AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013844.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013844.01.T01 MTR_3g051120 60.208 289 40 4 2 289 174 388 1.59e-107 318
MsG0380013844.01.T01 MTR_3g049410 60.554 289 39 5 2 289 228 442 1.41e-104 313
MsG0380013844.01.T01 MTR_5g005670 68.456 149 47 0 7 155 233 381 2.65e-67 217
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013844.01.T01 AT5G54810 60.554 289 39 5 2 289 232 446 4.66e-107 319
MsG0380013844.01.T01 AT4G27070 90.667 150 14 0 2 151 237 386 2.09e-96 292
MsG0380013844.01.T01 AT4G27070 58.025 81 17 2 210 289 387 451 1.97e-19 88.6
MsG0380013844.01.T01 AT5G28237 66.447 152 48 1 13 164 234 382 5.34e-68 218
MsG0380013844.01.T01 AT5G28237 66.447 152 48 1 13 164 234 382 1.16e-67 218

Find 128 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAACAACTCATTACATTT+TGG 0.139840 3:-46472604 MsG0380013844.01.T01:CDS
CTTGTTGTATGCTTAGTATT+TGG 0.165393 3:+46476167 None:intergenic
TGAACATGATCAAAATATTA+AGG 0.218666 3:-46476361 MsG0380013844.01.T01:five_prime_UTR
GCTTTGCTTGCCAAGAAATT+AGG 0.235803 3:-46473579 MsG0380013844.01.T01:five_prime_UTR
TTGTTGTATGCTTAGTATTT+GGG 0.312548 3:+46476168 None:intergenic
TCTCTTACCATCATTGGATA+TGG 0.327330 3:+46472561 None:intergenic
TAACCACAACCTTGTCCATT+AGG 0.330379 3:+46470594 None:intergenic
CATGTTCTTGTATTGAATAA+TGG 0.339384 3:-46470508 MsG0380013844.01.T01:three_prime_UTR
GACAGTGATGTTAGGCTAAT+TGG 0.341516 3:-46472408 MsG0380013844.01.T01:CDS
AAGCGCATTATTGCTGAAAC+TGG 0.344867 3:-46473552 MsG0380013844.01.T01:five_prime_UTR
CACTGTCATCAACGAATTCA+TGG 0.351888 3:+46472424 None:intergenic
GGAAAGGGGCCCTAGTAATA+TGG 0.354279 3:-46472182 MsG0380013844.01.T01:CDS
GGTGTGGAAGCTGCTGGCTT+TGG 0.361190 3:-46472387 MsG0380013844.01.T01:CDS
AAGAGCTGGCTGGGATTCTA+AGG 0.361869 3:-46473751 MsG0380013844.01.T01:five_prime_UTR
TTTCAACTAGGATCCGATCT+TGG 0.364414 3:-46472121 MsG0380013844.01.T01:CDS
CTCCTTGATTCGACTTTACC+TGG 0.365145 3:-46472095 MsG0380013844.01.T01:CDS
TATTACATGATTGCAGATAT+AGG 0.369095 3:-46471887 MsG0380013844.01.T01:intron
GACCAGACTTTAAATACCTT+GGG 0.374611 3:+46472151 None:intergenic
GTAATGTTAACCGGTGTTCC+CGG 0.374845 3:-46476338 MsG0380013844.01.T01:five_prime_UTR
GGGCCAAACTCCATATTACT+AGG 0.383303 3:+46472172 None:intergenic
CTTCCATACATTTAACGTTA+AGG 0.384282 3:+46476116 None:intergenic
GGCCCTAGTAATATGGAGTT+TGG 0.392585 3:-46472175 MsG0380013844.01.T01:CDS
ACACATGCAATCAGAATATC+TGG 0.395346 3:+46472477 None:intergenic
TGTTCAAAGCTTCAAGTACT+TGG 0.395878 3:+46470535 None:intergenic
TGAAACTCTCTTACCATCAT+TGG 0.398568 3:+46472555 None:intergenic
AGTATTTGGGTCATGTTAAC+CGG 0.398968 3:+46476181 None:intergenic
TGCTGGAACTGCTACACTTA+AGG 0.400395 3:-46472667 MsG0380013844.01.T01:CDS
ATATGTCCAACCCTTCCTAA+TGG 0.401790 3:-46470609 MsG0380013844.01.T01:CDS
GGTCATGTTAACCGGTGCCC+CGG 0.407891 3:+46476189 None:intergenic
GCCCCAAGGTATTTAAAGTC+TGG 0.414818 3:-46472153 MsG0380013844.01.T01:CDS
TTGAAGCATCATTCCAGCTC+TGG 0.421427 3:-46470662 MsG0380013844.01.T01:CDS
AGAGAGTTTCATGCTGTGAT+TGG 0.426830 3:-46472543 MsG0380013844.01.T01:CDS
TCGTTGATGACAGTGATGTT+AGG 0.428209 3:-46472416 MsG0380013844.01.T01:CDS
TTCAACTAGGATCCGATCTT+GGG 0.441245 3:-46472120 MsG0380013844.01.T01:CDS
GAACATGATCAAAATATTAA+GGG 0.447963 3:-46476360 MsG0380013844.01.T01:five_prime_UTR
AACCGGTGTTCCCGGGGCAC+TGG 0.448645 3:-46476330 MsG0380013844.01.T01:five_prime_UTR
GGAAACAAGAAAGCAAGCTT+TGG 0.456271 3:-46472517 MsG0380013844.01.T01:CDS
GTCATGTTAACCGGTGCCCC+GGG 0.456650 3:+46476190 None:intergenic
AAACAGAAGATTATTAAAGC+TGG 0.456724 3:+46470377 None:intergenic
CATCAGAGGCTATTAGAGAC+TGG 0.462462 3:-46472638 MsG0380013844.01.T01:CDS
CTTCCTAATGGACAAGGTTG+TGG 0.465125 3:-46470597 MsG0380013844.01.T01:CDS
ATATTAAGGGTAATGTTAAC+CGG 0.469120 3:-46476347 MsG0380013844.01.T01:five_prime_UTR
TAACCAGTGCCCCGGGGCAC+CGG 0.471607 3:-46476200 MsG0380013844.01.T01:intron
TTCTAAGGACTATGTTGGTC+GGG 0.478268 3:-46473736 MsG0380013844.01.T01:five_prime_UTR
TAATGTTAACCGGTGTTCCC+GGG 0.480910 3:-46476337 MsG0380013844.01.T01:five_prime_UTR
AGTTCCTTAACCAGTGCCCC+GGG 0.483356 3:-46476207 MsG0380013844.01.T01:intron
GCTCTGGGACATCCCATGCT+TGG 0.486290 3:-46470646 MsG0380013844.01.T01:CDS
GAGCCTCACTCTATTAGTGC+AGG 0.490963 3:-46472261 MsG0380013844.01.T01:CDS
TTCTCTAGATACGCCAAGCA+TGG 0.494377 3:+46470633 None:intergenic
GAGCATTACAAGAACGCTAA+TGG 0.497923 3:-46473681 MsG0380013844.01.T01:five_prime_UTR
CTAATTGGTGTGGAAGCTGC+TGG 0.501417 3:-46472393 MsG0380013844.01.T01:CDS
TGACCAGACTTTAAATACCT+TGG 0.501678 3:+46472150 None:intergenic
AGCATGGGATGTCCCAGAGC+TGG 0.502745 3:+46470649 None:intergenic
CTATGTTCAGGTCCGACACC+AGG 0.504791 3:+46471998 None:intergenic
CATACATTTAACGTTAAGGT+TGG 0.505327 3:+46476120 None:intergenic
CGGTGGAGGTTCAAATGCCA+TGG 0.509416 3:-46472454 MsG0380013844.01.T01:CDS
CCTTGTCCATTAGGAAGGGT+TGG 0.510692 3:+46470603 None:intergenic
CACAACCTTGTCCATTAGGA+AGG 0.510777 3:+46470598 None:intergenic
CCATGATTCACAATCCATCA+TGG 0.512794 3:+46470257 None:intergenic
AAGTTCCTTAACCAGTGCCC+CGG 0.519483 3:-46476208 MsG0380013844.01.T01:intron
AATTGCAGAAAGAGCTGGCT+GGG 0.522346 3:-46473760 MsG0380013844.01.T01:intron
AACCTTTCCGCAAAATAAAG+AGG 0.525534 3:+46473708 None:intergenic
CATCACTGATGATGAAGCAT+TGG 0.525683 3:-46471939 MsG0380013844.01.T01:CDS
CAGTTTGAAATCTTTCACCT+CGG 0.537399 3:+46470561 None:intergenic
