AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029703.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029703.01.T01 MTR_5g091135 100.000 173 0 0 40 212 6 178 8.24e-129 360
MsG0580029703.01.T01 MTR_5g091120 100.000 173 0 0 40 212 6 178 8.24e-129 360
MsG0580029703.01.T01 MTR_2g098000 100.000 173 0 0 40 212 6 178 8.24e-129 360
MsG0580029703.01.T01 MTR_3g046320 95.954 173 7 0 40 212 6 178 1.51e-123 347
MsG0580029703.01.T01 MTR_3g046320 95.954 173 7 0 40 212 4 176 1.68e-123 347
MsG0580029703.01.T01 MTR_2g019720 62.353 85 32 0 126 210 1 85 1.61e-32 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029703.01.T01 AT2G34480 90.751 173 16 0 40 212 45 217 2.56e-118 335
MsG0580029703.01.T01 AT2G34480 90.751 173 16 0 40 212 6 178 3.20e-118 333
MsG0580029703.01.T01 AT1G29965 88.571 175 20 0 38 212 4 178 8.97e-117 330
MsG0580029703.01.T01 AT3G14600 88.068 176 21 0 37 212 3 178 3.94e-116 328
MsG0580029703.01.T01 AT1G29970 88.571 175 20 0 38 212 138 312 2.21e-114 329

Find 63 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGAGACTTACCAGAATT+TGG 0.183241 5:-100976230 None:intergenic
CACCAGAGGGAACTTGATTT+TGG 0.187302 5:-100977853 None:intergenic
CATAAACAGGTTGGGCTTCT+TGG 0.201042 5:-100977925 None:intergenic
AGATTAAGAACTATGGAATT+TGG 0.243479 5:+100977631 MsG0580029703.01.T01:CDS
GAAAAGCAATGGACAAGTTT+TGG 0.246012 5:+100976378 MsG0580029703.01.T01:CDS
GTTGGGCTTCTTGGCTTTGT+AGG 0.248408 5:-100977916 None:intergenic
TTTCCACAACAAAATGGTTT+TGG 0.290255 5:+100975262 MsG0580029703.01.T01:CDS
AAACTATTTCCACAACAAAA+TGG 0.301665 5:+100975256 MsG0580029703.01.T01:CDS
AGTGGAGTTGCTTGATTTAT+CGG 0.302374 5:+100977972 MsG0580029703.01.T01:three_prime_UTR
ACGAAATGGCATCTCGTCAT+AGG 0.320455 5:+100977742 MsG0580029703.01.T01:CDS
AGATTTATCGTATGAAGCTT+TGG 0.340515 5:+100976182 MsG0580029703.01.T01:CDS
GACTTACCAGAATTTGGATT+TGG 0.342784 5:-100976224 None:intergenic
GATGATGAGATTGAAGATTC+TGG 0.352230 5:+100975190 MsG0580029703.01.T01:CDS
GATTTATCGTATGAAGCTTT+GGG 0.356570 5:+100976183 MsG0580029703.01.T01:CDS
CCTACCAAGATTAAGAACTA+TGG 0.366976 5:+100977624 MsG0580029703.01.T01:CDS
TTCGTGCCAAATCCAAATTC+TGG 0.381119 5:+100976218 MsG0580029703.01.T01:CDS
TCCCGGCTAATCTGTGCAAA+AGG 0.396699 5:+100977805 MsG0580029703.01.T01:CDS
AATTCCATAGTTCTTAATCT+TGG 0.403701 5:-100977628 None:intergenic
ATTCACTGAATCACATAAAC+AGG 0.404006 5:-100977938 None:intergenic
TGGTGGCTGTCTTAATGATC+TGG 0.405710 5:-100977782 None:intergenic
TGATCACTTTGTTTCAAAGT+AGG 0.411849 5:+100978123 MsG0580029703.01.T01:three_prime_UTR
AGCTTCATACGATAAATCTT+AGG 0.433968 5:-100976178 None:intergenic
GGATTTGGCACGAACCTCAT+TGG 0.442665 5:-100976209 None:intergenic
TACCGTGATACTACTCTAAA+CGG 0.448863 5:+100977699 MsG0580029703.01.T01:CDS
GATCACTTTGTTTCAAAGTA+GGG 0.449721 5:+100978124 MsG0580029703.01.T01:three_prime_UTR
TTTCTTAAGGAAGTTGAAGA+AGG 0.460521 5:+100976351 MsG0580029703.01.T01:CDS
CTCTGGTGTACAAGAAGATT+AGG 0.461451 5:+100977868 MsG0580029703.01.T01:CDS
ATTGTTGTAGGTATTTCTTA+AGG 0.471637 5:+100976338 MsG0580029703.01.T01:intron
