Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029702.01.T01 | NP_001365661.1 | 100 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.25E-129 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029702.01.T01 | Q9ATF5 | 89.888 | 178 | 18 | 0 | 1 | 178 | 1 | 178 | 4.23E-119 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029702.01.T01 | B7FJC3 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 1.55e-129 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048933.01 | MsG0580029702.01 | 0.834017 | 3.820945e-56 | 4.477395e-53 |
| MsG0180000118.01 | MsG0580029702.01 | 0.838172 | 3.366669e-57 | 4.472468e-54 |
| MsG0180000227.01 | MsG0580029702.01 | 0.819110 | 1.379046e-52 | 1.051622e-49 |
| MsG0180001488.01 | MsG0580029702.01 | 0.811541 | 6.648794e-51 | 4.126935e-48 |
| MsG0180002738.01 | MsG0580029702.01 | 0.809181 | 2.148271e-50 | 1.252705e-47 |
| MsG0180003115.01 | MsG0580029702.01 | 0.836287 | 1.022306e-56 | 1.282675e-53 |
| MsG0180003313.01 | MsG0580029702.01 | 0.863127 | 3.106609e-64 | 9.316875e-61 |
| MsG0180003897.01 | MsG0580029702.01 | 0.845717 | 3.413032e-59 | 5.739712e-56 |
| MsG0180004607.01 | MsG0580029702.01 | 0.833630 | 4.777186e-56 | 5.532918e-53 |
| MsG0180004622.01 | MsG0580029702.01 | 0.823452 | 1.374813e-53 | 1.184170e-50 |
| MsG0180004829.01 | MsG0580029702.01 | 0.849777 | 2.600636e-60 | 4.984687e-57 |
| MsG0180005361.01 | MsG0580029702.01 | 0.845491 | 3.928882e-59 | 6.558451e-56 |
| MsG0180005366.01 | MsG0580029702.01 | 0.854919 | 8.928011e-62 | 2.025857e-58 |
| MsG0180005573.01 | MsG0580029702.01 | 0.868794 | 5.011485e-66 | 1.836470e-62 |
| MsG0280010995.01 | MsG0580029702.01 | 0.816798 | 4.592217e-52 | 3.286078e-49 |
| MsG0280011060.01 | MsG0580029702.01 | 0.875962 | 2.036342e-68 | 9.699365e-65 |
| MsG0280011234.01 | MsG0580029702.01 | 0.903290 | 4.041163e-79 | 5.945494e-75 |
| MsG0280011308.01 | MsG0580029702.01 | 0.827098 | 1.887198e-54 | 1.803868e-51 |
| MsG0380011643.01 | MsG0580029702.01 | 0.818498 | 1.899315e-52 | 1.424107e-49 |
| MsG0480019165.01 | MsG0580029702.01 | 0.853757 | 1.934990e-61 | 4.225344e-58 |
| MsG0480019632.01 | MsG0580029702.01 | 0.905505 | 3.997123e-80 | 6.485952e-76 |
| MsG0480020895.01 | MsG0580029702.01 | 0.884358 | 2.053246e-71 | 1.350438e-67 |
| MsG0480020911.01 | MsG0580029702.01 | 0.829303 | 5.550318e-55 | 5.659317e-52 |
| MsG0480021159.01 | MsG0580029702.01 | 0.840540 | 8.174951e-58 | 1.168170e-54 |
| MsG0480021279.01 | MsG0580029702.01 | 0.814835 | 1.258571e-51 | 8.535489e-49 |
| MsG0480021417.01 | MsG0580029702.01 | 0.856072 | 4.119417e-62 | 9.712670e-59 |
| MsG0480022363.01 | MsG0580029702.01 | 0.876503 | 1.326316e-68 | 6.446641e-65 |
| MsG0480022789.01 | MsG0580029702.01 | 0.849131 | 3.937148e-60 | 7.391319e-57 |
| MsG0480023380.01 | MsG0580029702.01 | 0.815661 | 8.246567e-52 | 5.720569e-49 |
| MsG0480023467.01 | MsG0580029702.01 | 0.900125 | 1.001372e-77 | 1.276793e-73 |
| MsG0480023770.01 | MsG0580029702.01 | 0.824257 | 8.904317e-54 | 7.845856e-51 |
| MsG0480023774.01 | MsG0580029702.01 | 0.810817 | 9.545222e-51 | 5.812281e-48 |
| MsG0480023970.01 | MsG0580029702.01 | 0.900765 | 5.279356e-78 | 6.921322e-74 |
| MsG0580024369.01 | MsG0580029702.01 | 0.898907 | 3.346901e-77 | 4.039978e-73 |
| MsG0580024481.01 | MsG0580029702.01 | 0.808492 | 3.015953e-50 | 1.726908e-47 |
| MsG0580024738.01 | MsG0580029702.01 | 0.822260 | 2.604746e-53 | 2.169186e-50 |
| MsG0580025073.01 | MsG0580029702.01 | 0.863049 | 3.284145e-64 | 9.822187e-61 |
| MsG0580025348.01 | MsG0580029702.01 | 0.801555 | 8.520592e-49 | 4.081059e-46 |
| MsG0580025750.01 | MsG0580029702.01 | 0.868731 | 5.251137e-66 | 1.920120e-62 |
| MsG0380015494.01 | MsG0580029702.01 | 0.929527 | 6.115130e-93 | 3.433174e-88 |