ATGATGAAGCATTGGAAGGT+AGG 0.538289 3:-46471931 MsG0380013844.01.T01:CDS
AGCTATGAGCTATCTGCTGC+AGG 0.544681 3:-46472304 MsG0380013844.01.T01:CDS
GTAGCAGTTCCAGCATGGAC+TGG 0.548889 3:+46472675 None:intergenic
CTGAAACTGGAGCTGGACAA+TGG 0.549008 3:-46473539 MsG0380013844.01.T01:five_prime_UTR
GGGAAGATCTTAACCACACC+GGG 0.549351 3:-46473632 MsG0380013844.01.T01:five_prime_UTR
ATTCTAAGGACTATGTTGGT+CGG 0.551085 3:-46473737 MsG0380013844.01.T01:five_prime_UTR
CTGATTGCATGTGTCGGTGG+AGG 0.552969 3:-46472468 MsG0380013844.01.T01:CDS
TAGGTGAGACCAGTCCATGC+TGG 0.554025 3:-46472684 MsG0380013844.01.T01:CDS
TGAAGCATCATTCCAGCTCT+GGG 0.554178 3:-46470661 MsG0380013844.01.T01:CDS
TCTCTAGATACGCCAAGCAT+GGG 0.554813 3:+46470634 None:intergenic
ACCATCATTGGATATGGATG+CGG 0.558386 3:+46472567 None:intergenic
CTACTGCTACTGTATGTGCT+CGG 0.564368 3:-46473511 MsG0380013844.01.T01:intron
CGGCATGCTTGCCACTGTTG+AGG 0.567087 3:+46472364 None:intergenic
TAATATGGAGTTTGGCCCCA+AGG 0.569001 3:-46472167 MsG0380013844.01.T01:CDS
ATTGTTAATCTTATGAGCCC+CGG 0.570924 3:+46473614 None:intergenic
AAATTGCAGAAAGAGCTGGC+TGG 0.571210 3:-46473761 MsG0380013844.01.T01:intron
AGCCAGGTAAAGTCGAATCA+AGG 0.574136 3:+46472093 None:intergenic
ACCGCATCCATATCCAATGA+TGG 0.574471 3:-46472568 MsG0380013844.01.T01:CDS
GTGGTTAACTTCAGTGGCCG+AGG 0.575027 3:-46470578 MsG0380013844.01.T01:exon
AAGGTTGTGGTTAACTTCAG+TGG 0.577283 3:-46470584 MsG0380013844.01.T01:exon
ATCAGAGGCTATTAGAGACT+GGG 0.577564 3:-46472637 MsG0380013844.01.T01:CDS
AGCTTGGACTACCCTGGTGT+CGG 0.578843 3:-46472010 MsG0380013844.01.T01:CDS
GCTGGCTTTGGCCTCAACAG+TGG 0.578878 3:-46472375 MsG0380013844.01.T01:CDS
ATTATTGCTGAAACTGGAGC+TGG 0.582219 3:-46473546 MsG0380013844.01.T01:five_prime_UTR
ATAATGGTTTAGCTGCTGAA+TGG 0.582425 3:-46470492 MsG0380013844.01.T01:three_prime_UTR
GACCTCACATTTATCTGAAG+AGG 0.584547 3:-46473653 MsG0380013844.01.T01:five_prime_UTR
AACCAGTGCCCCGGGAACAC+CGG 0.584978 3:+46476328 None:intergenic
CTAAATCTAAATCATCAGCC+AGG 0.586005 3:+46472077 None:intergenic
TACAAGAACGCTAATGGTGA+AGG 0.587462 3:-46473675 MsG0380013844.01.T01:five_prime_UTR
ACCTCACATTTATCTGAAGA+GGG 0.589104 3:-46473652 MsG0380013844.01.T01:five_prime_UTR
TGGGATTCTAAGGACTATGT+TGG 0.589978 3:-46473741 MsG0380013844.01.T01:five_prime_UTR
TGGTTTAGCTGCTGAATGGT+TGG 0.598670 3:-46470488 MsG0380013844.01.T01:three_prime_UTR
CATGATTCACAATCCATCAT+GGG 0.599859 3:+46470258 None:intergenic
ACGTTGACGAAGGGAGAAGT+TGG 0.601188 3:-46472339 MsG0380013844.01.T01:CDS
TTCTCCCTTCGTCAACGTAG+CGG 0.601580 3:+46472344 None:intergenic
AATGTTAACCGGTGTTCCCG+GGG 0.606059 3:-46476336 MsG0380013844.01.T01:five_prime_UTR
TATCTGCTGCAGGATGATGA+TGG 0.608415 3:-46472294 MsG0380013844.01.T01:CDS
GTTTCATGCTGTGATTGGCA+AGG 0.609226 3:-46472538 MsG0380013844.01.T01:CDS
AGTGCTATATGAGCCCATGA+TGG 0.610444 3:-46470271 MsG0380013844.01.T01:three_prime_UTR
AATCAAGGAGTACCCAAGAT+CGG 0.612366 3:+46472108 None:intergenic
GGCCAAACTCCATATTACTA+GGG 0.615748 3:+46472173 None:intergenic
GGTGGAGGTTCAAATGCCAT+GGG 0.619678 3:-46472453 MsG0380013844.01.T01:CDS
TAAGTGTAGCAGTTCCAGCA+TGG 0.623421 3:+46472670 None:intergenic
CCAACCCTTCCTAATGGACA+AGG 0.625459 3:-46470603 MsG0380013844.01.T01:CDS
ACTGATGATGAAGCATTGGA+AGG 0.627531 3:-46471935 MsG0380013844.01.T01:CDS
ACAACCTTGTCCATTAGGAA+GGG 0.629633 3:+46470599 None:intergenic
GCATGCCGCTACGTTGACGA+AGG 0.630697 3:-46472349 MsG0380013844.01.T01:CDS
AGCCTCACTCTATTAGTGCA+GGG 0.631586 3:-46472260 MsG0380013844.01.T01:intron
AGTACTTGAAGCTTTGAACA+AGG 0.632860 3:-46470532 MsG0380013844.01.T01:three_prime_UTR
AGGGAAGATCTTAACCACAC+CGG 0.636647 3:-46473633 MsG0380013844.01.T01:five_prime_UTR
TAATCTTATGAGCCCCGGTG+TGG 0.637824 3:+46473619 None:intergenic
GAATTCATGGAAAAGTCCCA+TGG 0.641266 3:+46472437 None:intergenic
ACCAGACTTTAAATACCTTG+GGG 0.645934 3:+46472152 None:intergenic
ACTTAAGGATGCTACATCAG+AGG 0.648351 3:-46472652 MsG0380013844.01.T01:CDS
TGATGTTAGGCTAATTGGTG+TGG 0.654843 3:-46472403 MsG0380013844.01.T01:CDS
TACCCTGCACTAATAGAGTG+AGG 0.656419 3:+46472258 None:intergenic
CATGCCGCTACGTTGACGAA+GGG 0.663219 3:-46472348 MsG0380013844.01.T01:CDS
TATGTTCAGGTCCGACACCA+GGG 0.663453 3:+46471999 None:intergenic
ATTCTGATTGCATGTGTCGG+TGG 0.667659 3:-46472471 MsG0380013844.01.T01:CDS
TCCCTCTTCAGATAAATGTG+AGG 0.679364 3:+46473651 None:intergenic
GATATTCTGATTGCATGTGT+CGG 0.681651 3:-46472474 MsG0380013844.01.T01:CDS
TCATGTTAACCGGTGCCCCG+GGG 0.697568 3:+46476191 None:intergenic
GTTCCTTAACCAGTGCCCCG+GGG 0.736742 3:-46476206 MsG0380013844.01.T01:intron
GGAAGATCTTAACCACACCG+GGG 0.811954 3:-46473631 MsG0380013844.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAAATAAAATTCAC+AGG - Chr3:46470867-46470886 MsG0380013844.01.T01:intron 10.0%
!! TCTTGAAATAAAAAAAAAAA+TGG - Chr3:46473295-46473314 MsG0380013844.01.T01:intron 10.0%
!! TTATAATACTTATAAAAATC+GGG + Chr3:46470587-46470606 None:intergenic 10.0%
!! AAAAAAAACAAATCTAACAA+TGG - Chr3:46471571-46471590 MsG0380013844.01.T01:intron 15.0%
!! AAAAAGATACTAGAAATAAA+TGG + Chr3:46475213-46475232 None:intergenic 15.0%
!! AAAATGACATTAACATATTT+AGG + Chr3:46472437-46472456 None:intergenic 15.0%
!! AAATGACATTAACATATTTA+GGG + Chr3:46472436-46472455 None:intergenic 15.0%
!! AATACACAAAAACAAAATTT+AGG + Chr3:46471046-46471065 None:intergenic 15.0%
!! ATTACAAATACTAAAAGTAA+TGG + Chr3:46473730-46473749 None:intergenic 15.0%