TTGATGTACTGTTATAAGCT+CGG 0.476925 5:+100978088 MsG0580029703.01.T01:three_prime_UTR
CTGAATCACATAAACAGGTT+GGG 0.486125 5:-100977933 None:intergenic
CCCTTCCGACAACCTGGTAC+TGG 0.493497 5:-100976129 None:intergenic
TGGCATCTCGTCATAGGGTC+AGG 0.499078 5:+100977748 MsG0580029703.01.T01:CDS
TTGCGTTATCAGAGTCGTAC+TGG 0.505845 5:+100977654 MsG0580029703.01.T01:CDS
ATAAATCAAGCAACTCCACT+AGG 0.511786 5:-100977969 None:intergenic
GGAGACAATGTACAACGAAA+TGG 0.522780 5:+100977728 MsG0580029703.01.T01:CDS
AAGGGCTCTTCCCACCGAAA+AGG 0.526516 5:+100976147 MsG0580029703.01.T01:CDS
TTTCACCAGTACCAGGTTGT+CGG 0.538716 5:+100976124 MsG0580029703.01.T01:CDS
CCCGGCTAATCTGTGCAAAA+GGG 0.540578 5:+100977806 MsG0580029703.01.T01:CDS
CGAAATGGCATCTCGTCATA+GGG 0.541059 5:+100977743 MsG0580029703.01.T01:CDS
CCATAGTTCTTAATCTTGGT+AGG 0.548600 5:-100977624 None:intergenic
GAAACAGTTTCACCAGTACC+AGG 0.549157 5:+100976117 MsG0580029703.01.T01:intron
TTCCAAAATCAAGTTCCCTC+TGG 0.549470 5:+100977851 MsG0580029703.01.T01:CDS
AAGAAGGTTAAGAAAAGCAA+TGG 0.552641 5:+100976367 MsG0580029703.01.T01:CDS
TCCTAGTTTGTTATTTACTG+AGG 0.554608 5:+100978022 MsG0580029703.01.T01:three_prime_UTR
CCAGTACCAGGTTGTCGGAA+GGG 0.555213 5:+100976129 MsG0580029703.01.T01:CDS
ACCAGTACCAGGTTGTCGGA+AGG 0.560011 5:+100976128 MsG0580029703.01.T01:CDS
ACTGAATCACATAAACAGGT+TGG 0.563649 5:-100977934 None:intergenic
GTCTTAATGATCTGGATGCA+AGG 0.568738 5:-100977774 None:intergenic
TTTGCACAGATTAGCCGGGA+TGG 0.581078 5:-100977802 None:intergenic
GCACAGATTAGCCGGGATGG+TGG 0.585618 5:-100977799 None:intergenic
GAAGAGCCCTTCCGACAACC+TGG 0.589985 5:-100976135 None:intergenic
CATTAAGACAGCCACCATCC+CGG 0.598852 5:+100977788 MsG0580029703.01.T01:CDS
AGTGAATCACATTTCCCTAG+TGG 0.598919 5:+100977954 MsG0580029703.01.T01:three_prime_UTR
TAAATCAAGCAACTCCACTA+GGG 0.601995 5:-100977968 None:intergenic
AGAAGATTAGGCCACCAACT+AGG 0.603627 5:+100977880 MsG0580029703.01.T01:CDS
TCCTCAGTAAATAACAAACT+AGG 0.604956 5:-100978023 None:intergenic
TGGTTATCACAATATGTACA+AGG 0.613559 5:+100977674 MsG0580029703.01.T01:CDS
GAAGCTTTGGGCAACCAATG+AGG 0.631227 5:+100976195 MsG0580029703.01.T01:CDS
CTAATCTTCTTGTACACCAG+AGG 0.631597 5:-100977867 None:intergenic
TAATCTTCTTGTACACCAGA+GGG 0.642722 5:-100977866 None:intergenic
TACTACTCTAAACGGTGCTG+TGG 0.650976 5:+100977707 MsG0580029703.01.T01:CDS
CACCGTTTAGAGTAGTATCA+CGG 0.660256 5:-100977701 None:intergenic
ATGGTGATGACGATGAACGA+CGG 0.779583 5:+100975163 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATGTTAATTGTTGT+AGG + Chr5:100976326-100976345 MsG0580029703.01.T01:intron 15.0%
!!! TTTCAAAGAAGTTTTATTTT+GGG + Chr5:100977034-100977053 MsG0580029703.01.T01:intron 15.0%
!!! TTTTCAAAGAAGTTTTATTT+TGG + Chr5:100977033-100977052 MsG0580029703.01.T01:intron 15.0%
!! AAAAAAGAACAGAAAAACAT+AGG - Chr5:100977061-100977080 None:intergenic 20.0%
!! AAAATTGAAGCAAAGAAAAA+CGG - Chr5:100975476-100975495 None:intergenic 20.0%
!! AGTTGTTAATTGAAATTTGA+TGG + Chr5:100976433-100976452 MsG0580029703.01.T01:intron 20.0%
