AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013547.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013547.01.T01 MTR_3g046320 99.432 176 1 0 20 195 1 176 6.46e-131 365
MsG0380013547.01.T01 MTR_3g046320 98.851 174 2 0 22 195 5 178 1.06e-128 359
MsG0380013547.01.T01 MTR_5g091135 93.258 178 12 0 18 195 1 178 2.47e-123 345
MsG0380013547.01.T01 MTR_5g091120 93.258 178 12 0 18 195 1 178 2.47e-123 345
MsG0380013547.01.T01 MTR_2g098000 93.258 178 12 0 18 195 1 178 2.47e-123 345
MsG0380013547.01.T01 MTR_2g019720 69.863 73 22 0 109 181 1 73 9.13e-32 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013547.01.T01 AT2G34480 89.080 174 19 0 22 195 44 217 5.28e-117 331
MsG0380013547.01.T01 AT2G34480 89.080 174 19 0 22 195 5 178 6.99e-117 329
MsG0380013547.01.T01 AT1G29965 88.953 172 19 0 24 195 7 178 1.16e-115 326
MsG0380013547.01.T01 AT3G14600 87.356 174 22 0 22 195 5 178 2.07e-114 323
MsG0380013547.01.T01 AT1G29970 88.953 172 19 0 24 195 141 312 6.77e-113 324

Find 61 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATATAAAGAAAATTAT+TGG 0.223219 3:-40512797 None:intergenic
AGATTAAGAACTACGGAATT+TGG 0.227031 3:+40512297 MsG0380013547.01.T01:CDS
TACCGCGACACTACACTAAA+TGG 0.308319 3:+40512365 MsG0380013547.01.T01:CDS
TTGTCTTGAGCTTCCTGGTT+GGG 0.316740 3:-40512559 None:intergenic
GTATGTTGTCTTGAGCTTCC+TGG 0.318485 3:-40512564 None:intergenic
GATTTACCAGAACTTGGATT+TGG 0.342805 3:-40509716 None:intergenic
CATTGGTGTTTAAGAAGATT+AGG 0.359879 3:+40512534 MsG0380013547.01.T01:CDS
CTTGTACATGTTGTGATATC+CGG 0.368635 3:-40512339 None:intergenic
ATTAAATATTTCTGATGCAT+TGG 0.384053 3:+40509536 None:intergenic
AATTCCGTAGTTCTTAATCT+TGG 0.384261 3:-40512294 None:intergenic
AACTTCATCCTATAGATCTT+AGG 0.390754 3:-40509670 None:intergenic
GCGAATTACATAAACATGTT+GGG 0.396902 3:-40512599 None:intergenic
CGAAATACATACCTCATTGA+TGG 0.398520 3:-40510064 None:intergenic
TCCCAGCTAATCTTTGCAAA+AGG 0.406086 3:+40512471 MsG0380013547.01.T01:CDS
ATGAACATCCTAAGATCTAT+AGG 0.408451 3:+40509662 MsG0380013547.01.T01:CDS
TTGCTCATCTTGGATTCGTT+CGG 0.409213 3:+40512761 MsG0380013547.01.T01:three_prime_UTR
TGTCTTGAGCTTCCTGGTTG+GGG 0.409521 3:-40512558 None:intergenic
TTGTGGCAGTCTTGATGATC+TGG 0.419281 3:-40512448 None:intergenic
GGATTTGGCACGCACTTCAT+TGG 0.425117 3:-40509701 None:intergenic
CTTCGATACCAGAGCCGAAC+CGG 0.434164 3:+40512320 MsG0380013547.01.T01:CDS
CATTGGAGAGTTTGTAATGA+TGG 0.440620 3:+40509553 MsG0380013547.01.T01:CDS
CCGTAGTTCTTAATCTTGGT+TGG 0.442883 3:-40512290 None:intergenic
TGCGAATTACATAAACATGT+TGG 0.455016 3:-40512600 None:intergenic
ATCTTGGATTCGTTCGGAGT+TGG 0.457607 3:+40512767 MsG0380013547.01.T01:three_prime_UTR
TGCGTGCCAAATCCAAGTTC+TGG 0.459519 3:+40509710 MsG0380013547.01.T01:CDS
TGTGATATCCGGTTCGGCTC+TGG 0.459842 3:-40512328 None:intergenic
TAATCTTCTTAAACACCAAT+GGG 0.461177 3:-40512532 None:intergenic
ATTGTTGATTTACCAGAACT+TGG 0.466517 3:-40509722 None:intergenic
TGAATATATGTACAATGAAA+TGG 0.482427 3:+40512394 MsG0380013547.01.T01:CDS
CCCAGCTAATCTTTGCAAAA+GGG 0.489014 3:+40512472 MsG0380013547.01.T01:CDS
GATCTATAGGATGAAGTTGT+GGG 0.489458 3:+40509675 MsG0380013547.01.T01:CDS
CTCTCCCCACAACCTGGTAC+TGG 0.493497 3:-40509621 None:intergenic
ACATGTTGTGATATCCGGTT+CGG 0.502939 3:-40512334 None:intergenic
