AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040569.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040569.01.T01 AT2G42210 66.142 127 34 1 6 132 37 154 7.05e-52 162
MsG0780040569.01.T01 AT2G42210 66.142 127 34 1 6 132 37 154 7.05e-52 162
MsG0780040569.01.T01 AT2G42210 66.142 127 34 1 6 132 37 154 7.05e-52 162
MsG0780040569.01.T01 AT2G42210 66.142 127 34 1 6 132 37 154 7.05e-52 162
MsG0780040569.01.T01 AT2G42210 66.142 127 34 1 6 132 51 168 8.56e-52 162

Find 40 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCTTCATCATGTTTAAA+AGG 0.206706 7:+79300260 None:intergenic
TGAGAGAAGTGTTGCTCTTC+CGG 0.269686 7:-79303106 MsG0780040569.01.T01:CDS
GAGAGAAGTGTTGCTCTTCC+GGG 0.309934 7:-79303105 MsG0780040569.01.T01:CDS
GTTGCTGGTGCAACTATTCT+TGG 0.345412 7:-79302943 MsG0780040569.01.T01:CDS
GCTGTTGGTGGATTTGTTGC+TGG 0.348409 7:-79302958 MsG0780040569.01.T01:CDS
CATTAGAACTTTGAAGATGA+TGG 0.404869 7:-79303079 MsG0780040569.01.T01:CDS
ATGAAGAGGGATCTTGTAAA+TGG 0.414469 7:-79302982 MsG0780040569.01.T01:CDS
AGTCTACATAGGGGTGGAAC+AGG 0.418652 7:-79303022 MsG0780040569.01.T01:CDS
TGTGAAAGCCAATGCTGATC+CGG 0.457987 7:+79300310 None:intergenic
CTTGTAAATGGTGCTGTTGG+TGG 0.465052 7:-79302970 MsG0780040569.01.T01:CDS
ATCTCAACTGCAATTTCTGC+CGG 0.488258 7:-79300329 MsG0780040569.01.T01:CDS
AATTTCTGCCGGATCAGCAT+TGG 0.497080 7:-79300318 MsG0780040569.01.T01:CDS
GACTCCTCCTATGGCGGCAA+AGG 0.503480 7:+79303041 None:intergenic
AACAGGTGGTGCAGAACTAC+AGG 0.509492 7:-79303005 MsG0780040569.01.T01:CDS
CATAATGTCGGTTATACTGT+AGG 0.510750 7:-79300359 MsG0780040569.01.T01:CDS
TTGAAGATGATGGGTGGCTA+TGG 0.511278 7:-79303069 MsG0780040569.01.T01:CDS
ATTAGAACTTTGAAGATGAT+GGG 0.515393 7:-79303078 MsG0780040569.01.T01:CDS
TTCATCATGTTTAAAAGGCG+TGG 0.528434 7:+79300265 None:intergenic
GGAGCGACCTTTGCCGCCAT+AGG 0.530743 7:-79303048 MsG0780040569.01.T01:CDS
GCGACCTTTGCCGCCATAGG+AGG 0.543885 7:-79303045 MsG0780040569.01.T01:CDS
TAACAAGCTTTGCATAATGT+CGG 0.545837 7:-79300371 MsG0780040569.01.T01:intron
CCATAGGAGGAGTCTACATA+GGG 0.550718 7:-79303032 MsG0780040569.01.T01:CDS
CCCTATGTAGACTCCTCCTA+TGG 0.554940 7:+79303032 None:intergenic
GGGGTACTGTAGTTGCCACC+TGG 0.555518 7:-79303146 MsG0780040569.01.T01:intron
GATCTTGTAAATGGTGCTGT+TGG 0.564385 7:-79302973 MsG0780040569.01.T01:CDS
AGAGAAGTGTTGCTCTTCCG+GGG 0.565741 7:-79303104 MsG0780040569.01.T01:CDS
TTCAAAGTTCTAATGAGCCC+CGG 0.577416 7:+79303087 None:intergenic
TGCAGAACTACAGGATGAAG+AGG 0.608336 7:-79302996 MsG0780040569.01.T01:CDS
CTACATAGGGGTGGAACAGG+TGG 0.622608 7:-79303019 MsG0780040569.01.T01:CDS
ATGTCGGTTATACTGTAGGA+AGG 0.622860 7:-79300355 MsG0780040569.01.T01:CDS
GCAACTATTCTTGGTTACAG+AGG 0.629555 7:-79302934 MsG0780040569.01.T01:intron
GCCATAGGAGGAGTCTACAT+AGG 0.633072 7:-79303033 MsG0780040569.01.T01:CDS
AGGAGGAGTCTACATAGGGG+TGG 0.649086 7:-79303028 MsG0780040569.01.T01:CDS
AACACGAGGAACATCATACC+AGG 0.650917 7:+79303128 None:intergenic
TATGTAGACTCCTCCTATGG+CGG 0.661958 7:+79303035 None:intergenic
GCAGAACTACAGGATGAAGA+GGG 0.663987 7:-79302995 MsG0780040569.01.T01:CDS
