AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015081.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015081.01.T01 MTR_3g062930 93.458 214 10 2 1 210 1 214 3.22e-135 384
MsG0380015081.01.T01 MTR_3g062920 98.582 141 2 0 222 362 76 216 2.77e-101 298
MsG0380015081.01.T01 MTR_3g095900 44.144 111 62 0 100 210 3 113 2.57e-27 105
MsG0380015081.01.T01 MTR_8g103900 44.144 111 62 0 100 210 3 113 5.95e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015081.01.T01 AT3G54210 69.767 215 56 4 1 210 1 211 3.74e-94 280
MsG0380015081.01.T01 AT5G58250 76.923 143 33 0 217 359 66 208 9.66e-76 233
MsG0380015081.01.T01 AT5G09770 45.946 111 60 0 100 210 3 113 4.75e-28 107
MsG0380015081.01.T01 AT5G64650 45.045 111 61 0 100 210 3 113 1.91e-27 106

Find 116 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATCCAGATTCATATTT+AGG 0.173330 3:+64965424 None:intergenic
TCTTGATGCGGCCATATTTA+AGG 0.180492 3:+64969455 None:intergenic
GGAAGTAGGGATTTGGATTT+GGG 0.255031 3:+64970593 None:intergenic
GGGAAGTAGGGATTTGGATT+TGG 0.260301 3:+64970592 None:intergenic
GACGTTCAAATAGTTGTTCT+TGG 0.266567 3:+64966630 None:intergenic
AAGGCAGTATAATTATTTAA+AGG 0.283466 3:-64965231 MsG0380015081.01.T01:three_prime_UTR
TGTCATTGAGCCTAAATTCT+TGG 0.289570 3:-64966564 MsG0380015081.01.T01:CDS
TCCCATTCTGTTTCGGTAAC+CGG 0.301414 3:-64965348 MsG0380015081.01.T01:three_prime_UTR
GCTAGTGGTGGTGGAGTTAT+TGG 0.301505 3:+64970724 None:intergenic
AAGATGGTTCTCTACATAAA+AGG 0.312212 3:-64969372 MsG0380015081.01.T01:CDS
GGAAAACTATCCAAGAATTT+AGG 0.316224 3:+64966554 None:intergenic
AGCAGGTCTCCGCAGTTTCT+TGG 0.317045 3:+64966523 None:intergenic
TTTGAACGTCGTCGCTACTA+TGG 0.318798 3:-64966617 MsG0380015081.01.T01:CDS
TTCATCTTCAAGGGTGAAAC+TGG 0.333089 3:-64968626 MsG0380015081.01.T01:intron
AGAAATAGATCTACAAATTC+CGG 0.337387 3:+64965329 None:intergenic
TGGATTTGGGTCTGGAAATT+CGG 0.343491 3:+64970606 None:intergenic
AATGGCGAACGTGGCTGTTA+TGG 0.345758 3:-64970756 MsG0380015081.01.T01:CDS
GAAAGAGGGAAGTAGGGATT+TGG 0.355365 3:+64970586 None:intergenic
GTCCTTAGGATCTAAGTTCT+AGG 0.357771 3:-64965204 MsG0380015081.01.T01:three_prime_UTR
TTTCTTTCGCCATAACGTTC+TGG 0.358503 3:+64969289 None:intergenic
ACAACACAGCTCCTTAAATA+TGG 0.358835 3:-64969466 MsG0380015081.01.T01:CDS
ATTTAAGGAGCTGTGTTGTT+AGG 0.359978 3:+64969470 None:intergenic
GGGCAAGAGCCAGTGCAATT+AGG 0.362008 3:-64969426 MsG0380015081.01.T01:CDS
GTAATAAAGAACAGGATTAC+TGG 0.370944 3:-64966589 MsG0380015081.01.T01:CDS
CCCTATCCTAAATATGAATC+TGG 0.374851 3:-64965430 MsG0380015081.01.T01:CDS
TCAGGAGGCCTGTTGAGTTT+CGG 0.384959 3:+64969517 None:intergenic
CATTATCACCCCGCCTTGGT+AGG 0.385376 3:+64969239 None:intergenic
TAGGGATTTGGATTTGGGTC+TGG 0.392228 3:+64970598 None:intergenic
ATCTATATTTCACTCATTTG+AGG 0.401260 3:+64965168 None:intergenic
CCTGATGGAGGAGCGAAGAT+TGG 0.401689 3:+64970545 None:intergenic
AATTGCACTGGCTCTTGCCC+TGG 0.404316 3:+64969429 None:intergenic
CGCAGTTTCTTGGTAAAGTC+AGG 0.410742 3:+64966533 None:intergenic
TCGACCACCATTGTCAATAA+TGG 0.413683 3:+64969570 None:intergenic
TATTTAAAGGTGTTGTCCTT+AGG 0.414661 3:-64965218 MsG0380015081.01.T01:three_prime_UTR
TTCTCAAATTCCAGCTTAGT+AGG 0.423773 3:+64965472 None:intergenic
GCAGAGGTTCCAGAACGTTA+TGG 0.426513 3:-64969298 MsG0380015081.01.T01:CDS
AAATTCCAGCTTAGTAGGAT+TGG 0.428131 3:+64965477 None:intergenic
CCAATCTTCGCTCCTCCATC+AGG 0.435435 3:-64970545 MsG0380015081.01.T01:intron
TGGGAAACTTTCTTGCCCTC+TGG 0.443007 3:-64965403 MsG0380015081.01.T01:CDS
AATTTGAGAAGCCTGCAAAA+TGG 0.444037 3:-64965459 MsG0380015081.01.T01:CDS
TGCAAATGCAAAATTTATGC+TGG 0.444095 3:-64966669 MsG0380015081.01.T01:CDS
ATGAGTGCCTTACGCTGATC+AGG 0.446324 3:+64969499 None:intergenic
ATTCCATCTGCTAGTGGTGG+TGG 0.454414 3:+64970715 None:intergenic
GGAAAGTGCCGAAACTCAAC+AGG 0.455724 3:-64969525 MsG0380015081.01.T01:CDS
CCAGATTCATATTTAGGATA+GGG 0.459432 3:+64965430 None:intergenic
CTTGCCCTCTGGACAGAAAG+AGG 0.461986 3:-64965392 MsG0380015081.01.T01:CDS
TGCAACAATAAAATAATACT+TGG 0.464259 3:+64966688 None:intergenic
GAACGTTATGGCGAAAGAAA+TGG 0.468052 3:-64969286 MsG0380015081.01.T01:CDS
TATAAGAACCCTACCAAGGC+GGG 0.471140 3:-64969248 MsG0380015081.01.T01:CDS
CAGATTCATGAAATTAAGAC+TGG 0.474576 3:-64965554 MsG0380015081.01.T01:CDS
CTGATGGAGGAGCGAAGATT+GGG 0.477070 3:+64970546 None:intergenic
TGGAGAGCGTAATAAAGAAC+AGG 0.479792 3:-64966597 MsG0380015081.01.T01:CDS
ACGGAAGTAGGAGGAATTGA+AGG 0.481517 3:+64970668 None:intergenic
TCCCTACTTCCCTCTTTCAC+CGG 0.488108 3:-64970581 MsG0380015081.01.T01:CDS
TGCAAAATTTATGCTGGATG+AGG 0.488625 3:-64966663 MsG0380015081.01.T01:CDS
TTCCGGTTACCGAAACAGAA+TGG 0.489581 3:+64965346 None:intergenic
GATTGGGAGAGGACGAAGTC+CGG 0.490357 3:+64970562 None:intergenic
ATGATCACTCTTGCAAAAGA+TGG 0.491383 3:-64969388 MsG0380015081.01.T01:CDS
TCCGGTTACCGAAACAGAAT+GGG 0.495230 3:+64965347 None:intergenic
TAGTGTCAACCAACGGTCCA+TGG 0.496162 3:-64966493 MsG0380015081.01.T01:CDS
ATTTGAGAAGCCTGCAAAAT+GGG 0.501452 3:-64965458 MsG0380015081.01.T01:CDS
TTCCAGCTTAGTAGGATTGG+AGG 0.503729 3:+64965480 None:intergenic