!! ATAAATGACAAAATATGCAA+TGG - Chr5:100977466-100977485 None:intergenic 20.0%
!! ATAAGGATATTCAATTATGT+TGG + Chr5:100975434-100975453 MsG0580029703.01.T01:intron 20.0%
!! CATTTATTCTAGTAAAAGTA+AGG + Chr5:100977479-100977498 MsG0580029703.01.T01:intron 20.0%
!! GATAAAAATTGAACACAAAA+TGG - Chr5:100977192-100977211 None:intergenic 20.0%
!! TAAGGATATTCAATTATGTT+GGG + Chr5:100975435-100975454 MsG0580029703.01.T01:intron 20.0%
!! TTAATTGAAATTTGATGGAA+GGG + Chr5:100976438-100976457 MsG0580029703.01.T01:intron 20.0%
!!! AATATGTTTTTCACTTCAAT+TGG + Chr5:100975773-100975792 MsG0580029703.01.T01:intron 20.0%
!!! ATATGTTTTTCACTTCAATT+GGG + Chr5:100975774-100975793 MsG0580029703.01.T01:intron 20.0%
!!! TATTTTGAAGATTCCTTTTT+AGG - Chr5:100975823-100975842 None:intergenic 20.0%
!!! TTTATTTTCAAGAAGTTAAG+TGG + Chr5:100975514-100975533 MsG0580029703.01.T01:intron 20.0%
! AAAAAAAAATGAAGGAAGGA+AGG - Chr5:100976059-100976078 None:intergenic 25.0%
! AAACTATTTCCACAACAAAA+TGG + Chr5:100975256-100975275 MsG0580029703.01.T01:CDS 25.0%
! AAACTATTTCCACAGAAAAA+TGG + Chr5:100975213-100975232 MsG0580029703.01.T01:CDS 25.0%
! AAAGATAAGTCAATACAAAC+AGG - Chr5:100976776-100976795 None:intergenic 25.0%
! AAATCTAATGTTAGGTGAAA+TGG + Chr5:100976693-100976712 MsG0580029703.01.T01:intron 25.0%
! AAATTGAAGCAAAGAAAAAC+GGG - Chr5:100975475-100975494 None:intergenic 25.0%
! AACTATTTCCACAGAAAAAT+GGG + Chr5:100975214-100975233 MsG0580029703.01.T01:CDS 25.0%
! AATCTAATGTTAGGTGAAAT+GGG + Chr5:100976694-100976713 MsG0580029703.01.T01:intron 25.0%
! AATTCCATAGTTCTTAATCT+TGG - Chr5:100977631-100977650 None:intergenic 25.0%
! AGATTAAGAACTATGGAATT+TGG + Chr5:100977631-100977650 MsG0580029703.01.T01:CDS 25.0%
! ATTGTTGTAGGTATTTCTTA+AGG + Chr5:100976338-100976357 MsG0580029703.01.T01:intron 25.0%
! CACAAAAAAAAAATGAAGGA+AGG - Chr5:100976063-100976082 None:intergenic 25.0%
! CACACACAAAAAAAAAATGA+AGG - Chr5:100976067-100976086 None:intergenic 25.0%
! GTTAATTGAAATTTGATGGA+AGG + Chr5:100976437-100976456 MsG0580029703.01.T01:intron 25.0%
! TAATAACTAAAGCTAACACA+TGG - Chr5:100977529-100977548 None:intergenic 25.0%
! TCAAAATAAGCCAATTCATT+CGG + Chr5:100976960-100976979 MsG0580029703.01.T01:intron 25.0%
! TCACCTAACATTAGATTTAA+GGG - Chr5:100976691-100976710 None:intergenic 25.0%
! TGAAAATATATCCATGCAAA+GGG + Chr5:100976742-100976761 MsG0580029703.01.T01:intron 25.0%
! TTCACCTAACATTAGATTTA+AGG - Chr5:100976692-100976711 None:intergenic 25.0%
! TTGAAAATATATCCATGCAA+AGG + Chr5:100976741-100976760 MsG0580029703.01.T01:intron 25.0%
!! AAACTTCTTTGAAAAAGTGA+CGG - Chr5:100977028-100977047 None:intergenic 25.0%
!! AAGTAGTTAGTACTTTTGTT+GGG + Chr5:100977212-100977231 MsG0580029703.01.T01:intron 25.0%
!! TATGTTTTTCACTTCAATTG+GGG + Chr5:100975775-100975794 MsG0580029703.01.T01:intron 25.0%
!! TGTTTGATTTAAGACTGATT+TGG + Chr5:100977360-100977379 MsG0580029703.01.T01:intron 25.0%
!!! AGCTTTTATGTTACTTCATA+CGG - Chr5:100976913-100976932 None:intergenic 25.0%