| MsG0380016577.01 | MsG0580029702.01 | 0.841121 | 5.758384e-58 | 8.377004e-55 |
| MsG0380016622.01 | MsG0580029702.01 | 0.894420 | 2.508744e-75 | 2.491873e-71 |
| MsG0380016678.01 | MsG0580029702.01 | 0.876039 | 1.916140e-68 | 9.151580e-65 |
| MsG0380016733.01 | MsG0580029702.01 | 0.840122 | 1.051541e-57 | 1.483325e-54 |
| MsG0480018084.01 | MsG0580029702.01 | 0.818099 | 2.338790e-52 | 1.734291e-49 |
| MsG0580028561.01 | MsG0580029702.01 | 0.864689 | 1.014890e-64 | 3.214871e-61 |
| MsG0580029132.01 | MsG0580029702.01 | 0.841213 | 5.446718e-58 | 7.946445e-55 |
| MsG0580029284.01 | MsG0580029702.01 | 0.871336 | 7.385721e-67 | 2.968504e-63 |
| MsG0580029702.01 | MsG0580029703.01 | 0.868115 | 8.299648e-66 | 2.967819e-62 |
| MsG0580029702.01 | MsG0580030073.01 | 0.906565 | 1.295925e-80 | 2.207813e-76 |
| MsG0580029702.01 | MsG0680031763.01 | 0.878930 | 1.885067e-69 | 1.002527e-65 |
| MsG0580029702.01 | MsG0680035611.01 | 0.820074 | 8.311604e-53 | 6.511131e-50 |
| MsG0580029702.01 | MsG0780037097.01 | 0.824888 | 6.324454e-54 | 5.675530e-51 |
| MsG0580029702.01 | MsG0780038383.01 | 0.828657 | 7.958301e-55 | 7.960813e-52 |
| MsG0580029702.01 | MsG0780038587.01 | 0.800323 | 1.520931e-48 | 7.061469e-46 |
| MsG0580029702.01 | MsG0780039271.01 | 0.841621 | 4.252974e-58 | 6.285028e-55 |
| MsG0580029702.01 | MsG0780040062.01 | 0.804542 | 2.054602e-49 | 1.062171e-46 |
| MsG0580029702.01 | MsG0780040782.01 | 0.814454 | 1.527897e-51 | 1.025660e-48 |
| MsG0580029702.01 | MsG0780041058.01 | 0.905084 | 6.237412e-80 | 9.929200e-76 |
| MsG0580029702.01 | MsG0780041147.01 | 0.883076 | 6.092879e-71 | 3.806524e-67 |
| MsG0580029702.01 | MsG0780041332.01 | 0.833861 | 4.180742e-56 | 4.876464e-53 |
| MsG0580029702.01 | MsG0780041461.01 | 0.833875 | 4.147516e-56 | 4.839784e-53 |
| MsG0580029702.01 | MsG0780041522.01 | 0.829572 | 4.776877e-55 | 4.907875e-52 |
| MsG0580029702.01 | MsG0880042125.01 | 0.862520 | 4.781124e-64 | 1.404271e-60 |
| MsG0580029702.01 | MsG0880042209.01 | 0.835266 | 1.855054e-56 | 2.256931e-53 |
| MsG0580029702.01 | MsG0880042517.01 | 0.875442 | 3.071064e-68 | 1.433924e-64 |
| MsG0580029702.01 | MsG0880043517.01 | 0.924957 | 3.514851e-90 | 1.527515e-85 |
| MsG0580029702.01 | MsG0880043770.01 | 0.855996 | 4.334638e-62 | 1.019494e-58 |
| MsG0580029702.01 | MsG0880044003.01 | 0.815298 | 9.932907e-52 | 6.821809e-49 |
| MsG0580029702.01 | MsG0880046220.01 | 0.823471 | 1.360901e-53 | 1.172824e-50 |
| MsG0580029702.01 | MsG0880046444.01 | 0.818768 | 1.649864e-52 | 1.246300e-49 |
| MsG0580029702.01 | MsG0880046879.01 | 0.841383 | 4.913651e-58 | 7.207570e-55 |
| MsG0580029702.01 | MsG0880047082.01 | 0.867330 | 1.481787e-65 | 5.153919e-62 |
| MsG0280006629.01 | MsG0580029702.01 | 0.839903 | 1.199415e-57 | 1.680344e-54 |
| MsG0280006664.01 | MsG0580029702.01 | 0.828730 | 7.641155e-55 | 7.659074e-52 |
| MsG0280006741.01 | MsG0580029702.01 | 0.837619 | 4.669817e-57 | 6.100418e-54 |
| MsG0280006747.01 | MsG0580029702.01 | 0.802871 | 4.566951e-49 | 2.261950e-46 |
| MsG0280006819.01 | MsG0580029702.01 | 0.855463 | 6.201837e-62 | 1.433139e-58 |
| MsG0280006836.01 | MsG0580029702.01 | 0.846147 | 2.606600e-59 | 4.444028e-56 |
| MsG0280007055.01 | MsG0580029702.01 | 0.829839 | 4.112439e-55 | 4.259268e-52 |
| MsG0280007643.01 | MsG0580029702.01 | 0.892995 | 9.483203e-75 | 8.872020e-71 |
| MsG0280007995.01 | MsG0580029702.01 | 0.859198 | 4.883041e-63 | 1.279003e-59 |
| MsG0280010495.01 | MsG0580029702.01 | 0.866833 | 2.135776e-65 | 7.300425e-62 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580029702.01 | MsG0480022929.01 | PPI |
| MsG0380013547.01 | MsG0580029702.01 | PPI |
| MsG0580029703.01 | MsG0580029702.01 | PPI |
