGTTCATGATGCAATTTCAA+AGG | + | Chr5:16879554-16879573 | MsG0580025316.01.T01:CDS | 30.0% | |
| ATAAAAAATGCAAGATGGGT+TGG | + | Chr5:16879394-16879413 | MsG0580025316.01.T01:CDS | 30.0% | |
| CTGTTACCTGAATTTGTAAA+GGG | - | Chr5:16878981-16879000 | None:intergenic | 30.0% | |
| GAGAGATTAATCACTGAAAA+TGG | - | Chr5:16878652-16878671 | None:intergenic | 30.0% | |
| TAGTAATGAGGAACATTACT+TGG | + | Chr5:16879578-16879597 | MsG0580025316.01.T01:CDS | 30.0% | |
| TATATGAATCAAAGGCAAAG+TGG | + | Chr5:16879789-16879808 | MsG0580025316.01.T01:CDS | 30.0% | |
| TCAAATCTTGATCTACTTTC+AGG | + | Chr5:16878670-16878689 | MsG0580025316.01.T01:CDS | 30.0% | |
| TCTCAAATACCAACCTTATT+TGG | + | Chr5:16879161-16879180 | MsG0580025316.01.T01:CDS | 30.0% | |
| TCTGTTACCTGAATTTGTAA+AGG | - | Chr5:16878982-16879001 | None:intergenic | 30.0% | |
| TGAATTAGTAGATGCTTTGA+AGG | + | Chr5:16879854-16879873 | MsG0580025316.01.T01:CDS | 30.0% | |
| TGAATTTGTAAAGGGAAATC+TGG | - | Chr5:16878973-16878992 | None:intergenic | 30.0% | |
| TTAATCACTGAAAATGGCTT+TGG | - | Chr5:16878646-16878665 | None:intergenic | 30.0% | |
| TTGATTGGATTGAGTTTCAT+AGG | + | Chr5:16879607-16879626 | MsG0580025316.01.T01:CDS | 30.0% | |
| ! | CAAAGGTTTCTTTTATGGTT+CGG | - | Chr5:16879129-16879148 | None:intergenic | 30.0% |
| ! | CATATTTTGTATCTCTTCCA+TGG | - | Chr5:16879208-16879227 | None:intergenic | 30.0% |
| ! | TTCAAAGCATCTACTAATTC+AGG | - | Chr5:16879855-16879874 | None:intergenic | 30.0% |
| !! | AAATAAGGTTGGTATTTGAG+AGG | - | Chr5:16879162-16879181 | None:intergenic | 30.0% |
| !! | AATGTATTGTCTTTGGCTTT+CGG | + | Chr5:16879477-16879496 | MsG0580025316.01.T01:CDS | 30.0% |
| !! | CATTGGTAATGTATTGTCTT+TGG | + | Chr5:16879470-16879489 | MsG0580025316.01.T01:CDS | 30.0% |
| !! | GATTTGAAGTTACCTAGTTT+TGG | - | Chr5:16878733-16878752 | None:intergenic | 30.0% |
| !! | GTGTTGGTTATATGAATCAA+AGG | + | Chr5:16879781-16879800 | MsG0580025316.01.T01:CDS | 30.0% |
| AAGCTTTCTCTGCATATGTA+TGG | + | Chr5:16879337-16879356 | MsG0580025316.01.T01:CDS | 35.0% | |
| AATCAAAGGCAAAGTGGTAA+GGG | + | Chr5:16879795-16879814 | MsG0580025316.01.T01:CDS | 35.0% | |
| AATCATTACTATCCCTTTGC+TGG | + | Chr5:16878793-16878812 | MsG0580025316.01.T01:CDS | 35.0% | |
| AGCTTCAATCTTTGTTCTCT+TGG | - | Chr5:16879322-16879341 | None:intergenic | 35.0% | |
| AGGATTCAAGAATTGAAGGA+AGG | + | Chr5:16879507-16879526 | MsG0580025316.01.T01:CDS | 35.0% | |
| CAAATCGTTTGTGACAACAA+TGG | + | Chr5:16878850-16878869 | MsG0580025316.01.T01:CDS | 35.0% | |
