Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022298.01.T01 | XP_003608087.1 | 87.728 | 383 | 17 | 1 | 12 | 394 | 12 | 364 | 0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022298.01.T01 | Q43725 | 66.755 | 379 | 94 | 2 | 17 | 393 | 81 | 429 | 8.45E-171 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022298.01.T01 | G7JNN6 | 87.728 | 383 | 17 | 1 | 12 | 394 | 12 | 364 | 0.0 | 671 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048889.01 | MsG0480022298.01 | 0.820978 | 5.153475e-53 | 4.139798e-50 |
| MsG0180000551.01 | MsG0480022298.01 | 0.833796 | 4.340560e-56 | 5.052951e-53 |
| MsG0180001513.01 | MsG0480022298.01 | 0.803724 | 3.041487e-49 | 1.539650e-46 |
| MsG0180001515.01 | MsG0480022298.01 | 0.803193 | 3.917812e-49 | 1.956482e-46 |
| MsG0180003484.01 | MsG0480022298.01 | 0.805058 | 1.603389e-49 | 8.400473e-47 |
| MsG0180003849.01 | MsG0480022298.01 | 0.833342 | 5.636681e-56 | 6.473405e-53 |
| MsG0180006174.01 | MsG0480022298.01 | 0.815221 | 1.032882e-51 | 7.078593e-49 |
| MsG0180006191.01 | MsG0480022298.01 | 0.839344 | 1.676101e-57 | 2.308070e-54 |
| MsG0280010854.01 | MsG0480022298.01 | -0.804778 | 1.834734e-49 | 9.543570e-47 |
| MsG0280011267.01 | MsG0480022298.01 | 0.816289 | 5.969903e-52 | 4.213305e-49 |
| MsG0380012889.01 | MsG0480022298.01 | 0.838482 | 2.801997e-57 | 3.757939e-54 |
| MsG0380012900.01 | MsG0480022298.01 | 0.805109 | 1.564771e-49 | 8.208693e-47 |
| MsG0380013226.01 | MsG0480022298.01 | 0.805909 | 1.063043e-49 | 5.692643e-47 |
| MsG0380014293.01 | MsG0480022298.01 | 0.805903 | 1.066370e-49 | 5.709475e-47 |
| MsG0480018559.01 | MsG0480022298.01 | 0.811729 | 6.052155e-51 | 3.775322e-48 |
| MsG0480018622.01 | MsG0480022298.01 | 0.817635 | 2.977436e-52 | 2.180006e-49 |
| MsG0480019666.01 | MsG0480022298.01 | 0.836747 | 7.805569e-57 | 9.928768e-54 |
| MsG0480020904.01 | MsG0480022298.01 | 0.817730 | 2.834177e-52 | 2.080624e-49 |
| MsG0480021151.01 | MsG0480022298.01 | -0.802693 | 4.969242e-49 | 2.450079e-46 |
| MsG0480022298.01 | MsG0480022428.01 | 0.824108 | 9.650154e-54 | 8.467324e-51 |
| MsG0480022298.01 | MsG0480022833.01 | 0.805150 | 1.533491e-49 | 8.053381e-47 |
| MsG0480022298.01 | MsG0480023322.01 | 0.828757 | 7.529434e-55 | 7.552926e-52 |
| MsG0480022298.01 | MsG0580025961.01 | 0.805388 | 1.367592e-49 | 7.225866e-47 |
| MsG0480022298.01 | MsG0580028013.01 | -0.801557 | 8.511351e-49 | 4.076903e-46 |
| MsG0480022298.01 | MsG0580028397.01 | -0.806607 | 7.578443e-50 | 4.131056e-47 |
| MsG0480022298.01 | MsG0580028403.01 | -0.810485 | 1.126219e-50 | 6.797053e-48 |
| MsG0480022298.01 | MsG0580028565.01 | 0.827072 | 1.914849e-54 | 1.828928e-51 |
| MsG0480022298.01 | MsG0680030296.01 | 0.831751 | 1.397652e-55 | 1.531026e-52 |
| MsG0480022298.01 | MsG0680032343.01 | 0.802129 | 6.494419e-49 | 3.156338e-46 |
| MsG0480022298.01 | MsG0680034974.01 | 0.818220 | 2.195718e-52 | 1.633669e-49 |
| MsG0480022298.01 | MsG0780036259.01 | 0.812120 | 4.974811e-51 | 3.135960e-48 |
| MsG0480022298.01 | MsG0780038305.01 | 0.809122 | 2.211825e-50 | 1.287758e-47 |
| MsG0480022298.01 | MsG0780038307.01 | 0.838740 | 2.402484e-57 | 3.247641e-54 |
| MsG0480022298.01 | MsG0780038519.01 | 0.804555 | 2.042032e-49 | 1.056046e-46 |
| MsG0480022298.01 | MsG0780038914.01 | 0.821817 | 3.300288e-53 | 2.713909e-50 |
| MsG0480022298.01 | MsG0780039237.01 | 0.819003 | 1.459198e-52 | 1.109551e-49 |
| MsG0480022298.01 | MsG0780039916.01 | 0.850960 | 1.210991e-60 | 2.413170e-57 |
| MsG0480022298.01 | MsG0780041036.01 | 0.822043 | 2.925919e-53 | 2.421383e-50 |
| MsG0480022298.01 | MsG0780041180.01 | 0.818537 | 1.860996e-52 | 1.396876e-49 |
| MsG0480022298.01 | MsG0780041403.01 | 0.807224 | 5.611841e-50 | 3.108373e-47 |
| MsG0480022298.01 | MsG0880042122.01 | 0.801401 | 9.163902e-49 | 4.372113e-46 |
| MsG0480022298.01 | MsG0880042633.01 | 0.846190 | 2.537562e-59 | 4.332342e-56 |
| MsG0480022298.01 | MsG0880042644.01 | 0.827864 | 1.236377e-54 | 1.208534e-51 |
| MsG0480022298.01 | MsG0880043953.01 | 0.817515 | 3.168171e-52 | 2.312196e-49 |
| MsG0480022298.01 | MsG0880045851.01 | 0.831541 | 1.574269e-55 | 1.713755e-52 |
| MsG0480022298.01 | MsG0880045852.01 | 0.819837 | 9.418749e-53 | 7.329349e-50 |
| MsG0480022298.01 | MsG0880045854.01 | 0.824962 | 6.072599e-54 | 5.460936e-51 |
| MsG0480022298.01 | MsG0880046137.01 | 0.816409 | 5.612206e-52 | 3.973510e-49 |
| MsG0480022298.01 | MsG0880046945.01 | 0.806385 | 8.439656e-50 | 4.574517e-47 |
| MsG0480022298.01 | MsG0880047714.01 | 0.815145 | 1.074294e-51 | 7.346974e-49 |
| MsG0380015711.01 | MsG0480022298.01 | 0.803855 | 2.855860e-49 | 1.450655e-46 |
| MsG0380016065.01 | MsG0480022298.01 | -0.808006 | 3.828558e-50 | 2.164291e-47 |
| MsG0380017102.01 | MsG0480022298.01 | 0.813215 | 2.865418e-51 | 1.859768e-48 |
| MsG0380017901.01 | MsG0480022298.01 | 0.820686 | 6.015787e-53 | 4.792582e-50 |
| MsG0380017992.01 | MsG0480022298.01 | 0.819772 | 9.746100e-53 | 7.570512e-50 |
| MsG0280007199.01 | MsG0480022298.01 | 0.802424 | 5.647319e-49 | 2.765498e-46 |
| MsG0280009232.01 | MsG0480022298.01 | 0.808139 | 3.587433e-50 | 2.035137e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180005607.01 | MsG0480022298.01 | PPI |
| MsG0380016244.01 | MsG0480022298.01 | PPI |