AGAACTTTGAAGATGATGGG+TGG 0.665092 7:-79303075 MsG0780040569.01.T01:CDS
GCAACACTTCTCTCAACACG+AGG 0.700649 7:+79303114 None:intergenic
ACGAGGAACATCATACCAGG+TGG 0.746444 7:+79303131 None:intergenic
CATAGGAGGAGTCTACATAG+GGG 0.784446 7:-79303031 MsG0780040569.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTATTTACCTTGT+CGG - Chr7:79301347-79301366 MsG0780040569.01.T01:intron 15.0%
!! AAACTTAGAACAAATAACTT+TGG - Chr7:79301500-79301519 MsG0780040569.01.T01:intron 20.0%
!! AATTCTCTGATAATTATATG+AGG + Chr7:79300554-79300573 None:intergenic 20.0%
!! AGTTAACTAGTTAGATAATT+AGG - Chr7:79300860-79300879 MsG0780040569.01.T01:intron 20.0%
!! ATTGTCAAAATAAAAAAGTC+AGG + Chr7:79302768-79302787 None:intergenic 20.0%
!! TAATTCCTAAGGTAAAAAAT+GGG - Chr7:79302049-79302068 MsG0780040569.01.T01:intron 20.0%
!! TTTCTTCAGTTATTTGTTTA+AGG - Chr7:79303010-79303029 MsG0780040569.01.T01:CDS 20.0%
!!! AACAAGTTGATAAATATTAG+AGG - Chr7:79301639-79301658 MsG0780040569.01.T01:intron 20.0%
!!! AATTGTCAAGATATTCATTT+TGG + Chr7:79301291-79301310 None:intergenic 20.0%
!!! TAATTTCATAGTATTTGCTA+CGG + Chr7:79300956-79300975 None:intergenic 20.0%
! AAGACTTCACAAAATGAATA+CGG + Chr7:79302687-79302706 None:intergenic 25.0%
! AATGAGTTAATCATGTCAAA+AGG + Chr7:79300755-79300774 None:intergenic 25.0%
! ACCACTTCTGAATTATATTA+TGG + Chr7:79300684-79300703 None:intergenic 25.0%
! AGTTCAGCTCATTTATTTAA+TGG - Chr7:79301748-79301767 MsG0780040569.01.T01:intron 25.0%
! CAATAAAGAGAAAGAAATGA+AGG + Chr7:79302521-79302540 None:intergenic 25.0%
! CTACTAAGGTAATTATAGAA+TGG + Chr7:79302580-79302599 None:intergenic 25.0%
! CTGATAATTATATGAGGAAA+GGG + Chr7:79300548-79300567 None:intergenic 25.0%
! GTAATTCCTAAGGTAAAAAA+TGG - Chr7:79302048-79302067 MsG0780040569.01.T01:intron 25.0%
! TAACACACAAGAAACATTTA+GGG + Chr7:79302953-79302972 None:intergenic 25.0%
! TAATTGAGTAATTGTGAGTT+GGG + Chr7:79301032-79301051 None:intergenic 25.0%
! TCAAAAGGAAGAAAAAACAA+TGG + Chr7:79300740-79300759 None:intergenic 25.0%
! TCCATAATATAATTCAGAAG+TGG - Chr7:79300680-79300699 MsG0780040569.01.T01:intron 25.0%
! TCTGATAATTATATGAGGAA+AGG + Chr7:79300549-79300568 None:intergenic 25.0%
! TTAAAGTAACACTTGTATGA+CGG - Chr7:79300808-79300827 MsG0780040569.01.T01:intron 25.0%
! TTAACACACAAGAAACATTT+AGG + Chr7:79302954-79302973 None:intergenic 25.0%
!! ACGAAAAGAAAAGTGTATAT+TGG + Chr7:79301568-79301587 None:intergenic 25.0%
!! ATCACTCACAAAACTTTTAA+GGG - Chr7:79300252-79300271 MsG0780040569.01.T01:CDS 25.0%
!! ATTAGAACTTTGAAGATGAT+GGG - Chr7:79300375-79300394 MsG0780040569.01.T01:intron 25.0%
!! ATTTATCAACTTGTTTGTAG+AGG + Chr7:79301634-79301653 None:intergenic 25.0%
!! TAGTTCTATTGATATATTCC+CGG - Chr7:79302550-79302569 MsG0780040569.01.T01:intron 25.0%
!! TGCTCTTTTATTATCAGTTA+AGG - Chr7:79302791-79302810 MsG0780040569.01.T01:intron 25.0%
!! TTAATAAACATTGATAGCAC+CGG + Chr7:79300792-79300811 None:intergenic 25.0%
!!! TAAAAAATGGGTTAAAAGAC+TGG - Chr7:79302061-79302080 MsG0780040569.01.T01:intron 25.0%
!!! TTTAACCCATTTTTTACCTT+AGG + Chr7:79302057-79302076 None:intergenic 25.0%