| MsG0280009544.01 | MsG0580029702.01 | PPI |
| MsG0080048497.01 | MsG0580029702.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029702.01.T01 | MTR_5g091135 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.94e-133 | 370 |
| MsG0580029702.01.T01 | MTR_5g091120 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.94e-133 | 370 |
| MsG0580029702.01.T01 | MTR_2g098000 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.94e-133 | 370 |
| MsG0580029702.01.T01 | MTR_3g046320 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.39e-125 | 350 |
| MsG0580029702.01.T01 | MTR_3g046320 | 95.402 | 174 | 8 | 0 | 5 | 178 | 3 | 176 | 3.20e-124 | 347 |
| MsG0580029702.01.T01 | MTR_2g019720 | 62.353 | 85 | 32 | 0 | 92 | 176 | 1 | 85 | 1.07e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029702.01.T01 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 5 | 178 | 3.01e-119 | 335 |
| MsG0580029702.01.T01 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 44 | 217 | 3.24e-119 | 336 |
| MsG0580029702.01.T01 | AT1G29965 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 1.24e-117 | 330 |
| MsG0580029702.01.T01 | AT3G14600 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 4.19e-117 | 329 |
| MsG0580029702.01.T01 | AT1G29970 | 89.017 | 173 | 19 | 0 | 6 | 178 | 140 | 312 | 1.08e-114 | 328 |
Find 58 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAAACTTACCAGAATT+TGG | 0.159052 | 5:-100961889 | None:intergenic |
| CACCAGAGGGAACTTGATTT+TGG | 0.187302 | 5:-100963705 | None:intergenic |
| CATAAACAGGTTGGGCTTCT+TGG | 0.201042 | 5:-100963777 | None:intergenic |
| AGATTAAGAACTATGGAATT+TGG | 0.243479 | 5:+100963483 | MsG0580029702.01.T01:CDS |
| GAAAAGTAATGGACAAGTTT+TGG | 0.246012 | 5:+100962037 | MsG0580029702.01.T01:CDS |
| GTTGGGCTTCTTGGCTTTGT+AGG | 0.248408 | 5:-100963768 | None:intergenic |
| CACATTTCGCTTCTCATATT+GGG | 0.263107 | 5:+100963813 | MsG0580029702.01.T01:three_prime_UTR |
| TCACATTTCGCTTCTCATAT+TGG | 0.265029 | 5:+100963812 | MsG0580029702.01.T01:three_prime_UTR |
| AGATTTATCGCATGAAGCTT+TGG | 0.341025 | 5:+100961841 | MsG0580029702.01.T01:CDS |
| AACTTACCAGAATTTGGATT+TGG | 0.348831 | 5:-100961883 | None:intergenic |
| ACGAGATGGCATCTCGTCAT+AGG | 0.358917 | 5:+100963594 | MsG0580029702.01.T01:CDS |
| CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 5:+100963476 | MsG0580029702.01.T01:CDS |
| GATTTATCGCATGAAGCTTT+GGG | 0.367321 | 5:+100961842 | MsG0580029702.01.T01:CDS |
| TTCGTGCCAAATCCAAATTC+TGG | 0.381119 | 5:+100961877 | MsG0580029702.01.T01:CDS |
| AAGCTTCATGCGATAAATCT+TGG | 0.383045 | 5:-100961838 | None:intergenic |
| TCCCGGCTAATCTGTGCAAA+AGG | 0.396699 | 5:+100963657 | MsG0580029702.01.T01:CDS |
| AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 5:-100963480 | None:intergenic |
| ATTCACTGAATCACATAAAC+AGG | 0.404006 | 5:-100963790 | None:intergenic |
| AGAAGATAAAACAAAATTCT+CGG | 0.437500 | 5:-100963944 | None:intergenic |
| TACCGTGATACTACTCTAAA+CGG | 0.441043 | 5:+100963551 | MsG0580029702.01.T01:CDS |
| GGATTTGGCACGAACCTCAT+TGG | 0.442665 | 5:-100961868 | None:intergenic |
| AGTCTTAATGATTTGAATGC+AGG | 0.447032 | 5:-100963627 | None:intergenic |
| CTCTGGTGTACAAGAAGATT+AGG | 0.461451 | 5:+100963720 | MsG0580029702.01.T01:CDS |
| ACTACAATCAGCGGCGTTCA+CGG | 0.466844 | 5:+100961639 | MsG0580029702.01.T01:five_prime_UTR |
| AGCTTCATGCGATAAATCTT+GGG | 0.476384 | 5:-100961837 | None:intergenic |
| CTGAATCACATAAACAGGTT+GGG | 0.486125 | 5:-100963785 | None:intergenic |
| CTCTTCCAACAACCTGGTAC+TGG | 0.489846 | 5:-100961788 | None:intergenic |
| TTTCTTGAGGAAGTTGAAGA+AGG | 0.490067 | 5:+100962010 | MsG0580029702.01.T01:CDS |
| TGGCATCTCGTCATAGGGTC+AGG | 0.497058 | 5:+100963600 | MsG0580029702.01.T01:CDS |