!!! ATTCAATTTGTTTTTGCGTT+TGG + Chr5:100975371-100975390 MsG0580029703.01.T01:intron 25.0%
!!! GTATTTAACTTTTATAGCAG+CGG - Chr5:100977170-100977189 None:intergenic 25.0%
!!! TTCAATTTGTTTTTGCGTTT+GGG + Chr5:100975372-100975391 MsG0580029703.01.T01:intron 25.0%
AAAGTAAGGCTAATTGAACT+TGG + Chr5:100977493-100977512 MsG0580029703.01.T01:intron 30.0%
AAGAAGGTTAAGAAAAGCAA+TGG + Chr5:100976367-100976386 MsG0580029703.01.T01:CDS 30.0%
AATTGAAGCAAAGAAAAACG+GGG - Chr5:100975474-100975493 None:intergenic 30.0%
AGATTTATCGTATGAAGCTT+TGG + Chr5:100976182-100976201 MsG0580029703.01.T01:CDS 30.0%
AGCTTCATACGATAAATCTT+AGG - Chr5:100976181-100976200 None:intergenic 30.0%
ATATCGTGTTTCACTTCAAT+TGG + Chr5:100975840-100975859 MsG0580029703.01.T01:intron 30.0%
ATGTATACGTGAAGAATATG+AGG + Chr5:100975557-100975576 MsG0580029703.01.T01:intron 30.0%
ATTATGTTGGGATTTATGCA+TGG + Chr5:100975408-100975427 MsG0580029703.01.T01:intron 30.0%
ATTCACTGAATCACATAAAC+AGG - Chr5:100977941-100977960 None:intergenic 30.0%
CAAAATAAGCCAATTCATTC+GGG + Chr5:100976961-100976980 MsG0580029703.01.T01:intron 30.0%
CAAAGATCTGCAAACAAAAA+AGG - Chr5:100977596-100977615 None:intergenic 30.0%
GATTCATAGAATCACTTCTT+TGG + Chr5:100976524-100976543 MsG0580029703.01.T01:intron 30.0%
GATTTATCGTATGAAGCTTT+GGG + Chr5:100976183-100976202 MsG0580029703.01.T01:CDS 30.0%
TAACTTCAATTGCAGTTTGT+TGG + Chr5:100977552-100977571 MsG0580029703.01.T01:intron 30.0%
TATCGTGTTTCACTTCAATT+GGG + Chr5:100975841-100975860 MsG0580029703.01.T01:intron 30.0%
TATTATTGATCAGCTTGTCA+AGG + Chr5:100976839-100976858 MsG0580029703.01.T01:intron 30.0%
TCCTCAGTAAATAACAAACT+AGG - Chr5:100978026-100978045 None:intergenic 30.0%
TGGTTATCACAATATGTACA+AGG + Chr5:100977674-100977693 MsG0580029703.01.T01:CDS 30.0%
TTCTGTTTGTGATTATTGCT+GGG + Chr5:100977272-100977291 MsG0580029703.01.T01:intron 30.0%
TTGATGTACTGTTATAAGCT+CGG + Chr5:100978088-100978107 MsG0580029703.01.T01:three_prime_UTR 30.0%
TTTCTTAAGGAAGTTGAAGA+AGG + Chr5:100976351-100976370 MsG0580029703.01.T01:CDS 30.0%
! AGTAGTTAGTACTTTTGTTG+GGG + Chr5:100977213-100977232 MsG0580029703.01.T01:intron 30.0%
! ATGTTTTTCACTTCAATTGG+GGG + Chr5:100975776-100975795 MsG0580029703.01.T01:intron 30.0%
! CAAGTAGTTAGTACTTTTGT+TGG + Chr5:100977211-100977230 MsG0580029703.01.T01:intron 30.0%
! CATTAAGTTGTGTAACAAAC+TGG + Chr5:100976665-100976684 MsG0580029703.01.T01:intron 30.0%
! GATCACTTTGTTTCAAAGTA+GGG + Chr5:100978124-100978143 MsG0580029703.01.T01:three_prime_UTR 30.0%
! TGATCACTTTGTTTCAAAGT+AGG + Chr5:100978123-100978142 MsG0580029703.01.T01:three_prime_UTR 30.0%
! TTTCCACAACAAAATGGTTT+TGG + Chr5:100975262-100975281 MsG0580029703.01.T01:CDS 30.0%
!! GATTTAAGACTGATTTGGAA+GGG + Chr5:100977365-100977384 MsG0580029703.01.T01:intron 30.0%
!! TCCTAGTTTGTTATTTACTG+AGG + Chr5:100978022-100978041 MsG0580029703.01.T01:three_prime_UTR 30.0%
!! TGATTTAAGACTGATTTGGA+AGG + Chr5:100977364-100977383 MsG0580029703.01.T01:intron 30.0%
!!! TCAATTTGTTTTTGCGTTTG+GGG + Chr5:100975373-100975392 MsG0580029703.01.T01:intron 30.0%