!! ATTTATTTGTAAAAAAAGCT+TGG - Chr3:46473792-46473811 MsG0380013844.01.T01:intron 15.0%
!! TATATATATAAGGAATAAGA+AGG - Chr3:46475767-46475786 MsG0380013844.01.T01:intron 15.0%
!! TATATATATATATTTCCCTT+AGG + Chr3:46475753-46475772 None:intergenic 15.0%
!! TCATATAAAAAAATTGCAAA+AGG - Chr3:46470542-46470561 MsG0380013844.01.T01:three_prime_UTR 15.0%
!! TTAATCTATTCAATTGTTAA+AGG + Chr3:46471101-46471120 None:intergenic 15.0%
!! TTACAAATACTAAAAGTAAT+GGG + Chr3:46473729-46473748 None:intergenic 15.0%
!! TTTCAAGAAAATTTAGATAA+AGG + Chr3:46475535-46475554 None:intergenic 15.0%
!!! ACATTTTATATGATGAAAAT+TGG + Chr3:46475821-46475840 None:intergenic 15.0%
!!! ATCTAAATTTTCTTGAAAAA+TGG - Chr3:46475537-46475556 MsG0380013844.01.T01:intron 15.0%
!!! CAATTTTTTTTATTTTGTGA+AGG - Chr3:46471933-46471952 MsG0380013844.01.T01:CDS 15.0%
!!! CATTAACTCATTTTTTTTAA+AGG + Chr3:46473330-46473349 None:intergenic 15.0%
!!! CTGATAAATTTTTATTTGTT+TGG - Chr3:46474403-46474422 MsG0380013844.01.T01:intron 15.0%
!! AAGTCAATTATATATAGAGA+GGG - Chr3:46472601-46472620 MsG0380013844.01.T01:CDS 20.0%
!! ATAAATTAGATTAGAGTAAC+TGG + Chr3:46475903-46475922 None:intergenic 20.0%
!! ATATGTACAACAAAATAACA+AGG + Chr3:46472519-46472538 None:intergenic 20.0%
!! GAAATTAGGATATTATCATT+TGG - Chr3:46475614-46475633 MsG0380013844.01.T01:intron 20.0%
!! GAACATGATCAAAATATTAA+GGG - Chr3:46470269-46470288 MsG0380013844.01.T01:three_prime_UTR 20.0%
!! GTAAAACTTATACAGAATAA+GGG + Chr3:46475284-46475303 None:intergenic 20.0%
!! GTATGGAAAAAATATGAAAA+CGG + Chr3:46472359-46472378 None:intergenic 20.0%
!! TACAAATACTAAAAGTAATG+GGG + Chr3:46473728-46473747 None:intergenic 20.0%
!! TCAGTATATGATGATTTAAT+GGG - Chr3:46475561-46475580 MsG0380013844.01.T01:intron 20.0%
!! TCTAAATTATAACGTATCAA+AGG - Chr3:46471008-46471027 MsG0380013844.01.T01:intron 20.0%
!! TCTCTATCCAAAAATAAAAT+GGG + Chr3:46471425-46471444 None:intergenic 20.0%
!! TGAACATGATCAAAATATTA+AGG - Chr3:46470268-46470287 MsG0380013844.01.T01:three_prime_UTR 20.0%
!! TGTAAAACTTATACAGAAAA+AGG + Chr3:46474978-46474997 None:intergenic 20.0%
!! TGTAAAACTTATACAGAATA+AGG + Chr3:46475285-46475304 None:intergenic 20.0%
!! TTATATGATGAAAATTGGAA+AGG + Chr3:46475816-46475835 None:intergenic 20.0%
!! TTATGAATTAAGCTGAAAAA+AGG - Chr3:46472314-46472333 MsG0380013844.01.T01:CDS 20.0%
!! TTCAGTATATGATGATTTAA+TGG - Chr3:46475560-46475579 MsG0380013844.01.T01:intron 20.0%
!! TTGATACGTTATAATTTAGA+AGG + Chr3:46471008-46471027 None:intergenic 20.0%
!! TTGGAATGCATTATTTATAT+GGG - Chr3:46473147-46473166 MsG0380013844.01.T01:intron 20.0%
!!! AAAAATATTGTTTTGTAGCT+TGG - Chr3:46474603-46474622 MsG0380013844.01.T01:intron 20.0%
!!! AATTGTTATTGTTGTTCATT+TGG - Chr3:46473238-46473257 MsG0380013844.01.T01:intron 20.0%
!!! AGATAGTATTCTTCTTATTT+TGG + Chr3:46471390-46471409 None:intergenic 20.0%
!!! ATAAAGGTACTAAGAATAAA+TGG + Chr3:46475519-46475538 None:intergenic 20.0%
!!! ATTTTTTCTTTTTGCAATGT+TGG - Chr3:46472036-46472055 MsG0380013844.01.T01:CDS 20.0%
!!! GAGATAAATTGTTTTGTATA+TGG - Chr3:46472251-46472270 MsG0380013844.01.T01:intron 20.0%
!!! GATAGTATTCTTCTTATTTT+GGG + Chr3:46471389-46471408 None:intergenic 20.0%
!!! GTTATTTTGTTGTACATATT+TGG - Chr3:46472520-46472539 MsG0380013844.01.T01:CDS 20.0%
!!! GTTTTTGTTGATTATTTTGT+TGG - Chr3:46472001-46472020 MsG0380013844.01.T01:CDS 20.0%
!!! TATAGTTTGGAATTTATATG+TGG + Chr3:46471475-46471494 None:intergenic 20.0%
!!! TTAATTGATTTTGATGTTGT+TGG + Chr3:46471538-46471557 None:intergenic 20.0%
!!! TTCATTACCCATTTTATTTT+TGG - Chr3:46471415-46471434 MsG0380013844.01.T01:intron 20.0%
!!! TTTATTTTGGTCAATGAATT+TGG + Chr3:46470636-46470655 None:intergenic 20.0%
!!! TTTGGAATGCATTATTTATA+TGG - Chr3:46473146-46473165 MsG0380013844.01.T01:intron 20.0%
!!! TTTTTAGTGTTGTTAAATAG+TGG - Chr3:46475406-46475425 MsG0380013844.01.T01:intron 20.0%
!!! TTTTTTCTTTTTGCAATGTT+GGG - Chr3:46472037-46472056 MsG0380013844.01.T01:CDS 20.0%
! AAACAGAAGATTATTAAAGC+TGG + Chr3:46476255-46476274 None:intergenic 25.0%
! ACATAAAAGACAGTAATTGT+TGG + Chr3:46475658-46475677 None:intergenic 25.0%
! ACGATAACAACTTAAGAAAA+TGG + Chr3:46473460-46473479 None:intergenic 25.0%
! AGGTAAAAGGTTATATAGTT+TGG + Chr3:46471488-46471507 None:intergenic 25.0%
! AGTAATTGATTGTTGAAATG+TGG - Chr3:46472115-46472134 MsG0380013844.01.T01:CDS 25.0%
! ATATTAAGGGTAATGTTAAC+CGG - Chr3:46470282-46470301 MsG0380013844.01.T01:three_prime_UTR 25.0%
! ATCAATTACACGAATAACAT+AGG + Chr3:46474934-46474953 None:intergenic 25.0%
! ATGTGAAATATAAGTCCTAA+GGG - Chr3:46475735-46475754 MsG0380013844.01.T01:intron 25.0%
! CATGATTTCATATGAATTGA+AGG - Chr3:46473367-46473386 MsG0380013844.01.T01:intron 25.0%
! CATGTTCTTGTATTGAATAA+TGG - Chr3:46476121-46476140 MsG0380013844.01.T01:intron 25.0%
! GAAGTCAATTATATATAGAG+AGG - Chr3:46472600-46472619 MsG0380013844.01.T01:CDS 25.0%
! GTCTCTATCCAAAAATAAAA+TGG + Chr3:46471426-46471445 None:intergenic 25.0%
! TAACATTCAACGTACAAAAT+AGG - Chr3:46471118-46471137 MsG0380013844.01.T01:intron 25.0%
! TATTACATGATTGCAGATAT+AGG - Chr3:46474742-46474761 MsG0380013844.01.T01:intron 25.0%
! TCGACTTAATGATAAGAATA+AGG + Chr3:46470923-46470942 None:intergenic 25.0%
! TGTATAAAGTGTAAATTCCA+TGG - Chr3:46474778-46474797 MsG0380013844.01.T01:intron 25.0%
! TGTATACTATATTTAGTCTC+TGG - Chr3:46473270-46473289 MsG0380013844.01.T01:intron 25.0%
! TTGTTGTATGCTTAGTATTT+GGG + Chr3:46470464-46470483 None:intergenic 25.0%