| TTTCACCAGTACCAGGTTGT+TGG | 0.499494 | 5:+100961783 | MsG0580029702.01.T01:CDS |
| TTGCGTTATCAGAGTCGTAC+TGG | 0.505845 | 5:+100963506 | MsG0580029702.01.T01:CDS |
| TAGCGATCACTTTATTTCGA+AGG | 0.517130 | 5:+100964027 | MsG0580029702.01.T01:three_prime_UTR |
| AAGAAGGTTAAGAAAAGTAA+TGG | 0.518066 | 5:+100962026 | MsG0580029702.01.T01:CDS |
| CGATCACTTTATTTCGAAGG+AGG | 0.532163 | 5:+100964030 | MsG0580029702.01.T01:three_prime_UTR |
| CCCGGCTAATCTGTGCAAAA+GGG | 0.540578 | 5:+100963658 | MsG0580029702.01.T01:CDS |
| AAGAGCACTTCCCACCGAAA+AGG | 0.541834 | 5:+100961806 | MsG0580029702.01.T01:CDS |
| CGAGATGGCATCTCGTCATA+GGG | 0.544710 | 5:+100963595 | MsG0580029702.01.T01:CDS |
| CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 5:-100963476 | None:intergenic |
| GAAACAGTTTCACCAGTACC+AGG | 0.549157 | 5:+100961776 | MsG0580029702.01.T01:intron |
| TTCCAAAATCAAGTTCCCTC+TGG | 0.549470 | 5:+100963703 | MsG0580029702.01.T01:CDS |
| ACTGAATCACATAAACAGGT+TGG | 0.563649 | 5:-100963786 | None:intergenic |
| GATCACTTTATTTCGAAGGA+GGG | 0.564288 | 5:+100964031 | MsG0580029702.01.T01:three_prime_UTR |
| GTCTTAATGATTTGAATGCA+GGG | 0.566014 | 5:-100963626 | None:intergenic |
| CATTAAGACTGCCACCATCC+CGG | 0.574553 | 5:+100963640 | MsG0580029702.01.T01:CDS |
| TTTGCACAGATTAGCCGGGA+TGG | 0.581078 | 5:-100963654 | None:intergenic |
| ATTCTCGGTAAGCAACAACT+AGG | 0.600835 | 5:-100963929 | None:intergenic |
| AGAAGATTAGGCCACCAACT+AGG | 0.603627 | 5:+100963732 | MsG0580029702.01.T01:CDS |
| TGGTTATCACAATATGTACA+AGG | 0.613559 | 5:+100963526 | MsG0580029702.01.T01:CDS |
| GAAGTGCTCTTCCAACAACC+TGG | 0.619307 | 5:-100961794 | None:intergenic |
| GCACAGATTAGCCGGGATGG+TGG | 0.623109 | 5:-100963651 | None:intergenic |
| GAAGCTTTGGGCAACCAATG+AGG | 0.630309 | 5:+100961854 | MsG0580029702.01.T01:CDS |
| CTAATCTTCTTGTACACCAG+AGG | 0.631597 | 5:-100963719 | None:intergenic |
| TAATCTTCTTGTACACCAGA+GGG | 0.642722 | 5:-100963718 | None:intergenic |
| ATTGTTGTAGGTATTTCTTG+AGG | 0.651477 | 5:+100961997 | MsG0580029702.01.T01:intron |
| GGAGACAATGTACAACGAGA+TGG | 0.663821 | 5:+100963580 | MsG0580029702.01.T01:CDS |
| CGCCGTTTAGAGTAGTATCA+CGG | 0.671590 | 5:-100963553 | None:intergenic |
| TACTACTCTAAACGGCGCTG+TGG | 0.679213 | 5:+100963559 | MsG0580029702.01.T01:CDS |
| TGACGCAAAACTACAATCAG+CGG | 0.685068 | 5:+100961630 | MsG0580029702.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCAACAAATAAAAAAAAA+TGG | - | Chr5:100962955-100962974 | None:intergenic | 15.0% |
| !! | ATTAATTGAAATTTGATAGA+AGG | + | Chr5:100962087-100962106 | MsG0580029702.01.T01:intron | 15.0% |
| !! | GAATAGAAAAAATTAATGAT+AGG | + | Chr5:100962363-100962382 | MsG0580029702.01.T01:intron | 15.0% |
| !! | TTAATAATGTTAATTGTTGT+AGG | + | Chr5:100961985-100962004 | MsG0580029702.01.T01:intron | 15.0% |
| !! | TTAATTGAAATTTGATAGAA+GGG | + | Chr5:100962088-100962107 | MsG0580029702.01.T01:intron | 15.0% |
| !! | AGAAGATAAAACAAAATTCT+CGG | - | Chr5:100963947-100963966 | None:intergenic | 20.0% |
| !! | AGTCACAATATACAATTTAA+AGG | - | Chr5:100963245-100963264 | None:intergenic | 20.0% |
| !! | ATATTAGTATATTGTACAGT+TGG | + | Chr5:100962434-100962453 | MsG0580029702.01.T01:intron | 20.0% |
| !! | GTAAATAAAAACAAATAAGC+TGG | - | Chr5:100962165-100962184 | None:intergenic | 20.0% |
| !!! | ATTTTAAGTAGATAGTACTT+TGG | + | Chr5:100963017-100963036 | MsG0580029702.01.T01:intron | 20.0% |
| ! | AAGAAGGTTAAGAAAAGTAA+TGG | + | Chr5:100962026-100962045 | MsG0580029702.01.T01:CDS | 25.0% |
| ! | AATTCCATAGTTCTTAATCT+TGG | - | Chr5:100963483-100963502 | None:intergenic | 25.0% |
| ! | AGATTAAGAACTATGGAATT+TGG | + | Chr5:100963483-100963502 | MsG0580029702.01.T01:CDS | 25.0% |
| ! | ATTTATACTTAGACTGTGTT+TGG | + | Chr5:100962126-100962145 | MsG0580029702.01.T01:intron | 25.0% |
