Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029676.01.T01 | RHN57644.1 | 83.936 | 498 | 23 | 3 | 2 | 449 | 4 | 494 | 0 | 847 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029676.01.T01 | A1XWY7 | 51.627 | 461 | 166 | 8 | 31 | 447 | 1 | 448 | 1.10E-148 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029676.01.T01 | A0A396I0E7 | 83.936 | 498 | 23 | 3 | 2 | 449 | 4 | 494 | 0.0 | 847 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0580029676.01 | 0.815959 | 7.074220e-52 | 4.947497e-49 |
| MsG0080049046.01 | MsG0580029676.01 | 0.800674 | 1.289911e-48 | 6.042332e-46 |
| MsG0180001008.01 | MsG0580029676.01 | 0.802936 | 4.427895e-49 | 2.196635e-46 |
| MsG0180001027.01 | MsG0580029676.01 | 0.810996 | 8.731437e-51 | 5.342741e-48 |
| MsG0180001029.01 | MsG0580029676.01 | 0.810405 | 1.171896e-50 | 7.057519e-48 |
| MsG0180001513.01 | MsG0580029676.01 | 0.800499 | 1.400870e-48 | 6.532792e-46 |
| MsG0180003320.01 | MsG0580029676.01 | 0.828282 | 9.806585e-55 | 9.702775e-52 |
| MsG0180003484.01 | MsG0580029676.01 | 0.806134 | 9.532577e-50 | 5.134113e-47 |
| MsG0180004549.01 | MsG0580029676.01 | 0.804550 | 2.047560e-49 | 1.058734e-46 |
| MsG0180005648.01 | MsG0580029676.01 | 0.800589 | 1.342890e-48 | 6.276821e-46 |
| MsG0180005906.01 | MsG0580029676.01 | 0.801843 | 7.436408e-49 | 3.588018e-46 |
| MsG0280010936.01 | MsG0580029676.01 | 0.806427 | 8.269248e-50 | 4.487099e-47 |
| MsG0280011292.01 | MsG0580029676.01 | 0.805493 | 1.300212e-49 | 6.888431e-47 |
| MsG0380011968.01 | MsG0580029676.01 | 0.824413 | 8.182620e-54 | 7.241984e-51 |
| MsG0380013843.01 | MsG0580029676.01 | 0.809086 | 2.251659e-50 | 1.309661e-47 |
| MsG0380014639.01 | MsG0580029676.01 | -0.802849 | 4.615462e-49 | 2.284772e-46 |
| MsG0480019146.01 | MsG0580029676.01 | 0.835463 | 1.653968e-56 | 2.024029e-53 |
| MsG0480019348.01 | MsG0580029676.01 | 0.807828 | 4.177458e-50 | 2.350461e-47 |
| MsG0480019842.01 | MsG0580029676.01 | 0.807790 | 4.254474e-50 | 2.391527e-47 |
| MsG0480020118.01 | MsG0580029676.01 | 0.807121 | 5.899673e-50 | 3.258926e-47 |
| MsG0480020904.01 | MsG0580029676.01 | 0.831963 | 1.238806e-55 | 1.365482e-52 |
| MsG0480021360.01 | MsG0580029676.01 | 0.819853 | 9.337450e-53 | 7.269147e-50 |
| MsG0480021361.01 | MsG0580029676.01 | 0.807593 | 4.686255e-50 | 2.620555e-47 |
| MsG0480022055.01 | MsG0580029676.01 | 0.835315 | 1.802273e-56 | 2.196056e-53 |
| MsG0480022310.01 | MsG0580029676.01 | 0.809536 | 1.802863e-50 | 1.061284e-47 |
| MsG0580024087.01 | MsG0580029676.01 | 0.832145 | 1.117308e-55 | 1.237955e-52 |
| MsG0580024218.01 | MsG0580029676.01 | 0.808919 | 2.444756e-50 | 1.415528e-47 |
| MsG0580024220.01 | MsG0580029676.01 | 0.805565 | 1.255180e-49 | 6.662188e-47 |
| MsG0580024839.01 | MsG0580029676.01 | 0.804624 | 1.975142e-49 | 1.023266e-46 |
| MsG0580025431.01 | MsG0580029676.01 | 0.826784 | 2.242840e-54 | 2.124209e-51 |
| MsG0580025432.01 | MsG0580029676.01 | 0.816617 | 5.041723e-52 | 3.590026e-49 |
| MsG0580025590.01 | MsG0580029676.01 | 0.817899 | 2.596028e-52 | 1.914554e-49 |
| MsG0580025960.01 | MsG0580029676.01 | 0.808044 | 3.756833e-50 | 2.125864e-47 |
| MsG0580026017.01 | MsG0580029676.01 | 0.805174 | 1.515923e-49 | 7.966004e-47 |
| MsG0580026019.01 | MsG0580029676.01 | 0.822963 | 1.787521e-53 | 1.518662e-50 |
| MsG0580026020.01 | MsG0580029676.01 | 0.802355 | 5.834564e-49 | 2.852190e-46 |
| MsG0380015660.01 | MsG0580029676.01 | 0.813144 | 2.969647e-51 | 1.923734e-48 |
| MsG0380016299.01 | MsG0580029676.01 | 0.843090 | 1.735396e-58 | 2.685176e-55 |
| MsG0380016300.01 | MsG0580029676.01 | 0.818960 | 1.492200e-52 | 1.133309e-49 |
| MsG0380016485.01 | MsG0580029676.01 | 0.818833 | 1.594308e-52 | 1.206528e-49 |
| MsG0380017168.01 | MsG0580029676.01 | 0.813224 | 2.852790e-51 | 1.852025e-48 |
| MsG0380017901.01 | MsG0580029676.01 | 0.817748 | 2.807262e-52 | 2.061956e-49 |
| MsG0580027751.01 | MsG0580029676.01 | 0.812159 | 4.878433e-51 | 3.078592e-48 |
| MsG0580027752.01 | MsG0580029676.01 | 0.801966 | 7.015544e-49 | 3.395352e-46 |
| MsG0580028985.01 | MsG0580029676.01 | 0.804159 | 2.469579e-49 | 1.264234e-46 |
| MsG0580029359.01 | MsG0580029676.01 | 0.810619 | 1.053497e-50 | 6.381092e-48 |
| MsG0580029674.01 | MsG0580029676.01 | 0.848233 | 6.982175e-60 | 1.272823e-56 |
| MsG0580029676.01 | MsG0680030296.01 | 0.810040 | 1.404817e-50 | 8.380420e-48 |
| MsG0580029676.01 | MsG0680030613.01 | 0.805390 | 1.365891e-49 | 7.217369e-47 |
| MsG0580029676.01 | MsG0680031200.01 | 0.801772 | 7.689505e-49 | 3.703307e-46 |
| MsG0580029676.01 | MsG0680031474.01 | 0.826448 | 2.698464e-54 | 2.531399e-51 |
| MsG0580029676.01 | MsG0680032932.01 | 0.800340 | 1.509327e-48 | 7.010484e-46 |
| MsG0580029676.01 | MsG0680033617.01 | 0.820666 | 6.080162e-53 | 4.841059e-50 |
| MsG0580029676.01 | MsG0680034238.01 | 0.809378 | 1.948914e-50 | 1.142481e-47 |
| MsG0580029676.01 | MsG0680034354.01 | 0.800459 | 1.427139e-48 | 6.648486e-46 |
| MsG0580029676.01 | MsG0680034418.01 | 0.836890 | 7.175525e-57 | 9.167019e-54 |
| MsG0580029676.01 | MsG0680034728.01 | 0.825899 | 3.645193e-54 | 3.366644e-51 |
| MsG0580029676.01 | MsG0780036378.01 | 0.801612 | 8.292198e-49 | 3.977400e-46 |