AAAATTGTCTGATCCTACAT+AGG - Chr7:79302138-79302157 MsG0780040569.01.T01:intron 30.0%
AACACACAAGAAACATTTAG+GGG + Chr7:79302952-79302971 None:intergenic 30.0%
AAGCATTATGGAAATAACTC+CGG + Chr7:79302415-79302434 None:intergenic 30.0%
ACAAAATACCTCCAAATACA+AGG + Chr7:79302819-79302838 None:intergenic 30.0%
ACTTGTGATTATGAAATGTC+AGG + Chr7:79301007-79301026 None:intergenic 30.0%
AGAATCTGTTAGAAGTTCAT+TGG + Chr7:79302487-79302506 None:intergenic 30.0%
AGTTCTATTGATATATTCCC+GGG - Chr7:79302551-79302570 MsG0780040569.01.T01:intron 30.0%
ATAAAATCTACAAGCCTTCT+AGG + Chr7:79302740-79302759 None:intergenic 30.0%
ATGAGAATGAGTAATTCCTA+AGG - Chr7:79302038-79302057 MsG0780040569.01.T01:intron 30.0%
CAGTAGTTATAAAAGAGAAG+TGG + Chr7:79301442-79301461 None:intergenic 30.0%
CGAACTCGAGTTAAAAAAAA+AGG + Chr7:79301178-79301197 None:intergenic 30.0%
CGCTGAAACATGATTATTAA+GGG - Chr7:79302218-79302237 MsG0780040569.01.T01:intron 30.0%
CTAATTGAGTAATTGTGAGT+TGG + Chr7:79301033-79301052 None:intergenic 30.0%
CTAGTTAACTACCTAATAAC+AGG + Chr7:79300850-79300869 None:intergenic 30.0%
GGAGTTTAACATTATTAGAG+AGG + Chr7:79301467-79301486 None:intergenic 30.0%
GTAATTATAGAATGGTTTCC+CGG + Chr7:79302572-79302591 None:intergenic 30.0%
GTAGTAGATAAGCATCATAT+GGG - Chr7:79300702-79300721 MsG0780040569.01.T01:intron 30.0%
TAACAAGCTTTGCATAATGT+CGG - Chr7:79303082-79303101 MsG0780040569.01.T01:CDS 30.0%
TAATTATAGAATGGTTTCCC+GGG + Chr7:79302571-79302590 None:intergenic 30.0%
TACTTTAGTCCATCTATTCA+AGG - Chr7:79302918-79302937 MsG0780040569.01.T01:intron 30.0%
TAGTAGATAAGCATCATATG+GGG - Chr7:79300703-79300722 MsG0780040569.01.T01:intron 30.0%
TATGAGTTATGTGATTTCAG+TGG - Chr7:79302853-79302872 MsG0780040569.01.T01:intron 30.0%
TTCCCTTCATCATGTTTAAA+AGG + Chr7:79303196-79303215 None:intergenic 30.0%
TTTAATGTTCACGAACAACT+CGG - Chr7:79301203-79301222 MsG0780040569.01.T01:intron 30.0%
TTTGTTTAAGGAGCTCTATA+TGG - Chr7:79303022-79303041 MsG0780040569.01.T01:CDS 30.0%
! CATCACTCACAAAACTTTTA+AGG - Chr7:79300251-79300270 MsG0780040569.01.T01:CDS 30.0%
! CATTAGAACTTTGAAGATGA+TGG - Chr7:79300374-79300393 MsG0780040569.01.T01:intron 30.0%
! TAGAAGGCTTGTAGATTTTA+TGG - Chr7:79302739-79302758 MsG0780040569.01.T01:intron 30.0%
! TGTCTGTGTTTCTATGTATT+GGG - Chr7:79302639-79302658 MsG0780040569.01.T01:intron 30.0%
! TTTTAAACATGATGAAGGGA+AGG - Chr7:79303195-79303214 MsG0780040569.01.T01:intron 30.0%
!! ATAGATGGACTAAAGTACAA+TGG + Chr7:79302915-79302934 None:intergenic 30.0%
AACACTGCAGCAATGAATAT+AGG + Chr7:79302372-79302391 None:intergenic 35.0%
AAGTAGGATCTTGACAACTT+TGG + Chr7:79300894-79300913 None:intergenic 35.0%
AAGTTGTCAAGATCCTACTT+AGG - Chr7:79300894-79300913 MsG0780040569.01.T01:intron 35.0%
ACAAGAAACATTTAGGGGTT+AGG + Chr7:79302947-79302966 None:intergenic 35.0%
AGACCACTAAGGAAAAATAG+TGG - Chr7:79301375-79301394 MsG0780040569.01.T01:intron 35.0%
AGCAAGAAATTATCACCTTG+TGG - Chr7:79302613-79302632 MsG0780040569.01.T01:intron 35.0%
ATGAAGAGGGATCTTGTAAA+TGG - Chr7:79300471-79300490 MsG0780040569.01.T01:intron 35.0%