AGTAGGAGGAATTGAAGGTA+AGG 0.505266 3:+64970673 None:intergenic
GCGGGGTGATAATGCACCTA+TGG 0.509687 3:-64969230 MsG0380015081.01.T01:CDS
AGGACGAAGTCCGGTGAAAG+AGG 0.511134 3:+64970571 None:intergenic
GGTGGTGGAGTTATTGGTGG+TGG 0.511605 3:+64970730 None:intergenic
TCCAGATTCATATTTAGGAT+AGG 0.511889 3:+64965429 None:intergenic
AGCCTCCAATCCTACTAAGC+TGG 0.514208 3:-64965482 MsG0380015081.01.T01:CDS
AGTGGTGGTGGAGTTATTGG+TGG 0.515661 3:+64970727 None:intergenic
TAAATATGAATCTGGATGGT+GGG 0.520478 3:-64965422 MsG0380015081.01.T01:CDS
TACCTAGAACTTAGATCCTA+AGG 0.520854 3:+64965202 None:intergenic
GTCCGGTGAAAGAGGGAAGT+AGG 0.521063 3:+64970579 None:intergenic
CTGGAAATTCGGAGTGTGGT+TGG 0.530465 3:+64970617 None:intergenic
TCATGTTCTTACGTGATCCA+TGG 0.536324 3:+64966476 None:intergenic
CAGCGTAAGGCACTCATTCG+AGG 0.548108 3:-64969493 MsG0380015081.01.T01:CDS
CATAAAAGGAGACAAGCTCT+TGG 0.549777 3:-64969358 MsG0380015081.01.T01:CDS
CGAGTCTATGCTATGAGACA+TGG 0.549900 3:-64969550 MsG0380015081.01.T01:CDS
ATTATCACCCCGCCTTGGTA+GGG 0.549919 3:+64969240 None:intergenic
AACATACTTCCTAATTGCAC+TGG 0.550604 3:+64969417 None:intergenic
TCCGGTGAAAGAGGGAAGTA+GGG 0.554379 3:+64970580 None:intergenic
TGTTCATGCTTTATTTGCAG+AGG 0.556642 3:-64969314 MsG0380015081.01.T01:CDS
AACTGAGAATTGAGACACTC+TGG 0.557561 3:-64970806 MsG0380015081.01.T01:five_prime_UTR
TTACGTGATCCATGGACCGT+TGG 0.559376 3:+64966484 None:intergenic
TTCACCTCTTTCTGTCCAGA+GGG 0.560963 3:+64965388 None:intergenic
AGTGAAGCGCAATGAAGAAA+CGG 0.561027 3:+64970649 None:intergenic
CTAAATATGAATCTGGATGG+TGG 0.563124 3:-64965423 MsG0380015081.01.T01:CDS
AAAATTTATGCTGGATGAGG+AGG 0.565968 3:-64966660 MsG0380015081.01.T01:CDS
AGTTTCACCATTATTGACAA+TGG 0.570374 3:-64969577 MsG0380015081.01.T01:CDS
GGACGAAGTCCGGTGAAAGA+GGG 0.581835 3:+64970572 None:intergenic
GTTCACCTCTTTCTGTCCAG+AGG 0.589301 3:+64965387 None:intergenic
CGCAATGAAGAAACGGAAGT+AGG 0.591833 3:+64970656 None:intergenic
GGAGGAGCGAAGATTGGGAG+AGG 0.593002 3:+64970551 None:intergenic
ACAAGTTCAATGTATGCCAT+AGG 0.593731 3:+64969214 None:intergenic
GGGTCTGGAAATTCGGAGTG+TGG 0.595280 3:+64970613 None:intergenic
TTCACCATTATTGACAATGG+TGG 0.599206 3:-64969574 MsG0380015081.01.T01:CDS
GGTGCATTATCACCCCGCCT+TGG 0.608519 3:+64969235 None:intergenic
CAGGCCTCCTGATCAGCGTA+AGG 0.609293 3:-64969506 MsG0380015081.01.T01:CDS
ATCCTAAATATGAATCTGGA+TGG 0.610093 3:-64965426 MsG0380015081.01.T01:CDS
TTGCCCTGGTTGTCTTGATG+CGG 0.610798 3:+64969443 None:intergenic
ACTCCACCACCACTAGCAGA+TGG 0.614018 3:-64970718 MsG0380015081.01.T01:CDS
ATGGCCGCATCAAGACAACC+AGG 0.621297 3:-64969447 MsG0380015081.01.T01:CDS
AGACATATTCCATCTGCTAG+TGG 0.621656 3:+64970709 None:intergenic
CGTTATGGCGAAAGAAATGG+TGG 0.626402 3:-64969283 MsG0380015081.01.T01:CDS
AATGAAGAAACGGAAGTAGG+AGG 0.630685 3:+64970659 None:intergenic
CATATTCCATCTGCTAGTGG+TGG 0.652801 3:+64970712 None:intergenic
TGAGAAGCCTGCAAAATGGG+TGG 0.654553 3:-64965455 MsG0380015081.01.T01:CDS
AGTGCCTTACGCTGATCAGG+AGG 0.656273 3:+64969502 None:intergenic
GTTGACACTAGAGCAACAGC+AGG 0.658553 3:+64966506 None:intergenic
GTTGCTCTAGTGTCAACCAA+CGG 0.671470 3:-64966500 MsG0380015081.01.T01:CDS
ATAAGAACCCTACCAAGGCG+GGG 0.673186 3:-64969247 MsG0380015081.01.T01:CDS
CTGACTTTACCAAGAAACTG+CGG 0.676341 3:-64966532 MsG0380015081.01.T01:CDS
AATGAAGGTATACCTGATGG+AGG 0.679743 3:+64970533 None:intergenic
GAATTATAAGAACCCTACCA+AGG 0.696668 3:-64969252 MsG0380015081.01.T01:CDS
TCTATGCTATGAGACATGGA+AGG 0.721858 3:-64969546 MsG0380015081.01.T01:CDS
TGGCCGCATCAAGACAACCA+GGG 0.726099 3:-64969446 MsG0380015081.01.T01:CDS
TTATAAGAACCCTACCAAGG+CGG 0.735151 3:-64969249 MsG0380015081.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGATCAAAATATAAAA+TGG - Chr3:64967884-64967903 MsG0380015081.01.T01:intron 10.0%
!! ATAAGATCAAAATATAAAAT+GGG - Chr3:64967885-64967904 MsG0380015081.01.T01:intron 10.0%
!! ATATATTATTAATGTTTGAA+AGG - Chr3:64968590-64968609 MsG0380015081.01.T01:intron 10.0%
!! TAAAATAAAGTAAGAATATA+AGG - Chr3:64968028-64968047 MsG0380015081.01.T01:intron 10.0%
!! TATATTATTAATGTTTGAAA+GGG - Chr3:64968591-64968610 MsG0380015081.01.T01:intron 10.0%
!!! GACTAAATAATATTTTATTA+AGG - Chr3:64967407-64967426 MsG0380015081.01.T01:intron 10.0%
!!! TTCAAACTTTTTAAAAATAT+TGG - Chr3:64969836-64969855 MsG0380015081.01.T01:intron 10.0%
!! TAAAAGTTTAAAAACACATA+TGG - Chr3:64967995-64968014 MsG0380015081.01.T01:intron 15.0%
!!! AAATTATGCATTTGTTTTAT+GGG - Chr3:64965481-64965500 MsG0380015081.01.T01:CDS 15.0%
!!! AGACATTTTTTAAATACTAT+TGG + Chr3:64969776-64969795 None:intergenic 15.0%
!!! TTTATATTTGAAATCAGATT+TGG - Chr3:64969647-64969666 MsG0380015081.01.T01:intron 15.0%
!!! TTTATGTTTCTTGAAATTTT+GGG + Chr3:64968390-64968409 None:intergenic 15.0%
!! AAAAAACAAAATGAAAACTC+TGG + Chr3:64970129-64970148 None:intergenic 20.0%
!! AAAAGAAATTGTAAGAAAGA+AGG - Chr3:64970274-64970293 MsG0380015081.01.T01:intron 20.0%
!! AAAGAAATTGTAAGAAAGAA+GGG - Chr3:64970275-64970294 MsG0380015081.01.T01:intron 20.0%
!! AAGGCAGTATAATTATTTAA+AGG - Chr3:64970724-64970743 MsG0380015081.01.T01:CDS 20.0%
!! AATACAAATACAACTAAACA+TGG + Chr3:64966872-64966891 None:intergenic 20.0%