TGGCTTCACGTCATAGAGTC+AGG 0.506716 3:+40512414 MsG0380013547.01.T01:CDS
TTTGGCACGCACTTCATTGG+TGG 0.507151 3:-40509698 None:intergenic
GTTGTCTTGAGCTTCCTGGT+TGG 0.517024 3:-40512560 None:intergenic
GTATCACCAGTACCAGGTTG+TGG 0.520361 3:+40509615 MsG0380013547.01.T01:CDS
GTGAAACACATTGTAACAAA+CGG 0.521125 3:+40512695 MsG0380013547.01.T01:three_prime_UTR
AGATCTATAGGATGAAGTTG+TGG 0.528188 3:+40509674 MsG0380013547.01.T01:CDS
CTAATCTTCTTAAACACCAA+TGG 0.530693 3:-40512533 None:intergenic
TATCACCAGTACCAGGTTGT+GGG 0.531253 3:+40509616 MsG0380013547.01.T01:CDS
AGAAGGTTAAGAAGAGCAAT+GGG 0.531968 3:+40510031 MsG0380013547.01.T01:CDS
CGGATATCACAACATGTACA+AGG 0.534565 3:+40512340 MsG0380013547.01.T01:CDS
GCTTGATTCGTTATAAGCAT+AGG 0.553603 3:+40512657 MsG0380013547.01.T01:intron
CTCTAAAATCAAGTTCCCAT+TGG 0.554953 3:+40512517 MsG0380013547.01.T01:CDS
GGTTAAGAAGAGCAATGGGC+AGG 0.558529 3:+40510035 MsG0380013547.01.T01:CDS
GGATGTTCATCCTTCTCAGT+AGG 0.562491 3:-40509649 None:intergenic
GTCTTGATGATCTGGATGCA+TGG 0.564131 3:-40512440 None:intergenic
GTCTTGAGCTTCCTGGTTGG+GGG 0.565257 3:-40512557 None:intergenic
GCAAAGATTAGCTGGGATTG+TGG 0.567461 3:-40512465 None:intergenic
AAGAAGGTTAAGAAGAGCAA+TGG 0.574791 3:+40510030 MsG0380013547.01.T01:CDS
CCAACCAAGATTAAGAACTA+CGG 0.592484 3:+40512290 MsG0380013547.01.T01:CDS
GAGAGCTCTTCCTACTGAGA+AGG 0.593469 3:+40509639 MsG0380013547.01.T01:CDS
GAAGAGCTCTCCCCACAACC+TGG 0.596843 3:-40509627 None:intergenic
ATTGGAGAGTTTGTAATGAT+GGG 0.602955 3:+40509554 MsG0380013547.01.T01:CDS
GAATCAGTATCACCAGTACC+AGG 0.603715 3:+40509609 MsG0380013547.01.T01:CDS
GCATAGGAAGAACTTAGAGA+AGG 0.614183 3:+40512673 MsG0380013547.01.T01:three_prime_UTR
GAAGCTCAAGACAACATACA+AGG 0.626427 3:+40512568 MsG0380013547.01.T01:CDS
ATCACCAGTACCAGGTTGTG+GGG 0.633258 3:+40509617 MsG0380013547.01.T01:CDS
CACCATTTAGTGTAGTGTCG+CGG 0.677168 3:-40512367 None:intergenic
GCAGGTGCTTGCCATCAATG+AGG 0.695053 3:+40510053 MsG0380013547.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAATATAAAGAAAATTAT+TGG - Chr3:40512800-40512819 None:intergenic 10.0%
!! TTATATTATTTATAGAAAAC+CGG + Chr3:40511187-40511206 MsG0380013547.01.T01:intron 10.0%
!! AATAACAATCAAAACAAAAA+TGG - Chr3:40512736-40512755 None:intergenic 15.0%
!! TATATTATTTATAGAAAACC+GGG + Chr3:40511188-40511207 MsG0380013547.01.T01:intron 15.0%
!!! ACAAAGGTTATAAAATATTT+TGG + Chr3:40511811-40511830 MsG0380013547.01.T01:intron 15.0%
!!! TTTTTGTTTTGAAATTTTGT+AGG + Chr3:40509989-40510008 MsG0380013547.01.T01:intron 15.0%
!! AACGTTAAAAAAAACAAGTT+GGG - Chr3:40511264-40511283 None:intergenic 20.0%
!! AAGCTATACATATATTGTTA+GGG + Chr3:40511888-40511907 MsG0380013547.01.T01:intron 20.0%
!! ACTCTATTAAAACATTTAGA+AGG + Chr3:40510534-40510553 MsG0380013547.01.T01:intron 20.0%
!! CTCTATTAAAACATTTAGAA+GGG + Chr3:40510535-40510554 MsG0380013547.01.T01:intron 20.0%
!! GAAATACAACAATAAAACAA+AGG - Chr3:40510150-40510169 None:intergenic 20.0%
!! TAAGCTATACATATATTGTT+AGG + Chr3:40511887-40511906 MsG0380013547.01.T01:intron 20.0%
!! TATAATTTACTCTTCTTACT+AGG - Chr3:40510481-40510500 None:intergenic 20.0%
!! TGAATATATGTACAATGAAA+TGG + Chr3:40512394-40512413 MsG0380013547.01.T01:CDS 20.0%
!! TTAAACACAAACTTACAATA+GGG + Chr3:40511419-40511438 MsG0380013547.01.T01:intron 20.0%