| MsG0580024141.01 | MsG0480022298.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022298.01.T01 | MTR_4g087490 | 87.728 | 383 | 17 | 1 | 12 | 394 | 12 | 364 | 0.0 | 671 |
| MsG0480022298.01.T01 | MTR_4g087510 | 80.457 | 394 | 38 | 3 | 1 | 394 | 1 | 355 | 0.0 | 626 |
| MsG0480022298.01.T01 | MTR_4g087520 | 82.593 | 270 | 47 | 0 | 125 | 394 | 1 | 270 | 1.64e-154 | 437 |
| MsG0480022298.01.T01 | MTR_5g006340 | 63.324 | 349 | 98 | 1 | 46 | 394 | 7 | 325 | 2.69e-144 | 413 |
| MsG0480022298.01.T01 | MTR_1g103690 | 63.506 | 348 | 97 | 1 | 47 | 394 | 8 | 325 | 8.46e-144 | 412 |
| MsG0480022298.01.T01 | MTR_1g081610 | 64.368 | 348 | 94 | 1 | 43 | 390 | 4 | 321 | 1.01e-143 | 411 |
| MsG0480022298.01.T01 | MTR_1g081620 | 57.558 | 344 | 116 | 1 | 47 | 390 | 7 | 320 | 2.06e-135 | 390 |
| MsG0480022298.01.T01 | MTR_1g081625 | 57.267 | 344 | 117 | 1 | 47 | 390 | 7 | 320 | 4.86e-130 | 377 |
| MsG0480022298.01.T01 | MTR_7g087110 | 52.231 | 381 | 139 | 3 | 10 | 390 | 31 | 368 | 5.37e-128 | 373 |
| MsG0480022298.01.T01 | MTR_7g078070 | 54.179 | 347 | 129 | 1 | 46 | 392 | 60 | 376 | 3.78e-127 | 371 |
| MsG0480022298.01.T01 | MTR_7g078070 | 54.706 | 340 | 124 | 1 | 53 | 392 | 7 | 316 | 1.98e-125 | 365 |
| MsG0480022298.01.T01 | MTR_7g078070 | 61.011 | 277 | 107 | 1 | 117 | 392 | 7 | 283 | 8.29e-117 | 342 |
| MsG0480022298.01.T01 | MTR_1g081640 | 54.221 | 308 | 111 | 1 | 47 | 354 | 7 | 284 | 7.69e-103 | 307 |
| MsG0480022298.01.T01 | MTR_5g095670 | 26.753 | 385 | 193 | 9 | 49 | 376 | 46 | 398 | 8.71e-32 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022298.01.T01 | AT3G59760 | 66.755 | 379 | 94 | 2 | 17 | 393 | 81 | 429 | 8.61e-172 | 487 |
| MsG0480022298.01.T01 | AT3G59760 | 66.755 | 379 | 94 | 2 | 17 | 393 | 81 | 429 | 1.07e-171 | 486 |
| MsG0480022298.01.T01 | AT2G43750 | 67.877 | 358 | 85 | 1 | 36 | 393 | 64 | 391 | 5.70e-168 | 476 |
| MsG0480022298.01.T01 | AT2G43750 | 67.877 | 358 | 85 | 1 | 36 | 393 | 64 | 391 | 5.70e-168 | 476 |
| MsG0480022298.01.T01 | AT3G59760 | 65.527 | 351 | 89 | 2 | 17 | 365 | 81 | 401 | 2.45e-152 | 437 |
| MsG0480022298.01.T01 | AT4G14880 | 59.654 | 347 | 110 | 1 | 47 | 393 | 5 | 321 | 4.76e-139 | 399 |
| MsG0480022298.01.T01 | AT4G14880 | 59.654 | 347 | 110 | 1 | 47 | 393 | 5 | 321 | 4.76e-139 | 399 |
| MsG0480022298.01.T01 | AT4G14880 | 59.654 | 347 | 110 | 1 | 47 | 393 | 5 | 321 | 4.76e-139 | 399 |
| MsG0480022298.01.T01 | AT4G14880 | 59.654 | 347 | 110 | 1 | 47 | 393 | 5 | 321 | 4.76e-139 | 399 |
| MsG0480022298.01.T01 | AT4G14880 | 59.654 | 347 | 110 | 1 | 47 | 393 | 5 | 321 | 4.76e-139 | 399 |
| MsG0480022298.01.T01 | AT3G04940 | 58.046 | 348 | 116 | 1 | 43 | 390 | 4 | 321 | 2.62e-131 | 380 |
| MsG0480022298.01.T01 | AT3G04940 | 58.046 | 348 | 116 | 1 | 43 | 390 | 4 | 321 | 2.62e-131 | 380 |
| MsG0480022298.01.T01 | AT5G28020 | 58.046 | 348 | 116 | 1 | 43 | 390 | 3 | 320 | 2.08e-130 | 377 |
| MsG0480022298.01.T01 | AT5G28020 | 58.046 | 348 | 116 | 1 | 43 | 390 | 3 | 320 | 2.08e-130 | 377 |
| MsG0480022298.01.T01 | AT5G28020 | 58.046 | 348 | 116 | 1 | 43 | 390 | 3 | 320 | 2.08e-130 | 377 |
| MsG0480022298.01.T01 | AT5G28020 | 58.046 | 348 | 116 | 1 | 43 | 390 | 3 | 320 | 2.08e-130 | 377 |
| MsG0480022298.01.T01 | AT5G28020 | 58.046 | 348 | 116 | 1 | 43 | 390 | 3 | 320 | 2.08e-130 | 377 |
| MsG0480022298.01.T01 | AT5G28030 | 56.695 | 351 | 122 | 1 | 43 | 393 | 3 | 323 | 1.86e-127 | 370 |
| MsG0480022298.01.T01 | AT5G28030 | 56.695 | 351 | 122 | 1 | 43 | 393 | 3 | 323 | 1.86e-127 | 370 |
| MsG0480022298.01.T01 | AT5G28030 | 56.695 | 351 | 122 | 1 | 43 | 393 | 3 | 323 | 1.86e-127 | 370 |
| MsG0480022298.01.T01 | AT5G28030 | 56.695 | 351 | 122 | 1 | 43 | 393 | 3 | 323 | 1.86e-127 | 370 |
| MsG0480022298.01.T01 | AT3G61440 | 49.871 | 389 | 153 | 6 | 14 | 392 | 8 | 364 | 1.78e-120 | 354 |
| MsG0480022298.01.T01 | AT3G22460 | 64.074 | 270 | 77 | 1 | 125 | 394 | 1 | 250 | 1.73e-119 | 347 |
| MsG0480022298.01.T01 | AT3G03630 | 52.571 | 350 | 126 | 2 | 42 | 391 | 94 | 403 | 2.60e-113 | 337 |
| MsG0480022298.01.T01 | AT3G61440 | 58.582 | 268 | 111 | 0 | 125 | 392 | 1 | 268 | 5.17e-110 | 324 |
| MsG0480022298.01.T01 | AT5G28030 | 55.235 | 277 | 94 | 1 | 43 | 319 | 3 | 249 | 5.46e-97 | 290 |
| MsG0480022298.01.T01 | AT3G61440 | 57.851 | 242 | 102 | 0 | 151 | 392 | 2 | 243 | 5.74e-97 | 290 |
| MsG0480022298.01.T01 | AT3G61440 | 48.071 | 337 | 133 | 6 | 14 | 340 | 8 | 312 | 2.26e-95 | 288 |
| MsG0480022298.01.T01 | AT5G28020 | 60.256 | 234 | 93 | 0 | 157 | 390 | 1 | 234 | 1.43e-90 | 273 |
| MsG0480022298.01.T01 | AT3G22460 | 58.768 | 211 | 57 | 1 | 47 | 257 | 8 | 188 | 1.72e-84 | 256 |
| MsG0480022298.01.T01 | AT1G55880 | 25.628 | 398 | 206 | 7 | 37 | 376 | 30 | 395 | 1.41e-33 | 130 |
| MsG0480022298.01.T01 | AT1G55880 | 24.857 | 350 | 174 | 6 | 37 | 328 | 30 | 348 | 4.50e-28 | 113 |
Find 118 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCGGTGGAACTCTTTC+TGG | 0.174287 | 4:+70827715 | MsG0480022298.01.T01:CDS |
| TGCTGCTACAGCTGCATTGC+AGG | 0.226091 | 4:+70828458 | MsG0480022298.01.T01:CDS |
| TGCTGCTAAGCTTGAGCTTA+TGG | 0.244545 | 4:+70826493 | MsG0480022298.01.T01:CDS |
| CACTAACCAGCAAGCCTTCC+TGG | 0.248330 | 4:-70828229 | None:intergenic |