ATTAAGGGTAGATGATGTGT+GGG - Chr7:79302233-79302252 MsG0780040569.01.T01:intron 35.0%
CACAATTACTCAATTAGCAC+TGG - Chr7:79301036-79301055 MsG0780040569.01.T01:intron 35.0%
CAGTTAAGGATCCTTGTATT+TGG - Chr7:79302805-79302824 MsG0780040569.01.T01:intron 35.0%
CATAATGCTTTGTGAAACAC+CGG - Chr7:79302425-79302444 MsG0780040569.01.T01:intron 35.0%
CTTCACAAAATGAATACGGA+TGG + Chr7:79302683-79302702 None:intergenic 35.0%
GACAATTAACTCGTTGAACT+TGG + Chr7:79301815-79301834 None:intergenic 35.0%
GCAGTGTATATGATAGAATC+CGG + Chr7:79302447-79302466 None:intergenic 35.0%
GCGCTGAAACATGATTATTA+AGG - Chr7:79302217-79302236 MsG0780040569.01.T01:intron 35.0%
GGTAGTAGATAAGCATCATA+TGG - Chr7:79300701-79300720 MsG0780040569.01.T01:intron 35.0%
GTATGGTTCAAAGCATAGTT+AGG - Chr7:79301538-79301557 MsG0780040569.01.T01:intron 35.0%
TATTAAGGGTAGATGATGTG+TGG - Chr7:79302232-79302251 MsG0780040569.01.T01:intron 35.0%
TCATTGTGCTAAATTGCTAC+CGG - Chr7:79300770-79300789 MsG0780040569.01.T01:intron 35.0%
TTAAGGATCCTTGTATTTGG+AGG - Chr7:79302808-79302827 MsG0780040569.01.T01:intron 35.0%
TTACCTTAGTAGTGCATCTT+TGG - Chr7:79302588-79302607 MsG0780040569.01.T01:intron 35.0%
TTCATCATGTTTAAAAGGCG+TGG + Chr7:79303191-79303210 None:intergenic 35.0%
TTCTAAGTTTAGTCCCACAT+CGG + Chr7:79301490-79301509 None:intergenic 35.0%
TTTATGATCTTACGACCACT+GGG + Chr7:79302121-79302140 None:intergenic 35.0%
TTTGTAGCAACTAGCAAGAA+AGG + Chr7:79302886-79302905 None:intergenic 35.0%
! ACGCCTTTTAAACATGATGA+AGG - Chr7:79303190-79303209 MsG0780040569.01.T01:intron 35.0%
! ATGCTTTGAACCATACTGTA+CGG + Chr7:79301534-79301553 None:intergenic 35.0%
! CATAATGTCGGTTATACTGT+AGG - Chr7:79303094-79303113 MsG0780040569.01.T01:CDS 35.0%
! CGCCTTTTAAACATGATGAA+GGG - Chr7:79303191-79303210 MsG0780040569.01.T01:intron 35.0%
! GTGAAGTCTTATGTCGTTTA+AGG - Chr7:79302697-79302716 MsG0780040569.01.T01:intron 35.0%
! GTGTCTGTGTTTCTATGTAT+TGG - Chr7:79302638-79302657 MsG0780040569.01.T01:intron 35.0%
! TAGTGGATAGTTGTGTTAGA+GGG - Chr7:79302169-79302188 MsG0780040569.01.T01:intron 35.0%
! TTAGTGGATAGTTGTGTTAG+AGG - Chr7:79302168-79302187 MsG0780040569.01.T01:intron 35.0%
! TTTTATGATCTTACGACCAC+TGG + Chr7:79302122-79302141 None:intergenic 35.0%
!! CTACCACTATTTTTCCTTAG+TGG + Chr7:79301381-79301400 None:intergenic 35.0%
!!! ATCTGCAGTCATTGATTTTG+CGG - Chr7:79303165-79303184 MsG0780040569.01.T01:intron 35.0%
AAGAGAAGTAATTGCTGAGG+GGG - Chr7:79301977-79301996 MsG0780040569.01.T01:intron 40.0%
AATGTTAAACTCCCCGATGT+GGG - Chr7:79301474-79301493 MsG0780040569.01.T01:intron 40.0%
AGATAAGCATCATATGGGGA+AGG - Chr7:79300707-79300726 MsG0780040569.01.T01:intron 40.0%
AGGAAGAGAAGTAATTGCTG+AGG - Chr7:79301974-79301993 MsG0780040569.01.T01:intron 40.0%
ATAACTCATAGCTTCTCCAC+TGG + Chr7:79302843-79302862 None:intergenic 40.0%
ATCTCAACTGCAATTTCTGC+CGG - Chr7:79303124-79303143 MsG0780040569.01.T01:CDS 40.0%
ATTCTCAAAGCTTCTGGTAG+CGG + Chr7:79301916-79301935 None:intergenic 40.0%
CACTAACTGAGTTCCTATGT+AGG + Chr7:79302154-79302173 None:intergenic 40.0%