| ! | CAAAATAAAATCAGTTCAGA+AGG | - | Chr5:100961724-100961743 | None:intergenic | 25.0% |
| ! | GTTTCAACAAAAGTTTATAC+CGG | - | Chr5:100961761-100961780 | None:intergenic | 25.0% |
| ! | TAAACAAGTTCTTATAAGGT+AGG | - | Chr5:100962299-100962318 | None:intergenic | 25.0% |
| ! | TGAGAAAATTAAGTTTGATG+CGG | + | Chr5:100962925-100962944 | MsG0580029702.01.T01:intron | 25.0% |
| ! | TGGTTAAACAAGTTCTTATA+AGG | - | Chr5:100962303-100962322 | None:intergenic | 25.0% |
| ! | TTATGTTGAAATCCAAACAT+AGG | + | Chr5:100963181-100963200 | MsG0580029702.01.T01:intron | 25.0% |
| ! | TTCTTCAATAGACATCAAAA+AGG | - | Chr5:100962816-100962835 | None:intergenic | 25.0% |
| !! | TGCATGTAAAAGCTTTTATT+TGG | + | Chr5:100962267-100962286 | MsG0580029702.01.T01:intron | 25.0% |
| !! | TTTTTCTCTTTATGATGTAC+TGG | + | Chr5:100963984-100964003 | MsG0580029702.01.T01:three_prime_UTR | 25.0% |
| AAATGATGTATTGCCATAAC+TGG | - | Chr5:100963210-100963229 | None:intergenic | 30.0% | |
| AACTTACCAGAATTTGGATT+TGG | - | Chr5:100961886-100961905 | None:intergenic | 30.0% | |
| AATAAAATCAGTTCAGAAGG+TGG | - | Chr5:100961721-100961740 | None:intergenic | 30.0% | |
| AATTGTTGTGAGAGAATTCT+TGG | + | Chr5:100963344-100963363 | MsG0580029702.01.T01:intron | 30.0% | |
| ACAACCAGAATATCATTAGA+GGG | - | Chr5:100962568-100962587 | None:intergenic | 30.0% | |
| AGTCTTAATGATTTGAATGC+AGG | - | Chr5:100963630-100963649 | None:intergenic | 30.0% | |
| ATCAGAAACTTACCAGAATT+TGG | - | Chr5:100961892-100961911 | None:intergenic | 30.0% | |
| ATGTAATATCTGTCAGTTCT+TGG | + | Chr5:100962680-100962699 | MsG0580029702.01.T01:intron | 30.0% | |
| ATTCACTGAATCACATAAAC+AGG | - | Chr5:100963793-100963812 | None:intergenic | 30.0% | |
| ATTGTTGTAGGTATTTCTTG+AGG | + | Chr5:100961997-100962016 | MsG0580029702.01.T01:intron | 30.0% | |
| GTCTTAATGATTTGAATGCA+GGG | - | Chr5:100963629-100963648 | None:intergenic | 30.0% | |
| TAAGTAGATAGTACTTTGGT+TGG | + | Chr5:100963021-100963040 | MsG0580029702.01.T01:intron | 30.0% | |
| TAATAGCTAAAGCAAACACA+GGG | - | Chr5:100963380-100963399 | None:intergenic | 30.0% | |
| TCCAAAAAGATGGAAATTGA+AGG | - | Chr5:100963408-100963427 | None:intergenic | 30.0% | |
| TGGTTATCACAATATGTACA+AGG | + | Chr5:100963526-100963545 | MsG0580029702.01.T01:CDS | 30.0% | |
| TTCTGCTAAAGACAACAAAA+AGG | - | Chr5:100962725-100962744 | None:intergenic | 30.0% | |
| ! | ACCTTCAATTTCCATCTTTT+TGG | + | Chr5:100963404-100963423 | MsG0580029702.01.T01:intron | 30.0% |
| ! | ATTTCCATCTTTTTGGACAT+AGG | + | Chr5:100963411-100963430 | MsG0580029702.01.T01:intron | 30.0% |
| ! | TTTCCATCTTTTTGGACATA+GGG | + | Chr5:100963412-100963431 | MsG0580029702.01.T01:intron | 30.0% |
| !! | AGAGGAGAAAGTTATTTCTT+AGG | + | Chr5:100962408-100962427 | MsG0580029702.01.T01:intron | 30.0% |
| !! | ATAGTACTTTGGTTGGTAAA+GGG | + | Chr5:100963028-100963047 | MsG0580029702.01.T01:intron | 30.0% |
| !!! | GAAAAGTAATGGACAAGTTT+TGG | + | Chr5:100962037-100962056 | MsG0580029702.01.T01:CDS | 30.0% |
| AAGCTTCATGCGATAAATCT+TGG | - | Chr5:100961841-100961860 | None:intergenic | 35.0% | |
| ACTGAATCACATAAACAGGT+TGG | - | Chr5:100963789-100963808 | None:intergenic | 35.0% | |
| AGAGCAAACTTGAACTCATT+TGG | + | Chr5:100962622-100962641 | MsG0580029702.01.T01:intron | 35.0% | |
| AGATTTATCGCATGAAGCTT+TGG | + | Chr5:100961841-100961860 | MsG0580029702.01.T01:CDS | 35.0% | |
| AGCAAAAATGGTTAACGCTA+AGG | + | Chr5:100961666-100961685 | MsG0580029702.01.T01:exon | 35.0% | |
| AGCTTCATGCGATAAATCTT+GGG | - | Chr5:100961840-100961859 | None:intergenic | 35.0% | |
| CAAACATAGGTAACCAGTTA+TGG | + | Chr5:100963194-100963213 | MsG0580029702.01.T01:intron | 35.0% | |
| CAAACTTGAACTCATTTGGT+GGG | + | Chr5:100962626-100962645 | MsG0580029702.01.T01:intron | 35.0% | |