!! ACATGATTTTATTGGATCAA+CGG + Chr3:46470714-46470733 None:intergenic 25.0%
!! GAAACAACTCATTACATTTT+GGG - Chr3:46474026-46474045 MsG0380013844.01.T01:intron 25.0%
!! TAAGGTATTTGATGGAAAAT+GGG + Chr3:46471665-46471684 None:intergenic 25.0%
!! TGAAACAACTCATTACATTT+TGG - Chr3:46474025-46474044 MsG0380013844.01.T01:intron 25.0%
!! TTAAGGTATTTGATGGAAAA+TGG + Chr3:46471666-46471685 None:intergenic 25.0%
!! TTCTAAGTGTTGTTAAATAG+TGG - Chr3:46475099-46475118 MsG0380013844.01.T01:intron 25.0%
!!! AATGAATTTGGTTTGATAGT+GGG + Chr3:46470624-46470643 None:intergenic 25.0%
!!! AGGTAAGATTTCCTTTTTTT+AGG - Chr3:46470887-46470906 MsG0380013844.01.T01:intron 25.0%
!!! AGTTTTATTTGTTGACTGTT+TGG - Chr3:46472157-46472176 MsG0380013844.01.T01:CDS 25.0%
!!! ATTTTGTTGTACATATTTGG+TGG - Chr3:46472523-46472542 MsG0380013844.01.T01:CDS 25.0%
!!! GGTAAGATTTCCTTTTTTTA+GGG - Chr3:46470888-46470907 MsG0380013844.01.T01:intron 25.0%
!!! GTAAGATTTCCTTTTTTTAG+GGG - Chr3:46470889-46470908 MsG0380013844.01.T01:intron 25.0%
!!! GTTGATTATTTTGTTGGATT+TGG - Chr3:46472007-46472026 MsG0380013844.01.T01:CDS 25.0%
!!! TAACACTTTTTATGCTTTTG+AGG + Chr3:46470375-46470394 None:intergenic 25.0%
!!! TAAGATTTCCTTTTTTTAGG+GGG - Chr3:46470890-46470909 MsG0380013844.01.T01:intron 25.0%
!!! TTGAACAACCACTATTTTTA+TGG - Chr3:46475467-46475486 MsG0380013844.01.T01:intron 25.0%
AAATAGTGGCTATAACATAG+CGG - Chr3:46475344-46475363 MsG0380013844.01.T01:intron 30.0%
AACTTATACAGAAAAAGGCA+AGG + Chr3:46474973-46474992 None:intergenic 30.0%
ACCAAATCATGACAACTAAA+AGG + Chr3:46474812-46474831 None:intergenic 30.0%
AGAAAATGGAAGTGATTGAA+AGG + Chr3:46473446-46473465 None:intergenic 30.0%
AGACAAAGATGCAAACTTTA+AGG + Chr3:46471683-46471702 None:intergenic 30.0%
AGTGACTCAAAAAACTTATG+AGG + Chr3:46471254-46471273 None:intergenic 30.0%
CAACCTTAACGTTAAATGTA+TGG - Chr3:46470510-46470529 MsG0380013844.01.T01:three_prime_UTR 30.0%
CATACATTTAACGTTAAGGT+TGG + Chr3:46470512-46470531 None:intergenic 30.0%
CATGTAAAAATTGGTTGAGA+AGG - Chr3:46471212-46471231 MsG0380013844.01.T01:intron 30.0%
CATGTGAAATATAAGTCCTA+AGG - Chr3:46475734-46475753 MsG0380013844.01.T01:intron 30.0%
CATTTCATGAAAAACCAAAG+AGG + Chr3:46472476-46472495 None:intergenic 30.0%
CTTCCATACATTTAACGTTA+AGG + Chr3:46470516-46470535 None:intergenic 30.0%
GTGACTCAAAAAACTTATGA+GGG + Chr3:46471253-46471272 None:intergenic 30.0%
TCAGTAGATAAGCTCAAATA+AGG - Chr3:46472397-46472416 MsG0380013844.01.T01:CDS 30.0%
TCTTTCAAAAAGCTATGTTC+AGG + Chr3:46474646-46474665 None:intergenic 30.0%
TGACACTCACATGTAAAAAT+TGG - Chr3:46471203-46471222 MsG0380013844.01.T01:intron 30.0%
TTATATATAGAGAGGGATCA+AGG - Chr3:46472608-46472627 MsG0380013844.01.T01:CDS 30.0%
TTGATGGAAAATGGGAAAAT+GGG + Chr3:46471657-46471676 None:intergenic 30.0%
TTGTTCAAATGAATCCTCTT+TGG - Chr3:46472459-46472478 MsG0380013844.01.T01:CDS 30.0%
TTTGATGGAAAATGGGAAAA+TGG + Chr3:46471658-46471677 None:intergenic 30.0%
! ATAAGTTTTACACAACGATG+TGG - Chr3:46474986-46475005 MsG0380013844.01.T01:intron 30.0%
! ATAGTTTTTGTGAGACTGTA+TGG + Chr3:46472376-46472395 None:intergenic 30.0%
! CTTGTTGTATGCTTAGTATT+TGG + Chr3:46470465-46470484 None:intergenic 30.0%
! TAACATATTTAGGGCATGTT+TGG + Chr3:46472427-46472446 None:intergenic 30.0%
! TGGAATTTATATGTGGACTA+TGG + Chr3:46471468-46471487 None:intergenic 30.0%
! TTTTAAATTGCAGAAAGAGC+TGG - Chr3:46472864-46472883 MsG0380013844.01.T01:intron 30.0%
! TTTTAACCCTCTGTTTTCAA+GGG - Chr3:46474426-46474445 MsG0380013844.01.T01:intron 30.0%
! TTTTGATGTTGTTGGATGAT+TGG + Chr3:46471530-46471549 None:intergenic 30.0%
!! AAAGCAAGCTTTGGAAAAAT+GGG - Chr3:46474121-46474140 MsG0380013844.01.T01:intron 30.0%
!! AATAGCGGACCATAAAAATA+GGG + Chr3:46475172-46475191 None:intergenic 30.0%
!! ACATAGCTTTTTGAAAGACT+TGG - Chr3:46474648-46474667 MsG0380013844.01.T01:intron 30.0%
!! ATAGCTTTTTGAAAGACTTG+GGG - Chr3:46474650-46474669 MsG0380013844.01.T01:intron 30.0%
!! CAATGAATTTGGTTTGATAG+TGG + Chr3:46470625-46470644 None:intergenic 30.0%
!! CATAGCTTTTTGAAAGACTT+GGG - Chr3:46474649-46474668 MsG0380013844.01.T01:intron 30.0%
!! GCAAACTTTAAGGTATTTGA+TGG + Chr3:46471673-46471692 None:intergenic 30.0%
!! TTGGTTTGTTCTTTGGAAAT+GGG + Chr3:46471634-46471653 None:intergenic 30.0%
!!! CTTTGGTTTTTCATGAAATG+AGG - Chr3:46472476-46472495 MsG0380013844.01.T01:CDS 30.0%
!!! GCACTACTGTTGTTTTATTT+TGG + Chr3:46470649-46470668 None:intergenic 30.0%
!!! TGAACAAACCCCTATTTTTA+TGG - Chr3:46475160-46475179 MsG0380013844.01.T01:intron 30.0%
!!! TGGTCAACATTTTTTCAACT+AGG - Chr3:46474496-46474515 MsG0380013844.01.T01:intron 30.0%
AAAATCGGGAAACCTTATTG+TGG + Chr3:46470573-46470592 None:intergenic 35.0%
AAAGGCAAGGAAAAACTTAC+AGG + Chr3:46474960-46474979 None:intergenic 35.0%
AAATAGTGGCTATAGCATAG+CGG - Chr3:46475035-46475054 MsG0380013844.01.T01:intron 35.0%
AACCTTTCCGCAAAATAAAG+AGG + Chr3:46472924-46472943 None:intergenic 35.0%
ACACATGCAATCAGAATATC+TGG + Chr3:46474155-46474174 None:intergenic 35.0%
ACAGCTTATTTGCAGCTTAT+AGG - Chr3:46472184-46472203 MsG0380013844.01.T01:CDS 35.0%
ACATCAATTGCAAGCTGTAA+TGG + Chr3:46473586-46473605 None:intergenic 35.0%
ACCAGACTTTAAATACCTTG+GGG + Chr3:46474480-46474499 None:intergenic 35.0%
ACCTCACATTTATCTGAAGA+GGG - Chr3:46472977-46472996 MsG0380013844.01.T01:intron 35.0%
ACTTATACAGAATAAGGGCA+AGG + Chr3:46475279-46475298 None:intergenic 35.0%