| MsG0580029676.01 | MsG0780036649.01 | 0.812590 | 3.928229e-51 | 2.507651e-48 |
| MsG0580029676.01 | MsG0780036839.01 | 0.852351 | 4.887602e-61 | 1.018444e-57 |
| MsG0580029676.01 | MsG0780038519.01 | 0.800996 | 1.109095e-48 | 5.238249e-46 |
| MsG0580029676.01 | MsG0780038818.01 | 0.804282 | 2.327669e-49 | 1.195346e-46 |
| MsG0580029676.01 | MsG0780039373.01 | 0.807386 | 5.184145e-50 | 2.883607e-47 |
| MsG0580029676.01 | MsG0780039619.01 | 0.812292 | 4.563007e-51 | 2.889944e-48 |
| MsG0580029676.01 | MsG0780039883.01 | 0.802948 | 4.402136e-49 | 2.184531e-46 |
| MsG0580029676.01 | MsG0780039979.01 | 0.838238 | 3.238494e-57 | 4.310685e-54 |
| MsG0580029676.01 | MsG0780040497.01 | 0.858200 | 9.696617e-63 | 2.455137e-59 |
| MsG0580029676.01 | MsG0780040498.01 | 0.845999 | 2.860955e-59 | 4.855192e-56 |
| MsG0580029676.01 | MsG0780040831.01 | 0.824451 | 8.012826e-54 | 7.099694e-51 |
| MsG0580029676.01 | MsG0780041180.01 | 0.811921 | 5.496949e-51 | 3.446289e-48 |
| MsG0580029676.01 | MsG0880042369.01 | 0.809023 | 2.322223e-50 | 1.348361e-47 |
| MsG0580029676.01 | MsG0880043212.01 | 0.827576 | 1.449686e-54 | 1.405047e-51 |
| MsG0580029676.01 | MsG0880043217.01 | 0.815266 | 1.009376e-51 | 6.926387e-49 |
| MsG0580029676.01 | MsG0880043882.01 | 0.804238 | 2.377950e-49 | 1.219731e-46 |
| MsG0580029676.01 | MsG0880046095.01 | 0.819337 | 1.224860e-52 | 9.397974e-50 |
| MsG0580029676.01 | MsG0880047383.01 | 0.820117 | 8.124339e-53 | 6.372509e-50 |
| MsG0580029676.01 | MsG0880047714.01 | 0.802269 | 6.078808e-49 | 2.964901e-46 |
| MsG0280006546.01 | MsG0580029676.01 | 0.813026 | 3.152873e-51 | 2.035983e-48 |
| MsG0280006560.01 | MsG0580029676.01 | 0.802248 | 6.140249e-49 | 2.993298e-46 |
| MsG0280006579.01 | MsG0580029676.01 | 0.800783 | 1.225696e-48 | 5.757156e-46 |
| MsG0280007054.01 | MsG0580029676.01 | 0.805143 | 1.539106e-49 | 8.081298e-47 |
| MsG0280007199.01 | MsG0580029676.01 | 0.801022 | 1.095175e-48 | 5.175939e-46 |
| MsG0280007922.01 | MsG0580029676.01 | 0.801463 | 8.896816e-49 | 4.251474e-46 |
| MsG0280007937.01 | MsG0580029676.01 | 0.827255 | 1.730615e-54 | 1.661936e-51 |
| MsG0280009232.01 | MsG0580029676.01 | 0.828994 | 6.597886e-55 | 6.664533e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580025316.01 | MsG0580029676.01 | PPI |
| MsG0380017154.01 | MsG0580029676.01 | PPI |
| MsG0380017151.01 | MsG0580029676.01 | PPI |
| MsG0380013534.01 | MsG0580029676.01 | PPI |
| MsG0380017152.01 | MsG0580029676.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029676.01.T01 | MTR_5g090830 | 86.624 | 471 | 13 | 2 | 29 | 449 | 1 | 471 | 0.0 | 830 |
| MsG0580029676.01.T01 | MTR_5g090810 | 85.138 | 471 | 20 | 2 | 29 | 449 | 1 | 471 | 0.0 | 820 |
| MsG0580029676.01.T01 | MTR_5g090880 | 72.939 | 473 | 76 | 2 | 29 | 449 | 1 | 473 | 0.0 | 681 |
| MsG0580029676.01.T01 | MTR_3g450710 | 61.603 | 474 | 121 | 8 | 29 | 447 | 1 | 468 | 0.0 | 555 |
| MsG0580029676.01.T01 | MTR_3g450690 | 59.072 | 474 | 137 | 6 | 29 | 447 | 1 | 472 | 0.0 | 544 |
| MsG0580029676.01.T01 | MTR_5g026320 | 34.670 | 424 | 226 | 11 | 35 | 417 | 15 | 428 | 1.42e-66 | 220 |
| MsG0580029676.01.T01 | MTR_8g096530 | 27.166 | 427 | 233 | 17 | 59 | 435 | 28 | 426 | 1.59e-29 | 120 |
| MsG0580029676.01.T01 | MTR_8g075610 | 23.877 | 423 | 248 | 13 | 60 | 432 | 16 | 414 | 2.14e-27 | 113 |
| MsG0580029676.01.T01 | MTR_4g127650 | 24.236 | 458 | 260 | 12 | 51 | 442 | 20 | 456 | 9.72e-27 | 112 |
| MsG0580029676.01.T01 | MTR_4g097090 | 25.110 | 454 | 262 | 14 | 51 | 442 | 19 | 456 | 1.90e-26 | 111 |
| MsG0580029676.01.T01 | MTR_2g064495 | 23.608 | 449 | 264 | 16 | 38 | 432 | 3 | 426 | 4.45e-26 | 110 |
| MsG0580029676.01.T01 | MTR_2g105330 | 23.661 | 448 | 265 | 16 | 38 | 432 | 3 | 426 | 2.12e-25 | 108 |
| MsG0580029676.01.T01 | MTR_3g098980 | 26.385 | 379 | 208 | 14 | 59 | 390 | 35 | 389 | 2.52e-25 | 108 |
| MsG0580029676.01.T01 | MTR_4g007540 | 23.020 | 404 | 243 | 12 | 38 | 391 | 3 | 388 | 7.12e-25 | 106 |
| MsG0580029676.01.T01 | MTR_7g027175 | 25.722 | 381 | 211 | 14 | 59 | 391 | 37 | 393 | 2.39e-22 | 99.4 |
| MsG0580029676.01.T01 | MTR_1g040215 | 25.831 | 391 | 198 | 15 | 91 | 413 | 61 | 427 | 4.17e-22 | 99.0 |
| MsG0580029676.01.T01 | MTR_7g114520 | 25.404 | 433 | 233 | 16 | 36 | 407 | 9 | 412 | 2.15e-21 | 96.7 |
| MsG0580029676.01.T01 | MTR_5g076700 | 24.816 | 407 | 234 | 14 | 36 | 392 | 8 | 392 | 7.21e-21 | 95.1 |
| MsG0580029676.01.T01 | MTR_7g114560 | 24.324 | 444 | 256 | 15 | 36 | 424 | 8 | 426 | 1.45e-20 | 94.4 |
| MsG0580029676.01.T01 | MTR_7g114490 | 24.401 | 459 | 259 | 16 | 36 | 435 | 8 | 437 | 1.79e-20 | 94.4 |
| MsG0580029676.01.T01 | MTR_7g114470 | 24.939 | 413 | 227 | 15 | 36 | 392 | 9 | 394 | 5.69e-20 | 92.4 |
| MsG0580029676.01.T01 | MTR_7g114550 | 24.554 | 448 | 250 | 16 | 36 | 424 | 8 | 426 | 5.81e-20 | 92.4 |
| MsG0580029676.01.T01 | MTR_1g040320 | 24.859 | 354 | 212 | 12 | 91 | 413 | 61 | 391 | 4.23e-19 | 89.4 |
| MsG0580029676.01.T01 | MTR_3g026950 | 24.065 | 428 | 247 | 13 | 59 | 423 | 23 | 435 | 7.39e-19 | 89.0 |
| MsG0580029676.01.T01 | MTR_1g081660 | 25.789 | 380 | 200 | 16 | 75 | 401 | 57 | 407 | 3.32e-18 | 87.0 |