CGACTCGACTCAATATGAAT+TGG - Chr7:79301118-79301137 MsG0780040569.01.T01:intron 40.0%
CTACATAGGAACTCAGTTAG+TGG - Chr7:79302152-79302171 MsG0780040569.01.T01:intron 40.0%
GAACCAACTCGACAATAGTT+CGG + Chr7:79301848-79301867 None:intergenic 40.0%
GAAGAGAAGTAATTGCTGAG+GGG - Chr7:79301976-79301995 MsG0780040569.01.T01:intron 40.0%
GAGTTGCATATAGTTCGACT+CGG + Chr7:79301727-79301746 None:intergenic 40.0%
GCAACTATTCTTGGTTACAG+AGG - Chr7:79300519-79300538 MsG0780040569.01.T01:intron 40.0%
GGAAGAGAAGTAATTGCTGA+GGG - Chr7:79301975-79301994 MsG0780040569.01.T01:intron 40.0%
GGAGTATGTCACCTGTTATT+AGG - Chr7:79300836-79300855 MsG0780040569.01.T01:intron 40.0%
GTTAGGCATCCTTGAATAGA+TGG + Chr7:79302930-79302949 None:intergenic 40.0%
TAACTCATAGCTTCTCCACT+GGG + Chr7:79302842-79302861 None:intergenic 40.0%
TAATGTTAAACTCCCCGATG+TGG - Chr7:79301473-79301492 MsG0780040569.01.T01:intron 40.0%
TAGCCAAAGATGCACTACTA+AGG + Chr7:79302594-79302613 None:intergenic 40.0%
TCATAGAACCTCAACCTAGA+AGG - Chr7:79302723-79302742 MsG0780040569.01.T01:intron 40.0%
TCTAAGTTTAGTCCCACATC+GGG + Chr7:79301489-79301508 None:intergenic 40.0%
TGCTGCAGTGTTCTGTAATT+GGG - Chr7:79302380-79302399 MsG0780040569.01.T01:intron 40.0%
TTAAGGGTAGATGATGTGTG+GGG - Chr7:79302234-79302253 MsG0780040569.01.T01:intron 40.0%
TTGAGAATGCACAAGTAGAG+AGG - Chr7:79301928-79301947 MsG0780040569.01.T01:intron 40.0%
TTGCTGCAGTGTTCTGTAAT+TGG - Chr7:79302379-79302398 MsG0780040569.01.T01:intron 40.0%
TTGTGCATTCTCAAAGCTTC+TGG + Chr7:79301922-79301941 None:intergenic 40.0%
TTTAGTTGCTGGCACTATCT+GGG - Chr7:79300287-79300306 MsG0780040569.01.T01:CDS 40.0%
! AATTGGTTCAGCTCGAAACT+CGG - Chr7:79301135-79301154 MsG0780040569.01.T01:intron 40.0%
! ATGTCGGTTATACTGTAGGA+AGG - Chr7:79303098-79303117 MsG0780040569.01.T01:CDS 40.0%
! CGGTGTTTCACAAAGCATTA+TGG + Chr7:79302427-79302446 None:intergenic 40.0%
! CTGTGTTTCTATGTATTGGG+AGG - Chr7:79302642-79302661 MsG0780040569.01.T01:intron 40.0%
! TGCTTTGAACCATACTGTAC+GGG + Chr7:79301533-79301552 None:intergenic 40.0%
! TGTAATTGGGAACTTGCTTC+CGG - Chr7:79302393-79302412 MsG0780040569.01.T01:intron 40.0%
! TGTTTCTATGTATTGGGAGG+AGG - Chr7:79302645-79302664 MsG0780040569.01.T01:intron 40.0%
! TTCAAAGTTCTAATGAGCCC+CGG + Chr7:79300369-79300388 None:intergenic 40.0%
!! ACTTTTAAGGGTGCAACAAC+TGG - Chr7:79300264-79300283 MsG0780040569.01.T01:CDS 40.0%
!! AGAACTTTGAAGATGATGGG+TGG - Chr7:79300378-79300397 MsG0780040569.01.T01:intron 40.0%
!! GAACTATTGTCGAGTTGGTT+CGG - Chr7:79301847-79301866 MsG0780040569.01.T01:intron 40.0%
!! GATCTTGTAAATGGTGCTGT+TGG - Chr7:79300480-79300499 MsG0780040569.01.T01:intron 40.0%
AACACGAGGAACATCATACC+AGG + Chr7:79300328-79300347 None:intergenic 45.0%
AACACTTGTATGACGGTTGC+TGG - Chr7:79300815-79300834 MsG0780040569.01.T01:intron 45.0%
AAGTAGAGAGGAACTTGGGA+GGG - Chr7:79301940-79301959 MsG0780040569.01.T01:intron 45.0%
AATTTCTGCCGGATCAGCAT+TGG - Chr7:79303135-79303154 MsG0780040569.01.T01:CDS 45.0%
AGGATCTTGACAACTTTGGC+TGG + Chr7:79300890-79300909 None:intergenic 45.0%
AGGGTTATTGATGCAGACTC+TGG - Chr7:79302188-79302207 MsG0780040569.01.T01:intron 45.0%
