AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015436.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015436.01.T01 MTR_3g070080 96.923 130 4 0 1 130 2 131 1.34e-86 265
MsG0380015436.01.T01 MTR_3g070080 64.615 130 44 1 1 128 177 306 5.88e-54 179
MsG0380015436.01.T01 MTR_3g070080 50.394 127 63 0 7 133 383 509 9.29e-43 149
MsG0380015436.01.T01 MTR_3g070080 96.923 130 4 0 1 130 65 194 3.86e-86 265
MsG0380015436.01.T01 MTR_3g070080 64.615 130 44 1 1 128 240 369 1.05e-53 179
MsG0380015436.01.T01 MTR_3g070080 50.394 127 63 0 7 133 446 572 1.25e-42 149
MsG0380015436.01.T01 MTR_3g110155 39.370 127 75 2 6 130 21 147 1.33e-24 96.3
MsG0380015436.01.T01 MTR_8g006585 39.370 127 75 2 6 130 21 147 1.33e-24 96.3
MsG0380015436.01.T01 MTR_8g006695 39.370 127 75 2 6 130 21 147 1.33e-24 96.3
MsG0380015436.01.T01 MTR_8g054100 38.710 124 75 1 6 128 21 144 2.85e-23 91.3
MsG0380015436.01.T01 MTR_2g435870 39.024 123 73 2 8 128 9 131 6.68e-23 91.3
MsG0380015436.01.T01 MTR_1g016370 38.710 124 75 1 6 128 21 144 3.27e-22 89.7
MsG0380015436.01.T01 MTR_2g018710 39.200 125 74 2 6 128 22 146 1.98e-21 87.8
MsG0380015436.01.T01 MTR_2g086350 39.200 125 74 2 6 128 22 146 2.00e-21 87.8
MsG0380015436.01.T01 MTR_1g080080 39.200 125 74 2 6 128 22 146 2.04e-21 87.8
MsG0380015436.01.T01 MTR_4g061370 37.903 124 76 1 6 128 1033 1156 1.28e-20 86.7
MsG0380015436.01.T01 MTR_4g043620 34.884 129 82 2 2 128 11 139 2.16e-20 84.7
MsG0380015436.01.T01 MTR_5g022570 33.594 128 85 0 6 133 19 146 3.12e-20 84.0
MsG0380015436.01.T01 MTR_2g021280 34.677 124 79 2 7 128 16 139 1.26e-18 80.5
MsG0380015436.01.T01 MTR_5g055390 35.714 112 60 2 18 128 36 136 8.53e-18 77.4
MsG0380015436.01.T01 MTR_8g069895 33.333 129 84 2 2 128 11 139 8.97e-18 77.4
MsG0380015436.01.T01 MTR_1g073440 31.452 124 83 2 7 128 16 139 1.97e-17 76.6
MsG0380015436.01.T01 MTR_1g055365 31.707 123 84 0 6 128 21 143 2.96e-16 74.3
MsG0380015436.01.T01 MTR_1g055365 27.778 126 91 0 2 127 188 313 6.97e-14 67.4
MsG0380015436.01.T01 MTR_5g054570 35.484 124 62 2 6 128 22 128 1.75e-15 71.2
MsG0380015436.01.T01 MTR_5g018260 29.600 125 87 1 5 128 14 138 4.33e-15 70.5
MsG0380015436.01.T01 MTR_8g468830 27.419 124 88 2 7 128 15 138 5.92e-14 67.4
MsG0380015436.01.T01 MTR_8g105430 27.344 128 91 2 2 128 36 162 1.10e-13 65.9
MsG0380015436.01.T01 MTR_4g092300 29.508 122 86 0 10 131 556 677 3.52e-13 65.5
MsG0380015436.01.T01 MTR_7g034425 42.647 68 38 1 8 74 96 163 4.11e-13 62.8