| MsG0580029676.01.T01 | MTR_4g013050 | 22.888 | 367 | 239 | 11 | 94 | 432 | 53 | 403 | 4.95e-16 | 80.1 |
| MsG0580029676.01.T01 | MTR_4g055170 | 23.820 | 445 | 260 | 18 | 45 | 428 | 19 | 445 | 3.38e-15 | 77.8 |
| MsG0580029676.01.T01 | MTR_8g079950 | 22.388 | 402 | 241 | 12 | 38 | 390 | 3 | 382 | 4.80e-13 | 71.2 |
| MsG0580029676.01.T01 | MTR_7g085930 | 24.804 | 383 | 209 | 15 | 94 | 406 | 59 | 432 | 1.04e-12 | 70.1 |
| MsG0580029676.01.T01 | MTR_5g084850 | 22.506 | 391 | 249 | 11 | 38 | 391 | 3 | 376 | 1.55e-12 | 69.7 |
| MsG0580029676.01.T01 | MTR_7g084940 | 24.455 | 413 | 225 | 15 | 35 | 391 | 13 | 394 | 7.83e-12 | 67.4 |
| MsG0580029676.01.T01 | MTR_5g084870 | 26.596 | 188 | 119 | 6 | 38 | 213 | 3 | 183 | 1.31e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029676.01.T01 | AT1G32910 | 55.437 | 469 | 131 | 12 | 36 | 447 | 11 | 458 | 7.89e-160 | 460 |
| MsG0580029676.01.T01 | AT1G78990 | 54.348 | 460 | 145 | 8 | 36 | 447 | 11 | 453 | 9.91e-160 | 459 |
| MsG0580029676.01.T01 | AT5G16410 | 49.024 | 461 | 171 | 12 | 36 | 447 | 34 | 479 | 6.68e-145 | 422 |
| MsG0580029676.01.T01 | AT1G31490 | 35.748 | 428 | 210 | 12 | 36 | 417 | 4 | 412 | 1.46e-68 | 225 |
| MsG0580029676.01.T01 | AT5G48930 | 24.439 | 446 | 265 | 15 | 38 | 432 | 3 | 427 | 7.12e-31 | 124 |
| MsG0580029676.01.T01 | AT5G41040 | 24.740 | 384 | 213 | 13 | 59 | 391 | 38 | 396 | 6.35e-24 | 103 |
| MsG0580029676.01.T01 | AT2G19070 | 24.183 | 459 | 267 | 16 | 46 | 442 | 12 | 451 | 6.72e-24 | 103 |
| MsG0580029676.01.T01 | AT5G41040 | 24.740 | 384 | 213 | 13 | 59 | 391 | 54 | 412 | 8.43e-24 | 103 |
| MsG0580029676.01.T01 | AT3G03480 | 25.390 | 449 | 235 | 19 | 36 | 413 | 17 | 436 | 1.09e-23 | 103 |
| MsG0580029676.01.T01 | AT5G57840 | 25.111 | 450 | 253 | 16 | 38 | 428 | 3 | 427 | 2.48e-22 | 99.4 |
| MsG0580029676.01.T01 | AT5G17540 | 24.781 | 456 | 229 | 18 | 32 | 416 | 3 | 415 | 3.66e-22 | 99.0 |
| MsG0580029676.01.T01 | AT3G48720 | 24.878 | 410 | 234 | 12 | 31 | 391 | 2 | 386 | 1.02e-21 | 97.4 |
| MsG0580029676.01.T01 | AT1G24430 | 25.313 | 399 | 225 | 16 | 38 | 390 | 5 | 376 | 7.01e-20 | 92.0 |
| MsG0580029676.01.T01 | AT5G63560 | 25.062 | 403 | 228 | 15 | 36 | 390 | 5 | 381 | 2.15e-19 | 90.5 |
| MsG0580029676.01.T01 | AT3G30280 | 26.024 | 415 | 238 | 11 | 38 | 408 | 6 | 395 | 5.49e-18 | 86.3 |
| MsG0580029676.01.T01 | AT5G47950 | 24.682 | 393 | 229 | 14 | 38 | 391 | 6 | 370 | 3.59e-16 | 80.9 |
| MsG0580029676.01.T01 | AT3G26040 | 22.850 | 407 | 231 | 16 | 38 | 390 | 3 | 380 | 8.97e-16 | 79.7 |
| MsG0580029676.01.T01 | AT1G27620 | 21.594 | 389 | 231 | 11 | 94 | 432 | 58 | 422 | 1.75e-15 | 78.6 |
| MsG0580029676.01.T01 | AT4G15390 | 24.129 | 402 | 238 | 15 | 38 | 391 | 8 | 390 | 2.41e-14 | 75.1 |
| MsG0580029676.01.T01 | AT4G15390 | 24.129 | 402 | 238 | 15 | 38 | 391 | 8 | 390 | 2.41e-14 | 75.1 |
| MsG0580029676.01.T01 | AT5G07080 | 22.753 | 356 | 206 | 8 | 88 | 390 | 64 | 403 | 3.25e-13 | 71.6 |
| MsG0580029676.01.T01 | AT1G24420 | 24.466 | 421 | 226 | 16 | 35 | 396 | 2 | 389 | 1.84e-12 | 69.3 |
| MsG0580029676.01.T01 | AT1G24420 | 24.466 | 421 | 226 | 16 | 35 | 396 | 2 | 389 | 1.84e-12 | 69.3 |
| MsG0580029676.01.T01 | AT5G38130 | 22.788 | 373 | 215 | 14 | 88 | 406 | 73 | 426 | 2.61e-12 | 68.9 |
| MsG0580029676.01.T01 | AT5G47980 | 29.032 | 186 | 118 | 4 | 35 | 212 | 2 | 181 | 6.19e-12 | 67.8 |
Find 115 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATTATGAATTCATATTT+TGG | 0.139298 | 5:-100662324 | MsG0580029676.01.T01:CDS |
| TTCTGCTTTCTTGTGGAAAA+TGG | 0.174817 | 5:-100662448 | MsG0580029676.01.T01:CDS |
| CCAGAGTCGAAGGTTGATTT+TGG | 0.189640 | 5:-100662060 | MsG0580029676.01.T01:CDS |
| AGTACACCATGTTTCTTCTT+TGG | 0.264818 | 5:+100663148 | None:intergenic |
| GTTTCTTATTATGCCTTTGC+TGG | 0.282844 | 5:-100663313 | MsG0580029676.01.T01:CDS |
| AAGAAACATGTTTGCAGAAT+AGG | 0.336073 | 5:+100662774 | None:intergenic |
| TAAGGGACACTTGCACTTCA+TGG | 0.343370 | 5:-100661920 | MsG0580029676.01.T01:CDS |
| CGAAAACAAGGTTGCGTTGT+TGG | 0.344546 | 5:+100662703 | None:intergenic |
| TTTGTCTTGTTTGGTGAATA+AGG | 0.344598 | 5:+100663606 | None:intergenic |
| ACATGGTGTACTTGCTGTTC+AGG | 0.345944 | 5:-100663137 | MsG0580029676.01.T01:intron |
| CAAACATGTTTCTTGTATCA+TGG | 0.346322 | 5:-100662765 | MsG0580029676.01.T01:CDS |
| GGTGACAGAGGAGCATTTCT+TGG | 0.346724 | 5:-100662199 | MsG0580029676.01.T01:CDS |
| ATTTCTTGGGTTTAATAGAT+TGG | 0.349608 | 5:-100662185 | MsG0580029676.01.T01:CDS |
| GAAGAGCATCGTCCAGTTCC+TGG | 0.354253 | 5:-100662159 | MsG0580029676.01.T01:CDS |
| AGCAGCCACTATTTCTTTGT+TGG | 0.356679 | 5:+100663498 | None:intergenic |
| TGCCAATGCCAAGCCCTAAA+AGG | 0.358606 | 5:-100661975 | MsG0580029676.01.T01:CDS |
| AAGAACACACCAACATCAAC+TGG | 0.358958 | 5:+100663418 | None:intergenic |
| TTTCCTTGGGGAGGTAGTGC+TGG | 0.358995 | 5:-100662006 | MsG0580029676.01.T01:CDS |
| TGTTTGGTGAATAAGGTAGA+AGG | 0.364531 | 5:+100663613 | None:intergenic |
| AAGAGATTGGTCTAAAGAAA+TGG | 0.367262 | 5:+100661884 | None:intergenic |
| AGTTAAGTATTTGTCTTGTT+TGG | 0.369498 | 5:+100663597 | None:intergenic |
| TCAAACACCCCACAATGTTA+TGG | 0.372360 | 5:+100663359 | None:intergenic |
