AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001503.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001503.01.T01 MTR_3g033860 79.457 258 53 0 1 258 958 1215 7.86e-128 392
MsG0180001503.01.T01 MTR_3g028040 78.682 258 55 0 1 258 958 1215 2.32e-124 382
MsG0180001503.01.T01 MTR_3g034380 77.132 258 59 0 1 258 957 1214 1.92e-119 369
MsG0180001503.01.T01 MTR_3g034430 83.398 259 42 1 1 258 958 1216 5.16e-115 358
MsG0180001503.01.T01 MTR_3g034460 82.379 227 40 0 1 227 941 1167 5.25e-110 343
MsG0180001503.01.T01 MTR_0002s0110 58.915 258 104 1 1 258 957 1212 8.08e-86 278
MsG0180001503.01.T01 MTR_3g035480 58.915 258 104 1 1 258 957 1212 1.61e-85 277
MsG0180001503.01.T01 MTR_3g035940 59.690 258 102 1 1 258 957 1212 4.88e-85 276
MsG0180001503.01.T01 MTR_3g035960 60.385 260 99 2 1 258 961 1218 1.04e-78 258
MsG0180001503.01.T01 MTR_3g032200 55.769 260 107 4 1 258 960 1213 4.30e-77 253
MsG0180001503.01.T01 MTR_0002s0090 59.690 258 102 1 1 258 956 1211 1.96e-76 251
MsG0180001503.01.T01 MTR_3g035500 59.690 258 102 1 1 258 956 1211 1.96e-76 251
MsG0180001503.01.T01 MTR_4g050410 55.769 260 109 3 1 258 955 1210 3.93e-75 248
MsG0180001503.01.T01 MTR_3g435720 56.923 260 105 3 1 258 957 1211 9.72e-75 247
MsG0180001503.01.T01 MTR_3g435740 56.154 260 107 3 1 258 1001 1255 5.29e-74 245
MsG0180001503.01.T01 MTR_3g033380 56.154 260 107 3 1 258 941 1195 9.39e-74 244
MsG0180001503.01.T01 MTR_3g031940 57.308 260 104 3 1 258 961 1215 7.71e-73 241
MsG0180001503.01.T01 MTR_3g032960 57.692 260 103 3 1 258 958 1212 1.39e-72 241
MsG0180001503.01.T01 MTR_1g008240 55.814 258 107 3 1 258 937 1187 3.12e-72 240
MsG0180001503.01.T01 MTR_3g030960 56.705 261 106 3 1 259 956 1211 5.94e-72 239
MsG0180001503.01.T01 MTR_3g032760 59.231 260 99 4 1 258 956 1210 1.42e-71 238
MsG0180001503.01.T01 MTR_0083s0120 56.538 260 106 4 1 258 457 711 1.28e-70 232
MsG0180001503.01.T01 MTR_3g032150 53.846 260 111 4 1 258 904 1156 1.33e-68 229
MsG0180001503.01.T01 MTR_3g032370 53.846 260 111 4 1 258 956 1208 2.33e-68 229
MsG0180001503.01.T01 MTR_3g032800 57.308 260 104 3 1 258 958 1212 2.72e-68 229
MsG0180001503.01.T01 MTR_3g032500 54.800 250 106 3 1 248 962 1206 3.21e-68 228
MsG0180001503.01.T01 MTR_3g033110 54.615 260 111 3 1 258 936 1190 6.10e-68 228
MsG0180001503.01.T01 MTR_2g063777 51.538 260 119 3 1 258 954 1208 1.97e-67 226
MsG0180001503.01.T01 MTR_3g030980 54.615 260 111 4 1 258 957 1211 1.61e-66 224
MsG0180001503.01.T01 MTR_8g030860 53.077 260 115 4 1 258 961 1215 2.77e-65 220
MsG0180001503.01.T01 MTR_3g033130 48.000 300 108 7 1 258 884 1177 5.60e-60 205