| CACAACCAGAATATCATTAG+AGG | - | Chr5:100962569-100962588 | None:intergenic | 35.0% | |
| CACATTTCGCTTCTCATATT+GGG | + | Chr5:100963813-100963832 | MsG0580029702.01.T01:three_prime_UTR | 35.0% | |
| CATAAATGGAGGTAAATGGA+TGG | - | Chr5:100962520-100962539 | None:intergenic | 35.0% | |
| CATAACTGGTTACCTATGTT+TGG | - | Chr5:100963196-100963215 | None:intergenic | 35.0% | |
| CCATAGTTCTTAATCTTGGT+AGG | - | Chr5:100963479-100963498 | None:intergenic | 35.0% | |
| CCTACCAAGATTAAGAACTA+TGG | + | Chr5:100963476-100963495 | MsG0580029702.01.T01:CDS | 35.0% | |
| CTCTCATAAATGGAGGTAAA+TGG | - | Chr5:100962524-100962543 | None:intergenic | 35.0% | |
| CTGAATCACATAAACAGGTT+GGG | - | Chr5:100963788-100963807 | None:intergenic | 35.0% | |
| CTGTGGAGTTAATGTTAAGT+TGG | + | Chr5:100962341-100962360 | MsG0580029702.01.T01:intron | 35.0% | |
| GATTTATCGCATGAAGCTTT+GGG | + | Chr5:100961842-100961861 | MsG0580029702.01.T01:CDS | 35.0% | |
| GTAATAGCTAAAGCAAACAC+AGG | - | Chr5:100963381-100963400 | None:intergenic | 35.0% | |
| GTTCTGTTGTGATTATTGCT+GGG | + | Chr5:100963081-100963100 | MsG0580029702.01.T01:intron | 35.0% | |
| GTTTGTGTCTCTCTCATAAA+TGG | - | Chr5:100962534-100962553 | None:intergenic | 35.0% | |
| TAATCTTCTTGTACACCAGA+GGG | - | Chr5:100963721-100963740 | None:intergenic | 35.0% | |
| TACCGTGATACTACTCTAAA+CGG | + | Chr5:100963551-100963570 | MsG0580029702.01.T01:CDS | 35.0% | |
| TACTTAGACTGTGTTTGGAT+TGG | + | Chr5:100962131-100962150 | MsG0580029702.01.T01:intron | 35.0% | |
| TCACATTTCGCTTCTCATAT+TGG | + | Chr5:100963812-100963831 | MsG0580029702.01.T01:three_prime_UTR | 35.0% | |
| TGTGTACGAGGTAGATATAT+GGG | + | Chr5:100962882-100962901 | MsG0580029702.01.T01:intron | 35.0% | |
| TGTTCTGTTGTGATTATTGC+TGG | + | Chr5:100963080-100963099 | MsG0580029702.01.T01:intron | 35.0% | |
| TTTCTTGAGGAAGTTGAAGA+AGG | + | Chr5:100962010-100962029 | MsG0580029702.01.T01:CDS | 35.0% | |
| ! | AAACTTGAACTCATTTGGTG+GGG | + | Chr5:100962627-100962646 | MsG0580029702.01.T01:intron | 35.0% |
| ! | GATCACTTTATTTCGAAGGA+GGG | + | Chr5:100964031-100964050 | MsG0580029702.01.T01:three_prime_UTR | 35.0% |
| ! | TAGCGATCACTTTATTTCGA+AGG | + | Chr5:100964027-100964046 | MsG0580029702.01.T01:three_prime_UTR | 35.0% |
| ! | TTCCATCTTTTTGGACATAG+GGG | + | Chr5:100963413-100963432 | MsG0580029702.01.T01:intron | 35.0% |
| ! | TTTTGTGTGAATCGTAACAC+CGG | + | Chr5:100961739-100961758 | MsG0580029702.01.T01:intron | 35.0% |
| !! | ATTTGGTGGGGATTTGATTT+TGG | + | Chr5:100962639-100962658 | MsG0580029702.01.T01:intron | 35.0% |
| !! | GATAGTACTTTGGTTGGTAA+AGG | + | Chr5:100963027-100963046 | MsG0580029702.01.T01:intron | 35.0% |
| !! | TAACTCCACAGCTGTTTTAA+GGG | - | Chr5:100962332-100962351 | None:intergenic | 35.0% |
| !! | TTAACTCCACAGCTGTTTTA+AGG | - | Chr5:100962333-100962352 | None:intergenic | 35.0% |
| !! | TTTGGTGGGGATTTGATTTT+GGG | + | Chr5:100962640-100962659 | MsG0580029702.01.T01:intron | 35.0% |
| !!! | ACAAGTTTTGGCTATCAATG+AGG | + | Chr5:100962049-100962068 | MsG0580029702.01.T01:CDS | 35.0% |
| !!! | TGGCTTTGTAGGTTGTTTTT+AGG | - | Chr5:100963760-100963779 | None:intergenic | 35.0% |
| AACCCCTATGTCCAAAAAGA+TGG | - | Chr5:100963418-100963437 | None:intergenic | 40.0% | |
| AATAACTTTCTCCTCTCCAC+AGG | - | Chr5:100962404-100962423 | None:intergenic | 40.0% | |
| ATAACTTTCTCCTCTCCACA+GGG | - | Chr5:100962403-100962422 | None:intergenic | 40.0% | |
| ATGCGTATAGAGACTCTGTT+CGG | + | Chr5:100962477-100962496 | MsG0580029702.01.T01:intron | 40.0% | |
| ATTCTCGGTAAGCAACAACT+AGG | - | Chr5:100963932-100963951 | None:intergenic | 40.0% | |
| CTAATCTTCTTGTACACCAG+AGG | - | Chr5:100963722-100963741 | None:intergenic | 40.0% | |