MsG0380015436.01.T01 MTR_0693s0050 39.423 104 57 2 16 118 23 121 5.50e-13 63.9
MsG0380015436.01.T01 MTR_8g085310 28.333 120 86 0 10 129 434 553 2.44e-12 63.2
MsG0380015436.01.T01 MTR_4g051480 29.508 122 86 0 10 131 574 695 2.54e-12 63.2
MsG0380015436.01.T01 MTR_3g023200 40.000 75 39 1 2 70 11 85 1.05e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015436.01.T01 AT5G05800 48.837 129 66 0 2 130 162 290 2.48e-41 142
MsG0380015436.01.T01 AT5G05800 41.935 124 72 0 7 130 4 127 2.37e-37 132
MsG0380015436.01.T01 AT5G05800 48.837 129 66 0 2 130 162 290 2.48e-41 142
MsG0380015436.01.T01 AT5G05800 41.935 124 72 0 7 130 4 127 2.37e-37 132
MsG0380015436.01.T01 AT5G05800 48.837 129 66 0 2 130 162 290 2.48e-41 142
MsG0380015436.01.T01 AT5G05800 41.935 124 72 0 7 130 4 127 2.37e-37 132
MsG0380015436.01.T01 AT5G05800 48.837 129 66 0 2 130 162 290 2.48e-41 142
MsG0380015436.01.T01 AT5G05800 41.935 124 72 0 7 130 4 127 2.37e-37 132
MsG0380015436.01.T01 AT5G05800 48.837 129 66 0 2 130 162 290 2.48e-41 142
MsG0380015436.01.T01 AT5G05800 41.935 124 72 0 7 130 4 127 2.37e-37 132
MsG0380015436.01.T01 AT3G11290 39.837 123 67 1 7 129 4 119 2.14e-32 119
MsG0380015436.01.T01 AT3G11290 41.860 129 75 0 2 130 160 288 3.33e-31 115
MsG0380015436.01.T01 AT3G11290 39.837 123 67 1 7 129 4 119 2.14e-32 119
MsG0380015436.01.T01 AT3G11290 41.860 129 75 0 2 130 160 288 3.33e-31 115
MsG0380015436.01.T01 AT3G11310 42.748 131 70 1 7 132 173 303 4.00e-27 105
MsG0380015436.01.T01 AT3G11310 41.732 127 64 3 7 130 5 124 1.60e-26 103
MsG0380015436.01.T01 AT2G19220 37.600 125 70 1 6 130 3 119 1.76e-25 100
MsG0380015436.01.T01 AT2G19220 41.129 124 70 1 10 130 165 288 3.95e-24 96.3
MsG0380015436.01.T01 AT2G24960 26.772 127 93 0 6 132 168 294 1.58e-13 66.6
MsG0380015436.01.T01 AT2G24960 26.190 126 87 2 6 128 11 133 6.07e-12 62.0
MsG0380015436.01.T01 AT2G24960 26.772 127 93 0 6 132 168 294 1.64e-13 66.6
MsG0380015436.01.T01 AT2G24960 29.412 119 84 0 10 128 327 445 2.68e-13 65.9
MsG0380015436.01.T01 AT2G24960 26.190 126 87 2 6 128 11 133 6.05e-12 62.0
MsG0380015436.01.T01 AT4G02210 26.190 126 93 0 2 127 178 303 1.71e-13 66.2
MsG0380015436.01.T01 AT4G02210 30.400 125 86 1 10 133 14 138 2.43e-11 60.1
MsG0380015436.01.T01 AT4G02210 26.190 126 93 0 2 127 178 303 1.71e-13 66.2
MsG0380015436.01.T01 AT4G02210 30.400 125 86 1 10 133 14 138 2.43e-11 60.1

Find 37 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTGAAACTGTGCAGCTTC+TGG 0.143847 3:-70216456 None:intergenic