CAGCTCAAGTTCAGCTCATT+TGG - Chr7:79301781-79301800 MsG0780040569.01.T01:intron 45.0%
CATAGGAGGAGTCTACATAG+GGG - Chr7:79300422-79300441 MsG0780040569.01.T01:intron 45.0%
CCATAGGAGGAGTCTACATA+GGG - Chr7:79300421-79300440 MsG0780040569.01.T01:intron 45.0%
CTAAGTTTAGTCCCACATCG+GGG + Chr7:79301488-79301507 None:intergenic 45.0%
GAAACACAGACACAACCACA+AGG + Chr7:79302631-79302650 None:intergenic 45.0%
GCACAAGTAGAGAGGAACTT+GGG - Chr7:79301936-79301955 MsG0780040569.01.T01:intron 45.0%
GCAGAACTACAGGATGAAGA+GGG - Chr7:79300458-79300477 MsG0780040569.01.T01:intron 45.0%
GGATCTTGACAACTTTGGCT+GGG + Chr7:79300889-79300908 None:intergenic 45.0%
GGGTTATTGATGCAGACTCT+GGG - Chr7:79302189-79302208 MsG0780040569.01.T01:intron 45.0%
GTTCCGAACTATTGTCGAGT+TGG - Chr7:79301842-79301861 MsG0780040569.01.T01:intron 45.0%
GTTGCTGGTGCAACTATTCT+TGG - Chr7:79300510-79300529 MsG0780040569.01.T01:intron 45.0%
GTTTAGTTGCTGGCACTATC+TGG - Chr7:79300286-79300305 MsG0780040569.01.T01:CDS 45.0%
TATGTAGACTCCTCCTATGG+CGG + Chr7:79300421-79300440 None:intergenic 45.0%
TCTACAAGCCTTCTAGGTTG+AGG + Chr7:79302734-79302753 None:intergenic 45.0%
TGAAGAAACTCGCAGCATGA+GGG + Chr7:79302998-79303017 None:intergenic 45.0%
TGCACAAGTAGAGAGGAACT+TGG - Chr7:79301935-79301954 MsG0780040569.01.T01:intron 45.0%
TGCAGAACTACAGGATGAAG+AGG - Chr7:79300457-79300476 MsG0780040569.01.T01:intron 45.0%
TGTCGGTCTTAAGACCACTA+AGG - Chr7:79301364-79301383 MsG0780040569.01.T01:intron 45.0%
TGTGAAAGCCAATGCTGATC+CGG + Chr7:79303146-79303165 None:intergenic 45.0%
TGTTCACGAACAACTCGGTT+CGG - Chr7:79301208-79301227 MsG0780040569.01.T01:intron 45.0%
TTAGTTGCTGGCACTATCTG+GGG - Chr7:79300288-79300307 MsG0780040569.01.T01:CDS 45.0%
TTCTCAAAGCTTCTGGTAGC+GGG + Chr7:79301915-79301934 None:intergenic 45.0%
! GCAACAACTGGTTTAGTTGC+TGG - Chr7:79300276-79300295 MsG0780040569.01.T01:CDS 45.0%
! TAGTGGTCTTAAGACCGACA+AGG + Chr7:79301364-79301383 None:intergenic 45.0%
! TTGCGAGTTAGTTTACCCAG+TGG - Chr7:79302103-79302122 MsG0780040569.01.T01:intron 45.0%
!! CTTGTAAATGGTGCTGTTGG+TGG - Chr7:79300483-79300502 MsG0780040569.01.T01:intron 45.0%
!! TGAGAGAAGTGTTGCTCTTC+CGG - Chr7:79300347-79300366 MsG0780040569.01.T01:CDS 45.0%
!! TTGAAGATGATGGGTGGCTA+TGG - Chr7:79300384-79300403 MsG0780040569.01.T01:intron 45.0%
!!! TTGGAGGTATTTTGTCCCAG+TGG - Chr7:79302824-79302843 MsG0780040569.01.T01:intron 45.0%
AACAGGTGGTGCAGAACTAC+AGG - Chr7:79300448-79300467 MsG0780040569.01.T01:intron 50.0%
ACGAGGAACATCATACCAGG+TGG + Chr7:79300325-79300344 None:intergenic 50.0%
ACGTAGGTACTTCGAGGATG+AGG - Chr7:79300225-79300244 MsG0780040569.01.T01:CDS 50.0%
AGATCCTACTTAGGACCGTG+AGG - Chr7:79300903-79300922 MsG0780040569.01.T01:intron 50.0%
AGCAGAACGTAGGTACTTCG+AGG - Chr7:79300219-79300238 MsG0780040569.01.T01:CDS 50.0%
AGTCTACATAGGGGTGGAAC+AGG - Chr7:79300431-79300450 MsG0780040569.01.T01:intron 50.0%
CAAGTAGAGAGGAACTTGGG+AGG - Chr7:79301939-79301958 MsG0780040569.01.T01:intron 50.0%
CCCTATGTAGACTCCTCCTA+TGG + Chr7:79300424-79300443 None:intergenic 50.0%