MsG0180001503.01.T01 MTR_3g034650 46.316 285 95 6 1 258 463 716 9.62e-59 199
MsG0180001503.01.T01 MTR_6g084540 45.736 258 77 2 1 258 1 195 5.75e-58 184
MsG0180001503.01.T01 MTR_3g036050 51.737 259 116 5 1 258 566 816 7.91e-58 198
MsG0180001503.01.T01 MTR_3g436140 55.376 186 74 3 1 185 1 178 1.73e-48 159
MsG0180001503.01.T01 MTR_3g033240 44.961 258 93 7 1 258 943 1151 5.81e-45 162
MsG0180001503.01.T01 MTR_3g014040 41.154 260 138 4 11 258 923 1179 7.67e-40 147
MsG0180001503.01.T01 MTR_0137s0070 37.895 285 147 5 1 258 347 628 1.18e-37 140
MsG0180001503.01.T01 MTR_3g014080 37.895 285 147 5 1 258 929 1210 3.29e-37 139
MsG0180001503.01.T01 MTR_0137s0010 40.400 250 122 5 11 258 477 701 1.68e-34 131
MsG0180001503.01.T01 MTR_8g106550 39.535 258 91 6 1 258 877 1069 2.06e-34 131
MsG0180001503.01.T01 MTR_3g014510 36.170 282 143 7 6 258 1009 1282 1.18e-33 129
MsG0180001503.01.T01 MTR_3g031860 54.815 135 56 3 124 258 1 130 7.57e-33 122
MsG0180001503.01.T01 MTR_3g014320 35.640 289 144 9 1 258 1028 1305 2.37e-32 125
MsG0180001503.01.T01 MTR_4g019360 35.563 284 149 8 1 258 837 1112 4.34e-32 124
MsG0180001503.01.T01 MTR_3g007190 33.922 283 133 7 1 258 779 1032 5.48e-32 124
MsG0180001503.01.T01 MTR_3g011620 34.783 276 149 6 8 258 926 1195 1.31e-31 123
MsG0180001503.01.T01 MTR_3g014460 37.063 286 135 10 7 258 136 410 8.73e-30 116
MsG0180001503.01.T01 MTR_3g435210 37.209 258 130 7 26 258 651 901 2.32e-28 114
MsG0180001503.01.T01 MTR_1g037610 35.294 289 145 9 1 258 1040 1317 1.18e-27 112
MsG0180001503.01.T01 MTR_5g037590 32.867 286 156 8 1 258 872 1149 2.32e-27 111
MsG0180001503.01.T01 MTR_3g435220 33.948 271 147 7 13 258 896 1159 2.92e-27 110
MsG0180001503.01.T01 MTR_0137s0070 36.538 260 150 7 1 258 347 593 4.00e-27 110
MsG0180001503.01.T01 MTR_3g034010 59.770 87 35 0 1 87 6 92 4.79e-27 100
MsG0180001503.01.T01 MTR_0603s0010 33.574 277 144 7 8 255 982 1247 4.95e-27 110
MsG0180001503.01.T01 MTR_3g014080 32.509 283 130 4 1 258 929 1175 6.05e-27 109
MsG0180001503.01.T01 MTR_3g014390 35.135 259 142 8 16 258 1036 1284 6.59e-27 109
MsG0180001503.01.T01 MTR_3g032110 33.333 276 152 7 8 258 985 1253 5.17e-26 107
MsG0180001503.01.T01 MTR_3g020890 33.333 282 148 7 6 259 943 1212 5.93e-26 107
MsG0180001503.01.T01 MTR_8g446950 35.424 271 142 9 13 258 962 1224 3.18e-25 104
MsG0180001503.01.T01 MTR_0002s0120 64.634 82 29 0 1 82 740 821 4.03e-25 104
MsG0180001503.01.T01 MTR_3g032340 33.094 278 150 8 8 258 988 1256 5.65e-25 104
MsG0180001503.01.T01 MTR_1g045960 33.942 274 137 9 11 255 904 1162 4.23e-24 101
MsG0180001503.01.T01 MTR_3g022730 32.061 262 158 10 8 259 149 400 5.01e-22 94.7