ACTGAATCACATAAACAGGT+TGG - Chr5:100977937-100977956 None:intergenic 35.0%
AGTGGAGTTGCTTGATTTAT+CGG + Chr5:100977972-100977991 MsG0580029703.01.T01:three_prime_UTR 35.0%
ATAAATCAAGCAACTCCACT+AGG - Chr5:100977972-100977991 None:intergenic 35.0%
ATCAGAGACTTACCAGAATT+TGG - Chr5:100976233-100976252 None:intergenic 35.0%
ATTGAAGCAAAGAAAAACGG+GGG - Chr5:100975473-100975492 None:intergenic 35.0%
CCATAGTTCTTAATCTTGGT+AGG - Chr5:100977627-100977646 None:intergenic 35.0%
CCTACCAAGATTAAGAACTA+TGG + Chr5:100977624-100977643 MsG0580029703.01.T01:CDS 35.0%
CTGAATCACATAAACAGGTT+GGG - Chr5:100977936-100977955 None:intergenic 35.0%
GAAGGAAATGAAAGGATTAG+TGG - Chr5:100976041-100976060 None:intergenic 35.0%
GACTTACCAGAATTTGGATT+TGG - Chr5:100976227-100976246 None:intergenic 35.0%
GATGATGAGATTGAAGATTC+TGG + Chr5:100975190-100975209 MsG0580029703.01.T01:CDS 35.0%
GTGTAGGAAGCAATTATGTT+GGG + Chr5:100975396-100975415 MsG0580029703.01.T01:intron 35.0%
GTTCTGTTTGTGATTATTGC+TGG + Chr5:100977271-100977290 MsG0580029703.01.T01:intron 35.0%
TAAATCAAGCAACTCCACTA+GGG - Chr5:100977971-100977990 None:intergenic 35.0%
TAATCTTCTTGTACACCAGA+GGG - Chr5:100977869-100977888 None:intergenic 35.0%
TACCGTGATACTACTCTAAA+CGG + Chr5:100977699-100977718 MsG0580029703.01.T01:CDS 35.0%
TCAACTATCAAAGTAGTCAC+TGG - Chr5:100977404-100977423 None:intergenic 35.0%
TGGCCCTTAAATCTAATGTT+AGG + Chr5:100976685-100976704 MsG0580029703.01.T01:intron 35.0%
TGTGTGTGTGAATCTTAACA+CGG + Chr5:100976079-100976098 MsG0580029703.01.T01:intron 35.0%
! AAGGTGATGATGATGAACTA+CGG + Chr5:100975294-100975313 MsG0580029703.01.T01:intron 35.0%
! ATGATGACGTTGCAATATGT+AGG - Chr5:100975591-100975610 None:intergenic 35.0%
! ATGCCAAAACCATTTTGTTG+TGG - Chr5:100975268-100975287 None:intergenic 35.0%
! ATGTGATGTGGGCTTTTATT+GGG - Chr5:100975880-100975899 None:intergenic 35.0%
! CTTAGGATGTTCATCCTTTT+CGG - Chr5:100976164-100976183 None:intergenic 35.0%
! GAAAAGCAATGGACAAGTTT+TGG + Chr5:100976378-100976397 MsG0580029703.01.T01:CDS 35.0%
! TGATGACGTTGCAATATGTA+GGG - Chr5:100975590-100975609 None:intergenic 35.0%
! TTAGTACTTTTGTTGGGGAA+GGG + Chr5:100977218-100977237 MsG0580029703.01.T01:intron 35.0%
! TTTCCACAGAAAAATGGGTT+TGG + Chr5:100975219-100975238 MsG0580029703.01.T01:CDS 35.0%
! TTTTATTGGGCCAATCAGTT+CGG - Chr5:100975867-100975886 None:intergenic 35.0%
!! ACAAGTTTTGGCAATCAATG+AGG + Chr5:100976390-100976409 MsG0580029703.01.T01:CDS 35.0%
!! TTTGGTGCGGATTTGATTTT+GGG + Chr5:100976991-100977010 MsG0580029703.01.T01:intron 35.0%
!!! AACTTGTTTTGAGAAGTCAC+TGG + Chr5:100977317-100977336 MsG0580029703.01.T01:intron 35.0%
!!! ACAAAATGGTTTTGGCATTC+CGG + Chr5:100975270-100975289 MsG0580029703.01.T01:CDS 35.0%
!!! CAATTTGTTTTTGCGTTTGG+GGG + Chr5:100975374-100975393 MsG0580029703.01.T01:intron 35.0%
!!! TGGCTTTGTAGGTTGTTTTT+AGG - Chr5:100977908-100977927 None:intergenic 35.0%
AGGCTAATTGAACTTGGAGT+AGG + Chr5:100977499-100977518 MsG0580029703.01.T01:intron 40.0%
AGTGAATCACATTTCCCTAG+TGG + Chr5:100977954-100977973 MsG0580029703.01.T01:three_prime_UTR 40.0%