!! TTTAAACACAAACTTACAAT+AGG + Chr3:40511418-40511437 MsG0380013547.01.T01:intron 20.0%
!!! ATAAACTTTTACCTTTGTAA+TGG - Chr3:40510889-40510908 None:intergenic 20.0%
!!! ATGAGAAAAATGAAATTTTC+TGG + Chr3:40511163-40511182 MsG0380013547.01.T01:intron 20.0%
!!! ATGTTAAAAAGTAGTATTGA+TGG + Chr3:40510907-40510926 MsG0380013547.01.T01:intron 20.0%
!!! GTTAAACTATACACATTTTA+CGG + Chr3:40511588-40511607 MsG0380013547.01.T01:intron 20.0%
!!! TGAAACATGAATTTTAACTA+AGG + Chr3:40510414-40510433 MsG0380013547.01.T01:intron 20.0%
!!! TGAGAAAAATGAAATTTTCT+GGG + Chr3:40511164-40511183 MsG0380013547.01.T01:intron 20.0%
!!! TGTTAAAAAGTAGTATTGAT+GGG + Chr3:40510908-40510927 MsG0380013547.01.T01:intron 20.0%
!!! TTATTTTAATTTGCTCATCT+TGG + Chr3:40512751-40512770 MsG0380013547.01.T01:three_prime_UTR 20.0%
! AAAAAACAAAATGTGATCAC+CGG - Chr3:40509974-40509993 None:intergenic 25.0%
! AAATGATTGAAAACACGTTT+AGG + Chr3:40511055-40511074 MsG0380013547.01.T01:intron 25.0%
! AATTAAAACCTAGAACTTTG+AGG - Chr3:40512218-40512237 None:intergenic 25.0%
! AGAAGAGTAAATTATAGCTA+AGG + Chr3:40510485-40510504 MsG0380013547.01.T01:intron 25.0%
! AGCTATACATATATTGTTAG+GGG + Chr3:40511889-40511908 MsG0380013547.01.T01:intron 25.0%
! AGGTAAATTATATCGAAGTT+TGG + Chr3:40511918-40511937 MsG0380013547.01.T01:intron 25.0%
! ATCAGTCATTTAACTAAGTA+CGG - Chr3:40511473-40511492 None:intergenic 25.0%
! GAACGTTAAAAAAAACAAGT+TGG - Chr3:40511265-40511284 None:intergenic 25.0%
! GAATCATGCATCAAAAATTT+AGG + Chr3:40511982-40512001 MsG0380013547.01.T01:intron 25.0%
! TAATCTTCTTAAACACCAAT+GGG - Chr3:40512535-40512554 None:intergenic 25.0%
! TTATGCAGTACTCTATTTAA+CGG - Chr3:40512116-40512135 None:intergenic 25.0%
!! ATCAATTTTTATATGTCCTC+TGG + Chr3:40511852-40511871 MsG0380013547.01.T01:intron 25.0%
!! ATTACAATTTTACCCTTAAG+TGG - Chr3:40510678-40510697 None:intergenic 25.0%
!! GAAAACGAAAACAAAGTATT+TGG + Chr3:40510995-40511014 MsG0380013547.01.T01:intron 25.0%
!! TTACAATTTTACCCTTAAGT+GGG - Chr3:40510677-40510696 None:intergenic 25.0%
!!! AACATGAATTTTAACTAAGG+TGG + Chr3:40510417-40510436 MsG0380013547.01.T01:intron 25.0%
!!! CTGATATTTTCTTTGATTTG+AGG - Chr3:40512049-40512068 None:intergenic 25.0%
!!! TAAGATGGCAAAATTTTAAC+TGG + Chr3:40510241-40510260 MsG0380013547.01.T01:intron 25.0%
AACTTCATCCTATAGATCTT+AGG - Chr3:40509673-40509692 None:intergenic 30.0%
AATTCCGTAGTTCTTAATCT+TGG - Chr3:40512297-40512316 None:intergenic 30.0%
ACAATAAAACAAAGGCTTCA+TGG - Chr3:40510142-40510161 None:intergenic 30.0%
AGAAAACGAAACAGAGTTAT+GGG + Chr3:40510964-40510983 MsG0380013547.01.T01:intron 30.0%
AGATTAAGAACTACGGAATT+TGG + Chr3:40512297-40512316 MsG0380013547.01.T01:CDS 30.0%
ATGAACATCCTAAGATCTAT+AGG + Chr3:40509662-40509681 MsG0380013547.01.T01:CDS 30.0%
ATTGGAGAGTTTGTAATGAT+GGG + Chr3:40509554-40509573 MsG0380013547.01.T01:CDS 30.0%
CAAGAATTGAGAAAAATGCA+TGG - Chr3:40511527-40511546 None:intergenic 30.0%
CTAATCTTCTTAAACACCAA+TGG - Chr3:40512536-40512555 None:intergenic 30.0%
CTCTTGCATATTCAAGAATA+TGG + Chr3:40511620-40511639 MsG0380013547.01.T01:intron 30.0%
GAGGATTCGAAAAAAAATAG+TGG + Chr3:40510299-40510318 MsG0380013547.01.T01:intron 30.0%
GATTCTCTGTTGTTAAACTT+TGG + Chr3:40511490-40511509 MsG0380013547.01.T01:intron 30.0%
GCGAATTACATAAACATGTT+GGG - Chr3:40512602-40512621 None:intergenic 30.0%