MsG0180001503.01.T01 MTR_3g022730 33.333 234 114 6 24 251 70 267 1.18e-14 73.6
MsG0180001503.01.T01 MTR_3g071080 31.183 279 161 5 4 258 110 381 5.53e-22 94.4
MsG0180001503.01.T01 MTR_3g071040 31.183 279 161 5 4 258 110 381 5.53e-22 94.4
MsG0180001503.01.T01 MTR_3g071010 31.183 279 161 5 4 258 119 390 8.10e-22 94.0
MsG0180001503.01.T01 MTR_3g070650 31.183 279 161 6 4 258 191 462 3.67e-21 92.4
MsG0180001503.01.T01 MTR_3g014360 31.673 281 135 8 8 258 1000 1253 4.40e-20 89.7
MsG0180001503.01.T01 MTR_0005s0210 30.901 233 129 5 18 225 202 427 2.79e-18 84.0
MsG0180001503.01.T01 MTR_2g039090 29.762 252 146 7 29 258 946 1188 1.90e-17 82.0
MsG0180001503.01.T01 MTR_3g020620 45.000 100 55 0 1 100 1064 1163 1.74e-16 79.3
MsG0180001503.01.T01 MTR_3g032360 36.628 172 63 2 79 249 39 165 1.94e-16 75.1
MsG0180001503.01.T01 MTR_2g038760 30.159 252 145 8 29 258 972 1214 2.20e-16 79.0
MsG0180001503.01.T01 MTR_3g018930 32.819 259 140 10 25 258 873 1122 2.36e-16 79.0
MsG0180001503.01.T01 MTR_3g033980 39.521 167 50 5 122 258 25 170 6.73e-16 74.3
MsG0180001503.01.T01 MTR_8g038590 32.143 252 141 7 29 258 964 1207 2.31e-15 75.9
MsG0180001503.01.T01 MTR_3g032140 34.783 184 74 2 67 249 27 165 4.74e-15 71.2
MsG0180001503.01.T01 MTR_2g014730 32.099 243 143 8 21 254 856 1085 1.58e-14 73.6
MsG0180001503.01.T01 MTR_2g038930 28.968 252 148 8 29 258 798 1040 3.24e-14 72.4
MsG0180001503.01.T01 MTR_3g022590 32.510 243 120 8 24 259 216 421 4.48e-14 71.6
MsG0180001503.01.T01 MTR_2g038900 28.968 252 148 8 29 258 961 1203 4.56e-14 72.0
MsG0180001503.01.T01 MTR_3g021170 38.889 144 77 3 119 258 975 1111 1.03e-13 71.2
MsG0180001503.01.T01 MTR_3g022570 31.955 266 145 10 17 258 895 1148 2.17e-13 70.1
MsG0180001503.01.T01 MTR_3g022940 38.889 144 77 3 119 258 974 1110 2.41e-13 70.1
MsG0180001503.01.T01 MTR_3g021330 31.336 217 103 6 72 258 364 564 4.72e-13 68.9
MsG0180001503.01.T01 MTR_3g022870 31.955 266 145 11 17 258 857 1110 6.23e-13 68.9
MsG0180001503.01.T01 MTR_3g022790 29.455 275 147 12 13 259 1083 1338 6.77e-13 68.6
MsG0180001503.01.T01 MTR_3g022870 31.955 266 145 11 17 258 821 1074 8.04e-13 68.6
MsG0180001503.01.T01 MTR_2g014840 31.298 262 147 8 18 255 959 1211 9.44e-13 68.2
MsG0180001503.01.T01 MTR_3g019000 29.545 264 152 10 7 259 880 1120 1.05e-12 68.2
MsG0180001503.01.T01 MTR_3g021380 31.727 249 141 9 31 258 860 1100 1.07e-12 68.2
MsG0180001503.01.T01 MTR_3g022920 37.500 144 79 4 119 258 967 1103 1.22e-12 67.8
MsG0180001503.01.T01 MTR_0005s0200 31.138 167 109 3 1 162 938 1103 1.46e-12 67.8
MsG0180001503.01.T01 MTR_3g021100 38.889 144 77 3 119 258 982 1118 1.47e-12 67.8