| TTTCTTGGGTTTAATAGATT+GGG | 0.393187 | 5:-100662184 | MsG0580029676.01.T01:CDS |
| GAAAACAAGGTTGCGTTGTT+GGG | 0.393188 | 5:+100662704 | None:intergenic |
| GATCAAAGACTTGTTATCAT+TGG | 0.395387 | 5:+100662726 | None:intergenic |
| ATTTCTTTAGACCAATCTCT+TGG | 0.398784 | 5:-100661882 | MsG0580029676.01.T01:CDS |
| CCAAAATCAACCTTCGACTC+TGG | 0.403209 | 5:+100662060 | None:intergenic |
| ATCAAAGACTTGTTATCATT+GGG | 0.403427 | 5:+100662727 | None:intergenic |
| TTCCCTTCAACAGATTCATC+TGG | 0.408828 | 5:+100663178 | None:intergenic |
| AGAGATTGGTCTAAAGAAAT+GGG | 0.420021 | 5:+100661885 | None:intergenic |
| ATTAGGTCAAGGTTTGATAG+TGG | 0.421854 | 5:+100663448 | None:intergenic |
| CTAGTCTCCAAGATGTGTAT+TGG | 0.425893 | 5:-100663547 | MsG0580029676.01.T01:CDS |
| ATCCTTGCCAATCCAGGAAC+TGG | 0.426912 | 5:+100662147 | None:intergenic |
| CCAACATTTGTGGTATCTTC+AGG | 0.429306 | 5:-100662093 | MsG0580029676.01.T01:CDS |
| TTAGGAGAATGTTTCACTAC+TGG | 0.436101 | 5:+100663571 | None:intergenic |
| ATCATTGGGCCGAGCTATCT+CGG | 0.444473 | 5:+100662741 | None:intergenic |
| GCTTTACATGCACCTTCCTA+AGG | 0.445432 | 5:-100661938 | MsG0580029676.01.T01:CDS |
| GTGACAGAGGAGCATTTCTT+GGG | 0.453426 | 5:-100662198 | MsG0580029676.01.T01:CDS |
| ATGAAGTGCAAGTGTCCCTT+AGG | 0.455932 | 5:+100661922 | None:intergenic |
| CATCATTGTTTGAGTTGGCT+AGG | 0.456830 | 5:+100662502 | None:intergenic |
| TTTCCACAAGAAAGCAGAAA+AGG | 0.464789 | 5:+100662452 | None:intergenic |
| GGTTGCTGAAGCCGCTTCAA+TGG | 0.466106 | 5:-100662427 | MsG0580029676.01.T01:CDS |
| CTCTGCCAATGCAAGAGCAC+TGG | 0.470684 | 5:-100663474 | MsG0580029676.01.T01:CDS |
| ATCATTGTTTGAGTTGGCTA+GGG | 0.473433 | 5:+100662503 | None:intergenic |
| TCCAAGATGTGTATTGGAAA+AGG | 0.474951 | 5:-100663541 | MsG0580029676.01.T01:CDS |
| TTTCTTTAGACCAATCTCTT+GGG | 0.478661 | 5:-100661881 | MsG0580029676.01.T01:CDS |
| CACATCTTGGAGACTAGATT+AGG | 0.479587 | 5:+100663553 | None:intergenic |
| ACTACCATCATTGTTTGAGT+TGG | 0.491361 | 5:+100662497 | None:intergenic |
| ATGAGGTAATCCCAAGAGAT+TGG | 0.494084 | 5:+100661871 | None:intergenic |
| CAATAAATCCTTGCCAATCC+AGG | 0.495236 | 5:+100662141 | None:intergenic |
| TATTACCAACAAAGAAATAG+TGG | 0.495558 | 5:-100663503 | MsG0580029676.01.T01:CDS |
| GGCACCCACCATAACATTGT+GGG | 0.501925 | 5:-100663367 | MsG0580029676.01.T01:CDS |
| AAACATGTTTCTTGTATCAT+GGG | 0.504377 | 5:-100662764 | MsG0580029676.01.T01:CDS |
| AGGATTTATTGTGGTAGCAC+TGG | 0.506494 | 5:-100662129 | MsG0580029676.01.T01:CDS |
| GGTTGATAATCCGCTATGTT+GGG | 0.513429 | 5:-100662256 | MsG0580029676.01.T01:CDS |
| AATAAGCCTGTGATTACTAC+TGG | 0.513795 | 5:-100663388 | MsG0580029676.01.T01:CDS |
| TTCTGCTAATCTACCACCAT+AGG | 0.514784 | 5:+100662284 | None:intergenic |
| AATCCAGATGAATCTGTTGA+AGG | 0.515928 | 5:-100663181 | MsG0580029676.01.T01:CDS |
| GCATCGTCCAGTTCCTGGAT+TGG | 0.519656 | 5:-100662154 | MsG0580029676.01.T01:CDS |
| ATCCAGATGAATCTGTTGAA+GGG | 0.525156 | 5:-100663180 | MsG0580029676.01.T01:CDS |
| GGTAGCACTGGTGGAGAAGA+AGG | 0.530503 | 5:-100662117 | MsG0580029676.01.T01:CDS |
| TATCATGGGCCGAGATAGCT+CGG | 0.539461 | 5:-100662750 | MsG0580029676.01.T01:CDS |
| ATTTATTGTGGTAGCACTGG+TGG | 0.539802 | 5:-100662126 | MsG0580029676.01.T01:CDS |
| TGGTTGATAATCCGCTATGT+TGG | 0.541576 | 5:-100662257 | MsG0580029676.01.T01:CDS |
| AGAAGAAGGACCAACATTTG+TGG | 0.543509 | 5:-100662103 | MsG0580029676.01.T01:CDS |
| TTGTTATTGTGCAGGCAACT+TGG | 0.544767 | 5:-100662852 | MsG0580029676.01.T01:intron |
| AACACAAACTTTAATTGATG+AGG | 0.548741 | 5:+100661854 | None:intergenic |
| TTTGGAGGCGGCGGTGACAG+AGG | 0.555868 | 5:-100662211 | MsG0580029676.01.T01:CDS |
| AGTCATCACTTCACCAGCAA+AGG | 0.556336 | 5:+100663300 | None:intergenic |
| AGAAGTGACCGTCGAAAACA+AGG | 0.557353 | 5:+100662691 | None:intergenic |
| GCCCTAAAAGGAATGGTGAC+TGG | 0.557544 | 5:-100661963 | MsG0580029676.01.T01:CDS |
| GGAAGCCAGTGCTCTTGCAT+TGG | 0.564426 | 5:+100663469 | None:intergenic |
| CTTGGGTTTAATAGATTGGG+TGG | 0.568431 | 5:-100662181 | MsG0580029676.01.T01:CDS |
| TGGTAGATTAGCAGAAGAGC+TGG | 0.570353 | 5:-100662277 | MsG0580029676.01.T01:CDS |
| CGATTGTTGCAAAGTAACTC+AGG | 0.570367 | 5:+100663262 | None:intergenic |
| CTAGCCAACTCAAACAATGA+TGG | 0.574494 | 5:-100662501 | MsG0580029676.01.T01:CDS |
| AGAACACACCAACATCAACT+GGG | 0.575989 | 5:+100663419 | None:intergenic |
| CCTGAAGATACCACAAATGT+TGG | 0.579526 | 5:+100662093 | None:intergenic |
| CTTTACATGCACCTTCCTAA+GGG | 0.579880 | 5:-100661937 | MsG0580029676.01.T01:CDS |
| AGAAACAAGAGCCTCACCTA+AGG | 0.581520 | 5:+100663330 | None:intergenic |
| ACAAAGGTTTCCAGAGTCGA+AGG | 0.585762 | 5:-100662070 | MsG0580029676.01.T01:CDS |
| AACACCCCACAATGTTATGG+TGG | 0.588442 | 5:+100663362 | None:intergenic |
| TGGCACCCACCATAACATTG+TGG | 0.591108 | 5:-100663368 | MsG0580029676.01.T01:CDS |
| TTGTGGTATCTTCAGGACAA+AGG | 0.593564 | 5:-100662086 | MsG0580029676.01.T01:CDS |
| ATGCCAAGCCCTAAAAGGAA+TGG | 0.595010 | 5:-100661970 | MsG0580029676.01.T01:CDS |
| TCTGCTAATCTACCACCATA+GGG | 0.595034 | 5:+100662285 | None:intergenic |
| AGTGCAAGTGTCCCTTAGGA+AGG | 0.602305 | 5:+100661926 | None:intergenic |
| TTGTGGTTGACGGAAGAAAG+AGG | 0.605169 | 5:-100662374 | MsG0580029676.01.T01:CDS |