AGAGAAGAATGAGAGGTAAA+AGG + Chr3:46471501-46471520 None:intergenic 35.0%
AGTATTTGGGTCATGTTAAC+CGG + Chr3:46470451-46470470 None:intergenic 35.0%
ATAATGGTTTAGCTGCTGAA+TGG - Chr3:46476137-46476156 MsG0380013844.01.T01:five_prime_UTR 35.0%
ATCAATAGTTCAAGCAACAG+AGG + Chr3:46472567-46472586 None:intergenic 35.0%
ATGCCAATGAAAAGGAAGAA+AGG + Chr3:46474836-46474855 None:intergenic 35.0%
ATTGTTAATCTTATGAGCCC+CGG + Chr3:46473018-46473037 None:intergenic 35.0%
CAAAAGGAAACACCACAATA+AGG - Chr3:46470558-46470577 MsG0380013844.01.T01:three_prime_UTR 35.0%
CTAAATCTAAATCATCAGCC+AGG + Chr3:46474555-46474574 None:intergenic 35.0%
CTTGTAGACATGTGATTTGA+TGG - Chr3:46472769-46472788 MsG0380013844.01.T01:intron 35.0%
GACCAGACTTTAAATACCTT+GGG + Chr3:46474481-46474500 None:intergenic 35.0%
GATATTCTGATTGCATGTGT+CGG - Chr3:46474155-46474174 MsG0380013844.01.T01:intron 35.0%
GCATAACTGTTGTCAAATAG+TGG - Chr3:46475021-46475040 MsG0380013844.01.T01:intron 35.0%
GCTTAATTCATAAGTTCTCC+AGG + Chr3:46472307-46472326 None:intergenic 35.0%
GGACTATGGTGATATGATAT+GGG + Chr3:46471454-46471473 None:intergenic 35.0%
GTATCTGAATCCTGTGATAT+AGG - Chr3:46473926-46473945 MsG0380013844.01.T01:intron 35.0%
GTCATATAGTGTGTCAATAG+CGG + Chr3:46475494-46475513 None:intergenic 35.0%
TCAATAGTTCAAGCAACAGA+GGG + Chr3:46472566-46472585 None:intergenic 35.0%
TCGTATAGTGTTGTCAATAG+CGG + Chr3:46475187-46475206 None:intergenic 35.0%
TCTCTTACCATCATTGGATA+TGG + Chr3:46474071-46474090 None:intergenic 35.0%
TGAAACTCTCTTACCATCAT+TGG + Chr3:46474077-46474096 None:intergenic 35.0%
TGACCAGACTTTAAATACCT+TGG + Chr3:46474482-46474501 None:intergenic 35.0%
TGGACTATGGTGATATGATA+TGG + Chr3:46471455-46471474 None:intergenic 35.0%
TGTTCAAAGCTTCAAGTACT+TGG + Chr3:46476097-46476116 None:intergenic 35.0%
TTCCATTGGAGGTTGAAAAT+GGG - Chr3:46471757-46471776 MsG0380013844.01.T01:intron 35.0%
TTGGAAATGGGTAGCAATTT+GGG + Chr3:46471622-46471641 None:intergenic 35.0%
TTTACCTCTCATTCTTCTCT+AGG - Chr3:46471501-46471520 MsG0380013844.01.T01:intron 35.0%
TTTGACTAATTGTAGCATCG+AGG - Chr3:46473754-46473773 MsG0380013844.01.T01:five_prime_UTR 35.0%
TTTGGAAATGGGTAGCAATT+TGG + Chr3:46471623-46471642 None:intergenic 35.0%
TTTGGGAGATTTGGGAAATT+TGG - Chr3:46471807-46471826 MsG0380013844.01.T01:intron 35.0%
! ATATGAATTGAAGGTGTGTC+CGG - Chr3:46473376-46473395 MsG0380013844.01.T01:intron 35.0%
! ATTCTAAGGACTATGTTGGT+CGG - Chr3:46472892-46472911 MsG0380013844.01.T01:intron 35.0%
! CAGTTTGAAATCTTTCACCT+CGG + Chr3:46476071-46476090 None:intergenic 35.0%
! CGGTCAGAACATGATTTTAT+TGG + Chr3:46470722-46470741 None:intergenic 35.0%
! GAGATTTTCCCCCTAAAAAA+AGG + Chr3:46470901-46470920 None:intergenic 35.0%
! GCATCTTTGTTTCAAAACTG+TGG - Chr3:46475848-46475867 MsG0380013844.01.T01:intron 35.0%
! GTCTTATCTAGCATTGAACA+AGG - Chr3:46473847-46473866 MsG0380013844.01.T01:intron 35.0%
! GTTCCTTTCTTCCTTTTCAT+TGG - Chr3:46474830-46474849 MsG0380013844.01.T01:intron 35.0%
! GTTGCAACAGCATAATTTTG+TGG + Chr3:46476303-46476322 None:intergenic 35.0%
! TGCTTCTGATGAAGATTTTC+AGG - Chr3:46471894-46471913 MsG0380013844.01.T01:CDS 35.0%
! TGTCTAAAGCAAGTTGCTTT+AGG - Chr3:46475592-46475611 MsG0380013844.01.T01:intron 35.0%
! TTTTTCATGAAATGAGGCGA+AGG - Chr3:46472482-46472501 MsG0380013844.01.T01:CDS 35.0%
!! AAATGGGTTGGTTTGTTCTT+TGG + Chr3:46471641-46471660 None:intergenic 35.0%
!! AAGCAAGCTTTGGAAAAATG+GGG - Chr3:46474122-46474141 MsG0380013844.01.T01:intron 35.0%
!! AAGTTTTACACTGACTGATG+TGG - Chr3:46475295-46475314 MsG0380013844.01.T01:intron 35.0%
!! AGTACTTGAAGCTTTGAACA+AGG - Chr3:46476097-46476116 MsG0380013844.01.T01:intron 35.0%
!! ATAGCGGACCATAAAAATAG+GGG + Chr3:46475171-46475190 None:intergenic 35.0%
!! ATAGCGGACCATAAAAATAG+TGG + Chr3:46475171-46475190 None:intergenic 35.0%
!! CAATAGCGGACCATAAAAAT+AGG + Chr3:46475173-46475192 None:intergenic 35.0%
!! GAAAGCAAGCTTTGGAAAAA+TGG - Chr3:46474120-46474139 MsG0380013844.01.T01:intron 35.0%
!! GCAAGTTGCTTTAGGAAATT+AGG - Chr3:46475600-46475619 MsG0380013844.01.T01:intron 35.0%
!! GCCTTTTAGTTGTCATGATT+TGG - Chr3:46474808-46474827 MsG0380013844.01.T01:intron 35.0%
!! GTTGGTTTGTTCTTTGGAAA+TGG + Chr3:46471635-46471654 None:intergenic 35.0%
!! GTTGTTTTCATAAGCTATCC+TGG - Chr3:46472286-46472305 MsG0380013844.01.T01:CDS 35.0%
!! GTTTTAACCCTCTGTTTTCA+AGG - Chr3:46474425-46474444 MsG0380013844.01.T01:intron 35.0%
AAAGTTGACATCCTAAAGCC+AGG + Chr3:46473545-46473564 None:intergenic 40.0%
AAGCGCATTATTGCTGAAAC+TGG - Chr3:46473077-46473096 MsG0380013844.01.T01:intron 40.0%
AAGGTTGTGGTTAACTTCAG+TGG - Chr3:46476045-46476064 MsG0380013844.01.T01:intron 40.0%
ACAACCTTGTCCATTAGGAA+GGG + Chr3:46476033-46476052 None:intergenic 40.0%
ACCATCATTGGATATGGATG+CGG + Chr3:46474065-46474084 None:intergenic 40.0%
ACTAAAAGGCAAGAGATCCA+TGG + Chr3:46474798-46474817 None:intergenic 40.0%
ACTTAAGGATGCTACATCAG+AGG - Chr3:46473977-46473996 MsG0380013844.01.T01:intron 40.0%
AGAGAGTTTCATGCTGTGAT+TGG - Chr3:46474086-46474105 MsG0380013844.01.T01:intron 40.0%
AGAGCATGCATAAGAGTTTC+AGG + Chr3:46471846-46471865 None:intergenic 40.0%
AGCAACAGAGGGAAGAAAAA+AGG + Chr3:46472555-46472574 None:intergenic 40.0%
ATATGTCCAACCCTTCCTAA+TGG - Chr3:46476020-46476039 MsG0380013844.01.T01:intron 40.0%
ATCAGAGGCTATTAGAGACT+GGG - Chr3:46473992-46474011 MsG0380013844.01.T01:intron 40.0%
ATGACACATGTTGGCGTTAT+CGG - Chr3:46473402-46473421 MsG0380013844.01.T01:intron 40.0%