MsG0180001503.01.T01 MTR_3g022400 36.806 144 80 3 119 258 971 1107 1.73e-12 67.4
MsG0180001503.01.T01 MTR_3g022230 30.579 242 127 7 24 259 1359 1565 3.09e-12 66.6
MsG0180001503.01.T01 MTR_3g071130 36.620 142 82 4 1 141 906 1040 4.32e-12 66.2
MsG0180001503.01.T01 MTR_3g070590 36.620 142 82 4 1 141 864 998 4.37e-12 66.2
MsG0180001503.01.T01 MTR_3g021340 38.889 144 77 3 119 258 968 1104 4.76e-12 66.2
MsG0180001503.01.T01 MTR_3g022600 33.469 245 116 8 24 259 1023 1229 4.89e-12 66.2
MsG0180001503.01.T01 MTR_3g022400 27.508 309 147 9 16 258 782 1079 1.50e-11 64.7
MsG0180001503.01.T01 MTR_3g027250 30.864 243 125 8 24 259 903 1109 1.52e-11 64.7
MsG0180001503.01.T01 MTR_3g021400 35.000 140 88 2 119 258 967 1103 1.88e-11 64.3
MsG0180001503.01.T01 MTR_3g022060 31.395 258 132 9 9 259 792 1011 2.37e-11 63.9
MsG0180001503.01.T01 MTR_3g024460 30.041 243 127 8 24 259 520 726 2.96e-11 63.5
MsG0180001503.01.T01 MTR_3g019040 26.923 286 160 10 9 258 846 1118 8.41e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001503.01.T01 AT3G14460 31.538 260 149 6 18 252 1128 1383 2.54e-26 108

Find 66 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCAAGATCTTGTCATTAA+TGG 0.162653 1:-22364678 MsG0180001503.01.T01:CDS
AATAGAAATTGTTTGTAATT+TGG 0.164620 1:+22364455 None:intergenic
GTGTAATTGCTCCACGTTTC+AGG 0.168449 1:+22364774 None:intergenic
TGGAAACCCCATTCAATTAA+TGG 0.204315 1:+22364405 None:intergenic
ATAGAAATTGTTTGTAATTT+GGG 0.219954 1:+22364456 None:intergenic
GAGCAATTACACGTCGCTTT+TGG 0.241170 1:-22364763 MsG0180001503.01.T01:CDS
TTGGAGGGTTGAGGGGTTAT+AGG 0.264866 1:+22364614 None:intergenic
TCCGCTGAGGTAGTGATATA+AGG 0.286733 1:+22364565 None:intergenic
CTTGTCATTAATGGTTGTAT+TGG 0.330553 1:-22364669 MsG0180001503.01.T01:CDS
CATAGTGCAAACTCTAGTTT+TGG 0.344822 1:+22364498 None:intergenic
TCATACCGTTCTTCTAAAAC+AGG 0.349718 1:+22364142 None:intergenic
TGACAGAAACACCAAGGAAA+TGG 0.367592 1:+22364302 None:intergenic
CATTAATGGTTGTATTGGTC+TGG 0.378913 1:-22364664 MsG0180001503.01.T01:CDS
CTTTCCTCCTTCCCATTGGA+TGG 0.383270 1:-22364711 MsG0180001503.01.T01:CDS
TTCACTTTCCTCCTTCCCAT+TGG 0.397930 1:-22364715 MsG0180001503.01.T01:CDS
GCAATTGCTGCCCATTTCCT+TGG 0.403461 1:-22364313 MsG0180001503.01.T01:CDS
ATGACAAGATCTTGGAGCTT+AGG 0.404049 1:+22364684 None:intergenic
TTGTAAGAGAAGTAAGGCTT+TGG 0.411824 1:+22364385 None:intergenic
ATGAAATGGTTAGGTGGAAA+TGG 0.414180 1:-22364261 MsG0180001503.01.T01:CDS
GAGATACAAACTTTCAAGAT+TGG 0.418028 1:+22364530 None:intergenic
GTAATCTCTCTGAAATGAAA+TGG 0.426794 1:-22364275 MsG0180001503.01.T01:CDS