GTGAAACACATTGTAACAAA+CGG + Chr3:40512695-40512714 MsG0380013547.01.T01:three_prime_UTR 30.0%
GTTTCAATTGCAGAAAATAG+CGG - Chr3:40510400-40510419 None:intergenic 30.0%
TATATCGAAGTTTGGACATA+GGG + Chr3:40511926-40511945 MsG0380013547.01.T01:intron 30.0%
TGCGAATTACATAAACATGT+TGG - Chr3:40512603-40512622 None:intergenic 30.0%
TTATATCGAAGTTTGGACAT+AGG + Chr3:40511925-40511944 MsG0380013547.01.T01:intron 30.0%
TTGTAAAATTGCAGCACAAT+AGG + Chr3:40510347-40510366 MsG0380013547.01.T01:intron 30.0%
TTGTTCATGAAAAGAGTTAC+CGG + Chr3:40509952-40509971 MsG0380013547.01.T01:intron 30.0%
! AAACTTACAATAGGGCATTA+TGG + Chr3:40511427-40511446 MsG0380013547.01.T01:intron 30.0%
! AAGAAACTGTAGAACTTGTT+AGG + Chr3:40511773-40511792 MsG0380013547.01.T01:intron 30.0%
! CAAAGTATTTGGTTGAAAAC+AGG + Chr3:40511006-40511025 MsG0380013547.01.T01:intron 30.0%
! CATTGGTGTTTAAGAAGATT+AGG + Chr3:40512534-40512553 MsG0380013547.01.T01:CDS 30.0%
! CATTTTTCTCAATTCTTGTC+AGG + Chr3:40511529-40511548 MsG0380013547.01.T01:intron 30.0%
! GCATTGTTCTTATTTGATGA+TGG + Chr3:40509767-40509786 MsG0380013547.01.T01:intron 30.0%
! GTAAGTTTGTGTTTAAAGCA+AGG - Chr3:40511415-40511434 None:intergenic 30.0%
! TTTGTTCTGTTGATTAGTTC+TGG + Chr3:40509800-40509819 MsG0380013547.01.T01:intron 30.0%
!! AGAAACTGTAGAACTTGTTA+GGG + Chr3:40511774-40511793 MsG0380013547.01.T01:intron 30.0%
!! ATTGTTGATTTACCAGAACT+TGG - Chr3:40509725-40509744 None:intergenic 30.0%
!! GTTCTAGTTTGTCTAATAGT+GGG - Chr3:40512174-40512193 None:intergenic 30.0%
!! GTTTCTATGGATTGTCTTTT+GGG - Chr3:40510860-40510879 None:intergenic 30.0%
!! TGTTTCTATGGATTGTCTTT+TGG - Chr3:40510861-40510880 None:intergenic 30.0%
!! TGTTTTTGCATTGCTCTTTT+TGG + Chr3:40509878-40509897 MsG0380013547.01.T01:intron 30.0%
!!! ATCGTTTTTTCCATGTTTGT+TGG - Chr3:40511310-40511329 None:intergenic 30.0%
!!! CGTTTTTTTGTTTGTTGTTG+TGG + Chr3:40509582-40509601 MsG0380013547.01.T01:CDS 30.0%
!!! GAATTTTAACTAAGGTGGTT+TGG + Chr3:40510422-40510441 MsG0380013547.01.T01:intron 30.0%
!!! GGAACTTGATTTTAGAGTTA+TGG - Chr3:40512514-40512533 None:intergenic 30.0%
!!! TTTTTTGAGAAAGCTGAAGA+AGG + Chr3:40510014-40510033 MsG0380013547.01.T01:CDS 30.0%
AACATCTGCGATGAATAAGA+TGG + Chr3:40510226-40510245 MsG0380013547.01.T01:intron 35.0%
AAGAAGGTTAAGAAGAGCAA+TGG + Chr3:40510030-40510049 MsG0380013547.01.T01:CDS 35.0%
AAGAGAACGAAACAGAGTAA+TGG + Chr3:40510935-40510954 MsG0380013547.01.T01:intron 35.0%
ACAATAGGATTGCTATGTAG+TGG + Chr3:40510362-40510381 MsG0380013547.01.T01:intron 35.0%
ACGAAACAGAGTAATGGTTA+TGG + Chr3:40510941-40510960 MsG0380013547.01.T01:intron 35.0%
AGAAGGTTAAGAAGAGCAAT+GGG + Chr3:40510031-40510050 MsG0380013547.01.T01:CDS 35.0%
AGATCTATAGGATGAAGTTG+TGG + Chr3:40509674-40509693 MsG0380013547.01.T01:CDS 35.0%
ATTGAAAACACGTTTAGGTG+AGG + Chr3:40511060-40511079 MsG0380013547.01.T01:intron 35.0%
ATTTAGGAGTAAGTCACTGT+TGG + Chr3:40511998-40512017 MsG0380013547.01.T01:intron 35.0%
CATTGGAGAGTTTGTAATGA+TGG + Chr3:40509553-40509572 MsG0380013547.01.T01:CDS 35.0%
CCAACCAAGATTAAGAACTA+CGG + Chr3:40512290-40512309 MsG0380013547.01.T01:CDS 35.0%
CGAAATACATACCTCATTGA+TGG - Chr3:40510067-40510086 None:intergenic 35.0%
CTTGTACATGTTGTGATATC+CGG - Chr3:40512342-40512361 None:intergenic 35.0%