TATCCAATTCTTCTTTAAAC+TGG 0.295444 3:-70216488 None:intergenic
ATAACTCAACAAAGATCTTA+TGG 0.304959 3:-70216087 None:intergenic
CCAGACCTTCCATAGTTTCC+TGG 0.306465 3:-70216248 None:intergenic
AATCCAGTTTAAAGAAGAAT+TGG 0.323192 3:+70216485 MsG0380015436.01.T01:CDS
ACTGAAACTGTGCAGCTTCT+GGG 0.344792 3:-70216455 None:intergenic
AGAGAGAATACCTGAGCTTC+AGG 0.352857 3:-70214882 None:intergenic
CCAGGAAACTATGGAAGGTC+TGG 0.387089 3:+70216248 MsG0380015436.01.T01:CDS
ATGATTCCACCAGGAAACTA+TGG 0.392758 3:+70216239 MsG0380015436.01.T01:CDS
CTTCACCTTCAAAAGCCAAT+TGG 0.404628 3:+70216053 MsG0380015436.01.T01:CDS
TTCTTTAAACTGGATTTCCT+TGG 0.416445 3:-70216478 None:intergenic
GTGTTGAAGGCGAATGAGCC+TGG 0.421145 3:+70216121 MsG0380015436.01.T01:CDS
AGACTGGTGTGATTATATAA+AGG 0.428160 3:+70216339 MsG0380015436.01.T01:CDS
CTCGTGATAGTGGCATGAAA+TGG 0.436473 3:+70216281 MsG0380015436.01.T01:CDS
AATGTTCTTCCAAGCTTCCT+TGG 0.436883 3:-70216155 None:intergenic
TCTCTCTCGTGATTTCTCAC+TGG 0.455795 3:-70214768 None:intergenic
AACCATTGTTCCTGAAGCTC+AGG 0.464801 3:+70214872 MsG0380015436.01.T01:five_prime_UTR
GAAGCTTGGAAGAACATTGT+TGG 0.471493 3:+70216160 MsG0380015436.01.T01:CDS
ATGGAACGCAGGGTTCCAAT+TGG 0.490953 3:-70216068 None:intergenic
ATGTGTCAAAGAAGTGTTGA+AGG 0.508600 3:+70216108 MsG0380015436.01.T01:CDS
TGAGGCTTACCAAGGAAGCT+TGG 0.512578 3:+70216146 MsG0380015436.01.T01:CDS
GATAAGTTGACTCGTGATAG+TGG 0.515435 3:+70216271 MsG0380015436.01.T01:CDS
CAGGAAACTATGGAAGGTCT+GGG 0.536787 3:+70216249 MsG0380015436.01.T01:CDS
GAATTGGATATCATCTTTGA+CGG 0.546121 3:+70216501 MsG0380015436.01.T01:CDS
TCGTGATAGTGGCATGAAAT+GGG 0.549220 3:+70216282 MsG0380015436.01.T01:CDS
AGCTGCACAGTTTCAGTCCA+AGG 0.549671 3:+70216461 MsG0380015436.01.T01:CDS
TTGGTGCTTCTGAAGAAGAC+TGG 0.551142 3:+70216323 MsG0380015436.01.T01:CDS
AGGCGAATGAGCCTGGGATG+AGG 0.555161 3:+70216128 MsG0380015436.01.T01:CDS
TCCTTGGTAAGCCTCATCCC+AGG 0.563658 3:-70216139 None:intergenic
CAAAGATCTTATGGAACGCA+GGG 0.583477 3:-70216078 None:intergenic
ACAAAGATCTTATGGAACGC+AGG 0.590554 3:-70216079 None:intergenic
GACCTTCCATAGTTTCCTGG+TGG 0.610971 3:-70216245 None:intergenic
AGAATCATTATGATTCCACC+AGG 0.612682 3:+70216230 MsG0380015436.01.T01:CDS
TACCTGAGCTTCAGGAACAA+TGG 0.620384 3:-70214874 None:intergenic
TGTTGAAGGCGAATGAGCCT+GGG 0.621575 3:+70216122 MsG0380015436.01.T01:CDS
GCCTGGGATGAGGCTTACCA+AGG 0.655223 3:+70216138 MsG0380015436.01.T01:CDS