| CACATTCTTCTCGAGCTTCC+TGG | 0.248992 | 4:-70828817 | None:intergenic |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4:+70827874 | MsG0480022298.01.T01:CDS |
| GATTTCTTTATCCAAATTCT+TGG | 0.286384 | 4:-70828041 | None:intergenic |
| CACACATAATTCAGGGTATT+GGG | 0.300262 | 4:+70828005 | MsG0480022298.01.T01:CDS |
| GTATGCACTTCAGAGTATTT+TGG | 0.302707 | 4:+70827363 | MsG0480022298.01.T01:intron |
| CACAGGACCACACATAATTC+AGG | 0.307785 | 4:+70827997 | MsG0480022298.01.T01:intron |
| CCTTGGGTGGGTTGTCTCCT+AGG | 0.310476 | 4:+70829080 | MsG0480022298.01.T01:three_prime_UTR |
| AGAGTTCTTATGAAAGCATT+TGG | 0.314655 | 4:+70827490 | MsG0480022298.01.T01:CDS |
| GAGATCATCGTTGCTGGTTT+GGG | 0.333139 | 4:-70826289 | None:intergenic |
| CTATGAGTGTTAGCTTTCCT+TGG | 0.338136 | 4:+70828966 | MsG0480022298.01.T01:three_prime_UTR |
| ACCTTTAGTAGCTGCTATAA+AGG | 0.342177 | 4:-70827422 | None:intergenic |
| CTTTCTAAACTCATTGAAAC+AGG | 0.346381 | 4:-70827466 | None:intergenic |
| TTTGTATCTTTCCATATCTC+TGG | 0.353997 | 4:-70827661 | None:intergenic |
| TGAGATCATCGTTGCTGGTT+TGG | 0.382543 | 4:-70826290 | None:intergenic |
| AGAATACTGGGCCAGAGATA+TGG | 0.384193 | 4:+70827650 | MsG0480022298.01.T01:CDS |
| TCTTTGTCCAAGCAAAATAA+TGG | 0.384507 | 4:-70828930 | None:intergenic |
| ACCGGTGGGAACACAGGAAT+TGG | 0.391141 | 4:+70827394 | MsG0480022298.01.T01:CDS |
| GAACGTGTAAAATTGTTTCA+TGG | 0.403579 | 4:-70828857 | None:intergenic |
| TTCCTTGGATTTCCATCACT+TGG | 0.404405 | 4:+70828981 | MsG0480022298.01.T01:three_prime_UTR |
| AGCCCTTAGTGATACTCTTC+AGG | 0.405705 | 4:-70826457 | None:intergenic |
| ACTCATAGCCTTGGAATATT+CGG | 0.408095 | 4:-70827530 | None:intergenic |
| AGCACTCCAGGAAGGCTTGC+TGG | 0.419636 | 4:+70828223 | MsG0480022298.01.T01:CDS |
| GTATTCTCATAATGCACCTT+AGG | 0.423127 | 4:-70827634 | None:intergenic |
| AATATTGAGATCATCGTTGC+TGG | 0.427113 | 4:-70826295 | None:intergenic |
| ATTTCTTTATCCAAATTCTT+GGG | 0.427230 | 4:-70828040 | None:intergenic |
| CCTTACAACATGGTGTATAA+TGG | 0.427506 | 4:-70829258 | None:intergenic |
| TAATGCACCTTAGGATTTGA+AGG | 0.427650 | 4:-70827625 | None:intergenic |
| CATATCTTTCACCGAAGCTT+GGG | 0.435988 | 4:-70828778 | None:intergenic |
| GGCACTCTTGCTTTGTATTG+TGG | 0.436042 | 4:+70829002 | MsG0480022298.01.T01:three_prime_UTR |
| TGTTGGTTAGTGTTAGTCAA+TGG | 0.439895 | 4:+70826638 | MsG0480022298.01.T01:intron |
| CCATTATACACCATGTTGTA+AGG | 0.440027 | 4:+70829258 | MsG0480022298.01.T01:three_prime_UTR |
| CCCGACCTCTGTAATATCAT+TGG | 0.441944 | 4:-70826319 | None:intergenic |
| GTTTGGGATTCGACAAAGGC+AGG | 0.443433 | 4:-70826273 | None:intergenic |
| TTAGTCTCGGCAATTGGAAC+CGG | 0.448696 | 4:+70827700 | MsG0480022298.01.T01:CDS |
| TGTTGAAGCATGTATGCATT+AGG | 0.450753 | 4:-70827592 | None:intergenic |
| AGCTGAAACGGTGGCTGGTA+CGG | 0.450973 | 4:-70826227 | None:intergenic |
| AACTGCTCCACTCATAGCCT+TGG | 0.451930 | 4:-70827539 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+CGG | 0.453220 | 4:+70828767 | MsG0480022298.01.T01:intron |
| GCCTTTATAGCAGCTACTAA+AGG | 0.455275 | 4:+70827421 | MsG0480022298.01.T01:CDS |
| ACATATCTTTCACCGAAGCT+TGG | 0.458571 | 4:-70828779 | None:intergenic |
| CCACACATAATTCAGGGTAT+TGG | 0.460806 | 4:+70828004 | MsG0480022298.01.T01:CDS |
| GTAAAATTGTTTCATGGCTC+CGG | 0.463120 | 4:-70828851 | None:intergenic |
| GCTAACACTCATAGAAGAAT+CGG | 0.468920 | 4:-70828957 | None:intergenic |
| AAACAGGTGGGAATTTCCTC+AGG | 0.469541 | 4:+70828432 | MsG0480022298.01.T01:intron |
| TGCTTACATGCACAGCTCAT+AGG | 0.475577 | 4:+70826416 | MsG0480022298.01.T01:intron |
| AAGGTGCATTATGAGAATAC+TGG | 0.479612 | 4:+70827637 | MsG0480022298.01.T01:CDS |
| GCACGAAATACACGAGATCA+TGG | 0.481442 | 4:-70826096 | None:intergenic |
| TGATAATCCTTCAAATCCTA+AGG | 0.485123 | 4:+70827618 | MsG0480022298.01.T01:CDS |
| GATATTATTAAAAGAAGATA+AGG | 0.491700 | 4:-70826124 | None:intergenic |
| GTTGGTTAGTGTTAGTCAAT+GGG | 0.492644 | 4:+70826639 | MsG0480022298.01.T01:intron |
| AAAATACAACAGAAACAAAA+CGG | 0.496982 | 4:-70829050 | None:intergenic |
| TGCAAGGCAAATAGCACTCC+AGG | 0.497957 | 4:+70828211 | MsG0480022298.01.T01:CDS |
| TATAAATAGAAAAGAGTACA+AGG | 0.500169 | 4:-70829194 | None:intergenic |
| ATGCATGACTGCATGTCCTC+GGG | 0.505078 | 4:-70826676 | None:intergenic |
| TCGACCACTTGTACAAAATA+CGG | 0.506189 | 4:-70828902 | None:intergenic |
| AGAATGTGAGAAAATGCAAC+CGG | 0.512076 | 4:+70828832 | MsG0480022298.01.T01:CDS |
| AGATCCTGGTTGAGCTGAAA+CGG | 0.512803 | 4:-70826239 | None:intergenic |
| GAAGAAGCCATTGTTGCTTG+TGG | 0.514767 | 4:-70826165 | None:intergenic |
| CAATGTGACATGCCTATGTT+AGG | 0.517744 | 4:+70829286 | MsG0480022298.01.T01:three_prime_UTR |
| TTGGGATTCGACAAAGGCAG+GGG | 0.517966 | 4:-70826271 | None:intergenic |
| CAGAAAGGACTCATAACACC+TGG | 0.522023 | 4:+70827228 | MsG0480022298.01.T01:CDS |
| TATGCATGACTGCATGTCCT+CGG | 0.522819 | 4:-70826677 | None:intergenic |
| ATAATTCAGGGTATTGGGGC+TGG | 0.523924 | 4:+70828010 | MsG0480022298.01.T01:CDS |
| TGCTAAGAGACCTGAAAATG+AGG | 0.527044 | 4:+70828482 | MsG0480022298.01.T01:CDS |
| GTCTCGGCAATTGGAACCGG+TGG | 0.532547 | 4:+70827703 | MsG0480022298.01.T01:CDS |
| GAGATATGGAAAGATACAAA+AGG | 0.534527 | 4:+70827664 | MsG0480022298.01.T01:CDS |
| GGTGGAACTCTTTCTGGAGC+TGG | 0.534617 | 4:+70827721 | MsG0480022298.01.T01:CDS |