| GAGTTACTTTGCAACAATCG+TGG | 0.605999 | 5:-100663259 | MsG0580029676.01.T01:CDS |
| GTCCAGTTCCTGGATTGGCA+AGG | 0.607030 | 5:-100662149 | MsG0580029676.01.T01:CDS |
| GTTTGGTGAATAAGGTAGAA+GGG | 0.609525 | 5:+100663614 | None:intergenic |
| AATGTGCTTTCGATTCCCTA+TGG | 0.610089 | 5:-100662300 | MsG0580029676.01.T01:CDS |
| AATAGGCATCCGCTATGCGA+TGG | 0.614428 | 5:+100662791 | None:intergenic |
| AAGTAACTCAGGTTCACCCA+TGG | 0.618644 | 5:+100663273 | None:intergenic |
| GTGCTTTCGATTCCCTATGG+TGG | 0.619185 | 5:-100662297 | MsG0580029676.01.T01:CDS |
| TGAAGTGATGACTAACTCCA+TGG | 0.619717 | 5:-100663290 | MsG0580029676.01.T01:CDS |
| AAAATGGGGCTTGTGGTTGA+CGG | 0.619932 | 5:-100662384 | MsG0580029676.01.T01:CDS |
| CTTGTTCCAAAGAAGAAACA+TGG | 0.620389 | 5:-100663154 | MsG0580029676.01.T01:CDS |
| TGGGTGCCAGTAGTAATCAC+AGG | 0.626482 | 5:+100663382 | None:intergenic |
| ACACCCCACAATGTTATGGT+GGG | 0.636435 | 5:+100663363 | None:intergenic |
| GAAATGTGGTGGCTTAGTAG+TGG | 0.648560 | 5:-100662827 | MsG0580029676.01.T01:CDS |
| GGATTGGCAAGGATTTATTG+TGG | 0.648587 | 5:-100662138 | MsG0580029676.01.T01:CDS |
| GCACCCACCATAACATTGTG+GGG | 0.654145 | 5:-100663366 | MsG0580029676.01.T01:CDS |
| AAATGATAAGATCCAAACAC+AGG | 0.657847 | 5:+100662027 | None:intergenic |
| TGATAATCCGCTATGTTGGG+TGG | 0.663374 | 5:-100662253 | MsG0580029676.01.T01:CDS |
| GAACACACCAACATCAACTG+GGG | 0.669825 | 5:+100663420 | None:intergenic |
| GAGATTGGTCTAAAGAAATG+GGG | 0.678557 | 5:+100661886 | None:intergenic |
| AACACACCAACATCAACTGG+GGG | 0.688247 | 5:+100663421 | None:intergenic |
| CAGGCAACTTGGATGAAATG+TGG | 0.695087 | 5:-100662841 | MsG0580029676.01.T01:CDS |
| TAGCCAGCACTACCTCCCCA+AGG | 0.698597 | 5:+100662003 | None:intergenic |
| GAAGTGATGACTAACTCCAT+GGG | 0.699827 | 5:-100663289 | MsG0580029676.01.T01:CDS |
| GCAACTTGGATGAAATGTGG+TGG | 0.707819 | 5:-100662838 | MsG0580029676.01.T01:CDS |
| GGGACACTTGCACTTCATGG+AGG | 0.714604 | 5:-100661917 | MsG0580029676.01.T01:CDS |
| CGATCTGCCACCCAACATAG+CGG | 0.715687 | 5:+100662246 | None:intergenic |
| GGAAGAAAGAGGCTAAGCAA+CGG | 0.723389 | 5:-100662363 | MsG0580029676.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATAGAAACTTTTTTTT+GGG | - | Chr5:100662430-100662449 | MsG0580029676.01.T01:CDS | 15.0% |
| !!! | AGATTATGAATTCATATTTT+GGG | - | Chr5:100663160-100663179 | MsG0580029676.01.T01:CDS | 15.0% |
| !!! | ATAATACTAATTCTTTTGTA+AGG | + | Chr5:100662593-100662612 | None:intergenic | 15.0% |
| !!! | TAAACATAGAAACTTTTTTT+TGG | - | Chr5:100662429-100662448 | MsG0580029676.01.T01:CDS | 15.0% |
| !!! | TAATACTAATTCTTTTGTAA+GGG | + | Chr5:100662592-100662611 | None:intergenic | 15.0% |
| !! | GGTAAAATAGTATTAATTTC+AGG | - | Chr5:100662367-100662386 | MsG0580029676.01.T01:CDS | 20.0% |
| !!! | GAGATTATGAATTCATATTT+TGG | - | Chr5:100663159-100663178 | MsG0580029676.01.T01:CDS | 20.0% |
| ! | AAAACATTGTTGCAAAAATG+GGG | - | Chr5:100663085-100663104 | MsG0580029676.01.T01:intron | 25.0% |
| ! | AAACATGTTTCTTGTATCAT+GGG | - | Chr5:100662719-100662738 | MsG0580029676.01.T01:CDS | 25.0% |
| ! | ACATACATGTCATAAATTGA+AGG | + | Chr5:100662844-100662863 | None:intergenic | 25.0% |
| ! | AGTATATGCGACTTATTATT+GGG | + | Chr5:100662927-100662946 | None:intergenic | 25.0% |
| ! | ATTTCTTGGGTTTAATAGAT+TGG | - | Chr5:100663298-100663317 | MsG0580029676.01.T01:CDS | 25.0% |
| ! | GAAAACATTGTTGCAAAAAT+GGG | - | Chr5:100663084-100663103 | MsG0580029676.01.T01:intron | 25.0% |
| ! | TAGTATATGCGACTTATTAT+TGG | + | Chr5:100662928-100662947 | None:intergenic | 25.0% |
| ! | TATTACCAACAAAGAAATAG+TGG | - | Chr5:100661980-100661999 | MsG0580029676.01.T01:CDS | 25.0% |
| ! | TGAAAACATTGTTGCAAAAA+TGG | - | Chr5:100663083-100663102 | MsG0580029676.01.T01:intron | 25.0% |
| ! | TTTCTTGGGTTTAATAGATT+GGG | - | Chr5:100663299-100663318 | MsG0580029676.01.T01:CDS | 25.0% |
| !! | AATTATCATTGTTATTGTGC+AGG | - | Chr5:100662623-100662642 | MsG0580029676.01.T01:intron | 25.0% |
| !! | AGTTAAGTATTTGTCTTGTT+TGG | + | Chr5:100661889-100661908 | None:intergenic | 25.0% |
| !!! | ATCAAAGACTTGTTATCATT+GGG | + | Chr5:100662759-100662778 | None:intergenic | 25.0% |
| AAATGATAAGATCCAAACAC+AGG | + | Chr5:100663459-100663478 | None:intergenic | 30.0% | |
| AAGAAACATGTTTGCAGAAT+AGG | + | Chr5:100662712-100662731 | None:intergenic | 30.0% | |
| ACATGTCATAAATTGAAGGA+TGG | + | Chr5:100662840-100662859 | None:intergenic | 30.0% | |
| AGGCAAAGAATTATCATCAT+CGG | - | Chr5:100662534-100662553 | MsG0580029676.01.T01:intron | 30.0% | |
| ATAGATATCGACCAAACATT+TGG | - | Chr5:100662491-100662510 | MsG0580029676.01.T01:CDS | 30.0% | |
| ATTTCTTTAGACCAATCTCT+TGG | - | Chr5:100663601-100663620 | MsG0580029676.01.T01:CDS | 30.0% | |
| CAAACATGTTTCTTGTATCA+TGG | - | Chr5:100662718-100662737 | MsG0580029676.01.T01:CDS | 30.0% | |
| TTAATATCAGAGTCAGATTC+AGG | + | Chr5:100662898-100662917 | None:intergenic | 30.0% | |
| TTTCTTTAGACCAATCTCTT+GGG | - | Chr5:100663602-100663621 | MsG0580029676.01.T01:CDS | 30.0% | |
| TTTGAAAAATTCCTTAGGTG+AGG | - | Chr5:100662142-100662161 | MsG0580029676.01.T01:CDS | 30.0% | |
| ! | GTTTTCATTATCCATTGAAG+CGG | + | Chr5:100663070-100663089 | None:intergenic | 30.0% |