ACAAATTTGTAAGAGAAGTA+AGG 0.431713 1:+22364379 None:intergenic
GATGCCGCCATTAATTGAAT+GGG 0.433794 1:-22364412 MsG0180001503.01.T01:CDS
AACCATTAATGACAAGATCT+TGG 0.435188 1:+22364676 None:intergenic
AAAATTAAGTGTTTCAAGAG+AGG 0.451984 1:+22364224 None:intergenic
TGAAATGGTTAGGTGGAAAT+GGG 0.455937 1:-22364260 MsG0180001503.01.T01:CDS
TATTGTTCACACCTTGTTGA+AGG 0.457875 1:-22364337 MsG0180001503.01.T01:CDS
AGATGCCGCCATTAATTGAA+TGG 0.458622 1:-22364413 MsG0180001503.01.T01:CDS
ATGAAGTGACTTCAAAGAAG+TGG 0.459592 1:+22364830 None:intergenic
CTCTCTGAAATGAAATGGTT+AGG 0.467594 1:-22364270 MsG0180001503.01.T01:CDS
GACAGAAACACCAAGGAAAT+GGG 0.471201 1:+22364303 None:intergenic
CCGCTGAGGTAGTGATATAA+GGG 0.477627 1:+22364566 None:intergenic
TTGTCAACAACTTGAGTCCT+TGG 0.483632 1:-22364196 MsG0180001503.01.T01:CDS
GAAGACCGTGGAGTCTCAAA+AGG 0.531256 1:+22364886 None:intergenic
ACTTCATATTTATGATTGCA+AGG 0.543630 1:-22364814 MsG0180001503.01.T01:CDS
ATCTCTCACTGCATTTCCAG+TGG 0.545047 1:-22364862 MsG0180001503.01.T01:CDS
ACTGGAAATGCAGTGAGAGA+TGG 0.546982 1:+22364864 None:intergenic
GCTTAGGAAAACCATCCAAT+GGG 0.547250 1:+22364700 None:intergenic
CTCACTGCATTTCCAGTGGA+AGG 0.555451 1:-22364858 MsG0180001503.01.T01:CDS
AACAGGGCATTGAGAGAGGA+AGG 0.559445 1:+22364159 None:intergenic
GAAATTGTTTGTAATTTGGG+AGG 0.560791 1:+22364459 None:intergenic
TGAAGTGACTTCAAAGAAGT+GGG 0.567464 1:+22364831 None:intergenic
CATACCGTTCTTCTAAAACA+GGG 0.576825 1:+22364143 None:intergenic
CATTCTTGCCTCCTGAAACG+TGG 0.580845 1:-22364785 MsG0180001503.01.T01:CDS
AGCTTAGGAAAACCATCCAA+TGG 0.585148 1:+22364699 None:intergenic
ACAACTTGAGTCCTTGGCAG+AGG 0.587967 1:-22364190 MsG0180001503.01.T01:CDS
CTAAAACAGGGCATTGAGAG+AGG 0.593848 1:+22364155 None:intergenic
TTGAATTTAGACGGTAGCTG+TGG 0.596623 1:-22364738 MsG0180001503.01.T01:CDS
CTAGAGTTTGCACTATGTGA+AGG 0.603569 1:-22364492 MsG0180001503.01.T01:CDS
CAAACTTTCAAGATTGGTGA+GGG 0.605411 1:+22364536 None:intergenic
TCTGAAATGAAATGGTTAGG+TGG 0.607563 1:-22364267 MsG0180001503.01.T01:CDS
CAGCAATTGCTCCTTCAACA+AGG 0.608883 1:+22364326 None:intergenic
GAAGTGGGTAGACCTTCCAC+TGG 0.612646 1:+22364846 None:intergenic
AAAACCATCCAATGGGAAGG+AGG 0.614788 1:+22364707 None:intergenic
ACAAACTTTCAAGATTGGTG+AGG 0.617188 1:+22364535 None:intergenic
AGGAAAACCATCCAATGGGA+AGG 0.619391 1:+22364704 None:intergenic
ATGCCGCCATTAATTGAATG+GGG 0.619843 1:-22364411 MsG0180001503.01.T01:CDS
TATATCACTACCTCAGCGGA+TGG 0.621670 1:-22364562 MsG0180001503.01.T01:CDS
TAAGTGTTTCAAGAGAGGAG+AGG 0.635232 1:+22364229 None:intergenic
TAATTGCTCCACGTTTCAGG+AGG 0.637978 1:+22364777 None:intergenic