TTCCACCAGGAAACTATGGA+AGG 0.664111 3:+70216243 MsG0380015436.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTTATTTAATAAAAA+GGG + Chr3:70215145-70215164 MsG0380015436.01.T01:intron 0.0%
!! TTATTATTTATTTAATAAAA+AGG + Chr3:70215144-70215163 MsG0380015436.01.T01:intron 0.0%
!!! TAATAAAAAGGGAATTTTTT+AGG + Chr3:70215156-70215175 MsG0380015436.01.T01:intron 15.0%
!! AAACTAAAAAACACTAATTG+CGG + Chr3:70215424-70215443 MsG0380015436.01.T01:intron 20.0%
!! TCTAATTGAAACTTGTATAT+TGG + Chr3:70215975-70215994 MsG0380015436.01.T01:intron 20.0%
!!! AAATTTTGGGGAAAAAAAAA+TGG - Chr3:70214929-70214948 None:intergenic 20.0%
!!! GTTTTGTAAGATTTTTTGTT+TGG + Chr3:70215271-70215290 MsG0380015436.01.T01:intron 20.0%
!!! TAGTGTAAGTGATTTATTTT+TGG + Chr3:70215199-70215218 MsG0380015436.01.T01:intron 20.0%
!!! TTTTCCTGCAAAAATTAAAA+AGG - Chr3:70216435-70216454 None:intergenic 20.0%
! AACTAAAAAACACTAATTGC+GGG + Chr3:70215425-70215444 MsG0380015436.01.T01:intron 25.0%
! AATCCAGTTTAAAGAAGAAT+TGG + Chr3:70216485-70216504 MsG0380015436.01.T01:CDS 25.0%
! AATTCAAACTTAAACGAAAC+AGG - Chr3:70215123-70215142 None:intergenic 25.0%
! AGGCTTCATAATTATTTATC+TGG - Chr3:70216415-70216434 None:intergenic 25.0%
! AGGGATACAAATGAAATATT+TGG + Chr3:70215931-70215950 MsG0380015436.01.T01:intron 25.0%
! ATAACTCAACAAAGATCTTA+TGG - Chr3:70216090-70216109 None:intergenic 25.0%
! ATACTTGATATTGCATTGAA+TGG + Chr3:70215580-70215599 MsG0380015436.01.T01:intron 25.0%
! ATCAAAAAACTTTAATGCTG+TGG + Chr3:70215816-70215835 MsG0380015436.01.T01:intron 25.0%
! ATTCAAACTTAAACGAAACA+GGG - Chr3:70215122-70215141 None:intergenic 25.0%
! GTCATAATTCATAAAACCTA+AGG - Chr3:70215100-70215119 None:intergenic 25.0%
! TATCCAATTCTTCTTTAAAC+TGG - Chr3:70216491-70216510 None:intergenic 25.0%
! TCATAAAACCTAAGGTTTAA+AGG - Chr3:70215092-70215111 None:intergenic 25.0%
! TCTAAACAAAAGAATTGTAC+AGG + Chr3:70215397-70215416 MsG0380015436.01.T01:intron 25.0%
! TTATGATAGTAATCTAGAGA+AGG + Chr3:70215506-70215525 MsG0380015436.01.T01:intron 25.0%
!! AACAACAGTGTAGAAAATTT+TGG - Chr3:70214943-70214962 None:intergenic 25.0%
!! ACAACAGTGTAGAAAATTTT+GGG - Chr3:70214942-70214961 None:intergenic 25.0%
!! ACTGTAATCTCTTTAATTTC+TGG + Chr3:70215041-70215060 MsG0380015436.01.T01:intron 25.0%
!! ATTAGATCCCATTTTACAAA+AGG - Chr3:70215961-70215980 None:intergenic 25.0%
!! GTGTGATTATATAAAGGTAT+TGG + Chr3:70216345-70216364 MsG0380015436.01.T01:intron 25.0%
!! TTTCTCAAATCATCTTGTTT+GGG + Chr3:70215897-70215916 MsG0380015436.01.T01:intron 25.0%