ATAAAAGCCCACATCACATC+AGG + Chr5:100975881-100975900 MsG0580029703.01.T01:intron 40.0%
ATCAAATCCGCACCAAACAT+AGG - Chr5:100976988-100977007 None:intergenic 40.0%
CGCAAAAATGGTTAACGCTA+AGG + Chr5:100975996-100976015 MsG0580029703.01.T01:intron 40.0%
CTAATCTTCTTGTACACCAG+AGG - Chr5:100977870-100977889 None:intergenic 40.0%
CTCTGGTGTACAAGAAGATT+AGG + Chr5:100977868-100977887 MsG0580029703.01.T01:CDS 40.0%
CTTTAGACAGCTACAACTAG+CGG + Chr5:100975943-100975962 MsG0580029703.01.T01:intron 40.0%
GAACAAGCTCTACTTGCAAT+CGG - Chr5:100977255-100977274 None:intergenic 40.0%
GAAGGAAGGAAGGAAATGAA+AGG - Chr5:100976049-100976068 None:intergenic 40.0%
GATGACGTTGCAATATGTAG+GGG - Chr5:100975589-100975608 None:intergenic 40.0%
GATGAGATTGAAGATTCCAG+TGG + Chr5:100975324-100975343 MsG0580029703.01.T01:intron 40.0%
GCTAGTTGTAGCTGTCTAAA+GGG - Chr5:100975944-100975963 None:intergenic 40.0%
GGAGACAATGTACAACGAAA+TGG + Chr5:100977728-100977747 MsG0580029703.01.T01:CDS 40.0%
GGATTTATGCATGGTGCATA+AGG + Chr5:100975417-100975436 MsG0580029703.01.T01:intron 40.0%
GGCCTAAAAAGATATACAGG+GGG + Chr5:100975797-100975816 MsG0580029703.01.T01:intron 40.0%
GGGCCTAAAAAGATATACAG+GGG + Chr5:100975796-100975815 MsG0580029703.01.T01:intron 40.0%
GGGGCCTAAAAAGATATACA+GGG + Chr5:100975795-100975814 MsG0580029703.01.T01:intron 40.0%
GGTGTAGGAAGCAATTATGT+TGG + Chr5:100975395-100975414 MsG0580029703.01.T01:intron 40.0%
GTAAAACCCTGATGTGATGT+GGG - Chr5:100975891-100975910 None:intergenic 40.0%
GTCTTAATGATCTGGATGCA+AGG - Chr5:100977777-100977796 None:intergenic 40.0%
GTTCATCATCATCACCTTAC+CGG - Chr5:100975292-100975311 None:intergenic 40.0%
TAAAAGCCCACATCACATCA+GGG + Chr5:100975882-100975901 MsG0580029703.01.T01:intron 40.0%
TCAAATCCGCACCAAACATA+GGG - Chr5:100976987-100977006 None:intergenic 40.0%
TTCCAAAATCAAGTTCCCTC+TGG + Chr5:100977851-100977870 MsG0580029703.01.T01:CDS 40.0%
TTCGTGCCAAATCCAAATTC+TGG + Chr5:100976218-100976237 MsG0580029703.01.T01:CDS 40.0%
! AAAGGATTAGTGGTAGTGCT+TGG - Chr5:100976031-100976050 None:intergenic 40.0%
! ATCGGTGTTTGTCGCAAAAA+TGG + Chr5:100975984-100976003 MsG0580029703.01.T01:intron 40.0%
! CACCGTTTAGAGTAGTATCA+CGG - Chr5:100977704-100977723 None:intergenic 40.0%
! GATGTGATGTGGGCTTTTAT+TGG - Chr5:100975881-100975900 None:intergenic 40.0%
! GTTAGTACTTTTGTTGGGGA+AGG + Chr5:100977217-100977236 MsG0580029703.01.T01:intron 40.0%
!! ACTCCAAACCCATTTTTCTG+TGG - Chr5:100975225-100975244 None:intergenic 40.0%
!! TTGCAGTTTGTTGGACATAG+AGG + Chr5:100977561-100977580 MsG0580029703.01.T01:intron 40.0%
!!! GTTGTTTTTAGGCTCCTAGT+TGG - Chr5:100977897-100977916 None:intergenic 40.0%
!!! GTTTGGTGCGGATTTGATTT+TGG + Chr5:100976990-100977009 MsG0580029703.01.T01:intron 40.0%
AACATAGGGCCCGAATGAAT+TGG - Chr5:100976973-100976992 None:intergenic 45.0%
ACGAAATGGCATCTCGTCAT+AGG + Chr5:100977742-100977761 MsG0580029703.01.T01:CDS 45.0%
ACGTTGCAATATGTAGGGGT+CGG - Chr5:100975585-100975604 None:intergenic 45.0%
AGAAGATTAGGCCACCAACT+AGG + Chr5:100977880-100977899 MsG0580029703.01.T01:CDS 45.0%
AGCTGTCTAAAGGGTGAATG+AGG - Chr5:100975935-100975954 None:intergenic 45.0%
ATTCATTCGGGCCCTATGTT+TGG + Chr5:100976973-100976992 MsG0580029703.01.T01:intron 45.0%
CGAAATGGCATCTCGTCATA+GGG + Chr5:100977743-100977762 MsG0580029703.01.T01:CDS 45.0%
CGCTAGTTGTAGCTGTCTAA+AGG - Chr5:100975945-100975964 None:intergenic 45.0%
CGTAAAACCCTGATGTGATG+TGG - Chr5:100975892-100975911 None:intergenic 45.0%
GAAACAGTTTCACCAGTACC+AGG + Chr5:100976117-100976136 MsG0580029703.01.T01:intron 45.0%
GATATACAGGGGGCCTAAAA+AGG + Chr5:100975807-100975826 MsG0580029703.01.T01:intron 45.0%
GGGGGCCTAAAAAGATATAC+AGG + Chr5:100975794-100975813 MsG0580029703.01.T01:intron 45.0%
TATCCATGCAAAGGGAGACT+TGG + Chr5:100976750-100976769 MsG0580029703.01.T01:intron 45.0%
TCGTTCATCATCATCACCAC+TGG - Chr5:100975343-100975362 None:intergenic 45.0%
TGGTGGCTGTCTTAATGATC+TGG - Chr5:100977785-100977804 None:intergenic 45.0%
TTCAATTGGGCCGAACTGAT+TGG + Chr5:100975854-100975873 MsG0580029703.01.T01:intron 45.0%
TTGCGTTATCAGAGTCGTAC+TGG + Chr5:100977654-100977673 MsG0580029703.01.T01:CDS 45.0%
TTTCACCAGTACCAGGTTGT+CGG + Chr5:100976124-100976143 MsG0580029703.01.T01:CDS 45.0%
! AGGATGTTCATCCTTTTCGG+TGG - Chr5:100976161-100976180 None:intergenic 45.0%
! CACCAGAGGGAACTTGATTT+TGG - Chr5:100977856-100977875 None:intergenic 45.0%
! CATAAACAGGTTGGGCTTCT+TGG - Chr5:100977928-100977947 None:intergenic 45.0%
! GGATGTTCATCCTTTTCGGT+GGG - Chr5:100976160-100976179 None:intergenic 45.0%
! GGCCCCCTGTATATCTTTTT+AGG - Chr5:100975802-100975821 None:intergenic 45.0%
! GTGGTGATGATGATGAACGA+CGG + Chr5:100975343-100975362 MsG0580029703.01.T01:intron 45.0%
! TACTACTCTAAACGGTGCTG+TGG + Chr5:100977707-100977726 MsG0580029703.01.T01:CDS 45.0%
! TACTTTTGTTGGGGAAGGGA+AGG + Chr5:100977222-100977241 MsG0580029703.01.T01:intron 45.0%
! TCCCTTTTGCACAGATTAGC+CGG - Chr5:100977810-100977829 None:intergenic 45.0%
!! GTTTTTAGGCTCCTAGTTGG+TGG - Chr5:100977894-100977913 None:intergenic 45.0%
!!! ATGGTTTTGGCATTCCGGTA+AGG + Chr5:100975275-100975294 MsG0580029703.01.T01:intron 45.0%
CAAGCTCTACTTGCAATCGG+AGG - Chr5:100977252-100977271 None:intergenic 50.0%
CATTAAGACAGCCACCATCC+CGG + Chr5:100977788-100977807 MsG0580029703.01.T01:CDS 50.0%
CCCGGCTAATCTGTGCAAAA+GGG + Chr5:100977806-100977825 MsG0580029703.01.T01:CDS 50.0%
CGGCGGTTCTCAATCTGAAT+CGG + Chr5:100975966-100975985 MsG0580029703.01.T01:intron 50.0%
GAAGCAAAGAAAAACGGGGG+TGG - Chr5:100975470-100975489 None:intergenic 50.0%
GGATTTGGCACGAACCTCAT+TGG - Chr5:100976212-100976231 None:intergenic 50.0%
TAGACAGCTACAACTAGCGG+CGG + Chr5:100975946-100975965 MsG0580029703.01.T01:intron 50.0%
TCCCGGCTAATCTGTGCAAA+AGG + Chr5:100977805-100977824 MsG0580029703.01.T01:CDS 50.0%
! TTTGCACAGATTAGCCGGGA+TGG - Chr5:100977805-100977824 None:intergenic 50.0%
!! CCCTTTTGCACAGATTAGCC+GGG - Chr5:100977809-100977828 None:intergenic 50.0%
!! GAAGCTTTGGGCAACCAATG+AGG + Chr5:100976195-100976214 MsG0580029703.01.T01:CDS 50.0%
!! GTTGGGCTTCTTGGCTTTGT+AGG - Chr5:100977919-100977938 None:intergenic 50.0%