| CATGTTGCAGTGTCAAAGAC+AGG | 0.537458 | 4:+70826519 | MsG0480022298.01.T01:CDS |
| TGTTATGAGTCCTTTCTGCT+CGG | 0.547510 | 4:-70827223 | None:intergenic |
| AGGGGAAGATGAAAAGATCC+TGG | 0.553418 | 4:-70826253 | None:intergenic |
| ACAAGTAAAAGACTTGACTA+AGG | 0.556177 | 4:-70826190 | None:intergenic |
| AGCTCCAGAAAGAGTTCCAC+CGG | 0.558578 | 4:-70827719 | None:intergenic |
| CATTGTCATGCCTTACAACA+TGG | 0.559631 | 4:-70829268 | None:intergenic |
| GGCGACGACAATAACAAAAG+TGG | 0.560281 | 4:-70829029 | None:intergenic |
| AAAGCAAGAGTGCCAAGTGA+TGG | 0.563208 | 4:-70828993 | None:intergenic |
| AGGTGCATTATGAGAATACT+GGG | 0.564800 | 4:+70827638 | MsG0480022298.01.T01:CDS |
| ACAGGACCACACATAATTCA+GGG | 0.566612 | 4:+70827998 | MsG0480022298.01.T01:intron |
| ACCAATTCCTGTGTTCCCAC+CGG | 0.567362 | 4:-70827395 | None:intergenic |
| AAATGAGAAACGCCTAACAT+AGG | 0.568460 | 4:-70829298 | None:intergenic |
| TTACCTGAAGAGTATCACTA+AGG | 0.569604 | 4:+70826454 | MsG0480022298.01.T01:CDS |
| GAATTCTCCACAAGCAACAA+TGG | 0.571120 | 4:+70826158 | MsG0480022298.01.T01:exon |
| GGTTGAGCTGAAACGGTGGC+TGG | 0.574406 | 4:-70826232 | None:intergenic |
| ATTCTTGATGCCGAGCAGAA+AGG | 0.581925 | 4:+70827213 | MsG0480022298.01.T01:CDS |
| TTTGGGATTCGACAAAGGCA+GGG | 0.588345 | 4:-70826272 | None:intergenic |
| TTGAAAATGTGTCTAAAACA+TGG | 0.589637 | 4:-70828879 | None:intergenic |
| GAACCTACCGGTGGGAACAC+AGG | 0.590747 | 4:+70827388 | MsG0480022298.01.T01:CDS |
| CTACGTATCAATCAGTGCAT+CGG | 0.594890 | 4:+70827841 | MsG0480022298.01.T01:intron |
| AGTATAGTTAGAAAATTCCC+TGG | 0.596401 | 4:+70829327 | MsG0480022298.01.T01:three_prime_UTR |
| ATACTCTTCAGGTAAACCAT+TGG | 0.603385 | 4:-70826446 | None:intergenic |
| AGGACTCATAACACCTGGGA+AGG | 0.604876 | 4:+70827233 | MsG0480022298.01.T01:CDS |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4:-70827871 | None:intergenic |
| ACACATAATTCAGGGTATTG+GGG | 0.608497 | 4:+70828006 | MsG0480022298.01.T01:CDS |
| CTGTCTTTGACACTGCAACA+TGG | 0.615946 | 4:-70826518 | None:intergenic |
| TCCTGGTTGAGCTGAAACGG+TGG | 0.618636 | 4:-70826236 | None:intergenic |
| GCTAAGAGACCTGAAAATGA+GGG | 0.619429 | 4:+70828483 | MsG0480022298.01.T01:CDS |
| TACCTGAAGAGTATCACTAA+GGG | 0.627372 | 4:+70826455 | MsG0480022298.01.T01:CDS |
| GAATATTCCAAGGCTATGAG+TGG | 0.632482 | 4:+70827532 | MsG0480022298.01.T01:CDS |
| GCTGGTTTGGGATTCGACAA+AGG | 0.632618 | 4:-70826277 | None:intergenic |
| AGACCGCTATAACTTCATCA+AGG | 0.636275 | 4:-70828063 | None:intergenic |
| GCCACCGTTTCAGCTCAACC+AGG | 0.639745 | 4:+70826235 | MsG0480022298.01.T01:CDS |
| TGCCAAGTGATGGAAATCCA+AGG | 0.640604 | 4:-70828983 | None:intergenic |
| GTTTCTGTTTGTTTGCAGTG+TGG | 0.642960 | 4:+70829146 | MsG0480022298.01.T01:three_prime_UTR |
| CCTAGGAGACAACCCACCCA+AGG | 0.644420 | 4:-70829080 | None:intergenic |
| AAGAATCTGTCAAAACTGCA+AGG | 0.645155 | 4:+70828195 | MsG0480022298.01.T01:CDS |
| ATTCCTGTGTTCCCACCGGT+AGG | 0.651234 | 4:-70827391 | None:intergenic |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4:+70827877 | MsG0480022298.01.T01:CDS |
| AAATGAGGGAAAGCTTATTG+TGG | 0.653863 | 4:+70828497 | MsG0480022298.01.T01:CDS |
| AGCTGTAGCAGCACAACCTG+AGG | 0.655976 | 4:-70828448 | None:intergenic |
| AATCCTTGATGAAGTTATAG+CGG | 0.663239 | 4:+70828060 | MsG0480022298.01.T01:CDS |
| AGGCAAATAGCACTCCAGGA+AGG | 0.669487 | 4:+70828215 | MsG0480022298.01.T01:CDS |
| AACACTCATAGAAGAATCGG+AGG | 0.674248 | 4:-70828954 | None:intergenic |
| CCAATACCCTGAATTATGTG+TGG | 0.679263 | 4:-70828004 | None:intergenic |
| AGAAAGGACTCATAACACCT+GGG | 0.699620 | 4:+70827229 | MsG0480022298.01.T01:CDS |
| TATTGCCAATGATATTACAG+AGG | 0.723357 | 4:+70826314 | MsG0480022298.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTATGCTTTAATATA+TGG | - | Chr4:70828334-70828353 | None:intergenic | 10.0% |
| !! | CTATTATTAGTATAAAAATA+TGG | - | Chr4:70826840-70826859 | None:intergenic | 10.0% |
| !! | TAAAAAAAATTACTTATGTA+AGG | + | Chr4:70828537-70828556 | MsG0480022298.01.T01:intron | 10.0% |
| !!! | ATAAGTAATTTTTTTTAATG+CGG | - | Chr4:70828534-70828553 | None:intergenic | 10.0% |
| !! | AACTTATTATATTTCTTACT+TGG | - | Chr4:70827907-70827926 | None:intergenic | 15.0% |
| !! | ATAATAGTAGTAGATAATTT+CGG | + | Chr4:70826853-70826872 | MsG0480022298.01.T01:intron | 15.0% |
| !! | ATTAAAGCATAATTAATGAA+GGG | + | Chr4:70828337-70828356 | MsG0480022298.01.T01:intron | 15.0% |
| !! | CAATAAATAAAAAAATTGTG+AGG | - | Chr4:70828747-70828766 | None:intergenic | 15.0% |
| !! | GATATTATTAAAAGAAGATA+AGG | - | Chr4:70826127-70826146 | None:intergenic | 15.0% |
| !! | TAGAATATAAACCTTAAATT+TGG | + | Chr4:70826751-70826770 | MsG0480022298.01.T01:intron | 15.0% |
| !! | TATTAAAGCATAATTAATGA+AGG | + | Chr4:70828336-70828355 | MsG0480022298.01.T01:intron | 15.0% |
| !!! | AATTTAAGGTTTATATTCTA+AGG | - | Chr4:70826751-70826770 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTTATTTATTGC+AGG | + | Chr4:70828748-70828767 | MsG0480022298.01.T01:intron | 15.0% |
| !!! | TTCTTTCTTTTTAAACATTT+TGG | + | Chr4:70826575-70826594 | MsG0480022298.01.T01:intron | 15.0% |
| !! | AAAATACAACAGAAACAAAA+CGG | - | Chr4:70829053-70829072 | None:intergenic | 20.0% |
| !! | ACAACAAAATCCAAAAATAA+AGG | + | Chr4:70827756-70827775 | MsG0480022298.01.T01:CDS | 20.0% |