CGATCATACTACCCTCCTCA+CGG + Chr7:79300921-79300940 None:intergenic 50.0%
CTCATTTCCAGCCCTAGTCA+CGG + Chr7:79301071-79301090 None:intergenic 50.0%
CTGAAGAAACTCGCAGCATG+AGG + Chr7:79302999-79303018 None:intergenic 50.0%
GCAACACTTCTCTCAACACG+AGG + Chr7:79300342-79300361 None:intergenic 50.0%
GCCATAGGAGGAGTCTACAT+AGG - Chr7:79300420-79300439 MsG0780040569.01.T01:intron 50.0%
GGTTCAAAGCCCGTACAGTA+TGG - Chr7:79301521-79301540 MsG0780040569.01.T01:intron 50.0%
TCATTTCCAGCCCTAGTCAC+GGG + Chr7:79301070-79301089 None:intergenic 50.0%
! TCTCAAAGCTTCTGGTAGCG+GGG + Chr7:79301914-79301933 None:intergenic 50.0%
!! AGAGAAGTGTTGCTCTTCCG+GGG - Chr7:79300349-79300368 MsG0780040569.01.T01:CDS 50.0%
!! GAGAGAAGTGTTGCTCTTCC+GGG - Chr7:79300348-79300367 MsG0780040569.01.T01:CDS 50.0%
!! GCTGTTGGTGGATTTGTTGC+TGG - Chr7:79300495-79300514 MsG0780040569.01.T01:intron 50.0%
!! GTGCTTGTGTAGTGGGTCAT+GGG + Chr7:79301889-79301908 None:intergenic 50.0%
!! TGTGCTTGTGTAGTGGGTCA+TGG + Chr7:79301890-79301909 None:intergenic 50.0%
!! TGTGTAGTGGGTCATGGGTA+GGG + Chr7:79301884-79301903 None:intergenic 50.0%
!! TTGTGTAGTGGGTCATGGGT+AGG + Chr7:79301885-79301904 None:intergenic 50.0%
AGAGGAACTTGGGAGGGATG+AGG - Chr7:79301946-79301965 MsG0780040569.01.T01:intron 55.0%
AGCCCTAGTCACGGGTGATA+GGG + Chr7:79301062-79301081 None:intergenic 55.0%
AGGAGGAGTCTACATAGGGG+TGG - Chr7:79300425-79300444 MsG0780040569.01.T01:intron 55.0%
CCTACTTAGGACCGTGAGGA+GGG - Chr7:79300907-79300926 MsG0780040569.01.T01:intron 55.0%
CTACATAGGGGTGGAACAGG+TGG - Chr7:79300434-79300453 MsG0780040569.01.T01:intron 55.0%
GAGTCGAGTCGAGCTCAGAT+CGG + Chr7:79301109-79301128 None:intergenic 55.0%
GCAAAGTCTCCTCCACCCAA+TGG + Chr7:79302284-79302303 None:intergenic 55.0%
TCCTACTTAGGACCGTGAGG+AGG - Chr7:79300906-79300925 MsG0780040569.01.T01:intron 55.0%
TTGGGAGGGATGAGGTTGAG+AGG - Chr7:79301954-79301973 MsG0780040569.01.T01:intron 55.0%
!! ACAACTCGGTTCGGCTCGTT+AGG - Chr7:79301217-79301236 MsG0780040569.01.T01:intron 55.0%
AGATGATGTGTGGGGAGCCG+CGG - Chr7:79302242-79302261 MsG0780040569.01.T01:intron 60.0%
CAGCCCTAGTCACGGGTGAT+AGG + Chr7:79301063-79301082 None:intergenic 60.0%
CCCTCCTCACGGTCCTAAGT+AGG + Chr7:79300910-79300929 None:intergenic 60.0%
CGGGGCTGTGCTTGTGTAGT+GGG + Chr7:79301896-79301915 None:intergenic 60.0%
CTATCACCCGTGACTAGGGC+TGG - Chr7:79301061-79301080 MsG0780040569.01.T01:intron 60.0%
GACTCCTCCTATGGCGGCAA+AGG + Chr7:79300415-79300434 None:intergenic 60.0%
GGCCCTATCACCCGTGACTA+GGG - Chr7:79301057-79301076 MsG0780040569.01.T01:intron 60.0%
TGGCCCTATCACCCGTGACT+AGG - Chr7:79301056-79301075 MsG0780040569.01.T01:intron 60.0%
! TAGTGGGTCATGGGTAGGGC+TGG + Chr7:79301880-79301899 None:intergenic 60.0%
!! GGGGTACTGTAGTTGCCACC+TGG - Chr7:79300307-79300326 MsG0780040569.01.T01:CDS 60.0%
ATGATGTGTGGGGAGCCGCG+GGG - Chr7:79302244-79302263 MsG0780040569.01.T01:intron 65.0%
GATGATGTGTGGGGAGCCGC+GGG - Chr7:79302243-79302262 MsG0780040569.01.T01:intron 65.0%
GCGACCTTTGCCGCCATAGG+AGG - Chr7:79300408-79300427 MsG0780040569.01.T01:intron 65.0%