| ! | TGGATCTTATCATTTTCCTT+GGG | - | Chr5:100663464-100663483 | MsG0580029676.01.T01:CDS | 30.0% |
| ! | TTGGATCTTATCATTTTCCT+TGG | - | Chr5:100663463-100663482 | MsG0580029676.01.T01:CDS | 30.0% |
| !! | AAGAGATTGGTCTAAAGAAA+TGG | + | Chr5:100663602-100663621 | None:intergenic | 30.0% |
| !! | AGAGATTGGTCTAAAGAAAT+GGG | + | Chr5:100663601-100663620 | None:intergenic | 30.0% |
| !! | GATCAAAGACTTGTTATCAT+TGG | + | Chr5:100662760-100662779 | None:intergenic | 30.0% |
| !! | TTTGTCTTGTTTGGTGAATA+AGG | + | Chr5:100661880-100661899 | None:intergenic | 30.0% |
| AATAAGCCTGTGATTACTAC+TGG | - | Chr5:100662095-100662114 | MsG0580029676.01.T01:CDS | 35.0% | |
| AATCCAGATGAATCTGTTGA+AGG | - | Chr5:100662302-100662321 | MsG0580029676.01.T01:CDS | 35.0% | |
| ACTACCATCATTGTTTGAGT+TGG | + | Chr5:100662989-100663008 | None:intergenic | 35.0% | |
| AGTACACCATGTTTCTTCTT+TGG | + | Chr5:100662338-100662357 | None:intergenic | 35.0% | |
| ATCCAGATGAATCTGTTGAA+GGG | - | Chr5:100662303-100662322 | MsG0580029676.01.T01:CDS | 35.0% | |
| ATTAGGTCAAGGTTTGATAG+TGG | + | Chr5:100662038-100662057 | None:intergenic | 35.0% | |
| CTTGTTCCAAAGAAGAAACA+TGG | - | Chr5:100662329-100662348 | MsG0580029676.01.T01:CDS | 35.0% | |
| GGGTGTTTGAAAAATTCCTT+AGG | - | Chr5:100662137-100662156 | MsG0580029676.01.T01:CDS | 35.0% | |
| GTCATAAATTGAAGGATGGA+TGG | + | Chr5:100662836-100662855 | None:intergenic | 35.0% | |
| GTTTCTTATTATGCCTTTGC+TGG | - | Chr5:100662170-100662189 | MsG0580029676.01.T01:CDS | 35.0% | |
| TATGCGACTTATTATTGGGT+CGG | + | Chr5:100662923-100662942 | None:intergenic | 35.0% | |
| TCCAAGATGTGTATTGGAAA+AGG | - | Chr5:100661942-100661961 | MsG0580029676.01.T01:CDS | 35.0% | |
| TCTCGAGGGAAAATTAGAAT+AGG | - | Chr5:100662514-100662533 | MsG0580029676.01.T01:CDS | 35.0% | |
| TTAGGAGAATGTTTCACTAC+TGG | + | Chr5:100661915-100661934 | None:intergenic | 35.0% | |
| TTCTGCTTTCTTGTGGAAAA+TGG | - | Chr5:100663035-100663054 | MsG0580029676.01.T01:intron | 35.0% | |
| TTTCCACAAGAAAGCAGAAA+AGG | + | Chr5:100663034-100663053 | None:intergenic | 35.0% | |
| ! | AGATCGAGTTCATGAGTTTT+TGG | - | Chr5:100663254-100663273 | MsG0580029676.01.T01:CDS | 35.0% |
| ! | AGTTTTTAAACTTGTGCCCT+TGG | + | Chr5:100662410-100662429 | None:intergenic | 35.0% |
| ! | GGATCTTATCATTTTCCTTG+GGG | - | Chr5:100663465-100663484 | MsG0580029676.01.T01:CDS | 35.0% |
| ! | GTTTGGTGAATAAGGTAGAA+GGG | + | Chr5:100661872-100661891 | None:intergenic | 35.0% |
| ! | GTTTTTAAACTTGTGCCCTT+GGG | + | Chr5:100662409-100662428 | None:intergenic | 35.0% |
| ! | TCCTTTTCCAATACACATCT+TGG | + | Chr5:100661946-100661965 | None:intergenic | 35.0% |
| ! | TGTTTGGTGAATAAGGTAGA+AGG | + | Chr5:100661873-100661892 | None:intergenic | 35.0% |
| ! | TTTTTAAACTTGTGCCCTTG+GGG | + | Chr5:100662408-100662427 | None:intergenic | 35.0% |
| !! | ATCATTGTTTGAGTTGGCTA+GGG | + | Chr5:100662983-100663002 | None:intergenic | 35.0% |
| !! | GAGATTGGTCTAAAGAAATG+GGG | + | Chr5:100663600-100663619 | None:intergenic | 35.0% |
| AAGAACACACCAACATCAAC+TGG | + | Chr5:100662068-100662087 | None:intergenic | 40.0% | |
| AATGTGCTTTCGATTCCCTA+TGG | - | Chr5:100663183-100663202 | MsG0580029676.01.T01:CDS | 40.0% | |
| AGAACACACCAACATCAACT+GGG | + | Chr5:100662067-100662086 | None:intergenic | 40.0% | |
| AGAAGAAGGACCAACATTTG+TGG | - | Chr5:100663380-100663399 | MsG0580029676.01.T01:CDS | 40.0% | |
| AGGATTTATTGTGGTAGCAC+TGG | - | Chr5:100663354-100663373 | MsG0580029676.01.T01:CDS | 40.0% | |
| ATGAGGTAATCCCAAGAGAT+TGG | + | Chr5:100663615-100663634 | None:intergenic | 40.0% | |
| CAATAAATCCTTGCCAATCC+AGG | + | Chr5:100663345-100663364 | None:intergenic | 40.0% | |
| CACATCTTGGAGACTAGATT+AGG | + | Chr5:100661933-100661952 | None:intergenic | 40.0% | |
| CCAACATTTGTGGTATCTTC+AGG | - | Chr5:100663390-100663409 | MsG0580029676.01.T01:CDS | 40.0% | |
| CCTGAAGATACCACAAATGT+TGG | + | Chr5:100663393-100663412 | None:intergenic | 40.0% | |
| CGATTGTTGCAAAGTAACTC+AGG | + | Chr5:100662224-100662243 | None:intergenic | 40.0% | |
| CTAGCCAACTCAAACAATGA+TGG | - | Chr5:100662982-100663001 | MsG0580029676.01.T01:intron | 40.0% | |
| CTAGTCTCCAAGATGTGTAT+TGG | - | Chr5:100661936-100661955 | MsG0580029676.01.T01:CDS | 40.0% | |
| CTTGGGTTTAATAGATTGGG+TGG | - | Chr5:100663302-100663321 | MsG0580029676.01.T01:CDS | 40.0% | |
| CTTTACATGCACCTTCCTAA+GGG | - | Chr5:100663546-100663565 | MsG0580029676.01.T01:CDS | 40.0% | |
| GAAAACAAGGTTGCGTTGTT+GGG | + | Chr5:100662782-100662801 | None:intergenic | 40.0% | |
| GAAGTGATGACTAACTCCAT+GGG | - | Chr5:100662194-100662213 | MsG0580029676.01.T01:CDS | 40.0% | |
| TCAAACACCCCACAATGTTA+TGG | + | Chr5:100662127-100662146 | None:intergenic | 40.0% | |
| TCTGCTAATCTACCACCATA+GGG | + | Chr5:100663201-100663220 | None:intergenic | 40.0% | |
| TGAAGTGATGACTAACTCCA+TGG | - | Chr5:100662193-100662212 | MsG0580029676.01.T01:CDS | 40.0% | |
| TTCCCTTCAACAGATTCATC+TGG | + | Chr5:100662308-100662327 | None:intergenic | 40.0% | |
| TTCTGCTAATCTACCACCAT+AGG | + | Chr5:100663202-100663221 | None:intergenic | 40.0% | |
| TTGTGGTATCTTCAGGACAA+AGG | - | Chr5:100663397-100663416 | MsG0580029676.01.T01:CDS | 40.0% | |