!! AATTTGTGTAACTCAATAAA+CGG + Chr3:64967592-64967611 None:intergenic 20.0%
!! ATACAAATACAACTAAACAT+GGG + Chr3:64966871-64966890 None:intergenic 20.0%
!! ATATGGCAAATAAAATGATT+TGG + Chr3:64969722-64969741 None:intergenic 20.0%
!! ATTTAATTATTGTATTGCCT+CGG - Chr3:64965620-64965639 MsG0380015081.01.T01:intron 20.0%
!! GAAGAAATTGTTAAATATGT+TGG + Chr3:64967975-64967994 None:intergenic 20.0%
!! TAGATAATAATTACGTTTAC+AGG - Chr3:64965682-64965701 MsG0380015081.01.T01:intron 20.0%
!! TAGATTTAGATAACTAGATA+AGG - Chr3:64968051-64968070 MsG0380015081.01.T01:intron 20.0%
!! TCAATATTTAAACGAGAATT+GGG + Chr3:64967117-64967136 None:intergenic 20.0%
!! TGCAACAATAAAATAATACT+TGG + Chr3:64969270-64969289 None:intergenic 20.0%
!! TTCAATATTTAAACGAGAAT+TGG + Chr3:64967118-64967137 None:intergenic 20.0%
!! TTCATATTATACCATTTGAA+AGG + Chr3:64970256-64970275 None:intergenic 20.0%
!! TTTACATTAACAAAAATCGT+TGG + Chr3:64970652-64970671 None:intergenic 20.0%
!!! AAAAACAATTACACTTTTCA+AGG - Chr3:64967385-64967404 MsG0380015081.01.T01:intron 20.0%
!!! AATATTTGTTTTCTACTAAG+TGG - Chr3:64968514-64968533 MsG0380015081.01.T01:intron 20.0%
!!! AATTAGCTTAAAATTATGGA+CGG + Chr3:64967808-64967827 None:intergenic 20.0%
!!! AATTATGCATTTGTTTTATG+GGG - Chr3:64965482-64965501 MsG0380015081.01.T01:CDS 20.0%
!!! ATAATTTTAAGCTAATTTGG+AGG - Chr3:64967811-64967830 MsG0380015081.01.T01:intron 20.0%
!!! ATCAAGGATTTTCAATTTTA+TGG + Chr3:64968665-64968684 None:intergenic 20.0%
!!! CATTTTTTAAATACTATTGG+TGG + Chr3:64969773-64969792 None:intergenic 20.0%
!!! CTCAAACTTTTTTTCTAATT+AGG - Chr3:64967921-64967940 MsG0380015081.01.T01:intron 20.0%
!!! GAAATTATGCATTTGTTTTA+TGG - Chr3:64965480-64965499 MsG0380015081.01.T01:CDS 20.0%
!!! GATTTTTGTTAATGTAAAAC+TGG - Chr3:64970654-64970673 MsG0380015081.01.T01:CDS 20.0%
!!! GTTTATGTTTCTTGAAATTT+TGG + Chr3:64968391-64968410 None:intergenic 20.0%
!!! TCAAATTATAGAAGTTGATT+TGG - Chr3:64967206-64967225 MsG0380015081.01.T01:intron 20.0%
!!! TCATTTTATTTGCCATATAT+TGG - Chr3:64969724-64969743 MsG0380015081.01.T01:intron 20.0%
!!! TCCAAATTAGCTTAAAATTA+TGG + Chr3:64967812-64967831 None:intergenic 20.0%
!!! TCCATAATTTTAAGCTAATT+TGG - Chr3:64967808-64967827 MsG0380015081.01.T01:intron 20.0%
!!! TTGATTTGGATGATAATATA+AGG - Chr3:64967220-64967239 MsG0380015081.01.T01:intron 20.0%
!!! TTTGTTATACATGATATTCT+TGG - Chr3:64966977-64966996 MsG0380015081.01.T01:intron 20.0%
!!! TTTTCTAATTAGGTAAACAA+TGG - Chr3:64967931-64967950 MsG0380015081.01.T01:intron 20.0%
! AGAAATAGATCTACAAATTC+CGG + Chr3:64970629-64970648 None:intergenic 25.0%
! AGTTATTGAAGTAGTATAAC+TGG + Chr3:64966061-64966080 None:intergenic 25.0%
! AGTTCATTTACGTATCAAAT+TGG - Chr3:64969068-64969087 MsG0380015081.01.T01:intron 25.0%
! ATAGTTCTCACCTTAAAATT+CGG - Chr3:64965853-64965872 MsG0380015081.01.T01:intron 25.0%
! ATCTATATTTCACTCATTTG+AGG + Chr3:64970790-64970809 None:intergenic 25.0%
! ATTTGCCATATATTGGATTT+GGG - Chr3:64969731-64969750 MsG0380015081.01.T01:intron 25.0%
! CAAGATGATTCTTAAAATTC+GGG + Chr3:64965904-64965923 None:intergenic 25.0%
! CCAAGATGATTCTTAAAATT+CGG + Chr3:64965905-64965924 None:intergenic 25.0%
! GCTGTCAACATATAATAAAA+TGG - Chr3:64970326-64970345 MsG0380015081.01.T01:intron 25.0%
! TATTATACCATTTGAAAGGT+TGG + Chr3:64970252-64970271 None:intergenic 25.0%
! TATTTGCCATATATTGGATT+TGG - Chr3:64969730-64969749 MsG0380015081.01.T01:intron 25.0%
! TCATTCTCTCTTATCTTTAA+AGG + Chr3:64968847-64968866 None:intergenic 25.0%
! TGAACTTGTGTAATTATTAG+CGG - Chr3:64966755-64966774 MsG0380015081.01.T01:intron 25.0%
! TGAGTTACACAAATTATACT+CGG - Chr3:64967597-64967616 MsG0380015081.01.T01:intron 25.0%
! TGCTGAATTTCAAAAGATAA+TGG + Chr3:64966311-64966330 None:intergenic 25.0%
! TTAAAGATAAGAGAGAATGA+TGG - Chr3:64968847-64968866 MsG0380015081.01.T01:intron 25.0%
! TTCATTGTTAGTGCTAATTT+AGG + Chr3:64967624-64967643 None:intergenic 25.0%
!! ATTGAGATTTTCATCTTCAA+GGG - Chr3:64967320-64967339 MsG0380015081.01.T01:intron 25.0%
!! TAATAGACTTACATCGATTA+TGG + Chr3:64967434-64967453 None:intergenic 25.0%
!! TATTTTGCATTTGTGTATAG+AGG - Chr3:64967297-64967316 MsG0380015081.01.T01:intron 25.0%
!! TTTTGTATCAGCTAGAAATA+CGG - Chr3:64965805-64965824 MsG0380015081.01.T01:intron 25.0%
!!! ATTTTTTTCCCATTCTGTTT+CGG - Chr3:64970600-64970619 MsG0380015081.01.T01:CDS 25.0%
!!! CAAAAGATAATGGATACTAT+GGG + Chr3:64966301-64966320 None:intergenic 25.0%
!!! TCAAAAGATAATGGATACTA+TGG + Chr3:64966302-64966321 None:intergenic 25.0%
!!! TCTTTTTTGAGTTGTATGTA+CGG - Chr3:64966904-64966923 MsG0380015081.01.T01:intron 25.0%
!!! TTTTGTTTACTAGTAGCTTT+TGG - Chr3:64965556-64965575 MsG0380015081.01.T01:intron 25.0%
AAGATGGTTCTCTACATAAA+AGG - Chr3:64966583-64966602 MsG0380015081.01.T01:CDS 30.0%
AATATAAGGTCATGAAAGAG+AGG - Chr3:64967234-64967253 MsG0380015081.01.T01:intron 30.0%
AGTTTCACCATTATTGACAA+TGG - Chr3:64966378-64966397 MsG0380015081.01.T01:intron 30.0%
ATAACTGGATTGAATTTCAG+TGG + Chr3:64966046-64966065 None:intergenic 30.0%
ATCCTAAATATGAATCTGGA+TGG - Chr3:64970529-64970548 MsG0380015081.01.T01:intron 30.0%