GAAACAACATGCCATTACAA+AGG + Chr3:40510875-40510894 MsG0380013547.01.T01:intron 35.0%
GAGAAAACGAAACAGAGTTA+TGG + Chr3:40510963-40510982 MsG0380013547.01.T01:intron 35.0%
GATCTATAGGATGAAGTTGT+GGG + Chr3:40509675-40509694 MsG0380013547.01.T01:CDS 35.0%
GATTTACCAGAACTTGGATT+TGG - Chr3:40509719-40509738 None:intergenic 35.0%
GGAAAAAACGATTCAGAACA+AGG + Chr3:40511318-40511337 MsG0380013547.01.T01:intron 35.0%
TATATTGTTAGGGGTCATTG+AGG + Chr3:40511898-40511917 MsG0380013547.01.T01:intron 35.0%
TCAGTACCAAAGAATACAGA+AGG - Chr3:40511665-40511684 None:intergenic 35.0%
TCCTAACATGCTGGTATTAA+GGG - Chr3:40511722-40511741 None:intergenic 35.0%
TTCTGTATTCTTTGGTACTG+AGG + Chr3:40511664-40511683 MsG0380013547.01.T01:intron 35.0%
TTGAAAACACGTTTAGGTGA+GGG + Chr3:40511061-40511080 MsG0380013547.01.T01:intron 35.0%
TTTAGGAGTAAGTCACTGTT+GGG + Chr3:40511999-40512018 MsG0380013547.01.T01:intron 35.0%
TTTGCAAATGTTGCTCGTAA+TGG + Chr3:40510171-40510190 MsG0380013547.01.T01:intron 35.0%
! ATGGAACATGATAGAGTACT+TGG + Chr3:40511639-40511658 MsG0380013547.01.T01:intron 35.0%
! GATTGCTATGTAGTGGAATT+TGG + Chr3:40510369-40510388 MsG0380013547.01.T01:intron 35.0%
! GCTTGATTCGTTATAAGCAT+AGG + Chr3:40512657-40512676 MsG0380013547.01.T01:intron 35.0%
! TTGCATTGCTCTTTTTGGAT+GGG + Chr3:40509883-40509902 MsG0380013547.01.T01:intron 35.0%
! TTTGCATTGCTCTTTTTGGA+TGG + Chr3:40509882-40509901 MsG0380013547.01.T01:intron 35.0%
!! CGTTCTAGTTTGTCTAATAG+TGG - Chr3:40512175-40512194 None:intergenic 35.0%
!! CTCTAAAATCAAGTTCCCAT+TGG + Chr3:40512517-40512536 MsG0380013547.01.T01:CDS 35.0%
!! GTAATGGCATGTTGTTTCTA+TGG - Chr3:40510873-40510892 None:intergenic 35.0%
!! TCCTGACTACATTGGTTTAA+AGG - Chr3:40510581-40510600 None:intergenic 35.0%
!! TTGTCTAATAGTGGGTATAG+CGG - Chr3:40512166-40512185 None:intergenic 35.0%
!! TTTAGCTCACTTCCTTTTTC+CGG - Chr3:40511032-40511051 None:intergenic 35.0%
!!! GATGGCAAAATTTTAACTGG+TGG + Chr3:40510244-40510263 MsG0380013547.01.T01:intron 35.0%
!!! TTTTTTAACGTTCGTGCATC+AGG + Chr3:40511272-40511291 MsG0380013547.01.T01:intron 35.0%
!!! TTTTTTCCATGTTTGTTGGC+AGG - Chr3:40511306-40511325 None:intergenic 35.0%
AATTCGCCGGAAAAGATTCA+TGG + Chr3:40511106-40511125 MsG0380013547.01.T01:intron 40.0%
ACATGTTGTGATATCCGGTT+CGG - Chr3:40512337-40512356 None:intergenic 40.0%
ACGAAACAGAGTTATGGGTA+TGG + Chr3:40510969-40510988 MsG0380013547.01.T01:intron 40.0%
CCCAGCTAATCTTTGCAAAA+GGG + Chr3:40512472-40512491 MsG0380013547.01.T01:CDS 40.0%
CCGTAGTTCTTAATCTTGGT+TGG - Chr3:40512293-40512312 None:intergenic 40.0%
CCTAACATGCTGGTATTAAG+GGG - Chr3:40511721-40511740 None:intergenic 40.0%
CGGATATCACAACATGTACA+AGG + Chr3:40512340-40512359 MsG0380013547.01.T01:CDS 40.0%
GAAGCTCAAGACAACATACA+AGG + Chr3:40512568-40512587 MsG0380013547.01.T01:CDS 40.0%
GCATAGGAAGAACTTAGAGA+AGG + Chr3:40512673-40512692 MsG0380013547.01.T01:three_prime_UTR 40.0%
GCCTTTAAACCAATGTAGTC+AGG + Chr3:40510577-40510596 MsG0380013547.01.T01:intron 40.0%
GGAAAAAGGAAGTGAGCTAA+AGG + Chr3:40511031-40511050 MsG0380013547.01.T01:intron 40.0%
GGAGGAAGATTTAAGCACAA+AGG + Chr3:40511795-40511814 MsG0380013547.01.T01:intron 40.0%
GTATTTGGTTGAAAACAGGC+CGG + Chr3:40511010-40511029 MsG0380013547.01.T01:intron 40.0%
GTCCTAACATGCTGGTATTA+AGG - Chr3:40511723-40511742 None:intergenic 40.0%