| ! | AACCAGTCACCATTCCTTTT+AGG | + | Chr5:100663525-100663544 | None:intergenic | 40.0% |
| ! | ACCAGTCACCATTCCTTTTA+GGG | + | Chr5:100663524-100663543 | None:intergenic | 40.0% |
| ! | AGCAGCCACTATTTCTTTGT+TGG | + | Chr5:100661988-100662007 | None:intergenic | 40.0% |
| ! | AGTCCTTTTCTGCTTTCTTG+TGG | - | Chr5:100663028-100663047 | MsG0580029676.01.T01:intron | 40.0% |
| ! | ATTTATTGTGGTAGCACTGG+TGG | - | Chr5:100663357-100663376 | MsG0580029676.01.T01:CDS | 40.0% |
| ! | GAGTTACTTTGCAACAATCG+TGG | - | Chr5:100662224-100662243 | MsG0580029676.01.T01:CDS | 40.0% |
| ! | GGATTGGCAAGGATTTATTG+TGG | - | Chr5:100663345-100663364 | MsG0580029676.01.T01:CDS | 40.0% |
| ! | TCTTATCATTTTCCTTGGGG+AGG | - | Chr5:100663468-100663487 | MsG0580029676.01.T01:CDS | 40.0% |
| ! | TTGTTATTGTGCAGGCAACT+TGG | - | Chr5:100662631-100662650 | MsG0580029676.01.T01:intron | 40.0% |
| !! | AAATGTTAACTTGTGCCCCA+AGG | - | Chr5:100662390-100662409 | MsG0580029676.01.T01:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCCAA+GGG | - | Chr5:100662391-100662410 | MsG0580029676.01.T01:CDS | 40.0% |
| !! | AGTCGAAGGTTGATTTTGGA+TGG | - | Chr5:100663427-100663446 | MsG0580029676.01.T01:CDS | 40.0% |
| !! | AGTTCATGAGTTTTTGGAGG+CGG | - | Chr5:100663260-100663279 | MsG0580029676.01.T01:CDS | 40.0% |
| !! | CATCATTGTTTGAGTTGGCT+AGG | + | Chr5:100662984-100663003 | None:intergenic | 40.0% |
| !! | GGTTGATAATCCGCTATGTT+GGG | - | Chr5:100663227-100663246 | MsG0580029676.01.T01:CDS | 40.0% |
| !! | GTCGAAGGTTGATTTTGGAT+GGG | - | Chr5:100663428-100663447 | MsG0580029676.01.T01:CDS | 40.0% |
| !! | TCGAAGGTTGATTTTGGATG+GGG | - | Chr5:100663429-100663448 | MsG0580029676.01.T01:CDS | 40.0% |
| !! | TCGAGTTCATGAGTTTTTGG+AGG | - | Chr5:100663257-100663276 | MsG0580029676.01.T01:CDS | 40.0% |
| !! | TGGTTGATAATCCGCTATGT+TGG | - | Chr5:100663226-100663245 | MsG0580029676.01.T01:CDS | 40.0% |
| AAAATGGGGCTTGTGGTTGA+CGG | - | Chr5:100663099-100663118 | MsG0580029676.01.T01:intron | 45.0% | |
| AACACACCAACATCAACTGG+GGG | + | Chr5:100662065-100662084 | None:intergenic | 45.0% | |
| AACACCCCACAATGTTATGG+TGG | + | Chr5:100662124-100662143 | None:intergenic | 45.0% | |
| AAGTAACTCAGGTTCACCCA+TGG | + | Chr5:100662213-100662232 | None:intergenic | 45.0% | |
| ACAAAGGTTTCCAGAGTCGA+AGG | - | Chr5:100663413-100663432 | MsG0580029676.01.T01:CDS | 45.0% | |
| ACACCCCACAATGTTATGGT+GGG | + | Chr5:100662123-100662142 | None:intergenic | 45.0% | |
| AGAAACAAGAGCCTCACCTA+AGG | + | Chr5:100662156-100662175 | None:intergenic | 45.0% | |
| AGAAGTGACCGTCGAAAACA+AGG | + | Chr5:100662795-100662814 | None:intergenic | 45.0% | |
| AGTCATCACTTCACCAGCAA+AGG | + | Chr5:100662186-100662205 | None:intergenic | 45.0% | |
| ATGAAGTGCAAGTGTCCCTT+AGG | + | Chr5:100663564-100663583 | None:intergenic | 45.0% | |
| ATGCCAAGCCCTAAAAGGAA+TGG | - | Chr5:100663513-100663532 | MsG0580029676.01.T01:CDS | 45.0% | |
| ATTGAAGGATGGATGGAAGC+TGG | + | Chr5:100662829-100662848 | None:intergenic | 45.0% | |
| CAGGCAACTTGGATGAAATG+TGG | - | Chr5:100662642-100662661 | MsG0580029676.01.T01:intron | 45.0% | |
| CATCAACTGGGGGAAGAATT+AGG | + | Chr5:100662055-100662074 | None:intergenic | 45.0% | |
| CCAAAATCAACCTTCGACTC+TGG | + | Chr5:100663426-100663445 | None:intergenic | 45.0% | |
| CGAAAACAAGGTTGCGTTGT+TGG | + | Chr5:100662783-100662802 | None:intergenic | 45.0% | |
| GAAATGTGGTGGCTTAGTAG+TGG | - | Chr5:100662656-100662675 | MsG0580029676.01.T01:intron | 45.0% | |
| GAACACACCAACATCAACTG+GGG | + | Chr5:100662066-100662085 | None:intergenic | 45.0% | |
| GACCAAACATTTGGTCTCGA+GGG | - | Chr5:100662500-100662519 | MsG0580029676.01.T01:CDS | 45.0% | |
| GCAACTTGGATGAAATGTGG+TGG | - | Chr5:100662645-100662664 | MsG0580029676.01.T01:intron | 45.0% | |
| GCTTTACATGCACCTTCCTA+AGG | - | Chr5:100663545-100663564 | MsG0580029676.01.T01:CDS | 45.0% | |
| GGAAGAAAGAGGCTAAGCAA+CGG | - | Chr5:100663120-100663139 | MsG0580029676.01.T01:intron | 45.0% | |
| TAAGGGACACTTGCACTTCA+TGG | - | Chr5:100663563-100663582 | MsG0580029676.01.T01:CDS | 45.0% | |
| TGATAATCCGCTATGTTGGG+TGG | - | Chr5:100663230-100663249 | MsG0580029676.01.T01:CDS | 45.0% | |
| TGGTAGATTAGCAGAAGAGC+TGG | - | Chr5:100663206-100663225 | MsG0580029676.01.T01:CDS | 45.0% | |
| TGTTGCAAAAATGGGGCTTG+TGG | - | Chr5:100663092-100663111 | MsG0580029676.01.T01:intron | 45.0% | |
| TTCCCTCGAGACCAAATGTT+TGG | + | Chr5:100662505-100662524 | None:intergenic | 45.0% | |
| TTGAAGGATGGATGGAAGCT+GGG | + | Chr5:100662828-100662847 | None:intergenic | 45.0% | |
| TTGTGGTTGACGGAAGAAAG+AGG | - | Chr5:100663109-100663128 | MsG0580029676.01.T01:intron | 45.0% | |
| ! | ATTCTTCCCCCAGTTGATGT+TGG | - | Chr5:100662056-100662075 | MsG0580029676.01.T01:CDS | 45.0% |
| ! | CACTTTTGACCATCGCATAG+CGG | - | Chr5:100662683-100662702 | MsG0580029676.01.T01:intron | 45.0% |
| ! | TCAGAGTCAGATTCAGGTTC+AGG | + | Chr5:100662892-100662911 | None:intergenic | 45.0% |
| !! | ACATGGTGTACTTGCTGTTC+AGG | - | Chr5:100662346-100662365 | MsG0580029676.01.T01:CDS | 45.0% |
| !! | CCAGAGTCGAAGGTTGATTT+TGG | - | Chr5:100663423-100663442 | MsG0580029676.01.T01:CDS | 45.0% |