ATGATACCATGTTATAAACC+AGG + Chr3:64965969-64965988 None:intergenic 30.0%
ATGCAAAATAGAACACAATG+AGG + Chr3:64967287-64967306 None:intergenic 30.0%
ATGCAATGGAAATGAAATGA+AGG + Chr3:64965440-64965459 None:intergenic 30.0%
CAATTAACTGTTGTTCTTGA+TGG - Chr3:64969149-64969168 MsG0380015081.01.T01:intron 30.0%
CAGATTCATGAAATTAAGAC+TGG - Chr3:64970401-64970420 MsG0380015081.01.T01:intron 30.0%
CTAATAATTGCATCCCATAA+GGG + Chr3:64966784-64966803 None:intergenic 30.0%
CTATCATACTGATATTATCG+AGG - Chr3:64967159-64967178 MsG0380015081.01.T01:intron 30.0%
CTGTCATAAACTATGAAAAG+TGG - Chr3:64969534-64969553 MsG0380015081.01.T01:CDS 30.0%
GACTCAAAATAATGTGATCA+AGG + Chr3:64968681-64968700 None:intergenic 30.0%
GATAAGAGAAAAAGAAACCT+TGG + Chr3:64968477-64968496 None:intergenic 30.0%
GGAAAACTATCCAAGAATTT+AGG + Chr3:64969404-64969423 None:intergenic 30.0%
GTAATAAAGAACAGGATTAC+TGG - Chr3:64969366-64969385 MsG0380015081.01.T01:CDS 30.0%
TAAATATGAATCTGGATGGT+GGG - Chr3:64970533-64970552 MsG0380015081.01.T01:intron 30.0%
TGAAAAGTGGACAATTCATT+TGG - Chr3:64969547-64969566 MsG0380015081.01.T01:CDS 30.0%
TGCAAATGCAAAATTTATGC+TGG - Chr3:64969286-64969305 MsG0380015081.01.T01:CDS 30.0%
TTAAAGAGTCTCTTATGCAA+TGG + Chr3:64965454-64965473 None:intergenic 30.0%
TTTGAATTTACTCTTGTTGC+TGG + Chr3:64969822-64969841 None:intergenic 30.0%
TTTGATATTAGCCAATGACT+GGG - Chr3:64969689-64969708 MsG0380015081.01.T01:intron 30.0%
! AGAACTACTAGTTTCATTTC+CGG - Chr3:64969091-64969110 MsG0380015081.01.T01:intron 30.0%
! AGTCATTGGCTAATATCAAA+CGG + Chr3:64969689-64969708 None:intergenic 30.0%
! ATTACAAGCATGCAATTTTG+AGG + Chr3:64968638-64968657 None:intergenic 30.0%
! CCAGATTCATATTTAGGATA+GGG + Chr3:64970528-64970547 None:intergenic 30.0%
! GAACTTTTGCAGATTAAAGA+TGG + Chr3:64966938-64966957 None:intergenic 30.0%
! GATTGAGATTTTCATCTTCA+AGG - Chr3:64967319-64967338 MsG0380015081.01.T01:intron 30.0%
! TCCAGATTCATATTTAGGAT+AGG + Chr3:64970529-64970548 None:intergenic 30.0%
! TCTTGATGGTTTATAAGCAT+TGG - Chr3:64969163-64969182 MsG0380015081.01.T01:intron 30.0%
!! ACCTTAAAATTCGGTTTTGT+CGG - Chr3:64965862-64965881 MsG0380015081.01.T01:intron 30.0%
!! ATTCTTCATTTTTCAGTGCT+TGG - Chr3:64969506-64969525 MsG0380015081.01.T01:CDS 30.0%
!! CCGAATTTTAAGAATCATCT+TGG - Chr3:64965902-64965921 MsG0380015081.01.T01:intron 30.0%
!! GCTTTCAGTTTTGTAATCTT+TGG - Chr3:64970701-64970720 MsG0380015081.01.T01:CDS 30.0%
!! TATTTAAAGGTGTTGTCCTT+AGG - Chr3:64970737-64970756 MsG0380015081.01.T01:CDS 30.0%
!! TCAGTTTTGTAATCTTTGGA+AGG - Chr3:64970705-64970724 MsG0380015081.01.T01:CDS 30.0%
!!! ACTTATTGAGTTGGTTTTTG+TGG - Chr3:64969197-64969216 MsG0380015081.01.T01:intron 30.0%
!!! CATTTGTTTTATGGGGAAAT+TGG - Chr3:64965489-64965508 MsG0380015081.01.T01:CDS 30.0%
!!! TGCAATTTTGAGGTCAATTT+TGG + Chr3:64968628-64968647 None:intergenic 30.0%
!!! TTCTTGAAATTTTGGGTTGT+GGG + Chr3:64968383-64968402 None:intergenic 30.0%
!!! TTTCTTGAAATTTTGGGTTG+TGG + Chr3:64968384-64968403 None:intergenic 30.0%
!!! TTTTTGTTTTTACCCCTTAG+TGG - Chr3:64970144-64970163 MsG0380015081.01.T01:intron 30.0%
AAAATTTATGCTGGATGAGG+AGG - Chr3:64969295-64969314 MsG0380015081.01.T01:CDS 35.0%
AAATTCCAGCTTAGTAGGAT+TGG + Chr3:64970481-64970500 None:intergenic 35.0%
AACATACTTCCTAATTGCAC+TGG + Chr3:64966541-64966560 None:intergenic 35.0%
AAGAGAAAAAGAAACCTTGG+TGG + Chr3:64968474-64968493 None:intergenic 35.0%
AAGAGTGAGTTCTGTTAGAA+AGG + Chr3:64968340-64968359 None:intergenic 35.0%
AAGTAAGGCACAGTGTTTAA+CGG + Chr3:64966001-64966020 None:intergenic 35.0%
AAGTCAGCATATCTTAATCG+TGG - Chr3:64969595-64969614 MsG0380015081.01.T01:intron 35.0%
AATTCCTCCTGAAGCAAAAA+TGG - Chr3:64965181-64965200 MsG0380015081.01.T01:three_prime_UTR 35.0%
AATTTGAGAAGCCTGCAAAA+TGG - Chr3:64970496-64970515 MsG0380015081.01.T01:intron 35.0%
ACAACACAGCTCCTTAAATA+TGG - Chr3:64966489-64966508 MsG0380015081.01.T01:CDS 35.0%
ACAAGTTCAATGTATGCCAT+AGG + Chr3:64966744-64966763 None:intergenic 35.0%
AGGAACCCAAATCCAATATA+TGG + Chr3:64969739-64969758 None:intergenic 35.0%
AGTCAATGTCAGATCACTTT+AGG + Chr3:64969004-64969023 None:intergenic 35.0%
AGTCAGCATATCTTAATCGT+GGG - Chr3:64969596-64969615 MsG0380015081.01.T01:intron 35.0%
AGTCAGTTTAGTACCTAAAG+TGG - Chr3:64968697-64968716 MsG0380015081.01.T01:intron 35.0%
ATATTGAAAAGCAAGAACCC+TGG - Chr3:64967130-64967149 MsG0380015081.01.T01:intron 35.0%
ATCAGCTAGAAATACGGTAT+AGG - Chr3:64965811-64965830 MsG0380015081.01.T01:intron 35.0%
ATCGTGGGATTAAAATCAGA+CGG - Chr3:64969611-64969630 MsG0380015081.01.T01:intron 35.0%
ATCTATAGCGAGGACAAATT+CGG + Chr3:64965758-64965777 None:intergenic 35.0%
ATGAATCACCAATTCAGTTC+CGG + Chr3:64969113-64969132 None:intergenic 35.0%
ATGAGCATGACAAACATTCA+AGG - Chr3:64967074-64967093 MsG0380015081.01.T01:intron 35.0%
ATGATCACTCTTGCAAAAGA+TGG - Chr3:64966567-64966586 MsG0380015081.01.T01:CDS 35.0%
ATGTGTGTGCTTAGTAAGTA+AGG + Chr3:64967525-64967544 None:intergenic 35.0%
ATTTGAGAAGCCTGCAAAAT+GGG - Chr3:64970497-64970516 MsG0380015081.01.T01:intron 35.0%
CAACTTGAACAAGTAAAACG+AGG + Chr3:64966209-64966228 None:intergenic 35.0%