ATTATTGCTGAAACTGGAGC+TGG - Chr3:46473083-46473102 MsG0380013844.01.T01:intron 40.0%
CACTGTCATCAACGAATTCA+TGG + Chr3:46474208-46474227 None:intergenic 40.0%
CATTATTTATATGGGCGCAC+AGG - Chr3:46473155-46473174 MsG0380013844.01.T01:intron 40.0%
CTATAGCAGCACTGTATGTA+CGG - Chr3:46475133-46475152 MsG0380013844.01.T01:intron 40.0%
CTTCCATTGGAGGTTGAAAA+TGG - Chr3:46471756-46471775 MsG0380013844.01.T01:intron 40.0%
GAATTCATGGAAAAGTCCCA+TGG + Chr3:46474195-46474214 None:intergenic 40.0%
GACAGTGATGTTAGGCTAAT+TGG - Chr3:46474221-46474240 MsG0380013844.01.T01:intron 40.0%
GACCTCACATTTATCTGAAG+AGG - Chr3:46472976-46472995 MsG0380013844.01.T01:intron 40.0%
GAGCATTACAAGAACGCTAA+TGG - Chr3:46472948-46472967 MsG0380013844.01.T01:intron 40.0%
GCACAACTATGCCAATGAAA+AGG + Chr3:46474844-46474863 None:intergenic 40.0%
GCATAACTGTCGTCAAATAG+TGG - Chr3:46475330-46475349 MsG0380013844.01.T01:intron 40.0%
GCTTTGCTTGCCAAGAAATT+AGG - Chr3:46473050-46473069 MsG0380013844.01.T01:intron 40.0%
GGAAACAAGAAAGCAAGCTT+TGG - Chr3:46474112-46474131 MsG0380013844.01.T01:intron 40.0%
GGAGATTTGGGAAATTTGGT+GGG - Chr3:46471811-46471830 MsG0380013844.01.T01:intron 40.0%
GGCCAAACTCCATATTACTA+GGG + Chr3:46474459-46474478 None:intergenic 40.0%
GTAACCTAGAGAAGAATGAG+AGG + Chr3:46471508-46471527 None:intergenic 40.0%
GTAGCAATTTGGGTGAGTTA+AGG + Chr3:46471612-46471631 None:intergenic 40.0%
TAACCACAACCTTGTCCATT+AGG + Chr3:46476038-46476057 None:intergenic 40.0%
TACAAGAACGCTAATGGTGA+AGG - Chr3:46472954-46472973 MsG0380013844.01.T01:intron 40.0%
TCCCTCTTCAGATAAATGTG+AGG + Chr3:46472981-46473000 None:intergenic 40.0%
TGATGTTAGGCTAATTGGTG+TGG - Chr3:46474226-46474245 MsG0380013844.01.T01:intron 40.0%
TGGAAAATGGGAAAATGGGT+TGG + Chr3:46471653-46471672 None:intergenic 40.0%
TTCAACTAGGATCCGATCTT+GGG - Chr3:46474509-46474528 MsG0380013844.01.T01:intron 40.0%
TTTACACAACGATGTGGTCT+AGG - Chr3:46474992-46475011 MsG0380013844.01.T01:intron 40.0%
TTTCAACTAGGATCCGATCT+TGG - Chr3:46474508-46474527 MsG0380013844.01.T01:intron 40.0%
! ATGCTGTTGCAACTTTTGCT+TGG - Chr3:46476310-46476329 MsG0380013844.01.T01:intron 40.0%
! CATCACTGATGATGAAGCAT+TGG - Chr3:46474690-46474709 MsG0380013844.01.T01:intron 40.0%
! GAAGACAATAACCTGGCTTT+AGG - Chr3:46473531-46473550 MsG0380013844.01.T01:five_prime_UTR 40.0%
! GTTTTCAGAATGCGTCTTCT+TGG - Chr3:46473201-46473220 MsG0380013844.01.T01:intron 40.0%
! TGCTGTTGCAACTTTTGCTT+GGG - Chr3:46476311-46476330 MsG0380013844.01.T01:intron 40.0%
! TGGGATTCTAAGGACTATGT+TGG - Chr3:46472888-46472907 MsG0380013844.01.T01:intron 40.0%
! TTCTAAGGACTATGTTGGTC+GGG - Chr3:46472893-46472912 MsG0380013844.01.T01:intron 40.0%
!! AATCAAGGAGTACCCAAGAT+CGG + Chr3:46474524-46474543 None:intergenic 40.0%
!! ACTGATGATGAAGCATTGGA+AGG - Chr3:46474694-46474713 MsG0380013844.01.T01:intron 40.0%
!! ATGATGAAGCATTGGAAGGT+AGG - Chr3:46474698-46474717 MsG0380013844.01.T01:intron 40.0%
!! GCGCTTTTTGCCTAATTTCT+TGG + Chr3:46473063-46473082 None:intergenic 40.0%
!! TCGTTGATGACAGTGATGTT+AGG - Chr3:46474213-46474232 MsG0380013844.01.T01:intron 40.0%
!!! GGAGAGTCCTCTTTATTTTG+CGG - Chr3:46472914-46472933 MsG0380013844.01.T01:intron 40.0%
!!! GTCCTCTTTATTTTGCGGAA+AGG - Chr3:46472919-46472938 MsG0380013844.01.T01:intron 40.0%
!!! TACATTTTGGGATCTGTTGC+TGG - Chr3:46474038-46474057 MsG0380013844.01.T01:intron 40.0%
AAATTGCAGAAAGAGCTGGC+TGG - Chr3:46472868-46472887 MsG0380013844.01.T01:intron 45.0%
AACCTCCAATGGAAGAACAG+AGG + Chr3:46471751-46471770 None:intergenic 45.0%
AACGATGTGGTCTAGGTAGA+TGG - Chr3:46474999-46475018 MsG0380013844.01.T01:intron 45.0%
AATTGCAGAAAGAGCTGGCT+GGG - Chr3:46472869-46472888 MsG0380013844.01.T01:intron 45.0%
ACAGGCTGAAGACAATAACC+TGG - Chr3:46473524-46473543 MsG0380013844.01.T01:five_prime_UTR 45.0%
ACCGCATCCATATCCAATGA+TGG - Chr3:46474061-46474080 MsG0380013844.01.T01:intron 45.0%
ACTGATGTGGTCTAGGTAGA+TGG - Chr3:46475308-46475327 MsG0380013844.01.T01:intron 45.0%
AGCCAGGTAAAGTCGAATCA+AGG + Chr3:46474539-46474558 None:intergenic 45.0%
AGCCTCACTCTATTAGTGCA+GGG - Chr3:46474369-46474388 MsG0380013844.01.T01:intron 45.0%
AGGGAAGATCTTAACCACAC+CGG - Chr3:46472996-46473015 MsG0380013844.01.T01:intron 45.0%
AGTGCTATATGAGCCCATGA+TGG - Chr3:46476358-46476377 MsG0380013844.01.T01:five_prime_UTR 45.0%
ATGTTCTGACCGCAAAACAC+GGG - Chr3:46470730-46470749 MsG0380013844.01.T01:intron 45.0%
ATTCTGATTGCATGTGTCGG+TGG - Chr3:46474158-46474177 MsG0380013844.01.T01:intron 45.0%
ATTGGAGGTTGAAAATGGGC+CGG - Chr3:46471761-46471780 MsG0380013844.01.T01:intron 45.0%
ATTGGATCAACGGCAATTCG+TGG + Chr3:46470704-46470723 None:intergenic 45.0%
CACAACCTTGTCCATTAGGA+AGG + Chr3:46476034-46476053 None:intergenic 45.0%
CACTTCCTCTGTTCTTCCAT+TGG - Chr3:46471743-46471762 MsG0380013844.01.T01:intron 45.0%
CATCAGAGGCTATTAGAGAC+TGG - Chr3:46473991-46474010 MsG0380013844.01.T01:intron 45.0%
CATGTTCTGACCGCAAAACA+CGG - Chr3:46470729-46470748 MsG0380013844.01.T01:intron 45.0%
CCAAATCTCCCAAACGAATC+GGG + Chr3:46471801-46471820 None:intergenic 45.0%
CCCAAATCTCCCAAACGAAT+CGG + Chr3:46471802-46471821 None:intergenic 45.0%
CCCTTTCCCTTGAAAACAGA+GGG + Chr3:46474435-46474454 None:intergenic 45.0%
CTACTGCTACTGTATGTGCT+CGG - Chr3:46473118-46473137 MsG0380013844.01.T01:intron 45.0%
GGCCCTAGTAATATGGAGTT+TGG - Chr3:46474454-46474473 MsG0380013844.01.T01:intron 45.0%
GGGAGATTTGGGAAATTTGG+TGG - Chr3:46471810-46471829 MsG0380013844.01.T01:intron 45.0%