| CAGGTAACAGAATTTACTTG+TGG | + | Chr5:16878991-16879010 | MsG0580025316.01.T01:CDS | 35.0% | |
| CAGTGTATACCTCAATTGAA+AGG | + | Chr5:16879754-16879773 | MsG0580025316.01.T01:CDS | 35.0% | |
| GAAGGTTCATTATCAGACAT+AGG | + | Chr5:16879525-16879544 | MsG0580025316.01.T01:CDS | 35.0% | |
| GATTTGGAAGTCCTTTGTTA+GGG | + | Chr5:16879730-16879749 | MsG0580025316.01.T01:CDS | 35.0% | |
| GTAACAGAATTTACTTGTGG+TGG | + | Chr5:16878994-16879013 | MsG0580025316.01.T01:CDS | 35.0% | |
| TATACCTCAATTGAAAGGGT+TGG | + | Chr5:16879759-16879778 | MsG0580025316.01.T01:CDS | 35.0% | |
| TTGTTGTCACAAACGATTTG+AGG | - | Chr5:16878850-16878869 | None:intergenic | 35.0% | |
| ! | CCTGTTAGTGAAGTTGATTT+GGG | + | Chr5:16879708-16879727 | MsG0580025316.01.T01:CDS | 35.0% |
| ! | TCCTGTTAGTGAAGTTGATT+TGG | + | Chr5:16879707-16879726 | MsG0580025316.01.T01:CDS | 35.0% |
| ! | TTAGGTGATGCTACTTCATT+TGG | + | Chr5:16879048-16879067 | MsG0580025316.01.T01:CDS | 35.0% |
| !! | AGTGAAGTTGATTTGGGATT+TGG | + | Chr5:16879714-16879733 | MsG0580025316.01.T01:CDS | 35.0% |
| !! | TGGTTCGGTATGAATGATAA+CGG | - | Chr5:16879114-16879133 | None:intergenic | 35.0% |
| AACACCAACCCTTTCAATTG+AGG | - | Chr5:16879766-16879785 | None:intergenic | 40.0% | |
| CCCAAATCAACTTCACTAAC+AGG | - | Chr5:16879711-16879730 | None:intergenic | 40.0% | |
| GAATCAAAGGCAAAGTGGTA+AGG | + | Chr5:16879794-16879813 | MsG0580025316.01.T01:CDS | 40.0% | |
| GATGGAAGAGAAAGAATGAG+TGG | + | Chr5:16879423-16879442 | MsG0580025316.01.T01:CDS | 40.0% | |
| GCAGTCATGGGATGAAAAAT+TGG | - | Chr5:16879885-16879904 | None:intergenic | 40.0% | |
| GGATTTGGAAGTCCTTTGTT+AGG | + | Chr5:16879729-16879748 | MsG0580025316.01.T01:CDS | 40.0% | |
| GGCAAGGATTCAAGAATTGA+AGG | + | Chr5:16879503-16879522 | MsG0580025316.01.T01:CDS | 40.0% | |
| GTATACACTGTCCCTAACAA+AGG | - | Chr5:16879744-16879763 | None:intergenic | 40.0% | |
| TAGTGGTTTCTTCAGGACAA+AGG | + | Chr5:16879682-16879701 | MsG0580025316.01.T01:CDS | 40.0% | |
| TGAACAATATGGCCAGCAAA+GGG | - | Chr5:16878808-16878827 | None:intergenic | 40.0% | |
| TGAAGATGAGAAGCAGTCAT+GGG | - | Chr5:16879897-16879916 | None:intergenic | 40.0% | |
| TTGAACAATATGGCCAGCAA+AGG | - | Chr5:16878809-16878828 | None:intergenic | 40.0% | |
| ! | ACAAACGATTTGAGGTTCGT+CGG | - | Chr5:16878842-16878861 | None:intergenic | 40.0% |
| ! | GTGCGCAAAGGTTTCTTTTA+TGG | - | Chr5:16879134-16879153 | None:intergenic | 40.0% |
| !! | AAGATGGGTTGGTTAGTAGA+TGG | + | Chr5:16879405-16879424 | MsG0580025316.01.T01:CDS | 40.0% |