!! TTTTCTCAAATCATCTTGTT+TGG + Chr3:70215896-70215915 MsG0380015436.01.T01:intron 25.0%
!!! AAGTAACCGTTTTTAATTTG+CGG + Chr3:70215366-70215385 MsG0380015436.01.T01:intron 25.0%
!!! TAACAACTATGGTTTTAAAG+AGG - Chr3:70215861-70215880 None:intergenic 25.0%
AAAGAGATTACAGTGATAGA+GGG - Chr3:70215035-70215054 None:intergenic 30.0%
AATCTAGAGAAGGATAGTAT+TGG + Chr3:70215516-70215535 MsG0380015436.01.T01:intron 30.0%
ACTAAAAAACACTAATTGCG+GGG + Chr3:70215426-70215445 MsG0380015436.01.T01:intron 30.0%
AGACTGGTGTGATTATATAA+AGG + Chr3:70216339-70216358 MsG0380015436.01.T01:CDS 30.0%
CATCAAAAACTTTAATGTCG+TGG + Chr3:70215653-70215672 MsG0380015436.01.T01:intron 30.0%
GAATTGGATATCATCTTTGA+CGG + Chr3:70216501-70216520 MsG0380015436.01.T01:CDS 30.0%
GGGGAAAAAAAAATGGAAAA+GGG - Chr3:70214922-70214941 None:intergenic 30.0%
TAAAGAGATTACAGTGATAG+AGG - Chr3:70215036-70215055 None:intergenic 30.0%
TGGGGAAAAAAAAATGGAAA+AGG - Chr3:70214923-70214942 None:intergenic 30.0%
TTATTATTGTTCGTCCAAGA+TGG + Chr3:70216371-70216390 MsG0380015436.01.T01:intron 30.0%
TTCTTTAAACTGGATTTCCT+TGG - Chr3:70216481-70216500 None:intergenic 30.0%
! ATTATCTTGTTTGCATTGAC+TGG + Chr3:70215742-70215761 MsG0380015436.01.T01:intron 30.0%
! CAACAGTGTAGAAAATTTTG+GGG - Chr3:70214941-70214960 None:intergenic 30.0%
! TCATGTGGTGTGATTTTATT+GGG + Chr3:70215320-70215339 MsG0380015436.01.T01:intron 30.0%
! TTCTCAAATCATCTTGTTTG+GGG + Chr3:70215898-70215917 MsG0380015436.01.T01:intron 30.0%
! TTTAGTCCTGTTAGCTTATT+GGG + Chr3:70215297-70215316 MsG0380015436.01.T01:intron 30.0%
!! ATTGGTTTGCATGAAATGTT+TGG + Chr3:70215993-70216012 MsG0380015436.01.T01:intron 30.0%
!! TTTTAGTCCTGTTAGCTTAT+TGG + Chr3:70215296-70215315 MsG0380015436.01.T01:intron 30.0%
!!! AAAGGGAATTTTTTAGGTGA+TGG + Chr3:70215162-70215181 MsG0380015436.01.T01:intron 30.0%
!!! AACTATGGTTTTAAAGAGGT+TGG - Chr3:70215857-70215876 None:intergenic 30.0%
!!! AAGGGAATTTTTTAGGTGAT+GGG + Chr3:70215163-70215182 MsG0380015436.01.T01:intron 30.0%
!!! AGTAACCGTTTTTAATTTGC+GGG + Chr3:70215367-70215386 MsG0380015436.01.T01:intron 30.0%
!!! GAAGCCTTTTTAATTTTTGC+AGG + Chr3:70216428-70216447 MsG0380015436.01.T01:intron 30.0%
AATCAAGCACGTAACAACTA+TGG - Chr3:70215872-70215891 None:intergenic 35.0%
AGAATCATTATGATTCCACC+AGG + Chr3:70216230-70216249 MsG0380015436.01.T01:CDS 35.0%
AGTCTACTCAATCTCAATCA+TGG + Chr3:70215776-70215795 MsG0380015436.01.T01:intron 35.0%
ATGAAATGGGATCCAAAAAC+TGG + Chr3:70216295-70216314 MsG0380015436.01.T01:CDS 35.0%