GCGGGGCTGTGCTTGTGTAG+TGG + Chr7:79301897-79301916 None:intergenic 65.0%
GGAGCGACCTTTGCCGCCAT+AGG - Chr7:79300405-79300424 MsG0780040569.01.T01:intron 65.0%
TGATGTGTGGGGAGCCGCGG+GGG - Chr7:79302245-79302264 MsG0780040569.01.T01:intron 70.0%
!! GGGGGGTGTCCATTGGGTGG+AGG - Chr7:79302272-79302291 MsG0780040569.01.T01:intron 70.0%
ATGTGTGGGGAGCCGCGGGG+GGG - Chr7:79302247-79302266 MsG0780040569.01.T01:intron 75.0%
GATGTGTGGGGAGCCGCGGG+GGG - Chr7:79302246-79302265 MsG0780040569.01.T01:intron 75.0%
!! GGGGGGGGGGGGTGTCCATT+GGG - Chr7:79302266-79302285 MsG0780040569.01.T01:intron 75.0%
!! GGGGGGGGGTGTCCATTGGG+TGG - Chr7:79302269-79302288 MsG0780040569.01.T01:intron 75.0%
! TGTGTGGGGAGCCGCGGGGG+GGG - Chr7:79302248-79302267 MsG0780040569.01.T01:intron 80.0%
!!! GGGGGGGGGGGGGTGTCCAT+TGG - Chr7:79302265-79302284 MsG0780040569.01.T01:intron 80.0%
! GTGTGGGGAGCCGCGGGGGG+GGG - Chr7:79302249-79302268 MsG0780040569.01.T01:intron 85.0%
! TGTGGGGAGCCGCGGGGGGG+GGG - Chr7:79302250-79302269 MsG0780040569.01.T01:intron 85.0%
! GACACCCCCCCCCCCCCCCG+CGG + Chr7:79302262-79302281 None:intergenic 90.0%
! GTGGGGAGCCGCGGGGGGGG+GGG - Chr7:79302251-79302270 MsG0780040569.01.T01:intron 90.0%
! TGGGGAGCCGCGGGGGGGGG+GGG - Chr7:79302252-79302271 MsG0780040569.01.T01:intron 90.0%
! GGAGCCGCGGGGGGGGGGGG+GGG - Chr7:79302255-79302274 MsG0780040569.01.T01:intron 95.0%
! GGGAGCCGCGGGGGGGGGGG+GGG - Chr7:79302254-79302273 MsG0780040569.01.T01:intron 95.0%
! GGGGAGCCGCGGGGGGGGGG+GGG - Chr7:79302253-79302272 MsG0780040569.01.T01:intron 95.0%
Chromosome Type Strat End Strand Name
Chr7 gene 79300211 79303264 79300211 ID=MsG0780040569.01;Name=MsG0780040569.01
Chr7 mRNA 79300211 79303264 79300211 ID=MsG0780040569.01.T01;Parent=MsG0780040569.01;Name=MsG0780040569.01.T01;_AED=0.47;_eAED=0.49;_QI=0|0|0|1|0|0|3|0|137
Chr7 exon 79303249 79303264 79303249 ID=MsG0780040569.01.T01:exon:16538;Parent=MsG0780040569.01.T01
Chr7 exon 79302935 79303156 79302935 ID=MsG0780040569.01.T01:exon:16537;Parent=MsG0780040569.01.T01
Chr7 exon 79300211 79300386 79300211 ID=MsG0780040569.01.T01:exon:16536;Parent=MsG0780040569.01.T01
Chr7 CDS 79303249 79303264 79303249 ID=MsG0780040569.01.T01:cds;Parent=MsG0780040569.01.T01
Chr7 CDS 79302935 79303156 79302935 ID=MsG0780040569.01.T01:cds;Parent=MsG0780040569.01.T01
Chr7 CDS 79300211 79300386 79300211 ID=MsG0780040569.01.T01:cds;Parent=MsG0780040569.01.T01
Gene Sequence

>MsG0780040569.01.T01

ATGGACTCAGCAGAACTTGCCACCTGGTATGATGTTCCTCGTGTTGAGAGAAGTGTTGCTCTTCCGGGGCTCATTAGAACTTTGAAGATGATGGGTGGCTATGGAGCGACCTTTGCCGCCATAGGAGGAGTCTACATAGGGGTGGAACAGGTGGTGCAGAACTACAGGATGAAGAGGGATCTTGTAAATGGTGCTGTTGGTGGATTTGTTGCTGGTGCAACTATTCTTGGTTACAGAGCTTTGCATAATGTCGGTTATACTGTAGGAAGGAGCATCTCAACTGCAATTTCTGCCGGATCAGCATTGGCTTTCACATCTGCAGTCATTGATTTTGCGGCCACGCCTTTTAAACATGATGAAGGGAAGGAGTATGCTGCATTAACTACAAAGAAAAGACCCAGTAACAATGCATAA

Protein sequence

>MsG0780040569.01.T01

MDSAELATWYDVPRVERSVALPGLIRTLKMMGGYGATFAAIGGVYIGVEQVVQNYRMKRDLVNGAVGGFVAGATILGYRALHNVGYTVGRSISTAISAGSALAFTSAVIDFAATPFKHDEGKEYAALTTKKRPSNNA*