Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014993.01.T01 | XP_013460457.1 | 96.825 | 126 | 4 | 0 | 60 | 185 | 244 | 369 | 5.51E-80 | 252 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014993.01.T01 | Q9SPV4 | 51.163 | 129 | 57 | 2 | 56 | 184 | 235 | 357 | 3.55E-41 | 145 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048909.01 | MsG0380014993.01 | 0.838698 | 2.463900e-57 | 3.326515e-54 |
MsG0180001873.01 | MsG0380014993.01 | 0.806208 | 9.196694e-50 | 4.962796e-47 |
MsG0180005811.01 | MsG0380014993.01 | 0.808492 | 3.015479e-50 | 1.726652e-47 |
MsG0380014993.01 | MsG0480023371.01 | 0.812232 | 4.703258e-51 | 2.973931e-48 |
MsG0380014993.01 | MsG0680032339.01 | 0.826750 | 2.285409e-54 | 2.162441e-51 |
MsG0380014993.01 | MsG0780038115.01 | 0.810471 | 1.134039e-50 | 6.841868e-48 |
MsG0380014993.01 | MsG0880042921.01 | 0.817153 | 3.823181e-52 | 2.762591e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014993.01.T01 | MTR_3g467270 | 96.825 | 126 | 4 | 0 | 60 | 185 | 244 | 369 | 6.67e-84 | 252 |
MsG0380014993.01.T01 | MTR_4g018820 | 72.000 | 125 | 24 | 1 | 60 | 184 | 245 | 358 | 5.17e-58 | 186 |
MsG0380014993.01.T01 | MTR_8g077040 | 69.048 | 126 | 39 | 0 | 60 | 185 | 245 | 370 | 6.62e-58 | 186 |
MsG0380014993.01.T01 | MTR_8g076900 | 70.400 | 125 | 29 | 2 | 60 | 184 | 245 | 361 | 2.82e-55 | 179 |
MsG0380014993.01.T01 | MTR_5g020940 | 66.400 | 125 | 42 | 0 | 60 | 184 | 256 | 380 | 3.30e-54 | 176 |
MsG0380014993.01.T01 | MTR_6g056070 | 57.692 | 130 | 41 | 2 | 56 | 185 | 242 | 357 | 5.02e-42 | 144 |
MsG0380014993.01.T01 | MTR_8g020690 | 54.400 | 125 | 46 | 1 | 60 | 184 | 246 | 359 | 2.87e-40 | 140 |
MsG0380014993.01.T01 | MTR_8g020700 | 51.200 | 125 | 47 | 2 | 60 | 184 | 246 | 356 | 4.16e-34 | 124 |
MsG0380014993.01.T01 | MTR_8g077030 | 43.478 | 161 | 56 | 7 | 37 | 173 | 120 | 269 | 1.03e-23 | 97.4 |
MsG0380014993.01.T01 | MTR_1g022465 | 38.400 | 125 | 69 | 1 | 60 | 184 | 261 | 377 | 1.10e-23 | 96.3 |
MsG0380014993.01.T01 | MTR_1g022455 | 36.800 | 125 | 72 | 1 | 60 | 184 | 261 | 378 | 1.13e-22 | 93.6 |
MsG0380014993.01.T01 | MTR_6g015620 | 33.071 | 127 | 80 | 3 | 59 | 184 | 15 | 137 | 2.31e-18 | 77.4 |
MsG0380014993.01.T01 | MTR_3g467560 | 33.594 | 128 | 78 | 2 | 56 | 183 | 267 | 387 | 6.25e-18 | 80.5 |
MsG0380014993.01.T01 | MTR_7g084620 | 31.061 | 132 | 83 | 2 | 56 | 185 | 240 | 365 | 6.45e-18 | 80.5 |