| !! | ATATCAGCTAATTAATTGTA+AGG | - | Chr4:70826976-70826995 | None:intergenic | 20.0% |
| !! | ATTTCTTTATCCAAATTCTT+GGG | - | Chr4:70828043-70828062 | None:intergenic | 20.0% |
| !! | GTAGAGAATAAAATGTTAAA+TGG | - | Chr4:70827825-70827844 | None:intergenic | 20.0% |
| !! | TTTGTTTCATTTCTATTTGT+TGG | + | Chr4:70826621-70826640 | MsG0480022298.01.T01:intron | 20.0% |
| !!! | AAATGTCTCTTTTTTCTTAA+TGG | - | Chr4:70829234-70829253 | None:intergenic | 20.0% |
| !!! | GAATGATTTACCTTTATTTT+TGG | - | Chr4:70827769-70827788 | None:intergenic | 20.0% |
| !!! | TATAAATAGAAAAGAGTACA+AGG | - | Chr4:70829197-70829216 | None:intergenic | 20.0% |
| !!! | TTATTTTATTGTTTCTGCTT+TGG | + | Chr4:70827162-70827181 | MsG0480022298.01.T01:intron | 20.0% |
| !!! | TTGTATTTTCTTTTTTCCTT+GGG | + | Chr4:70829064-70829083 | MsG0480022298.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTGGATTTTGTTGTTTT+AGG | - | Chr4:70827753-70827772 | None:intergenic | 20.0% |
| ! | ATAACAGAATATGATCAGAT+TGG | - | Chr4:70828629-70828648 | None:intergenic | 25.0% |
| ! | ATCAGATAAAAGCTCTTTAA+AGG | - | Chr4:70827959-70827978 | None:intergenic | 25.0% |
| ! | ATTTCGGCTAAATAATTGTA+AGG | + | Chr4:70826869-70826888 | MsG0480022298.01.T01:intron | 25.0% |
| ! | CACTTATATGCAAATTTATG+TGG | - | Chr4:70827110-70827129 | None:intergenic | 25.0% |
| ! | GATTATTCAGAATAATGCAT+TGG | - | Chr4:70828122-70828141 | None:intergenic | 25.0% |
| ! | GATTGTTAATTACTTGTTTC+TGG | + | Chr4:70827341-70827360 | MsG0480022298.01.T01:intron | 25.0% |
| ! | GATTTCTTTATCCAAATTCT+TGG | - | Chr4:70828044-70828063 | None:intergenic | 25.0% |
| ! | TGGTATCAATGATGTTATAT+CGG | + | Chr4:70826907-70826926 | MsG0480022298.01.T01:intron | 25.0% |
| ! | TTGTAAGGAATAAATGTTGT+TGG | + | Chr4:70826884-70826903 | MsG0480022298.01.T01:intron | 25.0% |
| ! | TTTACCTAAATTCTTACCAT+TGG | + | Chr4:70828408-70828427 | MsG0480022298.01.T01:intron | 25.0% |
| ! | TTTGTATCTTGATTAACTGT+TGG | + | Chr4:70828370-70828389 | MsG0480022298.01.T01:intron | 25.0% |
| !! | GTTGTATTTTCTTTTTTCCT+TGG | + | Chr4:70829063-70829082 | MsG0480022298.01.T01:three_prime_UTR | 25.0% |
| !! | TTGAAAATGTGTCTAAAACA+TGG | - | Chr4:70828882-70828901 | None:intergenic | 25.0% |
| !! | TTTTCCAATGGTAAGAATTT+AGG | - | Chr4:70828415-70828434 | None:intergenic | 25.0% |
| !!! | AATTGTTTTTGTTGCTACTT+TGG | + | Chr4:70829103-70829122 | MsG0480022298.01.T01:three_prime_UTR | 25.0% |
| !!! | TCTTTTTTATATACCATCCA+AGG | - | Chr4:70828578-70828597 | None:intergenic | 25.0% |
| AATCCTTGATGAAGTTATAG+CGG | + | Chr4:70828060-70828079 | MsG0480022298.01.T01:CDS | 30.0% | |
| AATTCTTACCATTGGAAAAC+AGG | + | Chr4:70828416-70828435 | MsG0480022298.01.T01:intron | 30.0% | |
| ACAAGTAAAAGACTTGACTA+AGG | - | Chr4:70826193-70826212 | None:intergenic | 30.0% | |
| AGGAAATAACATATCAGACT+TGG | - | Chr4:70827939-70827958 | None:intergenic | 30.0% | |
| CTTTCTAAACTCATTGAAAC+AGG | - | Chr4:70827469-70827488 | None:intergenic | 30.0% | |
| GAACGTGTAAAATTGTTTCA+TGG | - | Chr4:70828860-70828879 | None:intergenic | 30.0% | |
| GAGATATGGAAAGATACAAA+AGG | + | Chr4:70827664-70827683 | MsG0480022298.01.T01:CDS | 30.0% | |
| TAAATGGAAATCAACAAGCT+AGG | - | Chr4:70827809-70827828 | None:intergenic | 30.0% | |
| TAAGGAATAAATGTTGTTGG+TGG | + | Chr4:70826887-70826906 | MsG0480022298.01.T01:intron | 30.0% | |
| TAGCAACAAAAACAATTCCT+AGG | - | Chr4:70829100-70829119 | None:intergenic | 30.0% | |
| TATTGCCAATGATATTACAG+AGG | + | Chr4:70826314-70826333 | MsG0480022298.01.T01:CDS | 30.0% | |
| TCTTTGTCCAAGCAAAATAA+TGG | - | Chr4:70828933-70828952 | None:intergenic | 30.0% | |
| TGATAATCCTTCAAATCCTA+AGG | + | Chr4:70827618-70827637 | MsG0480022298.01.T01:CDS | 30.0% | |
| TTTAATTAATCCACCTTGGA+TGG | + | Chr4:70828562-70828581 | MsG0480022298.01.T01:intron | 30.0% | |
| TTTGTATCTTTCCATATCTC+TGG | - | Chr4:70827664-70827683 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTTTTCCTTGGGT+GGG | + | Chr4:70829068-70829087 | MsG0480022298.01.T01:three_prime_UTR | 30.0% |
| ! | TAGTCAATGGGTGATATTTT+TGG | + | Chr4:70826651-70826670 | MsG0480022298.01.T01:CDS | 30.0% |
| ! | TATTTTCTTTTTTCCTTGGG+TGG | + | Chr4:70829067-70829086 | MsG0480022298.01.T01:three_prime_UTR | 30.0% |
| ! | TTTTTATATACCATCCAAGG+TGG | - | Chr4:70828575-70828594 | None:intergenic | 30.0% |
| !! | AGAGTTCTTATGAAAGCATT+TGG | + | Chr4:70827490-70827509 | MsG0480022298.01.T01:CDS | 30.0% |
| !! | CAAAGTAGACATTTTAGTCT+CGG | + | Chr4:70827687-70827706 | MsG0480022298.01.T01:CDS | 30.0% |
| !!! | ATTTTTTCCTGCTAAATCAC+AGG | + | Chr4:70827980-70827999 | MsG0480022298.01.T01:intron | 30.0% |
| AAATGAGAAACGCCTAACAT+AGG | - | Chr4:70829301-70829320 | None:intergenic | 35.0% | |
| AAATGAGGGAAAGCTTATTG+TGG | + | Chr4:70828497-70828516 | MsG0480022298.01.T01:CDS | 35.0% | |
| AAGAATCTGTCAAAACTGCA+AGG | + | Chr4:70828195-70828214 | MsG0480022298.01.T01:CDS | 35.0% | |
| AAGGTGCATTATGAGAATAC+TGG | + | Chr4:70827637-70827656 | MsG0480022298.01.T01:CDS | 35.0% | |
| AATATTGAGATCATCGTTGC+TGG | - | Chr4:70826298-70826317 | None:intergenic | 35.0% | |
| ACCTTTAGTAGCTGCTATAA+AGG | - | Chr4:70827425-70827444 | None:intergenic | 35.0% | |
| AGAATGTGAGAAAATGCAAC+CGG | + | Chr4:70828832-70828851 | MsG0480022298.01.T01:CDS | 35.0% | |
