AlfalfaGEDB | MsG0380015436.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015436.01

KEGG: -
GO: -
PFAM: PF12776

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015436.01.T01	XP_013460746.1	96.923	130	4	0	1	130	2	131	1.11E-82	265
MsG0380015436.01.T01	XP_013460746.1	64.615	130	44	1	1	128	177	306	4.86E-50	179
MsG0380015436.01.T01	XP_013460746.1	50.394	127	63	0	7	133	383	509	7.67E-39	149

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015436.01.T01	Q9FFJ8	48.837	129	66	0	2	130	162	290	2.43E-40	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015436.01.T01	A0A072V9C2	96.923	130	4	0	1	130	2	131	5.28e-83	265

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048058.01	MsG0380015436.01	0.845018	5.273767e-59	8.671591e-56
MsG0080048178.01	MsG0380015436.01	0.825188	5.370670e-54	4.860920e-51
MsG0080048383.01	MsG0380015436.01	0.812520	4.067615e-51	2.591957e-48
MsG0080048402.01	MsG0380015436.01	0.803959	2.717136e-49	1.383903e-46
MsG0080048461.01	MsG0380015436.01	0.827146	1.838138e-54	1.759412e-51
MsG0080048602.01	MsG0380015436.01	0.854137	1.503832e-61	3.326078e-58
MsG0080048672.01	MsG0380015436.01	0.808295	3.322417e-50	1.892599e-47
MsG0080048765.01	MsG0380015436.01	0.845478	3.960760e-59	6.609166e-56
MsG0080048769.01	MsG0380015436.01	0.807760	4.317478e-50	2.425004e-47
MsG0080048785.01	MsG0380015436.01	0.810553	1.088707e-50	6.582581e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015436.01.T01	MTR_3g070080	96.923	130	4	0	1	130	2	131	1.34e-86	265
MsG0380015436.01.T01	MTR_3g070080	64.615	130	44	1	1	128	177	306	5.88e-54	179
MsG0380015436.01.T01	MTR_3g070080	50.394	127	63	0	7	133	383	509	9.29e-43	149
MsG0380015436.01.T01	MTR_3g070080	96.923	130	4	0	1	130	65	194	3.86e-86	265
MsG0380015436.01.T01	MTR_3g070080	64.615	130	44	1	1	128	240	369	1.05e-53	179
MsG0380015436.01.T01	MTR_3g070080	50.394	127	63	0	7	133	446	572	1.25e-42	149
MsG0380015436.01.T01	MTR_3g110155	39.370	127	75	2	6	130	21	147	1.33e-24	96.3
MsG0380015436.01.T01	MTR_8g006585	39.370	127	75	2	6	130	21	147	1.33e-24	96.3
MsG0380015436.01.T01	MTR_8g006695	39.370	127	75	2	6	130	21	147	1.33e-24	96.3
MsG0380015436.01.T01	MTR_8g054100	38.710	124	75	1	6	128	21	144	2.85e-23	91.3

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015436.01.T01	AT5G05800	48.837	129	66	2	130	162	290	2.48e-41	142
MsG0380015436.01.T01	AT5G05800	41.935	124	72	7	130	4	127	2.37e-37	132
MsG0380015436.01.T01	AT5G05800	48.837	129	66	2	130	162	290	2.48e-41	142
MsG0380015436.01.T01	AT5G05800	41.935	124	72	7	130	4	127	2.37e-37	132
MsG0380015436.01.T01	AT5G05800	48.837	129	66	2	130	162	290	2.48e-41	142
MsG0380015436.01.T01	AT5G05800	41.935	124	72	7	130	4	127	2.37e-37	132
MsG0380015436.01.T01	AT5G05800	48.837	129	66	2	130	162	290	2.48e-41	142
MsG0380015436.01.T01	AT5G05800	41.935	124	72	7	130	4	127	2.37e-37	132
MsG0380015436.01.T01	AT5G05800	48.837	129	66	2	130	162	290	2.48e-41	142
MsG0380015436.01.T01	AT5G05800	41.935	124	72	7	130	4	127	2.37e-37	132

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Find 37 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATTGTTCCTGAAGCTC+AGG	0.464801	3:+70214872	MsG0380015436.01.T01:five_prime_UTR
AATCCAGTTTAAAGAAGAAT+TGG	0.323192	3:+70216485	MsG0380015436.01.T01:CDS
AATGTTCTTCCAAGCTTCCT+TGG	0.436883	3:-70216155	None:intergenic
ACAAAGATCTTATGGAACGC+AGG	0.590554	3:-70216079	None:intergenic
ACTGAAACTGTGCAGCTTCT+GGG	0.344792	3:-70216455	None:intergenic
AGAATCATTATGATTCCACC+AGG	0.612682	3:+70216230	MsG0380015436.01.T01:CDS
AGACTGGTGTGATTATATAA+AGG	0.428160	3:+70216339	MsG0380015436.01.T01:CDS
AGAGAGAATACCTGAGCTTC+AGG	0.352857	3:-70214882	None:intergenic
AGCTGCACAGTTTCAGTCCA+AGG	0.549671	3:+70216461	MsG0380015436.01.T01:CDS
AGGCGAATGAGCCTGGGATG+AGG	0.555161	3:+70216128	MsG0380015436.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGATTACAGTGATAGA+GGG	-	Chr3:70215035-70215054	None:intergenic	30.0%
AATCTAGAGAAGGATAGTAT+TGG	+	Chr3:70215516-70215535	MsG0380015436.01.T01:intron	30.0%
ACTAAAAAACACTAATTGCG+GGG	+	Chr3:70215426-70215445	MsG0380015436.01.T01:intron	30.0%
AGACTGGTGTGATTATATAA+AGG	+	Chr3:70216339-70216358	MsG0380015436.01.T01:CDS	30.0%
CATCAAAAACTTTAATGTCG+TGG	+	Chr3:70215653-70215672	MsG0380015436.01.T01:intron	30.0%
GAATTGGATATCATCTTTGA+CGG	+	Chr3:70216501-70216520	MsG0380015436.01.T01:CDS	30.0%
GGGGAAAAAAAAATGGAAAA+GGG	-	Chr3:70214922-70214941	None:intergenic	30.0%
TAAAGAGATTACAGTGATAG+AGG	-	Chr3:70215036-70215055	None:intergenic	30.0%
TGGGGAAAAAAAAATGGAAA+AGG	-	Chr3:70214923-70214942	None:intergenic	30.0%
TTATTATTGTTCGTCCAAGA+TGG	+	Chr3:70216371-70216390	MsG0380015436.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	70214755	70216536	70214755	ID=MsG0380015436.01;Name=MsG0380015436.01
Chr3	mRNA	70214755	70216536	70214755	ID=MsG0380015436.01.T01;Parent=MsG0380015436.01;Name=MsG0380015436.01.T01;_AED=0.49;_eAED=0.49;_QI=166\|1\|1\|1\|0.75\|0.6\|5\|0\|133
Chr3	exon	70214755	70214893	70214755	ID=MsG0380015436.01.T01:exon:23596;Parent=MsG0380015436.01.T01
Chr3	exon	70216019	70216360	70216019	ID=MsG0380015436.01.T01:exon:23597;Parent=MsG0380015436.01.T01
Chr3	exon	70216450	70216536	70216450	ID=MsG0380015436.01.T01:exon:23598;Parent=MsG0380015436.01.T01
Chr3	five_prime_UTR	70214755	70214893	70214755	ID=MsG0380015436.01.T01:five_prime_utr;Parent=MsG0380015436.01.T01
Chr3	five_prime_UTR	70216019	70216045	70216019	ID=MsG0380015436.01.T01:five_prime_utr;Parent=MsG0380015436.01.T01
Chr3	CDS	70216046	70216360	70216046	ID=MsG0380015436.01.T01:cds;Parent=MsG0380015436.01.T01
Chr3	CDS	70216450	70216536	70216450	ID=MsG0380015436.01.T01:cds;Parent=MsG0380015436.01.T01

Gene Sequence

>MsG0380015436.01.T01

ATGTCTACTTCACCTTCAAAAGCCAATTGGAACCCTGCGTTCCATAAGATCTTTGTTGAGTTATGTGTCAAAGAAGTGTTGAAGGCGAATGAGCCTGGGATGAGGCTTACCAAGGAAGCTTGGAAGAACATTGTTGGATCCTTTTATGAAAAGACTGGAGTGGAGTACGACAAAAAACAATTCAAGAATCATTATGATTCCACCAGGAAACTATGGAAGGTCTGGGATAAGTTGACTCGTGATAGTGGCATGAAATGGGATCCAAAAACTGGAAAGTTTGGTGCTTCTGAAGAAGACTGGTGTGATTATATAAAGGAAAACCCAGAAGCTGCACAGTTTCAGTCCAAGGAAATCCAGTTTAAAGAAGAATTGGATATCATCTTTGACGGAAATGCCTCCTGA

Protein sequence

>MsG0380015436.01.T01

MSTSPSKANWNPAFHKIFVELCVKEVLKANEPGMRLTKEAWKNIVGSFYEKTGVEYDKKQFKNHYDSTRKLWKVWDKLTRDSGMKWDPKTGKFGASEEDWCDYIKENPEAAQFQSKEIQFKEELDIIFDGNAS*