MsG0380014993.01.T01 | MTR_7g084330 | 31.538 | 130 | 85 | 1 | 56 | 185 | 208 | 333 | 2.29e-17 | 78.6 |
MsG0380014993.01.T01 | MTR_3g117060 | 33.065 | 124 | 78 | 3 | 62 | 184 | 249 | 368 | 8.58e-17 | 77.4 |
MsG0380014993.01.T01 | MTR_7g084350 | 29.545 | 132 | 85 | 2 | 56 | 185 | 240 | 365 | 5.21e-15 | 72.0 |
MsG0380014993.01.T01 | MTR_7g084340 | 27.692 | 130 | 84 | 2 | 57 | 183 | 7 | 129 | 6.58e-15 | 68.2 |
MsG0380014993.01.T01 | MTR_5g046110 | 28.070 | 114 | 66 | 2 | 58 | 170 | 309 | 407 | 1.23e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014993.01.T01 | AT3G11480 | 31.053 | 190 | 111 | 3 | 4 | 184 | 201 | 379 | 2.42e-19 | 84.3 |
MsG0380014993.01.T01 | AT1G19640 | 36.800 | 125 | 78 | 1 | 60 | 183 | 263 | 387 | 3.54e-19 | 84.0 |
MsG0380014993.01.T01 | AT5G04370 | 33.158 | 190 | 109 | 7 | 4 | 184 | 210 | 390 | 4.21e-17 | 78.2 |
MsG0380014993.01.T01 | AT5G04370 | 33.158 | 190 | 109 | 7 | 4 | 184 | 215 | 395 | 4.92e-17 | 78.2 |
MsG0380014993.01.T01 | AT5G04370 | 33.158 | 190 | 109 | 7 | 4 | 184 | 229 | 409 | 5.64e-17 | 78.2 |
MsG0380014993.01.T01 | AT4G36470 | 34.194 | 155 | 85 | 5 | 36 | 184 | 227 | 370 | 4.61e-16 | 75.1 |
MsG0380014993.01.T01 | AT5G04380 | 29.630 | 189 | 116 | 5 | 6 | 184 | 137 | 318 | 4.11e-15 | 72.4 |
MsG0380014993.01.T01 | AT5G04380 | 29.630 | 189 | 116 | 5 | 6 | 184 | 208 | 389 | 6.43e-15 | 72.0 |
MsG0380014993.01.T01 | AT5G66430 | 32.000 | 125 | 81 | 1 | 60 | 184 | 234 | 354 | 3.94e-14 | 69.7 |
MsG0380014993.01.T01 | AT2G14060 | 32.331 | 133 | 76 | 4 | 59 | 184 | 247 | 372 | 4.09e-14 | 69.7 |
MsG0380014993.01.T01 | AT5G38020 | 32.867 | 143 | 74 | 6 | 55 | 184 | 196 | 329 | 4.83e-14 | 69.3 |
MsG0380014993.01.T01 | AT5G38020 | 32.867 | 143 | 74 | 6 | 55 | 184 | 235 | 368 | 5.15e-14 | 69.3 |
MsG0380014993.01.T01 | AT3G21950 | 33.566 | 143 | 73 | 3 | 55 | 184 | 235 | 368 | 2.68e-13 | 67.4 |
MsG0380014993.01.T01 | AT5G04380 | 33.613 | 119 | 71 | 3 | 67 | 184 | 267 | 378 | 1.59e-12 | 65.1 |
MsG0380014993.01.T01 | AT3G21950 | 33.333 | 138 | 70 | 3 | 60 | 184 | 272 | 400 | 2.96e-12 | 64.3 |
MsG0380014993.01.T01 | AT1G68040 | 34.951 | 103 | 55 | 2 | 56 | 158 | 244 | 334 | 9.59e-12 | 62.8 |
Find 38 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGGTTCCTGGTTCATTTA+TGG | 0.186917 | 3:-63697584 | MsG0380014993.01.T01:CDS |
ATCATTTGTCATCAATAAAT+TGG | 0.187526 | 3:-63696938 | MsG0380014993.01.T01:CDS |