| !! | CGAAGGTTGATTTTGGATGG+GGG | - | Chr5:100663430-100663449 | MsG0580029676.01.T01:CDS | 45.0% |
| !! | GTGACAGAGGAGCATTTCTT+GGG | - | Chr5:100663285-100663304 | MsG0580029676.01.T01:CDS | 45.0% |
| !!! | CAACGCAACCTTGTTTTCGA+CGG | - | Chr5:100662784-100662803 | MsG0580029676.01.T01:CDS | 45.0% |
| !!! | TCACCATTCCTTTTAGGGCT+TGG | + | Chr5:100663519-100663538 | None:intergenic | 45.0% |
| !!! | TTCCTTTTAGGGCTTGGCAT+TGG | + | Chr5:100663513-100663532 | None:intergenic | 45.0% |
| AATAGGCATCCGCTATGCGA+TGG | + | Chr5:100662695-100662714 | None:intergenic | 50.0% | |
| AGTGCAAGTGTCCCTTAGGA+AGG | + | Chr5:100663560-100663579 | None:intergenic | 50.0% | |
| ATCATTGGGCCGAGCTATCT+CGG | + | Chr5:100662745-100662764 | None:intergenic | 50.0% | |
| ATCCTTGCCAATCCAGGAAC+TGG | + | Chr5:100663339-100663358 | None:intergenic | 50.0% | |
| CGACCAAACATTTGGTCTCG+AGG | - | Chr5:100662499-100662518 | MsG0580029676.01.T01:CDS | 50.0% | |
| CTGGGGGAAGAATTAGGTCA+AGG | + | Chr5:100662049-100662068 | None:intergenic | 50.0% | |
| GCACCCACCATAACATTGTG+GGG | - | Chr5:100662117-100662136 | MsG0580029676.01.T01:CDS | 50.0% | |
| GCCCTAAAAGGAATGGTGAC+TGG | - | Chr5:100663520-100663539 | MsG0580029676.01.T01:CDS | 50.0% | |
| GGCACCCACCATAACATTGT+GGG | - | Chr5:100662116-100662135 | MsG0580029676.01.T01:CDS | 50.0% | |
| GTGCTTTCGATTCCCTATGG+TGG | - | Chr5:100663186-100663205 | MsG0580029676.01.T01:CDS | 50.0% | |
| TATCATGGGCCGAGATAGCT+CGG | - | Chr5:100662733-100662752 | MsG0580029676.01.T01:CDS | 50.0% | |
| TGCCAATGCCAAGCCCTAAA+AGG | - | Chr5:100663508-100663527 | MsG0580029676.01.T01:CDS | 50.0% | |
| TGGCACCCACCATAACATTG+TGG | - | Chr5:100662115-100662134 | MsG0580029676.01.T01:CDS | 50.0% | |
| TGGGTGCCAGTAGTAATCAC+AGG | + | Chr5:100662104-100662123 | None:intergenic | 50.0% | |
| TGGTGGAGGTAGATCAGAGA+CGG | + | Chr5:100662869-100662888 | None:intergenic | 50.0% | |
| ! | GAGTCAGATTCAGGTTCAGG+TGG | + | Chr5:100662889-100662908 | None:intergenic | 50.0% |
| ! | TCAGATTCAGGTTCAGGTGG+TGG | + | Chr5:100662886-100662905 | None:intergenic | 50.0% |
| !! | GGTGACAGAGGAGCATTTCT+TGG | - | Chr5:100663284-100663303 | MsG0580029676.01.T01:CDS | 50.0% |
| !! | TCATGAGTTTTTGGAGGCGG+CGG | - | Chr5:100663263-100663282 | MsG0580029676.01.T01:CDS | 50.0% |
| ATGGATGGAAGCTGGGCGTT+GGG | + | Chr5:100662821-100662840 | None:intergenic | 55.0% | |
| CGATCTGCCACCCAACATAG+CGG | + | Chr5:100663240-100663259 | None:intergenic | 55.0% | |
| GCATCGTCCAGTTCCTGGAT+TGG | - | Chr5:100663329-100663348 | MsG0580029676.01.T01:CDS | 55.0% | |
| GGAAGCCAGTGCTCTTGCAT+TGG | + | Chr5:100662017-100662036 | None:intergenic | 55.0% | |
| GGGACACTTGCACTTCATGG+AGG | - | Chr5:100663566-100663585 | MsG0580029676.01.T01:CDS | 55.0% | |
| GGTGGAGGTAGATCAGAGAC+GGG | + | Chr5:100662868-100662887 | None:intergenic | 55.0% | |
| GGTTGCTGAAGCCGCTTCAA+TGG | - | Chr5:100663056-100663075 | MsG0580029676.01.T01:intron | 55.0% | |
| GTGGAGGTAGATCAGAGACG+GGG | + | Chr5:100662867-100662886 | None:intergenic | 55.0% | |
| TTTCCTTGGGGAGGTAGTGC+TGG | - | Chr5:100663477-100663496 | MsG0580029676.01.T01:CDS | 55.0% | |
| ! | CTCTGCCAATGCAAGAGCAC+TGG | - | Chr5:100662009-100662028 | MsG0580029676.01.T01:CDS | 55.0% |
| ! | GATTCAGGTTCAGGTGGTGG+AGG | + | Chr5:100662883-100662902 | None:intergenic | 55.0% |
| !! | GAAGAGCATCGTCCAGTTCC+TGG | - | Chr5:100663324-100663343 | MsG0580029676.01.T01:CDS | 55.0% |
| !! | GGTAGCACTGGTGGAGAAGA+AGG | - | Chr5:100663366-100663385 | MsG0580029676.01.T01:CDS | 55.0% |
| !! | GTCCAGTTCCTGGATTGGCA+AGG | - | Chr5:100663334-100663353 | MsG0580029676.01.T01:CDS | 55.0% |
| !!! | GGACTCGAGTTTTGAGCGCT+TGG | + | Chr5:100663013-100663032 | None:intergenic | 55.0% |
| GATGGATGGAAGCTGGGCGT+TGG | + | Chr5:100662822-100662841 | None:intergenic | 60.0% | |
| GGATGGGGGAAGCCTGTGTT+TGG | - | Chr5:100663444-100663463 | MsG0580029676.01.T01:CDS | 60.0% | |
| TAGCCAGCACTACCTCCCCA+AGG | + | Chr5:100663483-100663502 | None:intergenic | 60.0% | |
| ! | TGGATGGAAGCTGGGCGTTG+GGG | + | Chr5:100662820-100662839 | None:intergenic | 60.0% |
| TTTGGAGGCGGCGGTGACAG+AGG | - | Chr5:100663272-100663291 | MsG0580029676.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 100661864 | 100663641 | 100661864 | ID=MsG0580029676.01;Name=MsG0580029676.01 |
| Chr5 | mRNA | 100661864 | 100663641 | 100661864 | ID=MsG0580029676.01.T01;Parent=MsG0580029676.01;Name=MsG0580029676.01.T01;_AED=0.11;_eAED=0.11;_QI=0|0.5|0|1|1|1|3|0|449 |
| Chr5 | exon | 100663138 | 100663641 | 100663138 | ID=MsG0580029676.01.T01:exon:26472;Parent=MsG0580029676.01.T01 |
| Chr5 | exon | 100662700 | 100662860 | 100662700 | ID=MsG0580029676.01.T01:exon:26471;Parent=MsG0580029676.01.T01 |
| Chr5 | exon | 100661864 | 100662548 | 100661864 | ID=MsG0580029676.01.T01:exon:26470;Parent=MsG0580029676.01.T01 |
| Chr5 | CDS | 100663138 | 100663641 | 100663138 | ID=MsG0580029676.01.T01:cds;Parent=MsG0580029676.01.T01 |
| Chr5 | CDS | 100662700 | 100662860 | 100662700 | ID=MsG0580029676.01.T01:cds;Parent=MsG0580029676.01.T01 |
| Chr5 | CDS | 100661864 | 100662548 | 100661864 | ID=MsG0580029676.01.T01:cds;Parent=MsG0580029676.01.T01 |
| Gene Sequence |
| Protein sequence |