AGGTAACATGACCTCTGCCA+AGG 0.653552 1:+22364179 None:intergenic
GTGAGGGTGTCCATCCGCTG+AGG 0.665557 1:+22364552 None:intergenic
CCCTTATATCACTACCTCAG+CGG 0.676898 1:-22364566 MsG0180001503.01.T01:CDS
AAACCCCATTCAATTAATGG+CGG 0.677087 1:+22364408 None:intergenic
ACTTATTGACAGAAACACCA+AGG 0.681052 1:+22364296 None:intergenic
CAGTGAGAGATGGAAGACCG+TGG 0.692644 1:+22364874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGAAATTGTTTGTAATT+TGG + Chr1:22364615-22364634 None:intergenic 15.0%
!! ATAGAAATTGTTTGTAATTT+GGG + Chr1:22364614-22364633 None:intergenic 15.0%
!!! ATGAAAATACACAAAGTTTT+TGG + Chr1:22364475-22364494 None:intergenic 20.0%
! AAAATTAAGTGTTTCAAGAG+AGG + Chr1:22364846-22364865 None:intergenic 25.0%
! ACAAATTTGTAAGAGAAGTA+AGG + Chr1:22364691-22364710 None:intergenic 25.0%
! ACTTCATATTTATGATTGCA+AGG - Chr1:22364253-22364272 MsG0180001503.01.T01:CDS 25.0%
!!! AAAATACACAAAGTTTTTGG+AGG + Chr1:22364472-22364491 None:intergenic 25.0%
!!! AAATACACAAAGTTTTTGGA+GGG + Chr1:22364471-22364490 None:intergenic 25.0%
!!! AGAACTTTCTGAAACAAAAA+TGG + Chr1:22364432-22364451 None:intergenic 25.0%
AACCATTAATGACAAGATCT+TGG + Chr1:22364394-22364413 None:intergenic 30.0%
CTTGTCATTAATGGTTGTAT+TGG - Chr1:22364398-22364417 MsG0180001503.01.T01:CDS 30.0%
GAAATTGTTTGTAATTTGGG+AGG + Chr1:22364611-22364630 None:intergenic 30.0%
GAGATACAAACTTTCAAGAT+TGG + Chr1:22364540-22364559 None:intergenic 30.0%
!! GTAATCTCTCTGAAATGAAA+TGG - Chr1:22364792-22364811 MsG0180001503.01.T01:CDS 30.0%
!!! CTTTTGGAGTTGAATTTAGA+CGG - Chr1:22364320-22364339 MsG0180001503.01.T01:CDS 30.0%
AAACCCCATTCAATTAATGG+CGG + Chr1:22364662-22364681 None:intergenic 35.0%
ACAAACTTTCAAGATTGGTG+AGG + Chr1:22364535-22364554 None:intergenic 35.0%
ACTTATTGACAGAAACACCA+AGG + Chr1:22364774-22364793 None:intergenic 35.0%
ATGAAATGGTTAGGTGGAAA+TGG - Chr1:22364806-22364825 MsG0180001503.01.T01:CDS 35.0%
ATGAAGTGACTTCAAAGAAG+TGG + Chr1:22364240-22364259 None:intergenic 35.0%
CAAACTTTCAAGATTGGTGA+GGG + Chr1:22364534-22364553 None:intergenic 35.0%
CTCCAAGATCTTGTCATTAA+TGG - Chr1:22364389-22364408 MsG0180001503.01.T01:CDS 35.0%
TATTGTTCACACCTTGTTGA+AGG - Chr1:22364730-22364749 MsG0180001503.01.T01:CDS 35.0%
TGAAATGGTTAGGTGGAAAT+GGG - Chr1:22364807-22364826 MsG0180001503.01.T01:CDS 35.0%
TGAAGTGACTTCAAAGAAGT+GGG + Chr1:22364239-22364258 None:intergenic 35.0%
TGGAAACCCCATTCAATTAA+TGG + Chr1:22364665-22364684 None:intergenic 35.0%
TTGTAAGAGAAGTAAGGCTT+TGG + Chr1:22364685-22364704 None:intergenic 35.0%
! CATTAATGGTTGTATTGGTC+TGG - Chr1:22364403-22364422 MsG0180001503.01.T01:CDS 35.0%
! TCTGAAATGAAATGGTTAGG+TGG - Chr1:22364800-22364819 MsG0180001503.01.T01:CDS 35.0%