TGGAGGTTTCTGAAGTTAAT+TGG | 0.202013 | 3:-63696918 | MsG0380014993.01.T01:CDS |
AAAGGCCCGTGTTACATCTA+TGG | 0.297642 | 3:-63697604 | MsG0380014993.01.T01:CDS |
TGTTACATCTATGGGGTTCC+TGG | 0.309701 | 3:-63697595 | MsG0380014993.01.T01:CDS |
ATCACATAGTTTCTCTTTGA+AGG | 0.315688 | 3:+63697641 | None:intergenic |
ACAATATGGCACAATGCATT+AGG | 0.317665 | 3:-63696825 | MsG0380014993.01.T01:CDS |
GATGGAGATGGATAATAGTT+AGG | 0.322863 | 3:+63696991 | None:intergenic |
GGTGAACTTAGTCTTCTCTT+TGG | 0.329569 | 3:+63696708 | None:intergenic |
CAGTCTTCAATGGCTATCTA+AGG | 0.342755 | 3:-63697516 | MsG0380014993.01.T01:intron |
ACAAAATGCAAACTATTATC+TGG | 0.350999 | 3:+63697551 | None:intergenic |
CTTTGGTGAAGGTGTCATTA+AGG | 0.358741 | 3:-63696773 | MsG0380014993.01.T01:CDS |
AGAGAAACTATGTGATGAAA+TGG | 0.370752 | 3:-63697634 | MsG0380014993.01.T01:CDS |
TAGAGATGATGGATACAATA+TGG | 0.413499 | 3:-63696839 | MsG0380014993.01.T01:CDS |
TGTCAACGATATGCTAAGAT+TGG | 0.419291 | 3:+63696687 | None:intergenic |
CAATATGGCACAATGCATTA+GGG | 0.420742 | 3:-63696824 | MsG0380014993.01.T01:CDS |
AAGGCCCGTGTTACATCTAT+GGG | 0.450002 | 3:-63697603 | MsG0380014993.01.T01:CDS |
TCAGAATCACTTAGAGATGA+TGG | 0.456810 | 3:-63696850 | MsG0380014993.01.T01:CDS |
ATCTCCATCTGAAGTGAAGT+TGG | 0.456867 | 3:-63696977 | MsG0380014993.01.T01:CDS |
CTAGTTAGTCACTTTGGTGA+AGG | 0.467251 | 3:-63696784 | MsG0380014993.01.T01:CDS |
CCTTTGCTAGTTAGTCACTT+TGG | 0.468922 | 3:-63696790 | MsG0380014993.01.T01:CDS |
ACTTCCAACTTCACTTCAGA+TGG | 0.478421 | 3:+63696973 | None:intergenic |
ATTCCTCGTACAGTCTTCAA+TGG | 0.498924 | 3:-63697526 | MsG0380014993.01.T01:CDS |
ATGGAGATGGATAATAGTTA+GGG | 0.500415 | 3:+63696992 | None:intergenic |
ATTTGTCATCAATAAATTGG+AGG | 0.518651 | 3:-63696935 | MsG0380014993.01.T01:CDS |
TGATGAAATGGAAACTGAAA+AGG | 0.522452 | 3:-63697622 | MsG0380014993.01.T01:CDS |
TTTCTCTTTGAAGGTGTCAA+GGG | 0.532238 | 3:+63697650 | None:intergenic |
GTTTCTCTTTGAAGGTGTCA+AGG | 0.541705 | 3:+63697649 | None:intergenic |
AACTTCACTTCAGATGGAGA+TGG | 0.545461 | 3:+63696979 | None:intergenic |
CATTTCAGATTCAAAGTCAA+AGG | 0.547130 | 3:+63696873 | None:intergenic |
AAGTTGGAAGTTCTCAAAGA+AGG | 0.569653 | 3:-63696961 | MsG0380014993.01.T01:CDS |
GGCACAATGCATTAGGGCTG+TGG | 0.579915 | 3:-63696818 | MsG0380014993.01.T01:CDS |
CCAAAGTGACTAACTAGCAA+AGG | 0.593693 | 3:+63696790 | None:intergenic |
AATTCTGCCATAAATGAACC+AGG | 0.628715 | 3:+63697577 | None:intergenic |
GGAACCCCATAGATGTAACA+CGG | 0.651299 | 3:+63697598 | None:intergenic |
GAACCCCATAGATGTAACAC+GGG | 0.684498 | 3:+63697599 | None:intergenic |
TAGCCATTGAAGACTGTACG+AGG | 0.694298 | 3:+63697523 | None:intergenic |
AGGCCCGTGTTACATCTATG+GGG | 0.756005 | 3:-63697602 | MsG0380014993.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAGAAAAATTTTAACTGAT+CGG | - | Chr3:63697614-63697633 | MsG0380014993.01.T01:CDS | 15.0% |
!! | ATCATTTGTCATCAATAAAT+TGG | - | Chr3:63697411-63697430 | MsG0380014993.01.T01:intron | 20.0% |
!!! | CAGTTAAAATTTTTCTATAG+CGG | + | Chr3:63697612-63697631 | None:intergenic | 20.0% |
!!! | TAGATATGAATATTTTGTGT+TGG | - | Chr3:63696902-63696921 | MsG0380014993.01.T01:CDS | 20.0% |
! | ACAAAATGCAAACTATTATC+TGG | + | Chr3:63696801-63696820 | None:intergenic | 25.0% |
! | ATTTGTCATCAATAAATTGG+AGG | - | Chr3:63697414-63697433 | MsG0380014993.01.T01:intron | 25.0% |
! | TTTAATCTACTCATGAAGAA+TGG | - | Chr3:63696878-63696897 | MsG0380014993.01.T01:CDS | 25.0% |
!! | CAAATGATTCTAACACTTTT+AGG | - | Chr3:63697087-63697106 | MsG0380014993.01.T01:intron | 25.0% |
!! | TATGAATATTTTGTGTTGGA+TGG | - | Chr3:63696906-63696925 | MsG0380014993.01.T01:CDS | 25.0% |
!!! | CAGATTTCTCTTTTTTTCTT+CGG | - | Chr3:63697034-63697053 | MsG0380014993.01.T01:intron | 25.0% |
AATTATTCAATGTATGCTGC+AGG | - | Chr3:63697297-63697316 | MsG0380014993.01.T01:intron | 30.0% | |
AGAGAAACTATGTGATGAAA+TGG | - | Chr3:63696715-63696734 | MsG0380014993.01.T01:CDS | 30.0% | |
ATCACATAGTTTCTCTTTGA+AGG | + | Chr3:63696711-63696730 | None:intergenic | 30.0% | |
ATGGAGATGGATAATAGTTA+GGG | + | Chr3:63697360-63697379 | None:intergenic | 30.0% | |
ATTATTCAATGTATGCTGCA+GGG | - | Chr3:63697298-63697317 | MsG0380014993.01.T01:intron | 30.0% | |
CATTTCAGATTCAAAGTCAA+AGG | + | Chr3:63697479-63697498 | None:intergenic | 30.0% | |
TGATGAAATGGAAACTGAAA+AGG | - | Chr3:63696727-63696746 | MsG0380014993.01.T01:CDS | 30.0% | |
!! | TAGAGATGATGGATACAATA+TGG | - | Chr3:63697510-63697529 | MsG0380014993.01.T01:intron | 30.0% |
AAGTTGGAAGTTCTCAAAGA+AGG | - | Chr3:63697388-63697407 | MsG0380014993.01.T01:intron | 35.0% | |
AATTCTGCCATAAATGAACC+AGG | + | Chr3:63696775-63696794 | None:intergenic | 35.0% | |
ACAATATGGCACAATGCATT+AGG | - | Chr3:63697524-63697543 | MsG0380014993.01.T01:CDS | 35.0% | |
AGCACCTTCAACTAATTCTT+TGG | + | Chr3:63697067-63697086 | None:intergenic | 35.0% | |
CAATATGGCACAATGCATTA+GGG | - | Chr3:63697525-63697544 | MsG0380014993.01.T01:CDS | 35.0% | |
CTATGATATGATAGCTCAGT+TGG | - | Chr3:63697183-63697202 | MsG0380014993.01.T01:intron | 35.0% | |
GATGGAGATGGATAATAGTT+AGG | + | Chr3:63697361-63697380 | None:intergenic | 35.0% | |
TCAGAATCACTTAGAGATGA+TGG | - | Chr3:63697499-63697518 | MsG0380014993.01.T01:intron | 35.0% | |
TGTCAACGATATGCTAAGAT+TGG | + | Chr3:63697665-63697684 | None:intergenic | 35.0% | |
TTGTTACATTTGGGAACTCA+TGG | - | Chr3:63697143-63697162 | MsG0380014993.01.T01:intron | 35.0% | |
! | TAAGCCTTGATGACATTTGA+GGG | + | Chr3:63696997-63697016 | None:intergenic | 35.0% |
!! | CAAGGAGTGTTGTTACATTT+GGG | - | Chr3:63697134-63697153 | MsG0380014993.01.T01:intron | 35.0% |
!! | TGGAGGTTTCTGAAGTTAAT+TGG | - | Chr3:63697431-63697450 | MsG0380014993.01.T01:intron | 35.0% |
!! | TTTCTCTTTGAAGGTGTCAA+GGG | + | Chr3:63696702-63696721 | None:intergenic | 35.0% |
AACTTCACTTCAGATGGAGA+TGG | + | Chr3:63697373-63697392 | None:intergenic | 40.0% | |
ACTTCCAACTTCACTTCAGA+TGG | + | Chr3:63697379-63697398 | None:intergenic | 40.0% | |
ATTCCTCGTACAGTCTTCAA+TGG | - | Chr3:63696823-63696842 | MsG0380014993.01.T01:CDS | 40.0% | |
CAGTCTTCAATGGCTATCTA+AGG | - | Chr3:63696833-63696852 | MsG0380014993.01.T01:CDS | 40.0% | |
CCAAAGTGACTAACTAGCAA+AGG | + | Chr3:63697562-63697581 | None:intergenic | 40.0% | |
CCTTTGCTAGTTAGTCACTT+TGG | - | Chr3:63697559-63697578 | MsG0380014993.01.T01:CDS | 40.0% | |
CGTGCCAAAGAATTAGTTGA+AGG | - | Chr3:63697060-63697079 | MsG0380014993.01.T01:intron | 40.0% | |
GTGATTCATTAGGTTCCAGA+GGG | - | Chr3:63696928-63696947 | MsG0380014993.01.T01:CDS | 40.0% | |
GTGTTGGATGGTGATTCATT+AGG | - | Chr3:63696918-63696937 | MsG0380014993.01.T01:CDS | 40.0% | |
TAACAACACTCCTTGCTTGA+TGG | + | Chr3:63697129-63697148 | None:intergenic | 40.0% | |
! | AAGCCTTGATGACATTTGAG+GGG | + | Chr3:63696996-63697015 | None:intergenic | 40.0% |
! | ATCTCCATCTGAAGTGAAGT+TGG | - | Chr3:63697372-63697391 | MsG0380014993.01.T01:intron | 40.0% |
! | CTAGTTAGTCACTTTGGTGA+AGG | - | Chr3:63697565-63697584 | MsG0380014993.01.T01:CDS | 40.0% |
! | GGTGAACTTAGTCTTCTCTT+TGG | + | Chr3:63697644-63697663 | None:intergenic | 40.0% |
! | GTAAGCCTTGATGACATTTG+AGG | + | Chr3:63696998-63697017 | None:intergenic | 40.0% |
!! | CTTTGGTGAAGGTGTCATTA+AGG | - | Chr3:63697576-63697595 | MsG0380014993.01.T01:CDS | 40.0% |