| AGGTGCATTATGAGAATACT+GGG | + | Chr4:70827638-70827657 | MsG0480022298.01.T01:CDS | 35.0% | |
| ATACTCTTCAGGTAAACCAT+TGG | - | Chr4:70826449-70826468 | None:intergenic | 35.0% | |
| CATGGATGATTGTGTTTGTT+AGG | - | Chr4:70826081-70826100 | None:intergenic | 35.0% | |
| CCATTATACACCATGTTGTA+AGG | + | Chr4:70829258-70829277 | MsG0480022298.01.T01:three_prime_UTR | 35.0% | |
| CCTTACAACATGGTGTATAA+TGG | - | Chr4:70829261-70829280 | None:intergenic | 35.0% | |
| GATAAGACGGTCCAAATTTA+AGG | - | Chr4:70826765-70826784 | None:intergenic | 35.0% | |
| GCTAACACTCATAGAAGAAT+CGG | - | Chr4:70828960-70828979 | None:intergenic | 35.0% | |
| GGAGTTTAATTAATCCACCT+TGG | + | Chr4:70828558-70828577 | MsG0480022298.01.T01:intron | 35.0% | |
| GTAAAATTGTTTCATGGCTC+CGG | - | Chr4:70828854-70828873 | None:intergenic | 35.0% | |
| GTATTCTCATAATGCACCTT+AGG | - | Chr4:70827637-70827656 | None:intergenic | 35.0% | |
| GTTGGTTAGTGTTAGTCAAT+GGG | + | Chr4:70826639-70826658 | MsG0480022298.01.T01:intron | 35.0% | |
| TAATGCACCTTAGGATTTGA+AGG | - | Chr4:70827628-70827647 | None:intergenic | 35.0% | |
| TCGACCACTTGTACAAAATA+CGG | - | Chr4:70828905-70828924 | None:intergenic | 35.0% | |
| TGTTGAAGCATGTATGCATT+AGG | - | Chr4:70827595-70827614 | None:intergenic | 35.0% | |
| TTTCTTGCAATTGACAACAC+TGG | + | Chr4:70827067-70827086 | MsG0480022298.01.T01:intron | 35.0% | |
| ! | AATATGATCAGATTGGCTGA+AGG | - | Chr4:70828622-70828641 | None:intergenic | 35.0% |
| ! | ACTCATAGCCTTGGAATATT+CGG | - | Chr4:70827533-70827552 | None:intergenic | 35.0% |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | - | Chr4:70828495-70828514 | None:intergenic | 35.0% |
| ! | ATATGATCAGATTGGCTGAA+GGG | - | Chr4:70828621-70828640 | None:intergenic | 35.0% |
| ! | CACACATAATTCAGGGTATT+GGG | + | Chr4:70828005-70828024 | MsG0480022298.01.T01:CDS | 35.0% |
| ! | TATTTTGTACAAGTGGTCGA+TGG | + | Chr4:70828905-70828924 | MsG0480022298.01.T01:three_prime_UTR | 35.0% |
| ! | TCAACCGTATTTTGTACAAG+TGG | + | Chr4:70828898-70828917 | MsG0480022298.01.T01:three_prime_UTR | 35.0% |
| ! | TGTTGGTTAGTGTTAGTCAA+TGG | + | Chr4:70826638-70826657 | MsG0480022298.01.T01:intron | 35.0% |
| !! | ACACATAATTCAGGGTATTG+GGG | + | Chr4:70828006-70828025 | MsG0480022298.01.T01:CDS | 35.0% |
| !! | GATGGAACCATTATTTTGCT+TGG | + | Chr4:70828923-70828942 | MsG0480022298.01.T01:three_prime_UTR | 35.0% |
| !! | GTATGCACTTCAGAGTATTT+TGG | + | Chr4:70827363-70827382 | MsG0480022298.01.T01:intron | 35.0% |
| !! | TACCTGAAGAGTATCACTAA+GGG | + | Chr4:70826455-70826474 | MsG0480022298.01.T01:CDS | 35.0% |
| !! | TTACCTGAAGAGTATCACTA+AGG | + | Chr4:70826454-70826473 | MsG0480022298.01.T01:CDS | 35.0% |
| !!! | AGTATTTTGGTAGAACCTAC+CGG | + | Chr4:70827376-70827395 | MsG0480022298.01.T01:CDS | 35.0% |
| !!! | TGTTTTGACCGAATATTCCA+AGG | + | Chr4:70827522-70827541 | MsG0480022298.01.T01:CDS | 35.0% |
| !!! | TGTTTTTGTTGCTACTTTGG+CGG | + | Chr4:70829106-70829125 | MsG0480022298.01.T01:three_prime_UTR | 35.0% |
| AACACTCATAGAAGAATCGG+AGG | - | Chr4:70828957-70828976 | None:intergenic | 40.0% | |
| ACAGGACCACACATAATTCA+GGG | + | Chr4:70827998-70828017 | MsG0480022298.01.T01:intron | 40.0% | |
| ACATATCTTTCACCGAAGCT+TGG | - | Chr4:70828782-70828801 | None:intergenic | 40.0% | |
| ACCGTCTGGTTAAGATAAGA+CGG | - | Chr4:70826778-70826797 | None:intergenic | 40.0% | |
| ACCGTCTTATCTTAACCAGA+CGG | + | Chr4:70826774-70826793 | MsG0480022298.01.T01:intron | 40.0% | |
| AGAAAGGACTCATAACACCT+GGG | + | Chr4:70827229-70827248 | MsG0480022298.01.T01:CDS | 40.0% | |
| AGACCGCTATAACTTCATCA+AGG | - | Chr4:70828066-70828085 | None:intergenic | 40.0% | |
| CAATGTGACATGCCTATGTT+AGG | + | Chr4:70829286-70829305 | MsG0480022298.01.T01:three_prime_UTR | 40.0% | |
| CATATCTTTCACCGAAGCTT+GGG | - | Chr4:70828781-70828800 | None:intergenic | 40.0% | |
| CATTGTCATGCCTTACAACA+TGG | - | Chr4:70829271-70829290 | None:intergenic | 40.0% | |
| CCAATACCCTGAATTATGTG+TGG | - | Chr4:70828007-70828026 | None:intergenic | 40.0% | |
| CCAATGATATTACAGAGGTC+GGG | + | Chr4:70826319-70826338 | MsG0480022298.01.T01:intron | 40.0% | |
| CCACACATAATTCAGGGTAT+TGG | + | Chr4:70828004-70828023 | MsG0480022298.01.T01:CDS | 40.0% | |
| CTACGTATCAATCAGTGCAT+CGG | + | Chr4:70827841-70827860 | MsG0480022298.01.T01:intron | 40.0% | |
| CTCGAAAGCAACATACTTTC+AGG | + | Chr4:70827874-70827893 | MsG0480022298.01.T01:CDS | 40.0% | |
| CTTACCATTGGAAAACAGGT+GGG | + | Chr4:70828420-70828439 | MsG0480022298.01.T01:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | + | Chr4:70827877-70827896 | MsG0480022298.01.T01:CDS | 40.0% | |
| GAATATTCCAAGGCTATGAG+TGG | + | Chr4:70827532-70827551 | MsG0480022298.01.T01:CDS | 40.0% | |
| GAATTCTCCACAAGCAACAA+TGG | + | Chr4:70826158-70826177 | MsG0480022298.01.T01:exon | 40.0% | |
| GCCAATGATATTACAGAGGT+CGG | + | Chr4:70826318-70826337 | MsG0480022298.01.T01:intron | 40.0% | |
| GCCTTTATAGCAGCTACTAA+AGG | + | Chr4:70827421-70827440 | MsG0480022298.01.T01:CDS | 40.0% | |
| GCTAAGAGACCTGAAAATGA+GGG | + | Chr4:70828483-70828502 | MsG0480022298.01.T01:CDS | 40.0% | |
| GCTATAGCGTTATAGCATAG+CGG | + | Chr4:70826929-70826948 | MsG0480022298.01.T01:intron | 40.0% | |
| GCTATATAACCTATCCTGCA+AGG | - | Chr4:70827190-70827209 | None:intergenic | 40.0% | |