CACCATCCAGATTCATATTT+AGG + Chr3:64970534-64970553 None:intergenic 35.0%
CAGTATGATAGCTTAAACCA+GGG + Chr3:64967150-64967169 None:intergenic 35.0%
CCCTATCCTAAATATGAATC+TGG - Chr3:64970525-64970544 MsG0380015081.01.T01:intron 35.0%
CTAAATATGAATCTGGATGG+TGG - Chr3:64970532-64970551 MsG0380015081.01.T01:intron 35.0%
GAAGAAACAGCAGTGATAAA+AGG + Chr3:64968413-64968432 None:intergenic 35.0%
GAATTATAAGAACCCTACCA+AGG - Chr3:64966703-64966722 MsG0380015081.01.T01:intron 35.0%
GACGTTCAAATAGTTGTTCT+TGG + Chr3:64969328-64969347 None:intergenic 35.0%
GCTAATAATTGCATCCCATA+AGG + Chr3:64966785-64966804 None:intergenic 35.0%
GTCAATGTCAGATCACTTTA+GGG + Chr3:64969003-64969022 None:intergenic 35.0%
GTTTGATATTAGCCAATGAC+TGG - Chr3:64969688-64969707 MsG0380015081.01.T01:intron 35.0%
TACCTAGAACTTAGATCCTA+AGG + Chr3:64970756-64970775 None:intergenic 35.0%
TCACGTAGTACTTATTGAGT+TGG - Chr3:64969188-64969207 MsG0380015081.01.T01:intron 35.0%
TCACTCTTTACCAATGAGTT+TGG - Chr3:64968352-64968371 MsG0380015081.01.T01:intron 35.0%
TCAGTATGATAGCTTAAACC+AGG + Chr3:64967151-64967170 None:intergenic 35.0%
TGAGCATGACAAACATTCAA+GGG - Chr3:64967075-64967094 MsG0380015081.01.T01:intron 35.0%
TGCAAAATTTATGCTGGATG+AGG - Chr3:64969292-64969311 MsG0380015081.01.T01:CDS 35.0%
TGGATTCCTGGTTTATAACA+TGG - Chr3:64965960-64965979 MsG0380015081.01.T01:intron 35.0%
TGTAGATGAGAGAGAATGAT+TGG - Chr3:64968891-64968910 MsG0380015081.01.T01:intron 35.0%
TGTCATTGAGCCTAAATTCT+TGG - Chr3:64969391-64969410 MsG0380015081.01.T01:CDS 35.0%
TGTGATAAGATAACGCACAA+AGG + Chr3:64968213-64968232 None:intergenic 35.0%
TTAGACTCAACTGTTACAGT+TGG + Chr3:64966841-64966860 None:intergenic 35.0%
TTAGCTATTACGCTTAGCTT+AGG + Chr3:64969925-64969944 None:intergenic 35.0%
TTATAAACCAGGAATCCAAG+AGG + Chr3:64965958-64965977 None:intergenic 35.0%
TTCACCATTATTGACAATGG+TGG - Chr3:64966381-64966400 MsG0380015081.01.T01:intron 35.0%
TTCTCAAATTCCAGCTTAGT+AGG + Chr3:64970486-64970505 None:intergenic 35.0%
TTGACACAAGTAATAATCCG+AGG + Chr3:64965640-64965659 None:intergenic 35.0%
TTGTGTGAGCTTAGCATAAA+TGG - Chr3:64967028-64967047 MsG0380015081.01.T01:intron 35.0%
TTTATGCTTGCATCAAGAGT+TGG - Chr3:64969958-64969977 MsG0380015081.01.T01:intron 35.0%
TTTCATTTCCGGAACTGAAT+TGG - Chr3:64969102-64969121 MsG0380015081.01.T01:intron 35.0%
! ATTTAAGGAGCTGTGTTGTT+AGG + Chr3:64966488-64966507 None:intergenic 35.0%
! GTCTCAATTCTCAGTTTTAC+AGG + Chr3:64965145-64965164 None:intergenic 35.0%
! TCCGACAAAACCGAATTTTA+AGG + Chr3:64965866-64965885 None:intergenic 35.0%
! TGAAATGAAGGTATACCTGA+TGG + Chr3:64965428-64965447 None:intergenic 35.0%
! TGATTGGTTAAACGAGAGAT+AGG - Chr3:64968907-64968926 MsG0380015081.01.T01:intron 35.0%
! TTTGAGTTCACCAACTACAA+TGG - Chr3:64968277-64968296 MsG0380015081.01.T01:intron 35.0%
!! AGTTGGTGAACTCAAAGTTA+AGG + Chr3:64968273-64968292 None:intergenic 35.0%
!! ATGACACCTTCTAGTTCATA+AGG + Chr3:64968812-64968831 None:intergenic 35.0%
!! CAAGTAAAACGAGGTATTGA+TGG + Chr3:64966200-64966219 None:intergenic 35.0%
!! TATGAACTAGAAGGTGTCAT+TGG - Chr3:64968812-64968831 MsG0380015081.01.T01:intron 35.0%
!! TATTGGTGGACTCTAAAAAG+AGG + Chr3:64969759-64969778 None:intergenic 35.0%
!! TGTTCATGCTTTATTTGCAG+AGG - Chr3:64966641-64966660 MsG0380015081.01.T01:CDS 35.0%
!!! TAGAAGGTGTCATTGGTTTT+TGG - Chr3:64968819-64968838 MsG0380015081.01.T01:intron 35.0%
AACTGAGAATTGAGACACTC+TGG - Chr3:64965149-64965168 MsG0380015081.01.T01:three_prime_UTR 40.0%
AATGAAGAAACGGAAGTAGG+AGG + Chr3:64965299-64965318 None:intergenic 40.0%
AGACATATTCCATCTGCTAG+TGG + Chr3:64965249-64965268 None:intergenic 40.0%
AGTAGGAGGAATTGAAGGTA+AGG + Chr3:64965285-64965304 None:intergenic 40.0%
AGTGAAGCGCAATGAAGAAA+CGG + Chr3:64965309-64965328 None:intergenic 40.0%
ATAATTGCATCCCATAAGGG+CGG + Chr3:64966781-64966800 None:intergenic 40.0%
ATCTATGTCACTGACGCATA+TGG - Chr3:64965593-64965612 MsG0380015081.01.T01:intron 40.0%
CATAAAAGGAGACAAGCTCT+TGG - Chr3:64966597-64966616 MsG0380015081.01.T01:CDS 40.0%
CTGAACAATCCGATCTTGAT+CGG - Chr3:64970017-64970036 MsG0380015081.01.T01:intron 40.0%
CTGACTTTACCAAGAAACTG+CGG - Chr3:64969423-64969442 MsG0380015081.01.T01:CDS 40.0%
GAACGTTATGGCGAAAGAAA+TGG - Chr3:64966669-64966688 MsG0380015081.01.T01:CDS 40.0%
GAGAACTAAGCACACACATT+AGG - Chr3:64967554-64967573 MsG0380015081.01.T01:intron 40.0%
GAGCATGACAAACATTCAAG+GGG - Chr3:64967076-64967095 MsG0380015081.01.T01:intron 40.0%
GATAGGAACCAATGTACCTA+AGG - Chr3:64968924-64968943 MsG0380015081.01.T01:intron 40.0%
GCAATAGCAGATCAGATCAA+AGG - Chr3:64966133-64966152 MsG0380015081.01.T01:intron 40.0%
GGAAGTAGGGATTTGGATTT+GGG + Chr3:64965365-64965384 None:intergenic 40.0%
GTCCTTAGGATCTAAGTTCT+AGG - Chr3:64970751-64970770 MsG0380015081.01.T01:CDS 40.0%
GTTATGACAACAGCAAAGAG+TGG + Chr3:64968135-64968154 None:intergenic 40.0%
GTTCTCTTGAAGACCACTTT+AGG + Chr3:64968713-64968732 None:intergenic 40.0%
GTTTGAGCTACCATTGTAGT+TGG + Chr3:64968290-64968309 None:intergenic 40.0%
TAGCGATCCAACCTTTCAAA+TGG - Chr3:64970242-64970261 MsG0380015081.01.T01:intron 40.0%
TAGCTTAGGTGGTTAACTGT+AGG + Chr3:64969911-64969930 None:intergenic 40.0%