!! CATAGTGCAAACTCTAGTTT+TGG + Chr1:22364572-22364591 None:intergenic 35.0%
!! CTCTCTGAAATGAAATGGTT+AGG - Chr1:22364797-22364816 MsG0180001503.01.T01:CDS 35.0%
!!! CAAACTCTAGTTTTGGAAGA+TGG + Chr1:22364565-22364584 None:intergenic 35.0%
AGATGCCGCCATTAATTGAA+TGG - Chr1:22364654-22364673 MsG0180001503.01.T01:CDS 40.0%
AGCTTAGGAAAACCATCCAA+TGG + Chr1:22364371-22364390 None:intergenic 40.0%
ATGACAAGATCTTGGAGCTT+AGG + Chr1:22364386-22364405 None:intergenic 40.0%
ATGCCGCCATTAATTGAATG+GGG - Chr1:22364656-22364675 MsG0180001503.01.T01:CDS 40.0%
CTAGAGTTTGCACTATGTGA+AGG - Chr1:22364575-22364594 MsG0180001503.01.T01:CDS 40.0%
GACAGAAACACCAAGGAAAT+GGG + Chr1:22364767-22364786 None:intergenic 40.0%
GATGCCGCCATTAATTGAAT+GGG - Chr1:22364655-22364674 MsG0180001503.01.T01:CDS 40.0%
GCTTAGGAAAACCATCCAAT+GGG + Chr1:22364370-22364389 None:intergenic 40.0%
TAAGTGTTTCAAGAGAGGAG+AGG + Chr1:22364841-22364860 None:intergenic 40.0%
TGACAGAAACACCAAGGAAA+TGG + Chr1:22364768-22364787 None:intergenic 40.0%
TTGAATTTAGACGGTAGCTG+TGG - Chr1:22364329-22364348 MsG0180001503.01.T01:CDS 40.0%
TTGTCAACAACTTGAGTCCT+TGG - Chr1:22364871-22364890 MsG0180001503.01.T01:CDS 40.0%
!! AAAGTTTTTGGAGGGTTGAG+GGG + Chr1:22364463-22364482 None:intergenic 40.0%
!! ACAAAGTTTTTGGAGGGTTG+AGG + Chr1:22364465-22364484 None:intergenic 40.0%
!! CAAAGTTTTTGGAGGGTTGA+GGG + Chr1:22364464-22364483 None:intergenic 40.0%
!!! ACTCTAGTTTTGGAAGATGG+TGG + Chr1:22364562-22364581 None:intergenic 40.0%
AAAACCATCCAATGGGAAGG+AGG + Chr1:22364363-22364382 None:intergenic 45.0%
ACTGGAAATGCAGTGAGAGA+TGG + Chr1:22364206-22364225 None:intergenic 45.0%
AGGAAAACCATCCAATGGGA+AGG + Chr1:22364366-22364385 None:intergenic 45.0%
ATCTCTCACTGCATTTCCAG+TGG - Chr1:22364205-22364224 MsG0180001503.01.T01:CDS 45.0%
CAGCAATTGCTCCTTCAACA+AGG + Chr1:22364744-22364763 None:intergenic 45.0%
CCCTTATATCACTACCTCAG+CGG - Chr1:22364501-22364520 MsG0180001503.01.T01:CDS 45.0%
CCGCTGAGGTAGTGATATAA+GGG + Chr1:22364504-22364523 None:intergenic 45.0%
GTGTAATTGCTCCACGTTTC+AGG + Chr1:22364296-22364315 None:intergenic 45.0%
TAATTGCTCCACGTTTCAGG+AGG + Chr1:22364293-22364312 None:intergenic 45.0%
TATATCACTACCTCAGCGGA+TGG - Chr1:22364505-22364524 MsG0180001503.01.T01:CDS 45.0%
TCCGCTGAGGTAGTGATATA+AGG + Chr1:22364505-22364524 None:intergenic 45.0%
TTCACTTTCCTCCTTCCCAT+TGG - Chr1:22364352-22364371 MsG0180001503.01.T01:CDS 45.0%
!! CTAAAACAGGGCATTGAGAG+AGG + Chr1:22364915-22364934 None:intergenic 45.0%
!! GAGCAATTACACGTCGCTTT+TGG - Chr1:22364304-22364323 MsG0180001503.01.T01:CDS 45.0%