| GTTTCTGTTTGTTTGCAGTG+TGG | + | Chr4:70829146-70829165 | MsG0480022298.01.T01:three_prime_UTR | 40.0% | |
| TACGCTACAATGCTAAGCAA+TGG | - | Chr4:70827003-70827022 | None:intergenic | 40.0% | |
| TCTTACCATTGGAAAACAGG+TGG | + | Chr4:70828419-70828438 | MsG0480022298.01.T01:intron | 40.0% | |
| TGCTAAGAGACCTGAAAATG+AGG | + | Chr4:70828482-70828501 | MsG0480022298.01.T01:CDS | 40.0% | |
| TGTTATGAGTCCTTTCTGCT+CGG | - | Chr4:70827226-70827245 | None:intergenic | 40.0% | |
| TTCCTTGGATTTCCATCACT+TGG | + | Chr4:70828981-70829000 | MsG0480022298.01.T01:three_prime_UTR | 40.0% | |
| TTGCAATTGACAACACTGGT+TGG | + | Chr4:70827071-70827090 | MsG0480022298.01.T01:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | - | Chr4:70828427-70828446 | None:intergenic | 40.0% |
| ! | CTTTCGTATTTTACCTTCCC+AGG | - | Chr4:70827249-70827268 | None:intergenic | 40.0% |
| ! | CTTTTCTGATTGTCTGCATG+TGG | + | Chr4:70828150-70828169 | MsG0480022298.01.T01:intron | 40.0% |
| ! | TGGCAACTTTTGCAGATATC+CGG | + | Chr4:70828170-70828189 | MsG0480022298.01.T01:intron | 40.0% |
| ! | TGTGTCTACTTCTCTTTTCC+AGG | + | Chr4:70828799-70828818 | MsG0480022298.01.T01:CDS | 40.0% |
| !! | AGTTTTGACAGATTCTTCGC+CGG | - | Chr4:70828192-70828211 | None:intergenic | 40.0% |
| !! | CTATGAGTGTTAGCTTTCCT+TGG | + | Chr4:70828966-70828985 | MsG0480022298.01.T01:three_prime_UTR | 40.0% |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | - | Chr4:70827874-70827893 | None:intergenic | 40.0% |
| !! | GACATTTTAGTCTCGGCAAT+TGG | + | Chr4:70827694-70827713 | MsG0480022298.01.T01:CDS | 40.0% |
| !!! | TGGTTTTGTGCCCAAGAATT+TGG | + | Chr4:70828030-70828049 | MsG0480022298.01.T01:CDS | 40.0% |
| AAACAGGTGGGAATTTCCTC+AGG | + | Chr4:70828432-70828451 | MsG0480022298.01.T01:intron | 45.0% | |
| AGAATACTGGGCCAGAGATA+TGG | + | Chr4:70827650-70827669 | MsG0480022298.01.T01:CDS | 45.0% | |
| AGATCCTGGTTGAGCTGAAA+CGG | - | Chr4:70826242-70826261 | None:intergenic | 45.0% | |
| AGCCCTTAGTGATACTCTTC+AGG | - | Chr4:70826460-70826479 | None:intergenic | 45.0% | |
| AGGGGAAGATGAAAAGATCC+TGG | - | Chr4:70826256-70826275 | None:intergenic | 45.0% | |
| ATTCTTGATGCCGAGCAGAA+AGG | + | Chr4:70827213-70827232 | MsG0480022298.01.T01:CDS | 45.0% | |
| CACAGGACCACACATAATTC+AGG | + | Chr4:70827997-70828016 | MsG0480022298.01.T01:intron | 45.0% | |
| CAGAAAGGACTCATAACACC+TGG | + | Chr4:70827228-70827247 | MsG0480022298.01.T01:CDS | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+CGG | + | Chr4:70828767-70828786 | MsG0480022298.01.T01:intron | 45.0% | |
| CATGTTGCAGTGTCAAAGAC+AGG | + | Chr4:70826519-70826538 | MsG0480022298.01.T01:CDS | 45.0% | |
| CCCGACCTCTGTAATATCAT+TGG | - | Chr4:70826322-70826341 | None:intergenic | 45.0% | |
| CTGTCTTTGACACTGCAACA+TGG | - | Chr4:70826521-70826540 | None:intergenic | 45.0% | |
| GCACGAAATACACGAGATCA+TGG | - | Chr4:70826099-70826118 | None:intergenic | 45.0% | |
| GCTCATAGGAAAAACGCCAA+TGG | + | Chr4:70826430-70826449 | MsG0480022298.01.T01:intron | 45.0% | |
| GGCACTCTTGCTTTGTATTG+TGG | + | Chr4:70829002-70829021 | MsG0480022298.01.T01:three_prime_UTR | 45.0% | |
| GGCGACGACAATAACAAAAG+TGG | - | Chr4:70829032-70829051 | None:intergenic | 45.0% | |
| TATGCATGACTGCATGTCCT+CGG | - | Chr4:70826680-70826699 | None:intergenic | 45.0% | |
| TGCTGCTAAGCTTGAGCTTA+TGG | + | Chr4:70826493-70826512 | MsG0480022298.01.T01:CDS | 45.0% | |
| TGCTTACATGCACAGCTCAT+AGG | + | Chr4:70826416-70826435 | MsG0480022298.01.T01:intron | 45.0% | |
| TTAGTCTCGGCAATTGGAAC+CGG | + | Chr4:70827700-70827719 | MsG0480022298.01.T01:CDS | 45.0% | |
| TTGCAGTGTCAAAGACAGGT+AGG | + | Chr4:70826523-70826542 | MsG0480022298.01.T01:intron | 45.0% | |
| ! | GAAGAAGCCATTGTTGCTTG+TGG | - | Chr4:70826168-70826187 | None:intergenic | 45.0% |
| ! | TGAGATCATCGTTGCTGGTT+TGG | - | Chr4:70826293-70826312 | None:intergenic | 45.0% |
| ! | TGCCAAGTGATGGAAATCCA+AGG | - | Chr4:70828986-70829005 | None:intergenic | 45.0% |
| ! | TTTCTGCTTTGGTTCCTTGC+AGG | + | Chr4:70827173-70827192 | MsG0480022298.01.T01:intron | 45.0% |
| ! | TTTGGGATTCGACAAAGGCA+GGG | - | Chr4:70826275-70826294 | None:intergenic | 45.0% |
| ! | TTTTGGTAGAACCTACCGGT+GGG | + | Chr4:70827380-70827399 | MsG0480022298.01.T01:CDS | 45.0% |
| !! | AAAGCAAGAGTGCCAAGTGA+TGG | - | Chr4:70828996-70829015 | None:intergenic | 45.0% |
| !! | ATAATTCAGGGTATTGGGGC+TGG | + | Chr4:70828010-70828029 | MsG0480022298.01.T01:CDS | 45.0% |
| !! | ATTTTGGTAGAACCTACCGG+TGG | + | Chr4:70827379-70827398 | MsG0480022298.01.T01:CDS | 45.0% |
| !! | GAGATCATCGTTGCTGGTTT+GGG | - | Chr4:70826292-70826311 | None:intergenic | 45.0% |
| !!! | GGTGATATTTTTGGATCCCG+AGG | + | Chr4:70826660-70826679 | MsG0480022298.01.T01:CDS | 45.0% |
| !! | TATTATTAGTATAAAAATAT+GGG | - | Chr4:70826839-70826858 | None:intergenic | 5.0% |
| AACTGCTCCACTCATAGCCT+TGG | - | Chr4:70827542-70827561 | None:intergenic | 50.0% | |
| ACCAATTCCTGTGTTCCCAC+CGG | - | Chr4:70827398-70827417 | None:intergenic | 50.0% | |
| AGCTCCAGAAAGAGTTCCAC+CGG | - | Chr4:70827722-70827741 | None:intergenic | 50.0% | |
| AGGACTCATAACACCTGGGA+AGG | + | Chr4:70827233-70827252 | MsG0480022298.01.T01:CDS | 50.0% | |
| AGGCAAATAGCACTCCAGGA+AGG | + | Chr4:70828215-70828234 | MsG0480022298.01.T01:CDS | 50.0% | |