!! GTTTTTGCGTTTGGGGGTGT+AGG + Chr5:100975380-100975399 MsG0580029703.01.T01:intron 50.0%
AAGGGCTCTTCCCACCGAAA+AGG + Chr5:100976147-100976166 MsG0580029703.01.T01:CDS 55.0%
ACCAGTACCAGGTTGTCGGA+AGG + Chr5:100976128-100976147 MsG0580029703.01.T01:CDS 55.0%
AGGCCAAGTCTCCCTTTGCA+TGG - Chr5:100976756-100976775 None:intergenic 55.0%
CCAGTACCAGGTTGTCGGAA+GGG + Chr5:100976129-100976148 MsG0580029703.01.T01:CDS 55.0%
TGGCATCTCGTCATAGGGTC+AGG + Chr5:100977748-100977767 MsG0580029703.01.T01:CDS 55.0%
! TTCGGGCCCTATGTTTGGTG+CGG + Chr5:100976978-100976997 MsG0580029703.01.T01:intron 55.0%
ACAGCTACAACTAGCGGCGG+CGG + Chr5:100975949-100975968 MsG0580029703.01.T01:intron 60.0%
CCCTTCCGACAACCTGGTAC+TGG - Chr5:100976132-100976151 None:intergenic 60.0%
GAAGAGCCCTTCCGACAACC+TGG - Chr5:100976138-100976157 None:intergenic 60.0%
! GCACAGATTAGCCGGGATGG+TGG - Chr5:100977802-100977821 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 100975175 100978149 100975175 ID=MsG0580029703.01;Name=MsG0580029703.01
Chr5 mRNA 100975175 100978149 100975175 ID=MsG0580029703.01.T01;Parent=MsG0580029703.01;Name=MsG0580029703.01.T01;_AED=0.48;_eAED=0.55;_QI=0|0.66|0.75|1|1|1|4|199|212
Chr5 exon 100975175 100975291 100975175 ID=MsG0580029703.01.T01:exon:36654;Parent=MsG0580029703.01.T01
Chr5 exon 100976124 100976239 100976124 ID=MsG0580029703.01.T01:exon:36655;Parent=MsG0580029703.01.T01
Chr5 exon 100976348 100976411 100976348 ID=MsG0580029703.01.T01:exon:36656;Parent=MsG0580029703.01.T01
Chr5 exon 100977609 100978149 100977609 ID=MsG0580029703.01.T01:exon:36657;Parent=MsG0580029703.01.T01
Chr5 CDS 100975175 100975291 100975175 ID=MsG0580029703.01.T01:cds;Parent=MsG0580029703.01.T01
Chr5 CDS 100976124 100976239 100976124 ID=MsG0580029703.01.T01:cds;Parent=MsG0580029703.01.T01
Chr5 CDS 100976348 100976411 100976348 ID=MsG0580029703.01.T01:cds;Parent=MsG0580029703.01.T01
Chr5 CDS 100977609 100977950 100977609 ID=MsG0580029703.01.T01:cds;Parent=MsG0580029703.01.T01
Chr5 three_prime_UTR 100977951 100978149 100977951 ID=MsG0580029703.01.T01:three_prime_utr;Parent=MsG0580029703.01.T01
Gene Sequence

>MsG0580029703.01.T01

ATGAACGACGGTGTTGATGATGAGATTGAAGATTCTGGAAACTATTTCCACAGAAAAATGGGTTTGGAGTACAACTCACAGAAACTATTTCCACAACAAAATGGTTTTGGCATTCCGTTTCACCAGTACCAGGTTGTCGGAAGGGCTCTTCCCACCGAAAAGGATGAACATCCTAAGATTTATCGTATGAAGCTTTGGGCAACCAATGAGGTTCGTGCCAAATCCAAATTCTGGTATTTCTTAAGGAAGTTGAAGAAGGTTAAGAAAAGCAATGGACAAGTTTTGGCAATCAATGAGATCTTTGAGAAAAATCCTACCAAGATTAAGAACTATGGAATTTGGTTGCGTTATCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGTGATACTACTCTAAACGGTGCTGTGGAGACAATGTACAACGAAATGGCATCTCGTCATAGGGTCAGGTTTCCTTGCATCCAGATCATTAAGACAGCCACCATCCCGGCTAATCTGTGCAAAAGGGAGAGCACTAAGCAGTTTCACAATTCCAAAATCAAGTTCCCTCTGGTGTACAAGAAGATTAGGCCACCAACTAGGAGCCTAAAAACAACCTACAAAGCCAAGAAGCCCAACCTGTTTATGTGA
Protein sequence

>MsG0580029703.01.T01

MNDGVDDEIEDSGNYFHRKMGLEYNSQKLFPQQNGFGIPFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCIQIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM*