AlfalfaGEDB | MsG0380014293.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014293.01

KEGG: -
GO: GO:0006952 GO:0009607
PFAM: PF00407

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014293.01.T01	XP_003600177.1	91.667	156	2	1	1	145	1	156	8.80E-95	280

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014293.01.T01	G7J032	91.667	156	2	1	1	145	1	156	1.10E-97	280

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014293.01.T01	A0A396INQ3	91.667	156	2	1	1	145	1	156	4.21e-95	280

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001503.01	MsG0380014293.01	0.803810	2.918566e-49	1.480713e-46
MsG0380014293.01	MsG0380014646.01	-0.810774	9.753137e-51	5.932153e-48
MsG0380014293.01	MsG0480021133.01	0.816274	6.018716e-52	4.245825e-49
MsG0380014293.01	MsG0480022298.01	0.805903	1.066370e-49	5.709475e-47
MsG0380014293.01	MsG0680034974.01	0.841226	5.401923e-58	7.884357e-55
MsG0380014293.01	MsG0780036208.01	0.810050	1.397645e-50	8.339644e-48
MsG0380014293.01	MsG0780038519.01	0.809616	1.732478e-50	1.022121e-47
MsG0380014293.01	MsG0880045851.01	0.830910	2.249836e-55	2.403737e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014293.01.T01	MTR_3g055120	91.667	156	2	1	1	145	1	156	1.07e-98	280
MsG0380014293.01.T01	MTR_3g055120	92.208	154	3	2	1	145	1	154	1.29e-96	275
MsG0380014293.01.T01	MTR_3g055130	57.692	156	54	2	1	145	1	155	1.87e-54	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 48 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTGCAAGTAATTGA+AGG	0.557421	3:-52534692	MsG0380014293.01.T01:CDS
AACAACACTAAATGTAGGGT+TGG	0.556486	3:-52534783	MsG0380014293.01.T01:CDS
AACAACTAAGGTGATATCCT+TGG	0.527317	3:+52534739	None:intergenic
AACACTAAATGTAGGGTTGG+AGG	0.516628	3:-52534780	MsG0380014293.01.T01:CDS
AAGATGTGCAAGTAATTGAA+GGG	0.598044	3:-52534691	MsG0380014293.01.T01:CDS
AAGTAATTGAAGGGGATGGA+GGG	0.491464	3:-52534682	MsG0380014293.01.T01:CDS
AATATCAGAGAATAAAACTT+TGG	0.496609	3:-52534287	MsG0380014293.01.T01:CDS
AATTGATATGAGAATCCCTT+TGG	0.461217	3:-52534042	MsG0380014293.01.T01:three_prime_UTR
ACAATATTTGGTAGAACCTT+TGG	0.336066	3:+52534716	None:intergenic
ACATTGATGAGTCATGATAA+AGG	0.485079	3:-52534819	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGTGCAAGTAATTGA+AGG	-	Chr3:52534154-52534173	MsG0380014293.01.T01:exon	30.0%
AAGATGTGCAAGTAATTGAA+GGG	-	Chr3:52534155-52534174	MsG0380014293.01.T01:exon	30.0%
AATTGATATGAGAATCCCTT+TGG	-	Chr3:52534804-52534823	MsG0380014293.01.T01:CDS	30.0%
ACAATATTTGGTAGAACCTT+TGG	+	Chr3:52534133-52534152	None:intergenic	30.0%
ATGAGTTATCCCATACAATT+GGG	-	Chr3:52534465-52534484	MsG0380014293.01.T01:intron	30.0%
TGCACATCTTTCACAATATT+TGG	+	Chr3:52534145-52534164	None:intergenic	30.0%
TTGCCCAAGATAAAATAAAG+TGG	+	Chr3:52534660-52534679	None:intergenic	30.0%
AACAACACTAAATGTAGGGT+TGG	-	Chr3:52534063-52534082	MsG0380014293.01.T01:three_prime_UTR	35.0%
AACAACTAAGGTGATATCCT+TGG	+	Chr3:52534110-52534129	None:intergenic	35.0%
ACCCAAACAACACTAAATGT+AGG	-	Chr3:52534058-52534077	MsG0380014293.01.T01:three_prime_UTR	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	52534040	52534828	52534040	ID=MsG0380014293.01;Name=MsG0380014293.01
Chr3	mRNA	52534040	52534828	52534040	ID=MsG0380014293.01.T01;Parent=MsG0380014293.01;Name=MsG0380014293.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0\|0.5\|1\|1\|1\|2\|119\|145
Chr3	exon	52534040	52534448	52534040	ID=MsG0380014293.01.T01:exon:10342;Parent=MsG0380014293.01.T01
Chr3	exon	52534681	52534828	52534681	ID=MsG0380014293.01.T01:exon:10341;Parent=MsG0380014293.01.T01
Chr3	CDS	52534681	52534828	52534681	ID=MsG0380014293.01.T01:cds;Parent=MsG0380014293.01.T01
Chr3	CDS	52534159	52534448	52534159	ID=MsG0380014293.01.T01:cds;Parent=MsG0380014293.01.T01
Chr3	three_prime_UTR	52534040	52534158	52534040	ID=MsG0380014293.01.T01:three_prime_utr;Parent=MsG0380014293.01.T01

Gene Sequence

>MsG0380014293.01.T01

ATGATAAAGGAATTCAACACCCAAACAACACTAAATGTAGGGTTGGAGGCTCTCTGGGCTGCACAGTCCAAGGATATCACCTTAGTTGTTCCAAAGGTTCTACCAAATATTGTGAAAGATGTGCAAGTAATTGAAGGGGATGGAGGGGGTATATCTCCAGTAAATTATCAAAGGGAGGTGATCACTGAGTATGATGAGTTATCCCATACAATTGGGCTCCAAGTGGTTGAAGGAGGCTATCTCAATCAAGGCTTGTCATACTACAAGACAACTTTCCAATTCTCAGCAATATCAGAGAATAAAACTTTGGTGAATGTGAAGATCTCTTATGATCATGAATCTGACCTCATTGAAGAAAAAGTCAAACCTACGAAGACATCAGAGTCCACTTTATTTTATCTTGGGCAACTAGAAAAATTTCTGTTAAATGGTGCTTGA

Protein sequence

>MsG0380014293.01.T01

MIKEFNTQTTLNVGLEALWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGGISPVNYQREVITEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKTLVNVKISYDHESDLIEEKVKPTKTSESTLFYLGQLEKFLLNGA*