| ATGCATGACTGCATGTCCTC+GGG | - | Chr4:70826679-70826698 | None:intergenic | 50.0% | |
| CACATTCTTCTCGAGCTTCC+TGG | - | Chr4:70828820-70828839 | None:intergenic | 50.0% | |
| GTGTGGTCCTGTGATTTAGC+AGG | - | Chr4:70827990-70828009 | None:intergenic | 50.0% | |
| TGCAAGGCAAATAGCACTCC+AGG | + | Chr4:70828211-70828230 | MsG0480022298.01.T01:CDS | 50.0% | |
| TTGGGATTCGACAAAGGCAG+GGG | - | Chr4:70826274-70826293 | None:intergenic | 50.0% | |
| ! | GCTTTGGTTCCTTGCAGGAT+AGG | + | Chr4:70827178-70827197 | MsG0480022298.01.T01:intron | 50.0% |
| ! | GTTTGGGATTCGACAAAGGC+AGG | - | Chr4:70826276-70826295 | None:intergenic | 50.0% |
| !! | GCTGGTTTGGGATTCGACAA+AGG | - | Chr4:70826280-70826299 | None:intergenic | 50.0% |
| ACCGGTGGGAACACAGGAAT+TGG | + | Chr4:70827394-70827413 | MsG0480022298.01.T01:CDS | 55.0% | |
| AGCTGAAACGGTGGCTGGTA+CGG | - | Chr4:70826230-70826249 | None:intergenic | 55.0% | |
| AGCTGTAGCAGCACAACCTG+AGG | - | Chr4:70828451-70828470 | None:intergenic | 55.0% | |
| ATGCATGCAGTCCTGCCTTC+TGG | - | Chr4:70826810-70826829 | None:intergenic | 55.0% | |
| ATTCCTGTGTTCCCACCGGT+AGG | - | Chr4:70827394-70827413 | None:intergenic | 55.0% | |
| CACTAACCAGCAAGCCTTCC+TGG | - | Chr4:70828232-70828251 | None:intergenic | 55.0% | |
| GACGGTGAGATCTGTCCAGA+AGG | + | Chr4:70826792-70826811 | MsG0480022298.01.T01:intron | 55.0% | |
| GGAACCGGTGGAACTCTTTC+TGG | + | Chr4:70827715-70827734 | MsG0480022298.01.T01:CDS | 55.0% | |
| GTGAGATCTGTCCAGAAGGC+AGG | + | Chr4:70826796-70826815 | MsG0480022298.01.T01:intron | 55.0% | |
| TCCTGGTTGAGCTGAAACGG+TGG | - | Chr4:70826239-70826258 | None:intergenic | 55.0% | |
| TCTGGACAGATCTCACCGTC+TGG | - | Chr4:70826792-70826811 | None:intergenic | 55.0% | |
| TGCTGCTACAGCTGCATTGC+AGG | + | Chr4:70828458-70828477 | MsG0480022298.01.T01:CDS | 55.0% | |
| !! | GGTGGAACTCTTTCTGGAGC+TGG | + | Chr4:70827721-70827740 | MsG0480022298.01.T01:CDS | 55.0% |
| AGCACTCCAGGAAGGCTTGC+TGG | + | Chr4:70828223-70828242 | MsG0480022298.01.T01:CDS | 60.0% | |
| CCTAGGAGACAACCCACCCA+AGG | - | Chr4:70829083-70829102 | None:intergenic | 60.0% | |
| GAACCTACCGGTGGGAACAC+AGG | + | Chr4:70827388-70827407 | MsG0480022298.01.T01:CDS | 60.0% | |
| GCCACCGTTTCAGCTCAACC+AGG | + | Chr4:70826235-70826254 | MsG0480022298.01.T01:CDS | 60.0% | |
| GGTTGAGCTGAAACGGTGGC+TGG | - | Chr4:70826235-70826254 | None:intergenic | 60.0% | |
| GTCTCGGCAATTGGAACCGG+TGG | + | Chr4:70827703-70827722 | MsG0480022298.01.T01:CDS | 60.0% | |
| !! | CCTTGGGTGGGTTGTCTCCT+AGG | + | Chr4:70829080-70829099 | MsG0480022298.01.T01:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 70826081 | 70829347 | 70826081 | ID=MsG0480022298.01;Name=MsG0480022298.01 |
| Chr4 | mRNA | 70826081 | 70829347 | 70826081 | ID=MsG0480022298.01.T01;Parent=MsG0480022298.01;Name=MsG0480022298.01.T01;_AED=0.40;_eAED=0.43;_QI=96|0.77|0.9|1|1|1|10|485|394 |
| Chr4 | exon | 70828770 | 70829347 | 70828770 | ID=MsG0480022298.01.T01:exon:5561;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70828438 | 70828518 | 70828438 | ID=MsG0480022298.01.T01:exon:5560;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70828185 | 70828244 | 70828185 | ID=MsG0480022298.01.T01:exon:5559;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70828002 | 70828081 | 70828002 | ID=MsG0480022298.01.T01:exon:5558;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70827856 | 70827907 | 70827856 | ID=MsG0480022298.01.T01:exon:5557;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70827376 | 70827777 | 70827376 | ID=MsG0480022298.01.T01:exon:5556;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70827195 | 70827254 | 70827195 | ID=MsG0480022298.01.T01:exon:5555;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70826648 | 70826735 | 70826648 | ID=MsG0480022298.01.T01:exon:5554;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70826431 | 70826540 | 70826431 | ID=MsG0480022298.01.T01:exon:5553;Parent=MsG0480022298.01.T01 |
| Chr4 | exon | 70826081 | 70826335 | 70826081 | ID=MsG0480022298.01.T01:exon:5552;Parent=MsG0480022298.01.T01 |
| Chr4 | five_prime_UTR | 70826081 | 70826176 | 70826081 | ID=MsG0480022298.01.T01:five_prime_utr;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70826177 | 70826335 | 70826177 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70826431 | 70826540 | 70826431 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70826648 | 70826735 | 70826648 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70827195 | 70827254 | 70827195 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70827376 | 70827777 | 70827376 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70827856 | 70827907 | 70827856 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70828002 | 70828081 | 70828002 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70828185 | 70828244 | 70828185 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70828438 | 70828518 | 70828438 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | CDS | 70828770 | 70828862 | 70828770 | ID=MsG0480022298.01.T01:cds;Parent=MsG0480022298.01.T01 |
| Chr4 | three_prime_UTR | 70828863 | 70829347 | 70828863 | ID=MsG0480022298.01.T01:three_prime_utr;Parent=MsG0480022298.01.T01 |
| Gene Sequence |
| Protein sequence |