GGGCCAAACTCCATATTACT+AGG + Chr3:46474460-46474479 None:intergenic 45.0%
GTAATGTTAACCGGTGTTCC+CGG - Chr3:46470291-46470310 MsG0380013844.01.T01:three_prime_UTR 45.0%
GTTTCATGCTGTGATTGGCA+AGG - Chr3:46474091-46474110 MsG0380013844.01.T01:intron 45.0%
TAAGTGTAGCAGTTCCAGCA+TGG + Chr3:46473962-46473981 None:intergenic 45.0%
TAATATGGAGTTTGGCCCCA+AGG - Chr3:46474462-46474481 MsG0380013844.01.T01:intron 45.0%
TAATGTTAACCGGTGTTCCC+GGG - Chr3:46470292-46470311 MsG0380013844.01.T01:three_prime_UTR 45.0%
TACCCTGCACTAATAGAGTG+AGG + Chr3:46474374-46474393 None:intergenic 45.0%
TATCTGCTGCAGGATGATGA+TGG - Chr3:46474335-46474354 MsG0380013844.01.T01:intron 45.0%
TATTGCAGCACTGTACGTAG+CGG - Chr3:46475441-46475460 MsG0380013844.01.T01:intron 45.0%
TCTCTAGATACGCCAAGCAT+GGG + Chr3:46475998-46476017 None:intergenic 45.0%
TGCTGGAACTGCTACACTTA+AGG - Chr3:46473962-46473981 MsG0380013844.01.T01:intron 45.0%
TGGTTTAGCTGCTGAATGGT+TGG - Chr3:46476141-46476160 MsG0380013844.01.T01:five_prime_UTR 45.0%
TTATATGGGCGCACAGGATA+TGG - Chr3:46473161-46473180 MsG0380013844.01.T01:intron 45.0%
TTCCTCTGTTCTTCCATTGG+AGG - Chr3:46471746-46471765 MsG0380013844.01.T01:intron 45.0%
TTCTCTAGATACGCCAAGCA+TGG + Chr3:46475999-46476018 None:intergenic 45.0%
! ACTGGTCTCACCTATATCAC+AGG + Chr3:46473939-46473958 None:intergenic 45.0%
! CCGATTCGTTTGGGAGATTT+GGG - Chr3:46471799-46471818 MsG0380013844.01.T01:intron 45.0%
! CTCCTTGATTCGACTTTACC+TGG - Chr3:46474534-46474553 MsG0380013844.01.T01:intron 45.0%
! CTTCCTAATGGACAAGGTTG+TGG - Chr3:46476032-46476051 MsG0380013844.01.T01:intron 45.0%
! GCCCCAAGGTATTTAAAGTC+TGG - Chr3:46474476-46474495 MsG0380013844.01.T01:intron 45.0%
! TACACTGACTGATGTGGTCT+AGG - Chr3:46475301-46475320 MsG0380013844.01.T01:intron 45.0%
! TGAAGCATCATTCCAGCTCT+GGG - Chr3:46475968-46475987 MsG0380013844.01.T01:intron 45.0%
! TGTTTTCTTAACCAGTGCCC+CGG + Chr3:46470313-46470332 None:intergenic 45.0%
! TTCAACGACCCGATTCGTTT+GGG - Chr3:46471790-46471809 MsG0380013844.01.T01:intron 45.0%
! TTGAAGCATCATTCCAGCTC+TGG - Chr3:46475967-46475986 MsG0380013844.01.T01:intron 45.0%
! TTTTGTAGCTTGGACTACCC+TGG - Chr3:46474613-46474632 MsG0380013844.01.T01:intron 45.0%
!! ACCCTCTGTTTTCAAGGGAA+AGG - Chr3:46474431-46474450 MsG0380013844.01.T01:intron 45.0%
!! CAAGCTTTGGAAAAATGGGG+AGG - Chr3:46474125-46474144 MsG0380013844.01.T01:intron 45.0%
!! CCCTCTGTTTTCAAGGGAAA+GGG - Chr3:46474432-46474451 MsG0380013844.01.T01:intron 45.0%
!! CCTCTGTTTTCAAGGGAAAG+GGG - Chr3:46474433-46474452 MsG0380013844.01.T01:intron 45.0%
!! TGTATGTGCTCGGTTTGGTT+TGG - Chr3:46473128-46473147 MsG0380013844.01.T01:intron 45.0%
!!! GGAGAAGTTGGTGTTTTGCA+TGG - Chr3:46474302-46474321 MsG0380013844.01.T01:intron 45.0%
!! GAAATATATATATATATATA+AGG - Chr3:46475757-46475776 MsG0380013844.01.T01:intron 5.0%
!! TTTATAATACTTATAAAAAT+CGG + Chr3:46470588-46470607 None:intergenic 5.0%
AAGAGCTGGCTGGGATTCTA+AGG - Chr3:46472878-46472897 MsG0380013844.01.T01:intron 50.0%
AAGTTCCTTAACCAGTGCCC+CGG - Chr3:46470421-46470440 MsG0380013844.01.T01:three_prime_UTR 50.0%
AATGTTAACCGGTGTTCCCG+GGG - Chr3:46470293-46470312 MsG0380013844.01.T01:three_prime_UTR 50.0%
ACCGCAAAACACGGGATGAT+GGG - Chr3:46470738-46470757 MsG0380013844.01.T01:intron 50.0%
ACGTTGACGAAGGGAGAAGT+TGG - Chr3:46474290-46474309 MsG0380013844.01.T01:intron 50.0%
AGCCTGTGAAGTACAGACAC+TGG + Chr3:46473511-46473530 None:intergenic 50.0%
AGCTATGAGCTATCTGCTGC+AGG - Chr3:46474325-46474344 MsG0380013844.01.T01:intron 50.0%
CCCCTTTCCCTTGAAAACAG+AGG + Chr3:46474436-46474455 None:intergenic 50.0%
CCTTGTCCATTAGGAAGGGT+TGG + Chr3:46476029-46476048 None:intergenic 50.0%
CGCCAACATGTGTCATACAC+CGG + Chr3:46473398-46473417 None:intergenic 50.0%
CTAATTGGTGTGGAAGCTGC+TGG - Chr3:46474236-46474255 MsG0380013844.01.T01:intron 50.0%
CTGAAACTGGAGCTGGACAA+TGG - Chr3:46473090-46473109 MsG0380013844.01.T01:intron 50.0%
GAGCCTCACTCTATTAGTGC+AGG - Chr3:46474368-46474387 MsG0380013844.01.T01:intron 50.0%
GCTACTGTATGTGCTCGGTT+TGG - Chr3:46473123-46473142 MsG0380013844.01.T01:intron 50.0%
GGAAAGGGGCCCTAGTAATA+TGG - Chr3:46474447-46474466 MsG0380013844.01.T01:intron 50.0%
GGAAGATCTTAACCACACCG+GGG - Chr3:46472998-46473017 MsG0380013844.01.T01:intron 50.0%
GGGAAGATCTTAACCACACC+GGG - Chr3:46472997-46473016 MsG0380013844.01.T01:intron 50.0%
GGTGGAGGTTCAAATGCCAT+GGG - Chr3:46474176-46474195 MsG0380013844.01.T01:intron 50.0%
GTCCAGTGTCTGTACTTCAC+AGG - Chr3:46473506-46473525 MsG0380013844.01.T01:intron 50.0%
GTCCGGTGTATGACACATGT+TGG - Chr3:46473393-46473412 MsG0380013844.01.T01:intron 50.0%
TAATCTTATGAGCCCCGGTG+TGG + Chr3:46473013-46473032 None:intergenic 50.0%
TATGTTCAGGTCCGACACCA+GGG + Chr3:46474633-46474652 None:intergenic 50.0%
TCGGGTCGTTGAAGAACAAC+CGG + Chr3:46471783-46471802 None:intergenic 50.0%
TTCTCCCTTCGTCAACGTAG+CGG + Chr3:46474288-46474307 None:intergenic 50.0%
! ACCCATCATCCCGTGTTTTG+CGG + Chr3:46470742-46470761 None:intergenic 50.0%
! CCAACCCTTCCTAATGGACA+AGG - Chr3:46476026-46476045 MsG0380013844.01.T01:intron 50.0%
! CCCGATTCGTTTGGGAGATT+TGG - Chr3:46471798-46471817 MsG0380013844.01.T01:intron 50.0%
! CTTCAACGACCCGATTCGTT+TGG - Chr3:46471789-46471808 MsG0380013844.01.T01:intron 50.0%
! GGCCCATTTTCAACCTCCAA+TGG + Chr3:46471762-46471781 None:intergenic 50.0%
! GTTTTCTTAACCAGTGCCCC+GGG + Chr3:46470312-46470331 None:intergenic 50.0%