| CTAGATTCCACCATGACTTA+GGG | - | Chr5:100962861-100962880 | None:intergenic | 40.0% | |
| CTCTGGTGTACAAGAAGATT+AGG | + | Chr5:100963720-100963739 | MsG0580029702.01.T01:CDS | 40.0% | |
| GCAAACTTGAACTCATTTGG+TGG | + | Chr5:100962625-100962644 | MsG0580029702.01.T01:intron | 40.0% | |
| GTGTGTACGAGGTAGATATA+TGG | + | Chr5:100962881-100962900 | MsG0580029702.01.T01:intron | 40.0% | |
| GTTCACGGTCATAGCAAAAA+TGG | + | Chr5:100961654-100961673 | MsG0580029702.01.T01:exon | 40.0% | |
| TACTTGCATAAGCGCTTATG+AGG | + | Chr5:100962182-100962201 | MsG0580029702.01.T01:intron | 40.0% | |
| TGACGCAAAACTACAATCAG+CGG | + | Chr5:100961630-100961649 | MsG0580029702.01.T01:five_prime_UTR | 40.0% | |
| TGGACCCTCTAATGATATTC+TGG | + | Chr5:100962561-100962580 | MsG0580029702.01.T01:intron | 40.0% | |
| TGTAACCTTTCCCTAAGTCA+TGG | + | Chr5:100962848-100962867 | MsG0580029702.01.T01:intron | 40.0% | |
| TGTGAGAGAATTCTTGGAGT+AGG | + | Chr5:100963350-100963369 | MsG0580029702.01.T01:intron | 40.0% | |
| TGTGTCTCTCTCATAAATGG+AGG | - | Chr5:100962531-100962550 | None:intergenic | 40.0% | |
| TTCCAAAATCAAGTTCCCTC+TGG | + | Chr5:100963703-100963722 | MsG0580029702.01.T01:CDS | 40.0% | |
| TTCGTGCCAAATCCAAATTC+TGG | + | Chr5:100961877-100961896 | MsG0580029702.01.T01:CDS | 40.0% | |
| ! | CGATCACTTTATTTCGAAGG+AGG | + | Chr5:100964030-100964049 | MsG0580029702.01.T01:three_prime_UTR | 40.0% |
| ! | CTTGGGATGTTCATCCTTTT+CGG | - | Chr5:100961823-100961842 | None:intergenic | 40.0% |
| ! | GAGTATAATTTTGCACCCTG+TGG | + | Chr5:100962385-100962404 | MsG0580029702.01.T01:intron | 40.0% |
| !! | TACTTTGGTTGGTAAAGGGA+AGG | + | Chr5:100963032-100963051 | MsG0580029702.01.T01:intron | 40.0% |
| !!! | AGCTGTTTTAAGGGACTGTT+TGG | - | Chr5:100962323-100962342 | None:intergenic | 40.0% |
| !!! | GTTGTTTTTAGGCTCCTAGT+TGG | - | Chr5:100963749-100963768 | None:intergenic | 40.0% |
| AACCTTTCCCTAAGTCATGG+TGG | + | Chr5:100962851-100962870 | MsG0580029702.01.T01:intron | 45.0% | |
| ACAGTCCCTTAAAACAGCTG+TGG | + | Chr5:100962324-100962343 | MsG0580029702.01.T01:intron | 45.0% | |
| AGAAGATTAGGCCACCAACT+AGG | + | Chr5:100963732-100963751 | MsG0580029702.01.T01:CDS | 45.0% | |
| CCTAGATTCCACCATGACTT+AGG | - | Chr5:100962862-100962881 | None:intergenic | 45.0% | |
| GAAACAGTTTCACCAGTACC+AGG | + | Chr5:100961776-100961795 | MsG0580029702.01.T01:intron | 45.0% | |
| GAACAAGCCCTACTTGCAAT+CGG | - | Chr5:100963065-100963084 | None:intergenic | 45.0% | |
| GAGAGACACAAACGATAGAG+TGG | + | Chr5:100962541-100962560 | MsG0580029702.01.T01:intron | 45.0% | |
| GGAGACAATGTACAACGAGA+TGG | + | Chr5:100963580-100963599 | MsG0580029702.01.T01:CDS | 45.0% | |
| TGTTGCTCCGATTGCAAGTA+GGG | + | Chr5:100963055-100963074 | MsG0580029702.01.T01:intron | 45.0% | |
| TTCCACCATGACTTAGGGAA+AGG | - | Chr5:100962856-100962875 | None:intergenic | 45.0% | |
| TTGCGTTATCAGAGTCGTAC+TGG | + | Chr5:100963506-100963525 | MsG0580029702.01.T01:CDS | 45.0% | |
| TTTCACCAGTACCAGGTTGT+TGG | + | Chr5:100961783-100961802 | MsG0580029702.01.T01:CDS | 45.0% | |
| ! | CACCAGAGGGAACTTGATTT+TGG | - | Chr5:100963708-100963727 | None:intergenic | 45.0% |
| ! | CATAAACAGGTTGGGCTTCT+TGG | - | Chr5:100963780-100963799 | None:intergenic | 45.0% |
| ! | CCTAAGTCATGGTGGAATCT+AGG | + | Chr5:100962859-100962878 | MsG0580029702.01.T01:intron | 45.0% |
| ! | CGCCGTTTAGAGTAGTATCA+CGG | - | Chr5:100963556-100963575 | None:intergenic | 45.0% |
| ! | GGATGTTCATCCTTTTCGGT+GGG | - | Chr5:100961819-100961838 | None:intergenic | 45.0% |
| ! | TAATTTTGCACCCTGTGGAG+AGG | + | Chr5:100962390-100962409 | MsG0580029702.01.T01:intron | 45.0% |
| ! | TCCCTTTTGCACAGATTAGC+CGG | - | Chr5:100963662-100963681 | None:intergenic | 45.0% |
| !! | GTTTTTAGGCTCCTAGTTGG+TGG | - | Chr5:100963746-100963765 | None:intergenic | 45.0% |
| ACGAGATGGCATCTCGTCAT+AGG | + | Chr5:100963594-100963613 | MsG0580029702.01.T01:CDS | 50.0% | |
| ACTACAATCAGCGGCGTTCA+CGG | + | Chr5:100961639-100961658 | MsG0580029702.01.T01:five_prime_UTR | 50.0% | |
| CATTAAGACTGCCACCATCC+CGG | + | Chr5:100963640-100963659 | MsG0580029702.01.T01:CDS | 50.0% | |
| CCCGGCTAATCTGTGCAAAA+GGG | + | Chr5:100963658-100963677 | MsG0580029702.01.T01:CDS | 50.0% | |
| CGAGATGGCATCTCGTCATA+GGG | + | Chr5:100963595-100963614 | MsG0580029702.01.T01:CDS | 50.0% | |
| CTCTTCCAACAACCTGGTAC+TGG | - | Chr5:100961791-100961810 | None:intergenic | 50.0% | |
| GGATTTGGCACGAACCTCAT+TGG | - | Chr5:100961871-100961890 | None:intergenic | 50.0% | |
| GTGGAATCTAGGTGTGTACG+AGG | + | Chr5:100962870-100962889 | MsG0580029702.01.T01:intron | 50.0% | |
| TACTACTCTAAACGGCGCTG+TGG | + | Chr5:100963559-100963578 | MsG0580029702.01.T01:CDS | 50.0% | |
| TCCCGGCTAATCTGTGCAAA+AGG | + | Chr5:100963657-100963676 | MsG0580029702.01.T01:CDS | 50.0% | |
| ! | GAAGTGCTCTTCCAACAACC+TGG | - | Chr5:100961797-100961816 | None:intergenic | 50.0% |
| ! | GGGATGTTCATCCTTTTCGG+TGG | - | Chr5:100961820-100961839 | None:intergenic | 50.0% |
| ! | GTGTTGCTCCGATTGCAAGT+AGG | + | Chr5:100963054-100963073 | MsG0580029702.01.T01:intron | 50.0% |
| ! | TTTGCACAGATTAGCCGGGA+TGG | - | Chr5:100963657-100963676 | None:intergenic | 50.0% |
| !! | AAGAGCACTTCCCACCGAAA+AGG | + | Chr5:100961806-100961825 | MsG0580029702.01.T01:CDS | 50.0% |
| !! | CCCTTTTGCACAGATTAGCC+GGG | - | Chr5:100963661-100963680 | None:intergenic | 50.0% |
| !! | GAAGCTTTGGGCAACCAATG+AGG | + | Chr5:100961854-100961873 | MsG0580029702.01.T01:CDS | 50.0% |
| !! | GTTGGGCTTCTTGGCTTTGT+AGG | - | Chr5:100963771-100963790 | None:intergenic | 50.0% |
| TGGCATCTCGTCATAGGGTC+AGG | + | Chr5:100963600-100963619 | MsG0580029702.01.T01:CDS | 55.0% | |
| ! | GCACAGATTAGCCGGGATGG+TGG | - | Chr5:100963654-100963673 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 100961628 | 100964058 | 100961628 | ID=MsG0580029702.01;Name=MsG0580029702.01 |
| Chr5 | mRNA | 100961628 | 100964058 | 100961628 | ID=MsG0580029702.01.T01;Parent=MsG0580029702.01;Name=MsG0580029702.01.T01;_AED=0.48;_eAED=0.48;_QI=45|1|1|1|0.75|0.6|5|207|178 |
| Chr5 | exon | 100961628 | 100961687 | 100961628 | ID=MsG0580029702.01.T01:exon:36648;Parent=MsG0580029702.01.T01 |
| Chr5 | exon | 100961783 | 100961898 | 100961783 | ID=MsG0580029702.01.T01:exon:36649;Parent=MsG0580029702.01.T01 |
| Chr5 | exon | 100962007 | 100962070 | 100962007 | ID=MsG0580029702.01.T01:exon:36650;Parent=MsG0580029702.01.T01 |
| Chr5 | exon | 100963461 | 100963860 | 100963461 | ID=MsG0580029702.01.T01:exon:36651;Parent=MsG0580029702.01.T01 |
| Chr5 | exon | 100963910 | 100964058 | 100963910 | ID=MsG0580029702.01.T01:exon:36652;Parent=MsG0580029702.01.T01 |
| Chr5 | five_prime_UTR | 100961628 | 100961672 | 100961628 | ID=MsG0580029702.01.T01:five_prime_utr;Parent=MsG0580029702.01.T01 |
| Chr5 | CDS | 100961673 | 100961687 | 100961673 | ID=MsG0580029702.01.T01:cds;Parent=MsG0580029702.01.T01 |
| Chr5 | CDS | 100961783 | 100961898 | 100961783 | ID=MsG0580029702.01.T01:cds;Parent=MsG0580029702.01.T01 |
| Chr5 | CDS | 100962007 | 100962070 | 100962007 | ID=MsG0580029702.01.T01:cds;Parent=MsG0580029702.01.T01 |
| Chr5 | CDS | 100963461 | 100963802 | 100963461 | ID=MsG0580029702.01.T01:cds;Parent=MsG0580029702.01.T01 |
| Chr5 | three_prime_UTR | 100963803 | 100963860 | 100963803 | ID=MsG0580029702.01.T01:three_prime_utr;Parent=MsG0580029702.01.T01 |
| Chr5 | three_prime_UTR | 100963910 | 100964058 | 100963910 | ID=MsG0580029702.01.T01:three_prime_utr;Parent=MsG0580029702.01.T01 |
| Gene Sequence |
| Protein sequence |