!!! CTTGACCTTTTGAGACTCCA+CGG - Chr1:22364176-22364195 MsG0180001503.01.T01:CDS 45.0%
ACAACTTGAGTCCTTGGCAG+AGG - Chr1:22364877-22364896 MsG0180001503.01.T01:CDS 50.0%
AGGTAACATGACCTCTGCCA+AGG + Chr1:22364891-22364910 None:intergenic 50.0%
CATTCTTGCCTCCTGAAACG+TGG - Chr1:22364282-22364301 MsG0180001503.01.T01:CDS 50.0%
CTCACTGCATTTCCAGTGGA+AGG - Chr1:22364209-22364228 MsG0180001503.01.T01:CDS 50.0%
CTTTCCTCCTTCCCATTGGA+TGG - Chr1:22364356-22364375 MsG0180001503.01.T01:CDS 50.0%
GAAGACCGTGGAGTCTCAAA+AGG + Chr1:22364184-22364203 None:intergenic 50.0%
GCAATTGCTGCCCATTTCCT+TGG - Chr1:22364754-22364773 MsG0180001503.01.T01:CDS 50.0%
TTGGAGGGTTGAGGGGTTAT+AGG + Chr1:22364456-22364475 None:intergenic 50.0%
!! AACAGGGCATTGAGAGAGGA+AGG + Chr1:22364911-22364930 None:intergenic 50.0%
CAGTGAGAGATGGAAGACCG+TGG + Chr1:22364196-22364215 None:intergenic 55.0%
GAAGTGGGTAGACCTTCCAC+TGG + Chr1:22364224-22364243 None:intergenic 55.0%
!! GTGAGGGTGTCCATCCGCTG+AGG + Chr1:22364518-22364537 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 22364155 22364934 22364155 ID=MsG0180001503.01;Name=MsG0180001503.01
Chr1 mRNA 22364155 22364934 22364155 ID=MsG0180001503.01.T01;Parent=MsG0180001503.01;Name=MsG0180001503.01.T01;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|0|1|0|259
Chr1 exon 22364155 22364934 22364155 ID=MsG0180001503.01.T01:exon:432;Parent=MsG0180001503.01.T01
Chr1 CDS 22364155 22364934 22364155 ID=MsG0180001503.01.T01:cds;Parent=MsG0180001503.01.T01
Gene Sequence

>MsG0180001503.01.T01

ATGATTTTGAGCAGCAGTTGTCTTGACCTTTTGAGACTCCACGGTCTTCCATCTCTCACTGCATTTCCAGTGGAAGGTCTACCCACTTCTTTGAAGTCACTTCATATTTATGATTGCAAGGAGTTATCATTCTTGCCTCCTGAAACGTGGAGCAATTACACGTCGCTTTTGGAGTTGAATTTAGACGGTAGCTGTGGTTCACTTTCCTCCTTCCCATTGGATGGTTTTCCTAAGCTCCAAGATCTTGTCATTAATGGTTGTATTGGTCTGGAATCCATTTTTGTTTCAGAAAGTTCTTCCTATAACCCCTCAACCCTCCAAAAACTTTGTGTATTTTCATGTAAAGCCCTTATATCACTACCTCAGCGGATGGACACCCTCACCAATCTTGAAAGTTTGTATCTCCACCATCTTCCAAAACTAGAGTTTGCACTATGTGAAGGAGTTTTCTTACCTCCCAAATTACAAACAATTTCTATTACATCTGTGAGAATAACAAAGATGCCGCCATTAATTGAATGGGGTTTCCAAAGCCTTACTTCTCTTACAAATTTGTACATTGAAGATAATGATGATATTGTTCACACCTTGTTGAAGGAGCAATTGCTGCCCATTTCCTTGGTGTTTCTGTCAATAAGTAATCTCTCTGAAATGAAATGGTTAGGTGGAAATGGGCTTCAACACCTCTCCTCTCTTGAAACACTTAATTTTAATACTTGTCAACAACTTGAGTCCTTGGCAGAGGTCATGTTACCTTCCTCTCTCAATGCCCTGTTTTAG

Protein sequence

>MsG0180001503.01.T01

MILSSSCLDLLRLHGLPSLTAFPVEGLPTSLKSLHIYDCKELSFLPPETWSNYTSLLELNLDGSCGSLSSFPLDGFPKLQDLVINGCIGLESIFVSESSSYNPSTLQKLCVFSCKALISLPQRMDTLTNLESLYLHHLPKLEFALCEGVFLPPKLQTISITSVRITKMPPLIEWGFQSLTSLTNLYIEDNDDIVHTLLKEQLLPISLVFLSISNLSEMKWLGGNGLQHLSSLETLNFNTCQQLESLAEVMLPSSLNALF*