!! AATGCGTCTTCTTGGTGCTG+AGG - Chr3:46473209-46473228 MsG0380013844.01.T01:intron 50.0%
!! CACGGGATGATGGGTTGTAA+TGG - Chr3:46470747-46470766 MsG0380013844.01.T01:intron 50.0%
!! GGGATGATGGGTTGTAATGG+AGG - Chr3:46470750-46470769 MsG0380013844.01.T01:intron 50.0%
AGCTTGGACTACCCTGGTGT+CGG - Chr3:46474619-46474638 MsG0380013844.01.T01:intron 55.0%
AGTTCCTTAACCAGTGCCCC+GGG - Chr3:46470422-46470441 MsG0380013844.01.T01:three_prime_UTR 55.0%
CATGCCGCTACGTTGACGAA+GGG - Chr3:46474281-46474300 MsG0380013844.01.T01:intron 55.0%
CGCACAGGATATGGAAAGGC+AGG - Chr3:46473170-46473189 MsG0380013844.01.T01:intron 55.0%
CGGTGGAGGTTCAAATGCCA+TGG - Chr3:46474175-46474194 MsG0380013844.01.T01:intron 55.0%
CTATGTTCAGGTCCGACACC+AGG + Chr3:46474634-46474653 None:intergenic 55.0%
GACCGCAAAACACGGGATGA+TGG - Chr3:46470737-46470756 MsG0380013844.01.T01:intron 55.0%
GTAGCAGTTCCAGCATGGAC+TGG + Chr3:46473957-46473976 None:intergenic 55.0%
GTGGTTAACTTCAGTGGCCG+AGG - Chr3:46476051-46476070 MsG0380013844.01.T01:intron 55.0%
TAGGTGAGACCAGTCCATGC+TGG - Chr3:46473945-46473964 MsG0380013844.01.T01:intron 55.0%
TGGGCGCACAGGATATGGAA+AGG - Chr3:46473166-46473185 MsG0380013844.01.T01:intron 55.0%
! CTGATTGCATGTGTCGGTGG+AGG - Chr3:46474161-46474180 MsG0380013844.01.T01:intron 55.0%
AGCATGGGATGTCCCAGAGC+TGG + Chr3:46475983-46476002 None:intergenic 60.0%
GCATGCCGCTACGTTGACGA+AGG - Chr3:46474280-46474299 MsG0380013844.01.T01:intron 60.0%
GGTCATGTTAACCGGTGCCC+CGG + Chr3:46470443-46470462 None:intergenic 60.0%
GTCATGTTAACCGGTGCCCC+GGG + Chr3:46470442-46470461 None:intergenic 60.0%
GTTCCTTAACCAGTGCCCCG+GGG - Chr3:46470423-46470442 MsG0380013844.01.T01:three_prime_UTR 60.0%
TCATGTTAACCGGTGCCCCG+GGG + Chr3:46470441-46470460 None:intergenic 60.0%
!! GCTCTGGGACATCCCATGCT+TGG - Chr3:46475983-46476002 MsG0380013844.01.T01:intron 60.0%
!! GGTGTGGAAGCTGCTGGCTT+TGG - Chr3:46474242-46474261 MsG0380013844.01.T01:intron 60.0%
AACCAGTGCCCCGGGAACAC+CGG + Chr3:46470304-46470323 None:intergenic 65.0%
AACCGGTGTTCCCGGGGCAC+TGG - Chr3:46470299-46470318 MsG0380013844.01.T01:three_prime_UTR 70.0%
TAACCAGTGCCCCGGGGCAC+CGG - Chr3:46470429-46470448 MsG0380013844.01.T01:three_prime_UTR 70.0%
!! GTGCCCCGGGGCACTGGTTA+AGG + Chr3:46470429-46470448 None:intergenic 70.0%
TAACCGGTGCCCCGGGGCAC+TGG + Chr3:46470435-46470454 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 46470267 46476384 46470267 ID=MsG0380013844.01;Name=MsG0380013844.01
Chr3 mRNA 46470267 46476384 46470267 ID=MsG0380013844.01.T01;Parent=MsG0380013844.01;Name=MsG0380013844.01.T01;_AED=0.37;_eAED=0.37;_QI=417|0|0.33|0.66|1|0.83|6|326|293
Chr3 exon 46470267 46470705 46470267 ID=MsG0380013844.01.T01:exon:25794;Parent=MsG0380013844.01.T01
Chr3 exon 46471888 46472204 46471888 ID=MsG0380013844.01.T01:exon:25793;Parent=MsG0380013844.01.T01
Chr3 exon 46472261 46472703 46472261 ID=MsG0380013844.01.T01:exon:25792;Parent=MsG0380013844.01.T01
Chr3 exon 46473512 46473774 46473512 ID=MsG0380013844.01.T01:exon:25791;Parent=MsG0380013844.01.T01
Chr3 exon 46476125 46476215 46476125 ID=MsG0380013844.01.T01:exon:25790;Parent=MsG0380013844.01.T01
Chr3 exon 46476313 46476384 46476313 ID=MsG0380013844.01.T01:exon:25789;Parent=MsG0380013844.01.T01
Chr3 five_prime_UTR 46476313 46476384 46476313 ID=MsG0380013844.01.T01:five_prime_utr;Parent=MsG0380013844.01.T01
Chr3 five_prime_UTR 46476125 46476215 46476125 ID=MsG0380013844.01.T01:five_prime_utr;Parent=MsG0380013844.01.T01
Chr3 five_prime_UTR 46473521 46473774 46473521 ID=MsG0380013844.01.T01:five_prime_utr;Parent=MsG0380013844.01.T01
Chr3 CDS 46473512 46473520 46473512 ID=MsG0380013844.01.T01:cds;Parent=MsG0380013844.01.T01
Chr3 CDS 46472261 46472703 46472261 ID=MsG0380013844.01.T01:cds;Parent=MsG0380013844.01.T01
Chr3 CDS 46471888 46472204 46471888 ID=MsG0380013844.01.T01:cds;Parent=MsG0380013844.01.T01
Chr3 CDS 46470593 46470705 46470593 ID=MsG0380013844.01.T01:cds;Parent=MsG0380013844.01.T01
Chr3 three_prime_UTR 46470267 46470592 46470267 ID=MsG0380013844.01.T01:three_prime_utr;Parent=MsG0380013844.01.T01
Gene Sequence

>MsG0380013844.01.T01

ATGTGCTCGGTGAGACCAGTCCATGCTGGAACTGCTACACTTAAGGATGCTACATCAGAGGCTATTAGAGACTGGGTGACTAATGTTGAAACAACTCATTACATTTTGGGATCTGTTGCTGGACCGCATCCATATCCAATGATGGTAAGAGAGTTTCATGCTGTGATTGGCAAGGAAACAAGAAAGCAAGCTTTGGAAAAATGGGGAGGCAAACCAGATATTCTGATTGCATGTGTCGGTGGAGGTTCAAATGCCATGGGACTTTTCCATGAATTCGTTGATGACAGTGATGTTAGGCTAATTGGTGTGGAAGCTGCTGGCTTTGGCCTCAACAGTGGCAAGCATGCCGCTACGTTGACGAAGGGAGAAGTTGGTGTTTTGCATGGAGCTATGAGCTATCTGCTGCAGGATGATGATGGACAAATTGTTGAGCCTCACTCTATTAGTGCAGGGGAAAGGGGCCCTAGTAATATGGAGTTTGGCCCCAAGGTATTTAAAGTCTGGTCAACATTTTTTCAACTAGGATCCGATCTTGGGTACTCCTTGATTCGACTTTACCTGGCTGATGATTTAGATTTAGCTTGTTCTGATTGTGTTGTTATGCTTTCAAAAATATTGTTTTGTAGCTTGGACTACCCTGGTGTCGGACCTGAACATAGCTTTTTGAAAGACTTGGGGCGTGCTGAATATCATAGCATCACTGATGATGAAGCATTGGAAGGTAGGACTACTATGACTTGTTACTTATATTACATGATTGCAGATATAGCTTTTAAGAGAGTTTCGAGACTTGAAGCATCATTCCAGCTCTGGGACATCCCATGCTTGGCGTATCTAGAGAAAATATGTCCAACCCTTCCTAATGGACAAGGTTGTGGTTAA
Protein sequence

>MsG0380013844.01.T01

MCSVRPVHAGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDILIACVGGGSNAMGLFHEFVDDSDVRLIGVEAAGFGLNSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEPHSISAGERGPSNMEFGPKVFKVWSTFFQLGSDLGYSLIRLYLADDLDLACSDCVVMLSKILFCSLDYPGVGPEHSFLKDLGRAEYHSITDDEALEGRTTMTCYLYYMIADIAFKRVSRLEASFQLWDIPCLAYLEKICPTLPNGQGCG*