GATCCAAAAACTGGAAAGTT+TGG + Chr3:70216304-70216323 MsG0380015436.01.T01:CDS 35.0%
! CACTCCAGTCTTTTCATAAA+AGG - Chr3:70216188-70216207 None:intergenic 35.0%
! CTTTTATGAAAAGACTGGAG+TGG + Chr3:70216186-70216205 MsG0380015436.01.T01:CDS 35.0%
! GGATCCTTTTATGAAAAGAC+TGG + Chr3:70216181-70216200 MsG0380015436.01.T01:CDS 35.0%
! GTCATGTGGTGTGATTTTAT+TGG + Chr3:70215319-70215338 MsG0380015436.01.T01:intron 35.0%
! TGGCAGACCTTTTGTAAAAT+GGG + Chr3:70215951-70215970 MsG0380015436.01.T01:intron 35.0%
! TTGGCAGACCTTTTGTAAAA+TGG + Chr3:70215950-70215969 MsG0380015436.01.T01:intron 35.0%
!! ATGTGTCAAAGAAGTGTTGA+AGG + Chr3:70216108-70216127 MsG0380015436.01.T01:CDS 35.0%
!! GATAGTATTGGTTGCTATCA+AGG + Chr3:70215528-70215547 MsG0380015436.01.T01:intron 35.0%
!!! GTAACCGTTTTTAATTTGCG+GGG + Chr3:70215368-70215387 MsG0380015436.01.T01:intron 35.0%
!!! TATGGTTTTAAAGAGGTTGG+CGG - Chr3:70215854-70215873 None:intergenic 35.0%
AATGTTCTTCCAAGCTTCCT+TGG - Chr3:70216158-70216177 None:intergenic 40.0%
ACAAAGATCTTATGGAACGC+AGG - Chr3:70216082-70216101 None:intergenic 40.0%
ACATGACCCAATAAGCTAAC+AGG - Chr3:70215306-70215325 None:intergenic 40.0%
ACGAAAATGTCCTACCATCT+TGG - Chr3:70216388-70216407 None:intergenic 40.0%
ATGATTCCACCAGGAAACTA+TGG + Chr3:70216239-70216258 MsG0380015436.01.T01:CDS 40.0%
CAAAGATCTTATGGAACGCA+GGG - Chr3:70216081-70216100 None:intergenic 40.0%
CAGTCCCCGCAAATTAAAAA+CGG - Chr3:70215375-70215394 None:intergenic 40.0%
CTTCACCTTCAAAAGCCAAT+TGG + Chr3:70216053-70216072 MsG0380015436.01.T01:CDS 40.0%
GAAGCTTGGAAGAACATTGT+TGG + Chr3:70216160-70216179 MsG0380015436.01.T01:CDS 40.0%
GTTTGCATGAAATGTTTGGC+AGG + Chr3:70215997-70216016 MsG0380015436.01.T01:intron 40.0%
TATTGTTCGTCCAAGATGGT+AGG + Chr3:70216375-70216394 MsG0380015436.01.T01:intron 40.0%
TGTGCATGCCTTTAAACCTT+AGG + Chr3:70215081-70215100 MsG0380015436.01.T01:intron 40.0%
! AAGATGGTAGGACATTTTCG+TGG + Chr3:70216387-70216406 MsG0380015436.01.T01:intron 40.0%
! AAGGTTTAAAGGCATGCACA+TGG - Chr3:70215081-70215100 None:intergenic 40.0%
! AGGACATTTTTCATCGCACA+AGG + Chr3:70216017-70216036 MsG0380015436.01.T01:intron 40.0%
! CAAATCATCTTGTTTGGGGT+GGG + Chr3:70215902-70215921 MsG0380015436.01.T01:intron 40.0%
! GCACCAAACTTTCCAGTTTT+TGG - Chr3:70216310-70216329 None:intergenic 40.0%
! TCAAATCATCTTGTTTGGGG+TGG + Chr3:70215901-70215920 MsG0380015436.01.T01:intron 40.0%
! TGTTAGCTTATTGGGTCATG+TGG + Chr3:70215305-70215324 MsG0380015436.01.T01:intron 40.0%
! TTTTTCATCGCACAAGGTCA+AGG + Chr3:70216023-70216042 MsG0380015436.01.T01:five_prime_UTR 40.0%
!! GATAAGTTGACTCGTGATAG+TGG + Chr3:70216271-70216290 MsG0380015436.01.T01:CDS 40.0%
!! TCGTGATAGTGGCATGAAAT+GGG + Chr3:70216282-70216301 MsG0380015436.01.T01:CDS 40.0%
!!! TAGCAGCTAGGGTTTTAAAG+AGG - Chr3:70215698-70215717 None:intergenic 40.0%
!!! TAGGGTTTTAAAGAGGTTCG+CGG - Chr3:70215691-70215710 None:intergenic 40.0%
AACCATTGTTCCTGAAGCTC+AGG + Chr3:70214872-70214891 MsG0380015436.01.T01:five_prime_UTR 45.0%
AATCAAGCTCGTAGCAGCTA+GGG - Chr3:70215709-70215728 None:intergenic 45.0%
ACTGAAACTGTGCAGCTTCT+GGG - Chr3:70216458-70216477 None:intergenic 45.0%
AGAGAGAATACCTGAGCTTC+AGG - Chr3:70214885-70214904 None:intergenic 45.0%
AGTCGACGAGATCTCAATCA+TGG + Chr3:70215614-70215633 MsG0380015436.01.T01:intron 45.0%
CAGGAAACTATGGAAGGTCT+GGG + Chr3:70216249-70216268 MsG0380015436.01.T01:CDS 45.0%
TACCTGAGCTTCAGGAACAA+TGG - Chr3:70214877-70214896 None:intergenic 45.0%
TCTCTCTCGTGATTTCTCAC+TGG - Chr3:70214771-70214790 None:intergenic 45.0%
TTCCACCAGGAAACTATGGA+AGG + Chr3:70216243-70216262 MsG0380015436.01.T01:CDS 45.0%
! TTGGTGCTTCTGAAGAAGAC+TGG + Chr3:70216323-70216342 MsG0380015436.01.T01:CDS 45.0%
!! CTCGTGATAGTGGCATGAAA+TGG + Chr3:70216281-70216300 MsG0380015436.01.T01:CDS 45.0%
!!! GGGTTCCAATTGGCTTTTGA+AGG - Chr3:70216061-70216080 None:intergenic 45.0%
AGCTGCACAGTTTCAGTCCA+AGG + Chr3:70216461-70216480 MsG0380015436.01.T01:CDS 50.0%
ATGGAACGCAGGGTTCCAAT+TGG - Chr3:70216071-70216090 None:intergenic 50.0%
CAATCAAGCTCGTAGCAGCT+AGG - Chr3:70215710-70215729 None:intergenic 50.0%
CCAGACCTTCCATAGTTTCC+TGG - Chr3:70216251-70216270 None:intergenic 50.0%
CCAGGAAACTATGGAAGGTC+TGG + Chr3:70216248-70216267 MsG0380015436.01.T01:CDS 50.0%
GACCTTCCATAGTTTCCTGG+TGG - Chr3:70216248-70216267 None:intergenic 50.0%
GACTGAAACTGTGCAGCTTC+TGG - Chr3:70216459-70216478 None:intergenic 50.0%
TAATGCTGTGGCCCAGATTG+TGG + Chr3:70215828-70215847 MsG0380015436.01.T01:intron 50.0%
TAATGTCGTGGCCCAGATTG+TGG + Chr3:70215665-70215684 MsG0380015436.01.T01:intron 50.0%
TGAGGCTTACCAAGGAAGCT+TGG + Chr3:70216146-70216165 MsG0380015436.01.T01:CDS 50.0%
TGTTGAAGGCGAATGAGCCT+GGG + Chr3:70216122-70216141 MsG0380015436.01.T01:CDS 50.0%
TTGACGGAAATGCCTCCTGA+GGG + Chr3:70216517-70216536 MsG0380015436.01.T01:CDS 50.0%
TTGGGTCACGAATGACGTCA+AGG + Chr3:70215338-70215357 MsG0380015436.01.T01:intron 50.0%
TTTGACGGAAATGCCTCCTG+AGG + Chr3:70216516-70216535 MsG0380015436.01.T01:CDS 50.0%
! CATCTTGTTTGGGGTGGGTT+TGG + Chr3:70215907-70215926 MsG0380015436.01.T01:intron 50.0%
! TGTTTGGGGTGGGTTTGGTA+GGG + Chr3:70215912-70215931 MsG0380015436.01.T01:intron 50.0%
! TTGTTTGGGGTGGGTTTGGT+AGG + Chr3:70215911-70215930 MsG0380015436.01.T01:intron 50.0%
GTGTTGAAGGCGAATGAGCC+TGG + Chr3:70216121-70216140 MsG0380015436.01.T01:CDS 55.0%
TCCTTGGTAAGCCTCATCCC+AGG - Chr3:70216142-70216161 None:intergenic 55.0%
AGAGGTTCGCGGCCACAATC+TGG - Chr3:70215680-70215699 None:intergenic 60.0%
AGAGGTTGGCGGCCACAATC+TGG - Chr3:70215843-70215862 None:intergenic 60.0%
AGGCGAATGAGCCTGGGATG+AGG + Chr3:70216128-70216147 MsG0380015436.01.T01:CDS 60.0%
GAGGTTCGCGGCCACAATCT+GGG - Chr3:70215679-70215698 None:intergenic 60.0%
GAGGTTGGCGGCCACAATCT+GGG - Chr3:70215842-70215861 None:intergenic 60.0%
GCCTGGGATGAGGCTTACCA+AGG + Chr3:70216138-70216157 MsG0380015436.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 70214755 70216536 70214755 ID=MsG0380015436.01;Name=MsG0380015436.01
Chr3 mRNA 70214755 70216536 70214755 ID=MsG0380015436.01.T01;Parent=MsG0380015436.01;Name=MsG0380015436.01.T01;_AED=0.49;_eAED=0.49;_QI=166|1|1|1|0.75|0.6|5|0|133
Chr3 exon 70214755 70214893 70214755 ID=MsG0380015436.01.T01:exon:23596;Parent=MsG0380015436.01.T01
Chr3 exon 70216019 70216360 70216019 ID=MsG0380015436.01.T01:exon:23597;Parent=MsG0380015436.01.T01
Chr3 exon 70216450 70216536 70216450 ID=MsG0380015436.01.T01:exon:23598;Parent=MsG0380015436.01.T01
Chr3 five_prime_UTR 70214755 70214893 70214755 ID=MsG0380015436.01.T01:five_prime_utr;Parent=MsG0380015436.01.T01
Chr3 five_prime_UTR 70216019 70216045 70216019 ID=MsG0380015436.01.T01:five_prime_utr;Parent=MsG0380015436.01.T01
Chr3 CDS 70216046 70216360 70216046 ID=MsG0380015436.01.T01:cds;Parent=MsG0380015436.01.T01
Chr3 CDS 70216450 70216536 70216450 ID=MsG0380015436.01.T01:cds;Parent=MsG0380015436.01.T01
Gene Sequence

>MsG0380015436.01.T01

ATGTCTACTTCACCTTCAAAAGCCAATTGGAACCCTGCGTTCCATAAGATCTTTGTTGAGTTATGTGTCAAAGAAGTGTTGAAGGCGAATGAGCCTGGGATGAGGCTTACCAAGGAAGCTTGGAAGAACATTGTTGGATCCTTTTATGAAAAGACTGGAGTGGAGTACGACAAAAAACAATTCAAGAATCATTATGATTCCACCAGGAAACTATGGAAGGTCTGGGATAAGTTGACTCGTGATAGTGGCATGAAATGGGATCCAAAAACTGGAAAGTTTGGTGCTTCTGAAGAAGACTGGTGTGATTATATAAAGGAAAACCCAGAAGCTGCACAGTTTCAGTCCAAGGAAATCCAGTTTAAAGAAGAATTGGATATCATCTTTGACGGAAATGCCTCCTGA

Protein sequence

>MsG0380015436.01.T01

MSTSPSKANWNPAFHKIFVELCVKEVLKANEPGMRLTKEAWKNIVGSFYEKTGVEYDKKQFKNHYDSTRKLWKVWDKLTRDSGMKWDPKTGKFGASEEDWCDYIKENPEAAQFQSKEIQFKEELDIIFDGNAS*