GTTCGTAAGAACCCACTTAA+GGG + Chr3:40510663-40510682 MsG0380013547.01.T01:intron 40.0%
GTTGCTCGTAATGGTAAGAT+AGG + Chr3:40510180-40510199 MsG0380013547.01.T01:intron 40.0%
TCCCAGCTAATCTTTGCAAA+AGG + Chr3:40512471-40512490 MsG0380013547.01.T01:CDS 40.0%
TTGCTCATCTTGGATTCGTT+CGG + Chr3:40512761-40512780 MsG0380013547.01.T01:three_prime_UTR 40.0%
! ACTTGGCCTTCTGTATTCTT+TGG + Chr3:40511656-40511675 MsG0380013547.01.T01:intron 40.0%
! GTGTTTAAAGCAAGGTAGTC+AGG - Chr3:40511407-40511426 None:intergenic 40.0%
! TCCCTTTTGCAAAGATTAGC+TGG - Chr3:40512476-40512495 None:intergenic 40.0%
! TTCTTTGGTACTGAGGTATC+AGG + Chr3:40511671-40511690 MsG0380013547.01.T01:intron 40.0%
!! AACTGTAGAACTTGTTAGGG+AGG + Chr3:40511777-40511796 MsG0380013547.01.T01:intron 40.0%
!! CCCTTTTGCAAAGATTAGCT+GGG - Chr3:40512475-40512494 None:intergenic 40.0%
!! TAGCCCAAACCAATTTTGAC+AGG + Chr3:40511238-40511257 MsG0380013547.01.T01:intron 40.0%
AACGATTCAGAACAAGGTCG+AGG + Chr3:40511324-40511343 MsG0380013547.01.T01:intron 45.0%
AAGACTTGTAGAAGGGCAGA+AGG + Chr3:40510455-40510474 MsG0380013547.01.T01:intron 45.0%
ACCAGCATGTTAGGACTAGA+CGG + Chr3:40511727-40511746 MsG0380013547.01.T01:intron 45.0%
ACCTAAACCTAGCACACGAA+CGG - Chr3:40511135-40511154 None:intergenic 45.0%
ACGTGGAGAAGACTTGTAGA+AGG + Chr3:40510447-40510466 MsG0380013547.01.T01:intron 45.0%
AGTTCCTACGTAGGTTCGAT+TGG + Chr3:40510604-40510623 MsG0380013547.01.T01:intron 45.0%
ATCGAAGTTTGGACATAGGG+TGG + Chr3:40511929-40511948 MsG0380013547.01.T01:intron 45.0%
ATCTTGGATTCGTTCGGAGT+TGG + Chr3:40512767-40512786 MsG0380013547.01.T01:three_prime_UTR 45.0%
CACCATTTAGTGTAGTGTCG+CGG - Chr3:40512370-40512389 None:intergenic 45.0%
CCCCTTAATACCAGCATGTT+AGG + Chr3:40511718-40511737 MsG0380013547.01.T01:intron 45.0%
CGTGGAGAAGACTTGTAGAA+GGG + Chr3:40510448-40510467 MsG0380013547.01.T01:intron 45.0%
CTTAAACATCTGCGATCCAG+AGG - Chr3:40511871-40511890 None:intergenic 45.0%
CTTGTCAGGAATTCGACTCA+GGG + Chr3:40511543-40511562 MsG0380013547.01.T01:intron 45.0%
GAACTCGTTCCTGACTACAT+TGG - Chr3:40510589-40510608 None:intergenic 45.0%
GAATCAGTATCACCAGTACC+AGG + Chr3:40509609-40509628 MsG0380013547.01.T01:CDS 45.0%
GCTACAACGCTATTGCATAG+AGG + Chr3:40510280-40510299 MsG0380013547.01.T01:intron 45.0%
GGATGTTCATCCTTCTCAGT+AGG - Chr3:40509652-40509671 None:intergenic 45.0%
GGTAGGGTCAAAAGATAACC+CGG - Chr3:40511209-40511228 None:intergenic 45.0%
GGTTCGTAAGAACCCACTTA+AGG + Chr3:40510662-40510681 MsG0380013547.01.T01:intron 45.0%
GTATGTTGTCTTGAGCTTCC+TGG - Chr3:40512567-40512586 None:intergenic 45.0%
GTGTAGGAACGTAAACACGA+GGG + Chr3:40510630-40510649 MsG0380013547.01.T01:intron 45.0%
GTTCTCAGCCTCAAAGTTCT+AGG + Chr3:40512207-40512226 MsG0380013547.01.T01:intron 45.0%
GTTGAAAACAGGCCGGAAAA+AGG + Chr3:40511017-40511036 MsG0380013547.01.T01:intron 45.0%
TAAACACGAGGGACGTAACA+CGG + Chr3:40510641-40510660 MsG0380013547.01.T01:intron 45.0%
TACCGCGACACTACACTAAA+TGG + Chr3:40512365-40512384 MsG0380013547.01.T01:CDS 45.0%
TATCACCAGTACCAGGTTGT+GGG + Chr3:40509616-40509635 MsG0380013547.01.T01:CDS 45.0%
TCGTGTTTACGTTCCTACAC+CGG - Chr3:40510630-40510649 None:intergenic 45.0%
TCTTGTCAGGAATTCGACTC+AGG + Chr3:40511542-40511561 MsG0380013547.01.T01:intron 45.0%
TGGGCCTGTCAAAATTGGTT+TGG - Chr3:40511245-40511264 None:intergenic 45.0%
TTGTCTTGAGCTTCCTGGTT+GGG - Chr3:40512562-40512581 None:intergenic 45.0%
! ACTAAGGTGGTTTGGATACG+TGG + Chr3:40510430-40510449 MsG0380013547.01.T01:intron 45.0%
! CAAGTTGGGCCTGTCAAAAT+TGG - Chr3:40511250-40511269 None:intergenic 45.0%
! GCAAAGATTAGCTGGGATTG+TGG - Chr3:40512468-40512487 None:intergenic 45.0%
! GGGCCTGTCAAAATTGGTTT+GGG - Chr3:40511244-40511263 None:intergenic 45.0%
! GGTTATCTTTTGACCCTACC+CGG + Chr3:40511209-40511228 MsG0380013547.01.T01:intron 45.0%
! GTCTTGATGATCTGGATGCA+TGG - Chr3:40512443-40512462 None:intergenic 45.0%
! TTGTGGCAGTCTTGATGATC+TGG - Chr3:40512451-40512470 None:intergenic 45.0%
!! AATAGTGGGTATAGCGGTAG+TGG - Chr3:40512160-40512179 None:intergenic 45.0%
AACAAGGTCGAGGCACGATT+GGG + Chr3:40511334-40511353 MsG0380013547.01.T01:intron 50.0%
ACCGTTCGTGTGCTAGGTTT+AGG + Chr3:40511131-40511150 MsG0380013547.01.T01:intron 50.0%
ATCACCAGTACCAGGTTGTG+GGG + Chr3:40509617-40509636 MsG0380013547.01.T01:CDS 50.0%
CTCGTTCCTGCCAACAAACA+TGG + Chr3:40511297-40511316 MsG0380013547.01.T01:intron 50.0%
GAGAGCTCTTCCTACTGAGA+AGG + Chr3:40509639-40509658 MsG0380013547.01.T01:CDS 50.0%
GGATTTGGCACGCACTTCAT+TGG - Chr3:40509704-40509723 None:intergenic 50.0%
GGTGTAGGAACGTAAACACG+AGG + Chr3:40510629-40510648 MsG0380013547.01.T01:intron 50.0%
GGTTAAGAAGAGCAATGGGC+AGG + Chr3:40510035-40510054 MsG0380013547.01.T01:CDS 50.0%
GTATCACCAGTACCAGGTTG+TGG + Chr3:40509615-40509634 MsG0380013547.01.T01:CDS 50.0%
GTTGTCTTGAGCTTCCTGGT+TGG - Chr3:40512563-40512582 None:intergenic 50.0%
TAAACCTAGCACACGAACGG+TGG - Chr3:40511132-40511151 None:intergenic 50.0%
TCAGGAACGAGTTCCTACGT+AGG + Chr3:40510595-40510614 MsG0380013547.01.T01:intron 50.0%
TCGTGTGCTAGGTTTAGGTG+AGG + Chr3:40511136-40511155 MsG0380013547.01.T01:intron 50.0%
TGAGGGTAGAGAGAGAACGA+CGG + Chr3:40511078-40511097 MsG0380013547.01.T01:intron 50.0%
TGCGTGCCAAATCCAAGTTC+TGG + Chr3:40509710-40509729 MsG0380013547.01.T01:CDS 50.0%
TGGCTTCACGTCATAGAGTC+AGG + Chr3:40512414-40512433 MsG0380013547.01.T01:CDS 50.0%
TGTCTTGAGCTTCCTGGTTG+GGG - Chr3:40512561-40512580 None:intergenic 50.0%
TTTGGCACGCACTTCATTGG+TGG - Chr3:40509701-40509720 None:intergenic 50.0%
! CGGTGGCCATGAATCTTTTC+CGG - Chr3:40511115-40511134 None:intergenic 50.0%
! TCTTTTGACCCTACCCGGTT+CGG + Chr3:40511214-40511233 MsG0380013547.01.T01:intron 50.0%
AACGACGGCGAGAAATTCGC+CGG + Chr3:40511093-40511112 MsG0380013547.01.T01:intron 55.0%
AACGGACGATCCTACGTGCT+GGG + Chr3:40511374-40511393 MsG0380013547.01.T01:intron 55.0%
AGAAGATTAGGCCCCCAACC+AGG + Chr3:40512546-40512565 MsG0380013547.01.T01:CDS 55.0%
CCTACGTAGGTTCGATTGGC+CGG + Chr3:40510608-40510627 MsG0380013547.01.T01:intron 55.0%
CTTCGATACCAGAGCCGAAC+CGG + Chr3:40512320-40512339 MsG0380013547.01.T01:CDS 55.0%
GAACAAGGTCGAGGCACGAT+TGG + Chr3:40511333-40511352 MsG0380013547.01.T01:intron 55.0%
GCAGGTGCTTGCCATCAATG+AGG + Chr3:40510053-40510072 MsG0380013547.01.T01:CDS 55.0%
GCATGTTAGGACTAGACGGC+TGG + Chr3:40511731-40511750 MsG0380013547.01.T01:intron 55.0%
GCCGTCTAGTCCTAACATGC+TGG - Chr3:40511731-40511750 None:intergenic 55.0%
GTCTTGAGCTTCCTGGTTGG+GGG - Chr3:40512560-40512579 None:intergenic 55.0%
! ATTGGGTGTGGGAAGCACGT+AGG + Chr3:40511351-40511370 MsG0380013547.01.T01:intron 55.0%
! CTTTTGACCCTACCCGGTTC+GGG + Chr3:40511215-40511234 MsG0380013547.01.T01:intron 55.0%
! GTGTGGGAAGCACGTAGGAA+CGG + Chr3:40511356-40511375 MsG0380013547.01.T01:intron 55.0%
! TAGGTTCGATTGGCCGGTGT+AGG + Chr3:40510614-40510633 MsG0380013547.01.T01:intron 55.0%
!! TGTGATATCCGGTTCGGCTC+TGG - Chr3:40512331-40512350 None:intergenic 55.0%
!! TTGGTTTGGGCTACCCGAAC+CGG - Chr3:40511231-40511250 None:intergenic 55.0%
ATGGCCACCGTTCGTGTGCT+AGG + Chr3:40511125-40511144 MsG0380013547.01.T01:intron 60.0%
CCGGCCAATCGAACCTACGT+AGG - Chr3:40510611-40510630 None:intergenic 60.0%
CTCTCCCCACAACCTGGTAC+TGG - Chr3:40509624-40509643 None:intergenic 60.0%
GAACGGACGATCCTACGTGC+TGG + Chr3:40511373-40511392 MsG0380013547.01.T01:intron 60.0%
GAAGAGCTCTCCCCACAACC+TGG - Chr3:40509630-40509649 None:intergenic 60.0%
GTCGAGGCACGATTGGGTGT+GGG + Chr3:40511340-40511359 MsG0380013547.01.T01:intron 60.0%
! TGGTTTGGGCTACCCGAACC+GGG - Chr3:40511230-40511249 None:intergenic 60.0%
AGGCACGAGTCCCAGCACGT+AGG - Chr3:40511387-40511406 None:intergenic 65.0%
GGTCGAGGCACGATTGGGTG+TGG + Chr3:40511339-40511358 MsG0380013547.01.T01:intron 65.0%
TGGGCTACCCGAACCGGGTA+GGG - Chr3:40511225-40511244 None:intergenic 65.0%
TTGGGCTACCCGAACCGGGT+AGG - Chr3:40511226-40511245 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 40509550 40512831 40509550 ID=MsG0380013547.01;Name=MsG0380013547.01
Chr3 mRNA 40509550 40512831 40509550 ID=MsG0380013547.01.T01;Parent=MsG0380013547.01;Name=MsG0380013547.01.T01;_AED=0.47;_eAED=0.50;_QI=0|1|0.75|1|0.66|0.5|4|194|195
Chr3 exon 40509550 40509731 40509550 ID=MsG0380013547.01.T01:exon:8655;Parent=MsG0380013547.01.T01
Chr3 exon 40510011 40510074 40510011 ID=MsG0380013547.01.T01:exon:8656;Parent=MsG0380013547.01.T01
Chr3 exon 40512275 40512636 40512275 ID=MsG0380013547.01.T01:exon:8657;Parent=MsG0380013547.01.T01
Chr3 exon 40512658 40512831 40512658 ID=MsG0380013547.01.T01:exon:8658;Parent=MsG0380013547.01.T01
Chr3 CDS 40509550 40509731 40509550 ID=MsG0380013547.01.T01:cds;Parent=MsG0380013547.01.T01
Chr3 CDS 40510011 40510074 40510011 ID=MsG0380013547.01.T01:cds;Parent=MsG0380013547.01.T01
Chr3 CDS 40512275 40512616 40512275 ID=MsG0380013547.01.T01:cds;Parent=MsG0380013547.01.T01
Chr3 three_prime_UTR 40512617 40512636 40512617 ID=MsG0380013547.01.T01:three_prime_utr;Parent=MsG0380013547.01.T01
Chr3 three_prime_UTR 40512658 40512831 40512658 ID=MsG0380013547.01.T01:three_prime_utr;Parent=MsG0380013547.01.T01
Gene Sequence

>MsG0380013547.01.T01

ATGCATTGGAGAGTTTGTAATGATGGGTATTTCGTTTTTTTGTTTGTTGTTGTGGTGATGAATCAGTATCACCAGTACCAGGTTGTGGGGAGAGCTCTTCCTACTGAGAAGGATGAACATCCTAAGATCTATAGGATGAAGTTGTGGGCCACCAATGAAGTGCGTGCCAAATCCAAGTTCTGGTATTTTTTGAGAAAGCTGAAGAAGGTTAAGAAGAGCAATGGGCAGGTGCTTGCCATCAATGAGATTTTTGAGAAAAATCCAACCAAGATTAAGAACTACGGAATTTGGCTTCGATACCAGAGCCGAACCGGATATCACAACATGTACAAGGAATACCGCGACACTACACTAAATGGTGCTGTTGAATATATGTACAATGAAATGGCTTCACGTCATAGAGTCAGGCATCCATGCATCCAGATCATCAAGACTGCCACAATCCCAGCTAATCTTTGCAAAAGGGAAAGCAGCAAGCAGTTCCATAACTCTAAAATCAAGTTCCCATTGGTGTTTAAGAAGATTAGGCCCCCAACCAGGAAGCTCAAGACAACATACAAGGCAACAAAACCCAACATGTTTATGTAA
Protein sequence

>MsG0380013547.01.T01

MHWRVCNDGYFVFLFVVVVMNQYHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEYMYNEMASRHRVRHPCIQIIKTATIPANLCKRESSKQFHNSKIKFPLVFKKIRPPTRKLKTTYKATKPNMFM*