TCATAAGGCCTTCACAATCT+AGG + Chr3:64968797-64968816 None:intergenic 40.0%
TCATGTTCTTACGTGATCCA+TGG + Chr3:64969482-64969501 None:intergenic 40.0%
TCGACCACCATTGTCAATAA+TGG + Chr3:64966388-64966407 None:intergenic 40.0%
TCTATAGCGAGGACAAATTC+GGG + Chr3:64965757-64965776 None:intergenic 40.0%
TCTATGCTATGAGACATGGA+AGG - Chr3:64966409-64966428 MsG0380015081.01.T01:intron 40.0%
TCTGTTCAATCTGACAACGT+TGG - Chr3:64968431-64968450 MsG0380015081.01.T01:intron 40.0%
TCTTGATGCGGCCATATTTA+AGG + Chr3:64966503-64966522 None:intergenic 40.0%
TGGATTTGGGTCTGGAAATT+CGG + Chr3:64965352-64965371 None:intergenic 40.0%
TGTCGAATCCTAGATTGTGA+AGG - Chr3:64968786-64968805 MsG0380015081.01.T01:intron 40.0%
TTAGCAACTGACACCACTAA+GGG + Chr3:64970160-64970179 None:intergenic 40.0%
TTATAAGAACCCTACCAAGG+CGG - Chr3:64966706-64966725 MsG0380015081.01.T01:intron 40.0%
TTCATCTTCAAGGGTGAAAC+TGG - Chr3:64967329-64967348 MsG0380015081.01.T01:intron 40.0%
TTTAGCAACTGACACCACTA+AGG + Chr3:64970161-64970180 None:intergenic 40.0%
TTTCTTTCGCCATAACGTTC+TGG + Chr3:64966669-64966688 None:intergenic 40.0%
! AATGAAGGTATACCTGATGG+AGG + Chr3:64965425-64965444 None:intergenic 40.0%
! ATCAAGAGTTGGTCATTCGT+GGG - Chr3:64969969-64969988 MsG0380015081.01.T01:intron 40.0%
! GACGAAAGATTGTTCTAGCT+AGG + Chr3:64968748-64968767 None:intergenic 40.0%
! GTTAGAAAGGATGTGCCTTT+TGG + Chr3:64968327-64968346 None:intergenic 40.0%
! TCACAATCTAGGATTCGACA+GGG + Chr3:64968786-64968805 None:intergenic 40.0%
! TGAAGGCCTTATGAACTAGA+AGG - Chr3:64968803-64968822 MsG0380015081.01.T01:intron 40.0%
! TGGAGAGCGTAATAAAGAAC+AGG - Chr3:64969358-64969377 MsG0380015081.01.T01:CDS 40.0%
! TTCACAATCTAGGATTCGAC+AGG + Chr3:64968787-64968806 None:intergenic 40.0%
! TTTTGCTTAAACCCTCCAGT+AGG + Chr3:64968971-64968990 None:intergenic 40.0%
!! AGACTGGATCGAGTTTTATC+AGG - Chr3:64970417-64970436 MsG0380015081.01.T01:intron 40.0%
!! CAGATCAAAGGTGTTCTCAT+AGG - Chr3:64966145-64966164 MsG0380015081.01.T01:intron 40.0%
AAGAGAGAGTGGGACAATTC+GGG + Chr3:64968093-64968112 None:intergenic 45.0%
AAGGTTGGATCGCTATCTGA+TGG + Chr3:64970237-64970256 None:intergenic 45.0%
AATCTGCCAAAACACGCACA+GGG + Chr3:64970387-64970406 None:intergenic 45.0%
ACAATCCGATCTTGATCGGA+CGG - Chr3:64970021-64970040 MsG0380015081.01.T01:intron 45.0%
ACCAATGTACCTAAGGCCAA+TGG - Chr3:64968931-64968950 MsG0380015081.01.T01:intron 45.0%
ACGGAAGTAGGAGGAATTGA+AGG + Chr3:64965290-64965309 None:intergenic 45.0%
AGGACTGAACATCTATAGCG+AGG + Chr3:64965768-64965787 None:intergenic 45.0%
CAGCAAAGAGTGGAGAAAGA+TGG + Chr3:64968125-64968144 None:intergenic 45.0%
CATATTCCATCTGCTAGTGG+TGG + Chr3:64965246-64965265 None:intergenic 45.0%
CCAAGTGAAATCCTACTGGA+GGG - Chr3:64968957-64968976 MsG0380015081.01.T01:intron 45.0%
CCACTCTTACCTCTTCCAAA+AGG - Chr3:64968309-64968328 MsG0380015081.01.T01:intron 45.0%
CGAGTCTATGCTATGAGACA+TGG - Chr3:64966405-64966424 MsG0380015081.01.T01:intron 45.0%
CGCAATGAAGAAACGGAAGT+AGG + Chr3:64965302-64965321 None:intergenic 45.0%
CGCAGTTTCTTGGTAAAGTC+AGG + Chr3:64969425-64969444 None:intergenic 45.0%
CGTTATGGCGAAAGAAATGG+TGG - Chr3:64966672-64966691 MsG0380015081.01.T01:CDS 45.0%
GAAAGAGGGAAGTAGGGATT+TGG + Chr3:64965372-64965391 None:intergenic 45.0%
GAAGAGAGAGTGGGACAATT+CGG + Chr3:64968094-64968113 None:intergenic 45.0%
GAAGATGTGTAGAGAGAGTG+AGG + Chr3:64968172-64968191 None:intergenic 45.0%
GAATCATCTTGGCACTCTTC+TGG - Chr3:64965913-64965932 MsG0380015081.01.T01:intron 45.0%
GAGTGGAGAAAGATGGCAAT+TGG + Chr3:64968118-64968137 None:intergenic 45.0%
GCATCCAAGTGAAATCCTAC+TGG - Chr3:64968953-64968972 MsG0380015081.01.T01:intron 45.0%
GCTATTACGCTTAGCTTAGG+TGG + Chr3:64969922-64969941 None:intergenic 45.0%
GGATTTCACTTGGATGCCAT+TGG + Chr3:64968950-64968969 None:intergenic 45.0%
GGGAAGTAGGGATTTGGATT+TGG + Chr3:64965366-64965385 None:intergenic 45.0%
GTGGTTAACTGTAGGTGACT+GGG + Chr3:64969903-64969922 None:intergenic 45.0%
GTTGCTCTAGTGTCAACCAA+CGG - Chr3:64969455-64969474 MsG0380015081.01.T01:CDS 45.0%
TAAGCAGAAGCCTGAGTTCT+TGG + Chr3:64967006-64967025 None:intergenic 45.0%
TAGCAACTGACACCACTAAG+GGG + Chr3:64970159-64970178 None:intergenic 45.0%
TAGGGATTTGGATTTGGGTC+TGG + Chr3:64965360-64965379 None:intergenic 45.0%
TATAAGAACCCTACCAAGGC+GGG - Chr3:64966707-64966726 MsG0380015081.01.T01:intron 45.0%
TCCAAGTGAAATCCTACTGG+AGG - Chr3:64968956-64968975 MsG0380015081.01.T01:intron 45.0%
TCCATGCCAGACATGCAAAT+CGG + Chr3:64970088-64970107 None:intergenic 45.0%
TCCCATTCTGTTTCGGTAAC+CGG - Chr3:64970607-64970626 MsG0380015081.01.T01:CDS 45.0%
TCCGGTTACCGAAACAGAAT+GGG + Chr3:64970611-64970630 None:intergenic 45.0%
TGAAGCAAAAATGGCGAACG+TGG - Chr3:64965190-64965209 MsG0380015081.01.T01:three_prime_UTR 45.0%
TGGTTAACTGTAGGTGACTG+GGG + Chr3:64969902-64969921 None:intergenic 45.0%
TTCACCTCTTTCTGTCCAGA+GGG + Chr3:64970570-64970589 None:intergenic 45.0%
TTCCAGCTTAGTAGGATTGG+AGG + Chr3:64970478-64970497 None:intergenic 45.0%
TTCCGGTTACCGAAACAGAA+TGG + Chr3:64970612-64970631 None:intergenic 45.0%
TTCTTGGCTACCAAGAACTC+AGG - Chr3:64966993-64967012 MsG0380015081.01.T01:intron 45.0%
TTTGAACGTCGTCGCTACTA+TGG - Chr3:64969338-64969357 MsG0380015081.01.T01:CDS 45.0%
! CATCAAGAGTTGGTCATTCG+TGG - Chr3:64969968-64969987 MsG0380015081.01.T01:intron 45.0%
! GAAAAAGAAACCTTGGTGGC+AGG + Chr3:64968470-64968489 None:intergenic 45.0%
! TCTCATTTTCCTGCACCTCT+TGG - Chr3:64965940-64965959 MsG0380015081.01.T01:intron 45.0%
!! AAGGATGTGCCTTTTGGAAG+AGG + Chr3:64968321-64968340 None:intergenic 45.0%
!! CCTTTTGGAAGAGGTAAGAG+TGG + Chr3:64968312-64968331 None:intergenic 45.0%
!!! ACGTTCGCCATTTTTGCTTC+AGG + Chr3:64965191-64965210 None:intergenic 45.0%
!!! TTCGCCATTTTTGCTTCAGG+AGG + Chr3:64965188-64965207 None:intergenic 45.0%
AAACACATCCGCTCATGCTC+AGG + Chr3:64965788-64965807 None:intergenic 50.0%
AATGGCGAACGTGGCTGTTA+TGG - Chr3:64965199-64965218 MsG0380015081.01.T01:three_prime_UTR 50.0%
ACAAGAGCTAGCACGATGCT+TGG - Chr3:64968239-64968258 MsG0380015081.01.T01:intron 50.0%
ACTCTGGATTGCTTGCAGTC+AGG + Chr3:64970113-64970132 None:intergenic 50.0%
AGAGAGAGTGGGACAATTCG+GGG + Chr3:64968092-64968111 None:intergenic 50.0%
AGCCTCCAATCCTACTAAGC+TGG - Chr3:64970473-64970492 MsG0380015081.01.T01:intron 50.0%
ATAAGAACCCTACCAAGGCG+GGG - Chr3:64966708-64966727 MsG0380015081.01.T01:intron 50.0%
ATAGCGAGGACAAATTCGGG+TGG + Chr3:64965754-64965773 None:intergenic 50.0%
ATCTGCCAAAACACGCACAG+GGG + Chr3:64970386-64970405 None:intergenic 50.0%
ATGAGTGCCTTACGCTGATC+AGG + Chr3:64966459-64966478 None:intergenic 50.0%
ATTATCACCCCGCCTTGGTA+GGG + Chr3:64966718-64966737 None:intergenic 50.0%
ATTATTAGCGGCCGCCCTTA+TGG - Chr3:64966767-64966786 MsG0380015081.01.T01:intron 50.0%
ATTCCATCTGCTAGTGGTGG+TGG + Chr3:64965243-64965262 None:intergenic 50.0%
CCATGCCAGACATGCAAATC+GGG + Chr3:64970087-64970106 None:intergenic 50.0%
CCCTCCAGTAGGATTTCACT+TGG + Chr3:64968960-64968979 None:intergenic 50.0%
CTGATGGAGGAGCGAAGATT+GGG + Chr3:64965412-64965431 None:intergenic 50.0%
CTGGAAATTCGGAGTGTGGT+TGG + Chr3:64965341-64965360 None:intergenic 50.0%
GAATCTGCCAAAACACGCAC+AGG + Chr3:64970388-64970407 None:intergenic 50.0%
GACAATTCGGGGGGATATCA+TGG + Chr3:64968081-64968100 None:intergenic 50.0%
GCAATTGGCGAAGAGAGAGT+GGG + Chr3:64968103-64968122 None:intergenic 50.0%
GCAGAGGTTCCAGAACGTTA+TGG - Chr3:64966657-64966676 MsG0380015081.01.T01:CDS 50.0%
GGTGGTTAACTGTAGGTGAC+TGG + Chr3:64969904-64969923 None:intergenic 50.0%
GTGAACCGTCCGATCAAGAT+CGG + Chr3:64970029-64970048 None:intergenic 50.0%
GTGGGAGAGACCAAACTCAT+TGG + Chr3:64968365-64968384 None:intergenic 50.0%
GTTCACCTCTTTCTGTCCAG+AGG + Chr3:64970571-64970590 None:intergenic 50.0%
GTTGACACTAGAGCAACAGC+AGG + Chr3:64969452-64969471 None:intergenic 50.0%
TAGTGTCAACCAACGGTCCA+TGG - Chr3:64969462-64969481 MsG0380015081.01.T01:CDS 50.0%
TCAGGAGGCCTGTTGAGTTT+CGG + Chr3:64966441-64966460 None:intergenic 50.0%
TCCCTACTTCCCTCTTTCAC+CGG - Chr3:64965374-64965393 MsG0380015081.01.T01:exon 50.0%
TCCGGTGAAAGAGGGAAGTA+GGG + Chr3:64965378-64965397 None:intergenic 50.0%
TGAGAAGCCTGCAAAATGGG+TGG - Chr3:64970500-64970519 MsG0380015081.01.T01:intron 50.0%
TGGGAAACTTTCTTGCCCTC+TGG - Chr3:64970552-64970571 MsG0380015081.01.T01:CDS 50.0%
TGTGCCTTACTTCCCTAACC+CGG - Chr3:64966009-64966028 MsG0380015081.01.T01:intron 50.0%
TGTTCAGTCCTGAGCATGAG+CGG - Chr3:64965777-64965796 MsG0380015081.01.T01:intron 50.0%
TTACGTGATCCATGGACCGT+TGG + Chr3:64969474-64969493 None:intergenic 50.0%
TTATTAGCGGCCGCCCTTAT+GGG - Chr3:64966768-64966787 MsG0380015081.01.T01:intron 50.0%
TTCAGTGGACGAGAAGCAAC+CGG + Chr3:64966031-64966050 None:intergenic 50.0%
TTGCCCTGGTTGTCTTGATG+CGG + Chr3:64966515-64966534 None:intergenic 50.0%
TTGGATCGCATCCCAGTCAT+TGG + Chr3:64969703-64969722 None:intergenic 50.0%
! GAGTTGGTCATTCGTGGGAT+TGG - Chr3:64969974-64969993 MsG0380015081.01.T01:intron 50.0%
! TCAGTCCCGATTTGCATGTC+TGG - Chr3:64970079-64970098 MsG0380015081.01.T01:intron 50.0%
!! ACTTGGATGCCATTGGCCTT+AGG + Chr3:64968943-64968962 None:intergenic 50.0%
!! AGTGGTGGTGGAGTTATTGG+TGG + Chr3:64965231-64965250 None:intergenic 50.0%
!! GCCATTGGCCTTAGGTACAT+TGG + Chr3:64968935-64968954 None:intergenic 50.0%
!! GCTAGTGGTGGTGGAGTTAT+TGG + Chr3:64965234-64965253 None:intergenic 50.0%
!! GGAAAGTGCCGAAACTCAAC+AGG - Chr3:64966430-64966449 MsG0380015081.01.T01:intron 50.0%
ACTCCACCACCACTAGCAGA+TGG - Chr3:64965237-64965256 MsG0380015081.01.T01:three_prime_UTR 55.0%
AGAGAGTGGGACAATTCGGG+GGG + Chr3:64968090-64968109 None:intergenic 55.0%
AGCAGGTCTCCGCAGTTTCT+TGG + Chr3:64969435-64969454 None:intergenic 55.0%
AGCTAGCACGATGCTTGGCA+TGG - Chr3:64968244-64968263 MsG0380015081.01.T01:intron 55.0%
AGGACGAAGTCCGGTGAAAG+AGG + Chr3:64965387-64965406 None:intergenic 55.0%
AGTGCCTTACGCTGATCAGG+AGG + Chr3:64966456-64966475 None:intergenic 55.0%
ATGGCCGCATCAAGACAACC+AGG - Chr3:64966508-64966527 MsG0380015081.01.T01:CDS 55.0%
CATTATCACCCCGCCTTGGT+AGG + Chr3:64966719-64966738 None:intergenic 55.0%
CCAATCTTCGCTCCTCCATC+AGG - Chr3:64965410-64965429 MsG0380015081.01.T01:CDS 55.0%
CCTGATGGAGGAGCGAAGAT+TGG + Chr3:64965413-64965432 None:intergenic 55.0%
CTAGCACGATGCTTGGCATG+GGG - Chr3:64968246-64968265 MsG0380015081.01.T01:intron 55.0%
CTTGCCCTCTGGACAGAAAG+AGG - Chr3:64970563-64970582 MsG0380015081.01.T01:CDS 55.0%
GACGAGAAGCAACCGGGTTA+GGG + Chr3:64966024-64966043 None:intergenic 55.0%
GAGAGAGTGGGACAATTCGG+GGG + Chr3:64968091-64968110 None:intergenic 55.0%
GATTGGGAGAGGACGAAGTC+CGG + Chr3:64965396-64965415 None:intergenic 55.0%
GCTAGCACGATGCTTGGCAT+GGG - Chr3:64968245-64968264 MsG0380015081.01.T01:intron 55.0%
GGACGAAGTCCGGTGAAAGA+GGG + Chr3:64965386-64965405 None:intergenic 55.0%
GGCAATTGGCGAAGAGAGAG+TGG + Chr3:64968104-64968123 None:intergenic 55.0%
GGGCAAGAGCCAGTGCAATT+AGG - Chr3:64966529-64966548 MsG0380015081.01.T01:CDS 55.0%
GGGTCTGGAAATTCGGAGTG+TGG + Chr3:64965345-64965364 None:intergenic 55.0%
GTCCGGTGAAAGAGGGAAGT+AGG + Chr3:64965379-64965398 None:intergenic 55.0%
TCAGTGGACGAGAAGCAACC+GGG + Chr3:64966030-64966049 None:intergenic 55.0%
TCCTGCACCTCTTGGATTCC+TGG - Chr3:64965948-64965967 MsG0380015081.01.T01:intron 55.0%
TGGCCGCATCAAGACAACCA+GGG - Chr3:64966509-64966528 MsG0380015081.01.T01:CDS 55.0%
TTCTGATGCTCCTGCCACCA+AGG - Chr3:64968457-64968476 MsG0380015081.01.T01:intron 55.0%
! ACCAGGAATCCAAGAGGTGC+AGG + Chr3:64965952-64965971 None:intergenic 55.0%
! CAGCGTAAGGCACTCATTCG+AGG - Chr3:64966462-64966481 MsG0380015081.01.T01:intron 55.0%
! CCCGATTTGCATGTCTGGCA+TGG - Chr3:64970084-64970103 MsG0380015081.01.T01:intron 55.0%
! GCAACCGGGTTAGGGAAGTA+AGG + Chr3:64966016-64966035 None:intergenic 55.0%
! GCGGGGTGATAATGCACCTA+TGG - Chr3:64966725-64966744 MsG0380015081.01.T01:intron 55.0%
!! AATTGCACTGGCTCTTGCCC+TGG + Chr3:64966529-64966548 None:intergenic 55.0%
!! GGTGGTGGAGTTATTGGTGG+TGG + Chr3:64965228-64965247 None:intergenic 55.0%
!! TAGGGTGCCACCCATTTTGC+AGG + Chr3:64970510-64970529 None:intergenic 55.0%
CAGGCCTCCTGATCAGCGTA+AGG - Chr3:64966449-64966468 MsG0380015081.01.T01:intron 60.0%
GGACGAGAAGCAACCGGGTT+AGG + Chr3:64966025-64966044 None:intergenic 60.0%
GGAGGAGCGAAGATTGGGAG+AGG + Chr3:64965407-64965426 None:intergenic 60.0%
GGTGCATTATCACCCCGCCT+TGG + Chr3:64966723-64966742 None:intergenic 60.0%
! CTCTGCCCCTGTGCGTGTTT+TGG - Chr3:64970378-64970397 MsG0380015081.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 64965140 64970837 64965140 ID=MsG0380015081.01;Name=MsG0380015081.01
Chr3 mRNA 64965140 64970837 64965140 ID=MsG0380015081.01.T01;Parent=MsG0380015081.01;Name=MsG0380015081.01.T01;_AED=0.47;_eAED=0.48;_QI=60|0.5|0.6|1|1|1|5|241|362
Chr3 exon 64965140 64965573 64965140 ID=MsG0380015081.01.T01:exon:9879;Parent=MsG0380015081.01.T01
Chr3 exon 64966488 64966720 64966488 ID=MsG0380015081.01.T01:exon:9878;Parent=MsG0380015081.01.T01
Chr3 exon 64968627 64968660 64968627 ID=MsG0380015081.01.T01:exon:9877;Parent=MsG0380015081.01.T01
Chr3 exon 64969214 64969610 64969214 ID=MsG0380015081.01.T01:exon:9876;Parent=MsG0380015081.01.T01
Chr3 exon 64970546 64970837 64970546 ID=MsG0380015081.01.T01:exon:9875;Parent=MsG0380015081.01.T01
Chr3 five_prime_UTR 64970778 64970837 64970778 ID=MsG0380015081.01.T01:five_prime_utr;Parent=MsG0380015081.01.T01
Chr3 CDS 64970546 64970777 64970546 ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3 CDS 64969214 64969610 64969214 ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3 CDS 64968627 64968660 64968627 ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3 CDS 64966488 64966720 64966488 ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3 CDS 64965381 64965573 64965381 ID=MsG0380015081.01.T01:cds;Parent=MsG0380015081.01.T01
Chr3 three_prime_UTR 64965140 64965380 64965140 ID=MsG0380015081.01.T01:three_prime_utr;Parent=MsG0380015081.01.T01
Gene Sequence

>MsG0380015081.01.T01

ATGGCGAACGTGGCTGTTATGGCTACCACCACCAATAACTCCACCACCACTAGCAGATGGAATATGTCTTCTCTTCGCTCTGCCTTACCTTCAATTCCTCCTACTTCCGTTTCTTCATTGCGCTTCACTCGTTCTTCTCCAACCACACTCCGAATTTCCAGACCCAAATCCAAATCCCTACTTCCCTCTTTCACCGGACTTCGTCCTCTCCCAATCTTCGCTCCTCCATCAGAATTTGATCACAGTTTCACCATTATTGACAATGGTGGTCGAGTCTATGCTATGAGACATGGAAGGAAAGTGCCGAAACTCAACAGGCCTCCTGATCAGCGTAAGGCACTCATTCGAGGCCTAACAACACAGCTCCTTAAATATGGCCGCATCAAGACAACCAGGGCAAGAGCCAGTGCAATTAGGAAGTATGTTGATAAAATGATCACTCTTGCAAAAGATGGTTCTCTACATAAAAGGAGACAAGCTCTTGGCTTCATCTATGAGAAGCAGATTGTTCATGCTTTATTTGCAGAGGTTCCAGAACGTTATGGCGAAAGAAATGGTGGTTATACAAGAATTATAAGAACCCTACCAAGGCGGGGTGATAATGCACCTATGGCATACATTGAACTTGTAGGATTGAGATTTTCATCTTCAAGGGTGAAACTGAGTGAGTTCACCAAGTATTATTTTATTGTTGCAAATGCAAAATTTATGCTGGATGAGGAGGAGCATTTCCAAGAACAACTATTTGAACGTCGTCGCTACTATGGAGAGCGTAATAAAGAACAGGATTACTGGCTTGTCATTGAGCCTAAATTCTTGGATAGTTTTCCTGACTTTACCAAGAAACTGCGGAGACCTGCTGTTGCTCTAGTGTCAACCAACGGTCCATGGATCACATTCATGAAATTAAGACTGGATCGAGTTTTATCAGGAAGTTTTGAAGCTGACAGCTTAGAAGAAGCATTAGCCTCCAATCCTACTAAGCTGGAATTTGAGAAGCCTGCAAAATGGGTGGCACCCTATCCTAAATATGAATCTGGATGGTGGGAAACTTTCTTGCCCTCTGGACAGAAAGAGGTGAACTCTTAA

Protein sequence

>MsG0380015081.01.T01

MANVAVMATTTNNSTTTSRWNMSSLRSALPSIPPTSVSSLRFTRSSPTTLRISRPKSKSLLPSFTGLRPLPIFAPPSEFDHSFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELVGLRFSSSRVKLSEFTKYYFIVANAKFMLDEEEHFQEQLFERRRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPWITFMKLRLDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQKEVNS*