AlfalfaGEDB | MsG0380015081.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015081.01

KEGG: K02879
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF01196 PF10674

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015081.01.T01	XP_013460500.1	93.458	214	10	2	1	210	1	214	2.66E-131	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015081.01.T01	O80363	76.961	204	40	4	14	210	2	205	9.39E-101	299

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015081.01.T01	A0A103XP69	61.538	377	107	6	14	354	2	376	9.76e-144	421

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0380015081.01	0.846724	1.815065e-59	3.153269e-56
MsG0080047945.01	MsG0380015081.01	0.835665	1.470552e-56	1.810460e-53
MsG0080047955.01	MsG0380015081.01	0.846986	1.538935e-59	2.695794e-56
MsG0080047956.01	MsG0380015081.01	0.855641	5.505163e-62	1.279582e-58
MsG0080048036.01	MsG0380015081.01	-0.822180	2.718829e-53	2.258849e-50
MsG0080048059.01	MsG0380015081.01	0.888402	6.095148e-73	4.715069e-69
MsG0080048232.01	MsG0380015081.01	0.802705	4.942550e-49	2.437661e-46
MsG0080048528.01	MsG0380015081.01	0.849618	2.880821e-60	5.493472e-57
MsG0080048611.01	MsG0380015081.01	0.831597	1.525549e-55	1.663413e-52
MsG0080048676.01	MsG0380015081.01	0.814545	1.458927e-51	9.817685e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015081.01.T01	MTR_3g062930	93.458	214	10	2	1	210	1	214	3.22e-135	384
MsG0380015081.01.T01	MTR_3g062920	98.582	141	2	0	222	362	76	216	2.77e-101	298
MsG0380015081.01.T01	MTR_3g095900	44.144	111	62	0	100	210	3	113	2.57e-27	105
MsG0380015081.01.T01	MTR_8g103900	44.144	111	62	0	100	210	3	113	5.95e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015081.01.T01	AT3G54210	69.767	215	56	4	1	210	1	211	3.74e-94	280
MsG0380015081.01.T01	AT5G58250	76.923	143	33	0	217	359	66	208	9.66e-76	233
MsG0380015081.01.T01	AT5G09770	45.946	111	60	0	100	210	3	113	4.75e-28	107
MsG0380015081.01.T01	AT5G64650	45.045	111	61	0	100	210	3	113	1.91e-27	106

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Find 116 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTATGCTGGATGAGG+AGG	0.565968	3:-64966660	MsG0380015081.01.T01:CDS
AAATTCCAGCTTAGTAGGAT+TGG	0.428131	3:+64965477	None:intergenic
AACATACTTCCTAATTGCAC+TGG	0.550604	3:+64969417	None:intergenic
AACTGAGAATTGAGACACTC+TGG	0.557561	3:-64970806	MsG0380015081.01.T01:five_prime_UTR
AAGATGGTTCTCTACATAAA+AGG	0.312212	3:-64969372	MsG0380015081.01.T01:CDS
AAGGCAGTATAATTATTTAA+AGG	0.283466	3:-64965231	MsG0380015081.01.T01:three_prime_UTR
AATGAAGAAACGGAAGTAGG+AGG	0.630685	3:+64970659	None:intergenic
AATGAAGGTATACCTGATGG+AGG	0.679743	3:+64970533	None:intergenic
AATGGCGAACGTGGCTGTTA+TGG	0.345758	3:-64970756	MsG0380015081.01.T01:CDS
AATTGCACTGGCTCTTGCCC+TGG	0.404316	3:+64969429	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGGTTCTCTACATAAA+AGG	-	Chr3:64966583-64966602	MsG0380015081.01.T01:CDS	30.0%
AATATAAGGTCATGAAAGAG+AGG	-	Chr3:64967234-64967253	MsG0380015081.01.T01:intron	30.0%
AGTTTCACCATTATTGACAA+TGG	-	Chr3:64966378-64966397	MsG0380015081.01.T01:intron	30.0%
ATAACTGGATTGAATTTCAG+TGG	+	Chr3:64966046-64966065	None:intergenic	30.0%
ATCCTAAATATGAATCTGGA+TGG	-	Chr3:64970529-64970548	MsG0380015081.01.T01:intron	30.0%
ATGATACCATGTTATAAACC+AGG	+	Chr3:64965969-64965988	None:intergenic	30.0%
ATGCAAAATAGAACACAATG+AGG	+	Chr3:64967287-64967306	None:intergenic	30.0%
ATGCAATGGAAATGAAATGA+AGG	+	Chr3:64965440-64965459	None:intergenic	30.0%
CAATTAACTGTTGTTCTTGA+TGG	-	Chr3:64969149-64969168	MsG0380015081.01.T01:intron	30.0%
CAGATTCATGAAATTAAGAC+TGG	-	Chr3:64970401-64970420	MsG0380015081.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	64965140	64970837	64965140	ID=MsG0380015081.01;Name=MsG0380015081.01
Chr3	mRNA	64965140	64970837	64965140	ID=MsG0380015081.01.T01;Parent=MsG0380015081.01;Name=MsG0380015081.01.T01;_AED=0.47;_eAED=0.48;_QI=60\|0.5\|0.6\|1\|1\|1\|5\|241\|362
Chr3	exon	64965140	64965573	64965140	ID=MsG0380015081.01.T01:exon:9879;Parent=MsG0380015081.01.T01
Chr3	exon	64966488	64966720	64966488	ID=MsG0380015081.01.T01:exon:9878;Parent=MsG0380015081.01.T01
Chr3	exon	64968627	64968660	64968627	ID=MsG0380015081.01.T01:exon:9877;Parent=MsG0380015081.01.T01
Chr3	exon	64969214	64969610	64969214	ID=MsG0380015081.01.T01:exon:9876;Parent=MsG0380015081.01.T01
Chr3	exon	64970546	64970837	64970546	ID=MsG0380015081.01.T01:exon:9875;Parent=MsG0380015081.01.T01
Chr3	five_prime_UTR	64970778	64970837	64970778	ID=MsG0380015081.01.T01:five_prime_utr;Parent=MsG0380015081.01.T01
Chr3	CDS	64970546	64970777	64970546	ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3	CDS	64969214	64969610	64969214	ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3	CDS	64968627	64968660	64968627	ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3	CDS	64966488	64966720	64966488	ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3	CDS	64965381	64965573	64965381	ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3	three_prime_UTR	64965140	64965380	64965140	ID=MsG0380015081.01.T01:three_prime_utr;Parent=MsG0380015081.01.T01