!! | GCAAGGAGTGTTGTTACATT+TGG | - | Chr3:63697133-63697152 | MsG0380014993.01.T01:intron | 40.0% |
!! | GTTTCTCTTTGAAGGTGTCA+AGG | + | Chr3:63696703-63696722 | None:intergenic | 40.0% |
AAAGGCCCGTGTTACATCTA+TGG | - | Chr3:63696745-63696764 | MsG0380014993.01.T01:CDS | 45.0% | |
AAGCCCCTCAAATGTCATCA+AGG | - | Chr3:63696990-63697009 | MsG0380014993.01.T01:CDS | 45.0% | |
AAGGCCCGTGTTACATCTAT+GGG | - | Chr3:63696746-63696765 | MsG0380014993.01.T01:CDS | 45.0% | |
ATGCGACAATCCATCAAGCA+AGG | - | Chr3:63697116-63697135 | MsG0380014993.01.T01:intron | 45.0% | |
CATTTGGGAACTCATGGCTA+TGG | - | Chr3:63697149-63697168 | MsG0380014993.01.T01:intron | 45.0% | |
GAACCCCATAGATGTAACAC+GGG | + | Chr3:63696753-63696772 | None:intergenic | 45.0% | |
GGAACCCCATAGATGTAACA+CGG | + | Chr3:63696754-63696773 | None:intergenic | 45.0% | |
GGTGATTCATTAGGTTCCAG+AGG | - | Chr3:63696927-63696946 | MsG0380014993.01.T01:CDS | 45.0% | |
TAGCCATTGAAGACTGTACG+AGG | + | Chr3:63696829-63696848 | None:intergenic | 45.0% | |
TGGGGTTCCTGGTTCATTTA+TGG | - | Chr3:63696765-63696784 | MsG0380014993.01.T01:CDS | 45.0% | |
TGTTACATCTATGGGGTTCC+TGG | - | Chr3:63696754-63696773 | MsG0380014993.01.T01:CDS | 45.0% | |
AGGCCCGTGTTACATCTATG+GGG | - | Chr3:63696747-63696766 | MsG0380014993.01.T01:CDS | 50.0% | |
TTGAGGGGCTTGTGCTTGTA+AGG | + | Chr3:63696981-63697000 | None:intergenic | 50.0% | |
! | TTGTTGTTGTCAGCACCCTC+TGG | + | Chr3:63696946-63696965 | None:intergenic | 50.0% |
!! | GAGGGTGCTGACAACAACAA+AGG | - | Chr3:63696946-63696965 | MsG0380014993.01.T01:CDS | 50.0% |
GGCACAATGCATTAGGGCTG+TGG | - | Chr3:63697531-63697550 | MsG0380014993.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 63696675 | 63697696 | 63696675 | ID=MsG0380014993.01;Name=MsG0380014993.01 |
Chr3 | mRNA | 63696675 | 63697696 | 63696675 | ID=MsG0380014993.01.T01;Parent=MsG0380014993.01;Name=MsG0380014993.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|185 |
Chr3 | exon | 63697517 | 63697696 | 63697517 | ID=MsG0380014993.01.T01:exon:6748;Parent=MsG0380014993.01.T01 |
Chr3 | exon | 63696675 | 63697052 | 63696675 | ID=MsG0380014993.01.T01:exon:6747;Parent=MsG0380014993.01.T01 |
Chr3 | CDS | 63697517 | 63697696 | 63697517 | ID=MsG0380014993.01.T01:cds;Parent=MsG0380014993.01.T01 |
Chr3 | CDS | 63696675 | 63697052 | 63696675 | ID=MsG0380014993.01.T01:cds;Parent=MsG0380014993.01.T01 |
Gene Sequence |
Protein sequence |