| !! | TCAATTGAAAGGGTTGGTGT+TGG | + | Chr5:16879765-16879784 | MsG0580025316.01.T01:CDS | 40.0% |
| AGGTTTGATGCTTGCAAAGG+CGG | + | Chr5:16879632-16879651 | MsG0580025316.01.T01:CDS | 45.0% | |
| CCTCGAGTATTAACATGCTG+CGG | + | Chr5:16879274-16879293 | MsG0580025316.01.T01:CDS | 45.0% | |
| CCTGAAGAAACCACTAAGAC+AGG | - | Chr5:16879678-16879697 | None:intergenic | 45.0% | |
| CCTGTCTTAGTGGTTTCTTC+AGG | + | Chr5:16879675-16879694 | MsG0580025316.01.T01:CDS | 45.0% | |
| CTGAAGATGAGAAGCAGTCA+TGG | - | Chr5:16879898-16879917 | None:intergenic | 45.0% | |
| TGGATTGAGTTTCATAGGCC+AGG | + | Chr5:16879612-16879631 | MsG0580025316.01.T01:CDS | 45.0% | |
| ! | CGGAGACTTGCTTCTGTTAA+TGG | + | Chr5:16879294-16879313 | MsG0580025316.01.T01:CDS | 45.0% |
| !! | AGATGATGGACCTGTCTTAG+TGG | + | Chr5:16879665-16879684 | MsG0580025316.01.T01:CDS | 45.0% |
| !! | ATTGTCTTTGGCTTTCGGTG+AGG | + | Chr5:16879482-16879501 | MsG0580025316.01.T01:CDS | 45.0% |
| !! | GGACTGTTTCTGCTATCTTG+TGG | + | Chr5:16879829-16879848 | MsG0580025316.01.T01:CDS | 45.0% |
| AGGCAAAGTGGTAAGGGTGA+TGG | + | Chr5:16879801-16879820 | MsG0580025316.01.T01:CDS | 50.0% | |
| ATGCTTGCAAAGGCGGTGTT+AGG | + | Chr5:16879639-16879658 | MsG0580025316.01.T01:CDS | 50.0% | |
| CCGCAGCATGTTAATACTCG+AGG | - | Chr5:16879277-16879296 | None:intergenic | 50.0% | |
| GCCAGGTTTGATGCTTGCAA+AGG | + | Chr5:16879629-16879648 | MsG0580025316.01.T01:CDS | 50.0% | |
| GCCTTTGCAAGCATCAAACC+TGG | - | Chr5:16879633-16879652 | None:intergenic | 50.0% | |
| ! | GCGGTGTTAGGACAAGATGA+TGG | + | Chr5:16879651-16879670 | MsG0580025316.01.T01:CDS | 50.0% |
| ! | GTGGTAAGGGTGATGGTTCA+TGG | + | Chr5:16879808-16879827 | MsG0580025316.01.T01:CDS | 50.0% |
| !! | CTTTGGCTTTCGGTGAGGCA+AGG | + | Chr5:16879487-16879506 | MsG0580025316.01.T01:CDS | 55.0% |
| TGAGAGGCGAACGTGCGCAA+AGG | - | Chr5:16879146-16879165 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 16878547 | 16879923 | 16878547 | ID=MsG0580025316.01;Name=MsG0580025316.01 |
| Chr5 | mRNA | 16878547 | 16879923 | 16878547 | ID=MsG0580025316.01.T01;Parent=MsG0580025316.01;Name=MsG0580025316.01.T01;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|458 |
| Chr5 | exon | 16878547 | 16879923 | 16878547 | ID=MsG0580025316.01.T01:exon:22786;Parent=MsG0580025316.01.T01 |
| Chr5 | CDS | 16878547 | 16879923 | 16878547 | ID=MsG0580025316.01.T01:cds;Parent=MsG0580025316.01.T01 |
| Gene Sequence |
| Protein sequence |