Gene Sequence

>MsG0380015081.01.T01

ATGGCGAACGTGGCTGTTATGGCTACCACCACCAATAACTCCACCACCACTAGCAGATGGAATATGTCTTCTCTTCGCTCTGCCTTACCTTCAATTCCTCCTACTTCCGTTTCTTCATTGCGCTTCACTCGTTCTTCTCCAACCACACTCCGAATTTCCAGACCCAAATCCAAATCCCTACTTCCCTCTTTCACCGGACTTCGTCCTCTCCCAATCTTCGCTCCTCCATCAGAATTTGATCACAGTTTCACCATTATTGACAATGGTGGTCGAGTCTATGCTATGAGACATGGAAGGAAAGTGCCGAAACTCAACAGGCCTCCTGATCAGCGTAAGGCACTCATTCGAGGCCTAACAACACAGCTCCTTAAATATGGCCGCATCAAGACAACCAGGGCAAGAGCCAGTGCAATTAGGAAGTATGTTGATAAAATGATCACTCTTGCAAAAGATGGTTCTCTACATAAAAGGAGACAAGCTCTTGGCTTCATCTATGAGAAGCAGATTGTTCATGCTTTATTTGCAGAGGTTCCAGAACGTTATGGCGAAAGAAATGGTGGTTATACAAGAATTATAAGAACCCTACCAAGGCGGGGTGATAATGCACCTATGGCATACATTGAACTTGTAGGATTGAGATTTTCATCTTCAAGGGTGAAACTGAGTGAGTTCACCAAGTATTATTTTATTGTTGCAAATGCAAAATTTATGCTGGATGAGGAGGAGCATTTCCAAGAACAACTATTTGAACGTCGTCGCTACTATGGAGAGCGTAATAAAGAACAGGATTACTGGCTTGTCATTGAGCCTAAATTCTTGGATAGTTTTCCTGACTTTACCAAGAAACTGCGGAGACCTGCTGTTGCTCTAGTGTCAACCAACGGTCCATGGATCACATTCATGAAATTAAGACTGGATCGAGTTTTATCAGGAAGTTTTGAAGCTGACAGCTTAGAAGAAGCATTAGCCTCCAATCCTACTAAGCTGGAATTTGAGAAGCCTGCAAAATGGGTGGCACCCTATCCTAAATATGAATCTGGATGGTGGGAAACTTTCTTGCCCTCTGGACAGAAAGAGGTGAACTCTTAA

Protein sequence

>MsG0380015081.01.T01

MANVAVMATTTNNSTTTSRWNMSSLRSALPSIPPTSVSSLRFTRSSPTTLRISRPKSKSLLPSFTGLRPLPIFAPPSEFDHSFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELVGLRFSSSRVKLSEFTKYYFIVANAKFMLDEEEHFQEQLFERRRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPWITFMKLRLDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQKEVNS*