AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048402.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048402.01.T01 MTR_8g072250 59.391 394 52 8 115 401 586 978 2.87e-126 388
MsG0080048402.01.T01 MTR_6g007690 78.495 93 19 1 5 96 193 285 2.52e-40 147
MsG0080048402.01.T01 MTR_7g116650 47.561 82 38 3 5 83 370 449 8.89e-13 70.1
MsG0080048402.01.T01 MTR_4g115630 40.964 83 42 2 5 82 342 422 2.11e-12 68.9
MsG0080048402.01.T01 MTR_7g084220 42.857 77 43 1 5 80 913 989 5.20e-12 68.2
MsG0080048402.01.T01 MTR_4g069970 38.000 100 59 2 5 103 267 364 1.20e-11 66.6
MsG0080048402.01.T01 MTR_4g069970 38.000 100 59 2 5 103 267 364 1.91e-11 65.9
MsG0080048402.01.T01 MTR_5g030920 40.964 83 47 1 5 85 723 805 2.10e-11 66.2
MsG0080048402.01.T01 MTR_5g030920 40.964 83 47 1 5 85 700 782 2.12e-11 66.2
MsG0080048402.01.T01 MTR_3g116590 36.000 100 61 3 5 103 261 358 5.47e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048402.01.T01 AT1G31730 31.466 464 210 14 22 401 499 938 1.29e-42 160
MsG0080048402.01.T01 AT2G39660 38.235 102 59 2 33 132 233 332 1.26e-12 69.3
MsG0080048402.01.T01 AT4G34500 39.216 102 55 4 5 103 274 371 3.22e-12 68.2
MsG0080048402.01.T01 AT5G58940 37.079 89 53 1 5 90 274 362 1.31e-11 66.6
MsG0080048402.01.T01 AT5G58940 37.079 89 53 1 5 90 274 362 1.31e-11 66.6
MsG0080048402.01.T01 AT5G58940 37.079 89 53 1 5 90 274 362 1.31e-11 66.6
MsG0080048402.01.T01 AT5G58940 37.079 89 53 1 5 90 274 362 1.31e-11 66.6
MsG0080048402.01.T01 AT1G17910 32.381 105 65 3 5 106 580 681 4.49e-11 65.1
MsG0080048402.01.T01 AT4G00330 37.037 81 47 1 5 81 248 328 6.13e-11 64.3
MsG0080048402.01.T01 AT4G00330 37.037 81 47 1 5 81 248 328 6.13e-11 64.3
MsG0080048402.01.T01 AT3G55450 46.032 63 32 1 32 94 227 287 8.39e-11 63.5
MsG0080048402.01.T01 AT3G55450 46.032 63 32 1 32 94 264 324 9.31e-11 63.5

Find 103 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAATTCTCTCTGGAAAA+AGG 0.146063 contig302end:+36804 MsG0080048402.01.T01:CDS
GCTCTCCCCGGATGCTTTAA+TGG 0.165573 contig302end:-41596 None:intergenic
CTTATGATTACAACTGTTAT+TGG 0.194876 contig302end:+39702 MsG0080048402.01.T01:CDS
TCTGGTGATGTTTACAGTTT+TGG 0.204107 contig302end:+36770 MsG0080048402.01.T01:CDS
GAGGCAAAACTATCAGATTT+TGG 0.206253 contig302end:+36643 MsG0080048402.01.T01:CDS
GTCATGCCATTCACTGGATT+TGG 0.212530 contig302end:-41352 None:intergenic
TGGTGGTTGCTTTGATATTC+AGG 0.220630 contig302end:-36737 None:intergenic
TGCTAATGCTAAAGATTCTT+TGG 0.275970 contig302end:+41940 MsG0080048402.01.T01:CDS
ACCAATGTCACTTAGTAAAA+TGG 0.280833 contig302end:+36850 MsG0080048402.01.T01:CDS
CTCTCCCCGGATGCTTTAAT+GGG 0.313257 contig302end:-41595 None:intergenic
CAGCCAACAAATATCCTTCT+TGG 0.315747 contig302end:+36611 MsG0080048402.01.T01:CDS
TCAGAAGTGAGAGGAACTTT+TGG 0.322037 contig302end:+36704 MsG0080048402.01.T01:CDS
AAGCTTGCCGCTTCATTGTT+TGG 0.324600 contig302end:+41469 MsG0080048402.01.T01:CDS
TCATGCCATTCACTGGATTT+GGG 0.337904 contig302end:-41351 None:intergenic
CTAGTTGATGTTCTTCTCTC+AGG 0.348573 contig302end:-41505 None:intergenic
GCAGCACCAACATTAGCTTT+TGG 0.353994 contig302end:-41538 None:intergenic
GATTATCTAAAGTTATTGAT+AGG 0.356845 contig302end:+36665 MsG0080048402.01.T01:CDS
TCCACAAGATTTGCTTGACT+TGG 0.356959 contig302end:+41636 MsG0080048402.01.T01:CDS
TGTGGAGGAGATTGTTGATT+GGG 0.370225 contig302end:-41619 None:intergenic
TACCTCAATGTCTTCGCAAC+TGG 0.388904 contig302end:-39766 None:intergenic
GATTACAACTGTTATTGGTT+TGG 0.391454 contig302end:+39707 MsG0080048402.01.T01:CDS
ACCTTTGTCATGCCATTCAC+TGG 0.403390 contig302end:-41358 None:intergenic
CTGTTATTGGTTTGGATGCA+CGG 0.418107 contig302end:+39715 MsG0080048402.01.T01:CDS
GTCGTGGATGATAGTGAAAC+TGG 0.422782 contig302end:-41155 None:intergenic
TCCTTCTTGGTCAAACTTTG+AGG 0.429982 contig302end:+36624 MsG0080048402.01.T01:CDS
CAGATGGGTGTGACCCCAAC+TGG 0.430929 contig302end:+41983 MsG0080048402.01.T01:CDS
GATCCTTCTAGTTGCATGAA+TGG 0.435948 contig302end:-41695 None:intergenic
AGTTGGGATTCTGTCCAGTT+GGG 0.436391 contig302end:-41997 None:intergenic
GACCCATTCATGCAACTAGA+AGG 0.441460 contig302end:+41692 MsG0080048402.01.T01:CDS
GTTGTGCCCATTAAAGCATC+CGG 0.454743 contig302end:+41589 MsG0080048402.01.T01:CDS
GAAACTGGAGGTAACTTTGA+TGG 0.455132 contig302end:-41140 None:intergenic
GCGCTCGTTCTCTGATATGT+AGG 0.465295 contig302end:-41016 None:intergenic
CCACAAGATTTGCTTGACTT+GGG 0.468481 contig302end:+41637 MsG0080048402.01.T01:CDS
GTACTTCTACAAATTCTCTC+TGG 0.469742 contig302end:+36797 MsG0080048402.01.T01:CDS
CCCCACTTTCTATAGCCTGC+TGG 0.471779 contig302end:-40987 None:intergenic
GCCTCAAAGTTTGACCAAGA+AGG 0.474892 contig302end:-36625 None:intergenic
TGGGGTGCAACAGTGACATT+TGG 0.476070 contig302end:-41664 None:intergenic
ATATCAGAGAACGAGCGCTC+TGG 0.477437 contig302end:+41021 MsG0080048402.01.T01:CDS
AGCAAGTCTCTGAACAAGTT+GGG 0.478029 contig302end:-42013 None:intergenic
TGACCAAGAAGGATATTTGT+TGG 0.478399 contig302end:-36614 None:intergenic
GATTTGGGCAGTAGAATTTG+AGG 0.480605 contig302end:-41336 None:intergenic
AACCACCATGTAAATTCATC+TGG 0.480610 contig302end:+36752 MsG0080048402.01.T01:CDS
ATCCTTCTAGTTGCATGAAT+GGG 0.483446 contig302end:-41694 None:intergenic
ATTTCAGCATAAACAAATAC+AGG 0.494866 contig302end:-39569 None:intergenic
TGCTAAAGATTCTTTGGAGA+AGG 0.496576 contig302end:+41946 MsG0080048402.01.T01:CDS
CTTGCCGCTTCATTGTTTGG+CGG 0.500585 contig302end:+41472 MsG0080048402.01.T01:CDS
ATAATCCCACTGACGTGATC+TGG 0.505989 contig302end:-41222 None:intergenic
CCTCAATGATTATATCCAGC+AGG 0.506143 contig302end:+40972 MsG0080048402.01.T01:CDS
CCCTTCACAGATTGTGATAC+GGG 0.506698 contig302end:-41917 None:intergenic
CTTACTGTAGAACTAATGCT+TGG 0.508595 contig302end:-41723 None:intergenic
TACTGCCCAAATCCAGTGAA+TGG 0.510587 contig302end:+41346 MsG0080048402.01.T01:CDS
TGGAGAAGGATGCAAAAGTC+AGG 0.518290 contig302end:+41960 MsG0080048402.01.T01:CDS
TGCATGAATGGGTCCACGGT+GGG 0.521211 contig302end:-41683 None:intergenic
CATCACCAGATGAATTTACA+TGG 0.526420 contig302end:-36757 None:intergenic
ATCCAGCAGGCTATAGAAAG+TGG 0.527579 contig302end:+40985 MsG0080048402.01.T01:CDS
AAGCAAGTCTCTGAACAAGT+TGG 0.532860 contig302end:-42014 None:intergenic
TTGTTGATTGGGGCTCTCCC+CGG 0.535513 contig302end:-41608 None:intergenic
TTGTGGAGGAGATTGTTGAT+TGG 0.537074 contig302end:-41620 None:intergenic
CGCTCGTTCTCTGATATGTA+GGG 0.543766 contig302end:-41015 None:intergenic
CAGCAGCTGTCAGAGGCACA+CGG 0.546767 contig302end:+41877 MsG0080048402.01.T01:intron
AAGTTGGGATTCTGTCCAGT+TGG 0.548304 contig302end:-41998 None:intergenic
ACCCTTCACAGATTGTGATA+CGG 0.548453 contig302end:-41918 None:intergenic
TTACTGTAGAACTAATGCTT+GGG 0.548787 contig302end:-41722 None:intergenic
GACTGACCTTGTTCCAGTGT+CGG 0.553943 contig302end:+41175 MsG0080048402.01.T01:CDS
TTGTGCCCATTAAAGCATCC+GGG 0.557960 contig302end:+41590 MsG0080048402.01.T01:CDS
AACTTGTTCAGAGACTTGCT+TGG 0.559297 contig302end:+42016 MsG0080048402.01.T01:CDS
GCCCGTATCACAATCTGTGA+AGG 0.559581 contig302end:+41916 MsG0080048402.01.T01:CDS
TCCAGCAGGCTATAGAAAGT+GGG 0.565415 contig302end:+40986 MsG0080048402.01.T01:CDS
GGATGCAAAAGTCAGGCAGA+TGG 0.568516 contig302end:+41967 MsG0080048402.01.T01:CDS
TGGTGCTGCAGACAGACCTC+AGG 0.571390 contig302end:+41552 MsG0080048402.01.T01:CDS
GATGCAAAAGTCAGGCAGAT+GGG 0.571902 contig302end:+41968 MsG0080048402.01.T01:CDS
CACTGGAACAAGGTCAGTCG+TGG 0.576617 contig302end:-41171 None:intergenic
GTTGGGATTCTGTCCAGTTG+GGG 0.577231 contig302end:-41996 None:intergenic
GGAGGTAACTTTGATGGCAC+AGG 0.577747 contig302end:-41134 None:intergenic
GTGGAGGAGATTGTTGATTG+GGG 0.582687 contig302end:-41618 None:intergenic
CCTGCTGGATATAATCATTG+AGG 0.583089 contig302end:-40972 None:intergenic
TGTTATTGGTTTGGATGCAC+GGG 0.584984 contig302end:+39716 MsG0080048402.01.T01:CDS
GCATGAATGGGTCCACGGTG+GGG 0.591921 contig302end:-41682 None:intergenic
GCATACAATGAGTCCGACAC+TGG 0.596909 contig302end:-41188 None:intergenic
TGCCAGTTGCGAAGACATTG+AGG 0.598185 contig302end:+39764 MsG0080048402.01.T01:CDS
AGAGAACGAGCGCTCTGGAG+CGG 0.605954 contig302end:+41026 MsG0080048402.01.T01:CDS
AAGGTTCCAAAAGCTAATGT+TGG 0.606418 contig302end:+41532 MsG0080048402.01.T01:CDS
AGCAGCTGTCAGAGGCACAC+GGG 0.608330 contig302end:+41878 MsG0080048402.01.T01:intron
TCCAGTGAATGGCATGACAA+AGG 0.613450 contig302end:+41357 MsG0080048402.01.T01:CDS
CCCAAGTCAAGCAAATCTTG+TGG 0.620345 contig302end:-41637 None:intergenic
CCCGTATCACAATCTGTGAA+GGG 0.622447 contig302end:+41917 MsG0080048402.01.T01:CDS
TAGTTGCATGAATGGGTCCA+CGG 0.625443 contig302end:-41687 None:intergenic
TCAAATGCAGCAGCTGTCAG+AGG 0.630728 contig302end:+41870 MsG0080048402.01.T01:intron
TGTCGGACTCATTGTATGCG+AGG 0.635230 contig302end:+41192 MsG0080048402.01.T01:CDS
TTGCATGAATGGGTCCACGG+TGG 0.635366 contig302end:-41684 None:intergenic
ATGAGTCCGACACTGGAACA+AGG 0.640091 contig302end:-41181 None:intergenic
TCTTCGCAACTGGCATCATG+TGG 0.645470 contig302end:-39756 None:intergenic
ACAGATTGTGATACGGGCGA+CGG 0.646894 contig302end:-41911 None:intergenic
AGAACCGCCAAACAATGAAG+CGG 0.647321 contig302end:-41476 None:intergenic
AAGAACATCAACTAGCAGCA+AGG 0.653866 contig302end:+41513 MsG0080048402.01.T01:CDS
AGTGAATGGCATGACAAAGG+TGG 0.661156 contig302end:+41360 MsG0080048402.01.T01:CDS
CCAGCAGGCTATAGAAAGTG+GGG 0.661545 contig302end:+40987 MsG0080048402.01.T01:CDS
AAGTCAAGCAAATCTTGTGG+AGG 0.665010 contig302end:-41634 None:intergenic
GTCACTGTTGCACCCCACCG+TGG 0.678806 contig302end:+41670 MsG0080048402.01.T01:CDS
TGTGCCCATTAAAGCATCCG+GGG 0.682990 contig302end:+41591 MsG0080048402.01.T01:CDS
TATGCTAGTTCAGAAGTGAG+AGG 0.694719 contig302end:+36695 MsG0080048402.01.T01:CDS
GTGGATGATAGTGAAACTGG+AGG 0.718435 contig302end:-41152 None:intergenic
CACCAGATGAATTTACATGG+TGG 0.726292 contig302end:-36754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAGATATAAATAAAA+AGG - contig302end:38672-38691 None:intergenic 10.0%
!! AGAAATAAAAAAAAATATTG+AGG + contig302end:37978-37997 MsG0080048402.01.T01:intron 10.0%
!! GAAATAAAAAAAAATATTGA+GGG + contig302end:37979-37998 MsG0080048402.01.T01:intron 10.0%
!!! ATGAATTAATTTTTCTTAAA+TGG - contig302end:37658-37677 None:intergenic 10.0%
!!! CACATATTTTAATTTTATTT+TGG + contig302end:37795-37814 MsG0080048402.01.T01:intron 10.0%
!! AACAAAAATAATTCTCAAAA+GGG - contig302end:38593-38612 None:intergenic 15.0%
!! ATATGAATGTTTAGAAATTT+CGG + contig302end:40668-40687 MsG0080048402.01.T01:intron 15.0%
!! ATTACAATTCATAAAAATTC+GGG - contig302end:38475-38494 None:intergenic 15.0%
!! GATTACAATTCATAAAAATT+CGG - contig302end:38476-38495 None:intergenic 15.0%
!! TATATAGTAGTTAATGAAAT+AGG - contig302end:36994-37013 None:intergenic 15.0%
!!! AGTATAAATTTTACTTTTCA+AGG - contig302end:37518-37537 None:intergenic 15.0%
!!! CTAATATGTTTTGAATAAAA+GGG + contig302end:38079-38098 MsG0080048402.01.T01:intron 15.0%
!!! GTATAAATTTTACTTTTCAA+GGG - contig302end:37517-37536 None:intergenic 15.0%
!!! TAATATGTTTTGAATAAAAG+GGG + contig302end:38080-38099 MsG0080048402.01.T01:intron 15.0%
!!! TAGAAAGTTTTTAATGTAAA+TGG + contig302end:38329-38348 MsG0080048402.01.T01:intron 15.0%
!!! TATTTTTTTTAAATTTCCCA+GGG + contig302end:40612-40631 MsG0080048402.01.T01:intron 15.0%
!!! TCTAATATGTTTTGAATAAA+AGG + contig302end:38078-38097 MsG0080048402.01.T01:intron 15.0%
!!! TTATTTTTTTTAAATTTCCC+AGG + contig302end:40611-40630 MsG0080048402.01.T01:intron 15.0%
!! AAAATAATGTAACCATACAT+TGG + contig302end:37123-37142 MsG0080048402.01.T01:intron 20.0%
!! AATGACAATTGTAAATCAAT+TGG + contig302end:38196-38215 MsG0080048402.01.T01:intron 20.0%
!! AATGTACTTAAAATACCAAA+GGG - contig302end:38630-38649 None:intergenic 20.0%
!! CGATAAAAATACAATATGTA+AGG - contig302end:39399-39418 None:intergenic 20.0%
!! GAACAAAAATAATTCTCAAA+AGG - contig302end:38594-38613 None:intergenic 20.0%
!! TAAATGTAACATTTAGTACA+AGG - contig302end:36911-36930 None:intergenic 20.0%
!! TAAATTACAACTGACAAAAA+AGG - contig302end:40718-40737 None:intergenic 20.0%
!! TAATGTACTTAAAATACCAA+AGG - contig302end:38631-38650 None:intergenic 20.0%
!! TACTAAACACAATAAAACAT+GGG - contig302end:37770-37789 None:intergenic 20.0%
!! TATTAATTGCTGCAATTAAT+AGG - contig302end:38230-38249 None:intergenic 20.0%
!! TCATACATAACAAAATGAAA+TGG + contig302end:37162-37181 MsG0080048402.01.T01:intron 20.0%
!! TCTAACTATTTCATTAACTT+TGG + contig302end:36959-36978 MsG0080048402.01.T01:intron 20.0%
!! TTACTAAACACAATAAAACA+TGG - contig302end:37771-37790 None:intergenic 20.0%
!!! AGTTGTAATTTATGATTTGT+TGG + contig302end:40726-40745 MsG0080048402.01.T01:intron 20.0%
!!! GATTATCTAAAGTTATTGAT+AGG + contig302end:36665-36684 MsG0080048402.01.T01:CDS 20.0%
!!! GCTATTGATTTTATAATTTG+TGG + contig302end:37723-37742 MsG0080048402.01.T01:intron 20.0%
!!! TATCTTATAATGTCTTTTTC+AGG + contig302end:39512-39531 MsG0080048402.01.T01:intron 20.0%
!!! TATTTAACATGGTTTAAAAC+AGG + contig302end:39939-39958 MsG0080048402.01.T01:intron 20.0%
! AAAATCTGCACAAAGTTATA+GGG + contig302end:37384-37403 MsG0080048402.01.T01:intron 25.0%
! AAATTCAATTCTTTGACGAT+TGG - contig302end:40551-40570 None:intergenic 25.0%
! AACATTTAGTACAAGGTTAA+GGG - contig302end:36904-36923 None:intergenic 25.0%
! AACTCAATCGTATAAATTAC+TGG + contig302end:37209-37228 MsG0080048402.01.T01:intron 25.0%
! ACTTTCTATAAATCAATGTG+CGG - contig302end:38317-38336 None:intergenic 25.0%
! AGTGCACGTTTAATTATTAA+GGG - contig302end:37577-37596 None:intergenic 25.0%
! ATGTACTTAAAATACCAAAG+GGG - contig302end:38629-38648 None:intergenic 25.0%
! ATTTCAGCATAAACAAATAC+AGG - contig302end:39572-39591 None:intergenic 25.0%
! CTTATGATTACAACTGTTAT+TGG + contig302end:39702-39721 MsG0080048402.01.T01:CDS 25.0%
! GTAATTCAAGCATCTTATAA+GGG - contig302end:37546-37565 None:intergenic 25.0%
! TAAAATATAGCAGAAGTCTA+TGG - contig302end:40237-40256 None:intergenic 25.0%
! TAACATTTAGTACAAGGTTA+AGG - contig302end:36905-36924 None:intergenic 25.0%
! TAGTGCACGTTTAATTATTA+AGG - contig302end:37578-37597 None:intergenic 25.0%
! TATATATTATAAGCGCCAAT+AGG + contig302end:37268-37287 MsG0080048402.01.T01:intron 25.0%
! TATGATCATAAAGTGTATAC+TGG - contig302end:38566-38585 None:intergenic 25.0%
! TGAGTTTCTGTTATATATTG+AGG - contig302end:37326-37345 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+AGG - contig302end:37547-37566 None:intergenic 25.0%
! TGTAATTCAAGCATCTTTAA+GGG + contig302end:38139-38158 MsG0080048402.01.T01:intron 25.0%
! TGTAATTCAATCATCTTTGA+GGG - contig302end:37457-37476 None:intergenic 25.0%
!! AATATGTAAGGTTTGTTTCA+AGG - contig302end:39387-39406 None:intergenic 25.0%
!! AGTGTATCTTTTAACATAAG+GGG - contig302end:37489-37508 None:intergenic 25.0%
!! GAGTGTATCTTTTAACATAA+GGG - contig302end:37490-37509 None:intergenic 25.0%
!! GGTAGTCTTTAAAAAAAAAC+AGG + contig302end:40408-40427 MsG0080048402.01.T01:intron 25.0%
!! TGAGTGTATCTTTTAACATA+AGG - contig302end:37491-37510 None:intergenic 25.0%
!!! AGTGTGTATTTTAACATAAG+AGG + contig302end:38108-38127 MsG0080048402.01.T01:intron 25.0%
!!! CAAAGAGGATATTTTTAAAG+AGG - contig302end:38510-38529 None:intergenic 25.0%
!!! CACTATTTTGGTATTTAACA+TGG + contig302end:39928-39947 MsG0080048402.01.T01:intron 25.0%
!!! GTGTGTATTTTAACATAAGA+GGG + contig302end:38109-38128 MsG0080048402.01.T01:intron 25.0%
!!! TAAATTTTACTTTTCAAGGG+AGG - contig302end:37514-37533 None:intergenic 25.0%
!!! TGTAGATTTTAACATAAGAG+AGG + contig302end:38007-38026 MsG0080048402.01.T01:intron 25.0%
AAAAAGGTGAGTATGTGAAT+AGG - contig302end:40044-40063 None:intergenic 30.0%
AAAACAGAGCAGAAAAACAA+TGG - contig302end:39428-39447 None:intergenic 30.0%
AAAAGGTGAGTATGTGAATA+GGG - contig302end:40043-40062 None:intergenic 30.0%
AAATGTGCAGAAAAAATTGC+TGG - contig302end:38875-38894 None:intergenic 30.0%
AAATTTCATGTCTGTTGTGT+TGG - contig302end:40346-40365 None:intergenic 30.0%
AATGTGCAGAAAAAATTGCT+GGG - contig302end:38874-38893 None:intergenic 30.0%
AATTTCATGTCTGTTGTGTT+GGG - contig302end:40345-40364 None:intergenic 30.0%
ACAAATGCACCTGATATTAT+GGG + contig302end:41765-41784 MsG0080048402.01.T01:intron 30.0%
ACGTTTAATTATTAAGGGAG+GGG - contig302end:37572-37591 None:intergenic 30.0%
AGTATTTACAAAGCAATACG+CGG - contig302end:38260-38279 None:intergenic 30.0%
AGTTAAAAGCAAGCATTTCT+AGG - contig302end:39452-39471 None:intergenic 30.0%
ATACTCACAACGTTAATTCA+TGG + contig302end:38275-38294 MsG0080048402.01.T01:intron 30.0%
ATATTATGGGACTCTATAGT+GGG + contig302end:41778-41797 MsG0080048402.01.T01:intron 30.0%
ATGGTAGCATACATAACAAA+AGG + contig302end:37181-37200 MsG0080048402.01.T01:intron 30.0%
CACGTTTAATTATTAAGGGA+GGG - contig302end:37573-37592 None:intergenic 30.0%
GAAAATCTGCACAAAGTTAT+AGG + contig302end:37383-37402 MsG0080048402.01.T01:intron 30.0%
GAATGTTTAGAAATTTCGGT+CGG + contig302end:40672-40691 MsG0080048402.01.T01:intron 30.0%
GATTCCAAATTAAAATCCCT+GGG - contig302end:40631-40650 None:intergenic 30.0%
GCCATTATAAACTAACCTAT+TGG - contig302end:37286-37305 None:intergenic 30.0%
GTAATTCAAGCATCTTTAAG+GGG + contig302end:38140-38159 MsG0080048402.01.T01:intron 30.0%
GTAATTCAATCATCTTTGAG+GGG - contig302end:37456-37475 None:intergenic 30.0%
GTGTAATTCAAGCATCTTTA+AGG + contig302end:38138-38157 MsG0080048402.01.T01:intron 30.0%
GTGTAATTCAATCATCTTTG+AGG - contig302end:37458-37477 None:intergenic 30.0%
GTTTATGCTGAAATTTGAGT+GGG + contig302end:39578-39597 MsG0080048402.01.T01:intron 30.0%
TAATGAAATAGTTAGAAGCG+TGG - contig302end:36955-36974 None:intergenic 30.0%
TACAAATGCACCTGATATTA+TGG + contig302end:41764-41783 MsG0080048402.01.T01:intron 30.0%
TATGTGAATAGGGTCAAAAT+AGG - contig302end:40033-40052 None:intergenic 30.0%
TGATTCCAAATTAAAATCCC+TGG - contig302end:40632-40651 None:intergenic 30.0%
TGCTAATGCTAAAGATTCTT+TGG + contig302end:41940-41959 MsG0080048402.01.T01:CDS 30.0%
TGTTTATGCTGAAATTTGAG+TGG + contig302end:39577-39596 MsG0080048402.01.T01:intron 30.0%
TTACTGTAGAACTAATGCTT+GGG - contig302end:41725-41744 None:intergenic 30.0%
TTCACTTCGAATTACAACTT+GGG + contig302end:40494-40513 MsG0080048402.01.T01:intron 30.0%
! ACAAATTCTCTCTGGAAAAA+GGG + contig302end:36805-36824 MsG0080048402.01.T01:CDS 30.0%
! ACATGCTGAATCTTTTATGT+AGG + contig302end:40930-40949 MsG0080048402.01.T01:intron 30.0%
! ACCAATGTCACTTAGTAAAA+TGG + contig302end:36850-36869 MsG0080048402.01.T01:CDS 30.0%
! ACCATTTTACTAAGTGACAT+TGG - contig302end:36854-36873 None:intergenic 30.0%
! CTTTTATTGCTGCACTTAAT+AGG - contig302end:38380-38399 None:intergenic 30.0%
! GATTACAACTGTTATTGGTT+TGG + contig302end:39707-39726 MsG0080048402.01.T01:CDS 30.0%
! GGATCAAATTTTCAACCATT+TGG + contig302end:40782-40801 MsG0080048402.01.T01:intron 30.0%
! GTGTATCTTTTAACATAAGG+GGG - contig302end:37488-37507 None:intergenic 30.0%
! TAATTCAATCATCTTTGAGG+GGG - contig302end:37455-37474 None:intergenic 30.0%
! TACAAATTCTCTCTGGAAAA+AGG + contig302end:36804-36823 MsG0080048402.01.T01:CDS 30.0%
! TATTCACATACTCACCTTTT+TGG + contig302end:40043-40062 MsG0080048402.01.T01:intron 30.0%
! TGTATCTTTTAACATAAGGG+GGG - contig302end:37487-37506 None:intergenic 30.0%
! TTACTACCGTTTGATTTACA+AGG - contig302end:38355-38374 None:intergenic 30.0%
!! AAATGGCCTTGTAAATCAAA+CGG + contig302end:38346-38365 MsG0080048402.01.T01:intron 30.0%
!! AGATTTTAACATAAGAGAGG+AGG + contig302end:38010-38029 MsG0080048402.01.T01:intron 30.0%
!! ATGTTTTGAATAAAAGGGGA+GGG + contig302end:38084-38103 MsG0080048402.01.T01:intron 30.0%
!! ATTTTAACATAAGAGAGGAG+GGG + contig302end:38012-38031 MsG0080048402.01.T01:intron 30.0%
!! GATTTTAACATAAGAGAGGA+GGG + contig302end:38011-38030 MsG0080048402.01.T01:intron 30.0%
!! GCCAATAGGTTAGTTTATAA+TGG + contig302end:37282-37301 MsG0080048402.01.T01:intron 30.0%
!! TATGTTTTGAATAAAAGGGG+AGG + contig302end:38083-38102 MsG0080048402.01.T01:intron 30.0%
!! TCAAGACATCACTTTTATCA+GGG + contig302end:40105-40124 MsG0080048402.01.T01:intron 30.0%
!! TTCTCGGTATTTTTGCAAAA+GGG + contig302end:38801-38820 MsG0080048402.01.T01:intron 30.0%
!!! ATTTCCCAGGGATTTTAATT+TGG + contig302end:40624-40643 MsG0080048402.01.T01:intron 30.0%
!!! CTATCGATTTTCTTAGTTCT+CGG + contig302end:38785-38804 MsG0080048402.01.T01:intron 30.0%
!!! CTTATAATGTCTTTTTCAGG+TGG + contig302end:39515-39534 MsG0080048402.01.T01:intron 30.0%
!!! GTATTTTAACATAAGAGGGA+GGG + contig302end:38113-38132 MsG0080048402.01.T01:intron 30.0%
!!! TATTTTAACATAAGAGGGAG+GGG + contig302end:38114-38133 MsG0080048402.01.T01:intron 30.0%
!!! TATTTTTTGCAACAAGTGAC+TGG - contig302end:38984-39003 None:intergenic 30.0%
!!! TGTATTTTAACATAAGAGGG+AGG + contig302end:38112-38131 MsG0080048402.01.T01:intron 30.0%
!!! TTTCATTTTGAGACCAGAAA+CGG + contig302end:39218-39237 MsG0080048402.01.T01:intron 30.0%
AAACTTCTATCGCCAATGTA+TGG - contig302end:37138-37157 None:intergenic 35.0%
AACCACCATGTAAATTCATC+TGG + contig302end:36752-36771 MsG0080048402.01.T01:CDS 35.0%
AAGGTTCCAAAAGCTAATGT+TGG + contig302end:41532-41551 MsG0080048402.01.T01:CDS 35.0%
AATAGGGTCAAAATAGGACA+TGG - contig302end:40027-40046 None:intergenic 35.0%
AGGAGAATCAAATGAGTGTT+GGG - contig302end:38915-38934 None:intergenic 35.0%
AGTAAGGCTCTTAATTCAAC+AGG - contig302end:38935-38954 None:intergenic 35.0%
ATCATAGCAAAATTGCATCC+AGG - contig302end:39275-39294 None:intergenic 35.0%
ATCATCAGATACAGATCATC+AGG + contig302end:41243-41262 MsG0080048402.01.T01:intron 35.0%
ATGACTTTACAAAGCATACG+CGG - contig302end:38409-38428 None:intergenic 35.0%
ATGTAATTCAAGCTTCTCTC+AGG + contig302end:38036-38055 MsG0080048402.01.T01:intron 35.0%
CATCACCAGATGAATTTACA+TGG - contig302end:36760-36779 None:intergenic 35.0%
CGAGAACTAAGAAAATCGAT+AGG - contig302end:38787-38806 None:intergenic 35.0%
CGTTTAATTATTAAGGGAGG+GGG - contig302end:37571-37590 None:intergenic 35.0%
CTATAGAGTCCCATAATATC+AGG - contig302end:41777-41796 None:intergenic 35.0%
CTCTATTAGACAATGACTGT+TGG + contig302end:40210-40229 MsG0080048402.01.T01:intron 35.0%
CTTACTGTAGAACTAATGCT+TGG - contig302end:41726-41745 None:intergenic 35.0%
CTTCACTTCGAATTACAACT+TGG + contig302end:40493-40512 MsG0080048402.01.T01:intron 35.0%
GATATTATGGGACTCTATAG+TGG + contig302end:41777-41796 MsG0080048402.01.T01:intron 35.0%
GATCATAAAGTGTATACTGG+AGG - contig302end:38563-38582 None:intergenic 35.0%
GCACGTTTAATTATTAAGGG+AGG - contig302end:37574-37593 None:intergenic 35.0%
GGTCAAAAGTAAACTGAAAC+TGG - contig302end:40006-40025 None:intergenic 35.0%
GTACTTCTACAAATTCTCTC+TGG + contig302end:36797-36816 MsG0080048402.01.T01:CDS 35.0%
TATTATGGGACTCTATAGTG+GGG + contig302end:41779-41798 MsG0080048402.01.T01:intron 35.0%
TCATCAGATACAGATCATCA+GGG + contig302end:41244-41263 MsG0080048402.01.T01:intron 35.0%
TCATGTAAGAAACACTGCAT+TGG - contig302end:40319-40338 None:intergenic 35.0%
TCTGTTGTACTAATGTGCTT+GGG + contig302end:40858-40877 MsG0080048402.01.T01:intron 35.0%
TGACCAAGAAGGATATTTGT+TGG - contig302end:36617-36636 None:intergenic 35.0%
TGATTAATGTCTCAACTCTC+AGG + contig302end:40761-40780 MsG0080048402.01.T01:intron 35.0%
TGTAATTCAAGCTTCTCTCA+GGG + contig302end:38037-38056 MsG0080048402.01.T01:intron 35.0%
TTCTGGTCTCAAAATGAAAC+AGG - contig302end:39217-39236 None:intergenic 35.0%
TTGAAGTTGAACCCCATTAT+GGG + contig302end:40570-40589 MsG0080048402.01.T01:intron 35.0%
TTGAGCTTATGAAGTTCCAA+AGG + contig302end:41109-41128 MsG0080048402.01.T01:intron 35.0%
! AATTCAATCATCTTTGAGGG+GGG - contig302end:37454-37473 None:intergenic 35.0%
! ATCCTTCTAGTTGCATGAAT+GGG - contig302end:41697-41716 None:intergenic 35.0%
! CAACGACGTTTTCACTATTT+TGG + contig302end:39916-39935 MsG0080048402.01.T01:intron 35.0%
! GAGGCAAAACTATCAGATTT+TGG + contig302end:36643-36662 MsG0080048402.01.T01:CDS 35.0%
! GTGCAGATTTTCGATTCAAA+GGG - contig302end:37375-37394 None:intergenic 35.0%
! TGCTAAAGATTCTTTGGAGA+AGG + contig302end:41946-41965 MsG0080048402.01.T01:CDS 35.0%
! TGCTGAATCTTTTATGTAGG+TGG + contig302end:40933-40952 MsG0080048402.01.T01:intron 35.0%
! TGTGCAGATTTTCGATTCAA+AGG - contig302end:37376-37395 None:intergenic 35.0%
! TGTTCTGATCAACTTTTACG+TGG - contig302end:37100-37119 None:intergenic 35.0%
! TTTGAAGTTGAACCCCATTA+TGG + contig302end:40569-40588 MsG0080048402.01.T01:intron 35.0%
!! ACCTTTTTGGTCTTCTGATT+CGG + contig302end:40056-40075 MsG0080048402.01.T01:intron 35.0%
!! CATTGGTTCATGCAAAGTTA+TGG - contig302end:40302-40321 None:intergenic 35.0%
!! CTCAAGACATCACTTTTATC+AGG + contig302end:40104-40123 MsG0080048402.01.T01:intron 35.0%
!! GTTCTCGGTATTTTTGCAAA+AGG + contig302end:38800-38819 MsG0080048402.01.T01:intron 35.0%
!! TCGCTTTTAATAAACCCCTT+TGG + contig302end:38612-38631 MsG0080048402.01.T01:intron 35.0%
!! TCTGGTGATGTTTACAGTTT+TGG + contig302end:36770-36789 MsG0080048402.01.T01:CDS 35.0%
!! TGATGGTTGATGGTTATCTA+TGG + contig302end:39112-39131 MsG0080048402.01.T01:intron 35.0%
!! TGATGTTTACAGTTTTGGCA+TGG + contig302end:36775-36794 MsG0080048402.01.T01:CDS 35.0%
!! TGTTTTGAATAAAAGGGGAG+GGG + contig302end:38085-38104 MsG0080048402.01.T01:intron 35.0%
!! TTTTAAAGAGGTAGAGCTGT+CGG - contig302end:38498-38517 None:intergenic 35.0%
!!! AATGTCTTTTTCAGGTGGAT+AGG + contig302end:39520-39539 MsG0080048402.01.T01:intron 35.0%
!!! CGGGACATTTTTTTAGCATA+GGG - contig302end:38456-38475 None:intergenic 35.0%
!!! TCGGGACATTTTTTTAGCAT+AGG - contig302end:38457-38476 None:intergenic 35.0%
AACCATTTGGCTGTTGACAT+GGG + contig302end:40795-40814 MsG0080048402.01.T01:intron 40.0%
AAGAACATCAACTAGCAGCA+AGG + contig302end:41513-41532 MsG0080048402.01.T01:CDS 40.0%
AAGCAAGTCTCTGAACAAGT+TGG - contig302end:42017-42036 None:intergenic 40.0%
AAGTCAAGCAAATCTTGTGG+AGG - contig302end:41637-41656 None:intergenic 40.0%
ACAGAGCAGAAAAACAATGG+TGG - contig302end:39425-39444 None:intergenic 40.0%
ACCCTTCACAGATTGTGATA+CGG - contig302end:41921-41940 None:intergenic 40.0%
AGCAAGTCTCTGAACAAGTT+GGG - contig302end:42016-42035 None:intergenic 40.0%
AGCACAGAAAACCTAAACAC+AGG - contig302end:39171-39190 None:intergenic 40.0%
AGCATAAGCGTATCATGTGT+TGG - contig302end:40386-40405 None:intergenic 40.0%
ATCCAGGATCATGAATTTGC+AGG - contig302end:39259-39278 None:intergenic 40.0%
ATCCTGCAAATTCATGATCC+TGG + contig302end:39254-39273 MsG0080048402.01.T01:intron 40.0%
CAACAAGTGACTGGTAGTAA+TGG - contig302end:38975-38994 None:intergenic 40.0%
CACATGATACGCTTATGCTT+AGG + contig302end:40387-40406 MsG0080048402.01.T01:intron 40.0%
CACCAGATGAATTTACATGG+TGG - contig302end:36757-36776 None:intergenic 40.0%
CAGCCAACAAATATCCTTCT+TGG + contig302end:36611-36630 MsG0080048402.01.T01:CDS 40.0%
CAGGAGAATCAAATGAGTGT+TGG - contig302end:38916-38935 None:intergenic 40.0%
CATGCAAAGTTATGGTCATC+AGG - contig302end:40294-40313 None:intergenic 40.0%
CCTCAATGATTATATCCAGC+AGG + contig302end:40972-40991 MsG0080048402.01.T01:CDS 40.0%
CCTGCTGGATATAATCATTG+AGG - contig302end:40975-40994 None:intergenic 40.0%
CTATGGAAGAGAGATCCAAA+AGG + contig302end:39129-39148 MsG0080048402.01.T01:intron 40.0%
CTCTGTTGTACTAATGTGCT+TGG + contig302end:40857-40876 MsG0080048402.01.T01:intron 40.0%
CTTTCAGTTCAATGCTCTGA+TGG + contig302end:40266-40285 MsG0080048402.01.T01:intron 40.0%
GAAACTGGAGGTAACTTTGA+TGG - contig302end:41143-41162 None:intergenic 40.0%
GATTTGGGCAGTAGAATTTG+AGG - contig302end:41339-41358 None:intergenic 40.0%
GCAAAAGGGCCCTATAATTA+GGG + contig302end:38815-38834 MsG0080048402.01.T01:intron 40.0%
GCATAAGCGTATCATGTGTT+GGG - contig302end:40385-40404 None:intergenic 40.0%
GCGTATGCTTTGTAAAGTCA+TGG + contig302end:38408-38427 MsG0080048402.01.T01:intron 40.0%
GGGCAAGATAAGACATGAAA+TGG - contig302end:38854-38873 None:intergenic 40.0%
GTAATTCAAGCTTCTCTCAG+GGG + contig302end:38038-38057 MsG0080048402.01.T01:intron 40.0%
GTGACTGGTAGTAATGGTTA+CGG - contig302end:38969-38988 None:intergenic 40.0%
TACAAAGCAATACGCGGTTA+AGG - contig302end:38254-38273 None:intergenic 40.0%
TACCTCCGTCCCTAATTATA+GGG - contig302end:38827-38846 None:intergenic 40.0%
TATGCTAGTTCAGAAGTGAG+AGG + contig302end:36695-36714 MsG0080048402.01.T01:CDS 40.0%
TCAACTGCAGTGTCAATCTT+TGG + contig302end:39634-39653 MsG0080048402.01.T01:intron 40.0%
TCATGCCATTCACTGGATTT+GGG - contig302end:41354-41373 None:intergenic 40.0%
TCCGAATCAGAAGACCAAAA+AGG - contig302end:40060-40079 None:intergenic 40.0%
TCCTTCTTGGTCAAACTTTG+AGG + contig302end:36624-36643 MsG0080048402.01.T01:CDS 40.0%
TGAAGTTGAACCCCATTATG+GGG + contig302end:40571-40590 MsG0080048402.01.T01:intron 40.0%
TGACTGAGAGAGTGATTAAG+AGG + contig302end:39058-39077 MsG0080048402.01.T01:intron 40.0%
TGACTGGTAGTAATGGTTAC+GGG - contig302end:38968-38987 None:intergenic 40.0%
TGCAAAAGGGCCCTATAATT+AGG + contig302end:38814-38833 MsG0080048402.01.T01:intron 40.0%
TTGAGACAATAACAGAGGCA+AGG + contig302end:40520-40539 MsG0080048402.01.T01:intron 40.0%
TTGTGGAGGAGATTGTTGAT+TGG - contig302end:41623-41642 None:intergenic 40.0%
TTTAGCATAGGGACAAGATG+TGG - contig302end:38445-38464 None:intergenic 40.0%
! AACTTGTTCAGAGACTTGCT+TGG + contig302end:42016-42035 MsG0080048402.01.T01:CDS 40.0%
! AGCATTGAACTGAAAGGAAG+AGG - contig302end:40262-40281 None:intergenic 40.0%
! AGGGTTTTCTACCTGTGTTT+AGG + contig302end:39157-39176 MsG0080048402.01.T01:intron 40.0%
! ATCCTCTTTGTGCTGCTAAA+TGG + contig302end:38520-38539 MsG0080048402.01.T01:intron 40.0%
! ATCTTTTAACATAAGGGGGG+AGG - contig302end:37484-37503 None:intergenic 40.0%
! ATTCAAGCATCTTTAAGGGG+AGG + contig302end:38143-38162 MsG0080048402.01.T01:intron 40.0%
! ATTCAATCATCTTTGAGGGG+GGG - contig302end:37453-37472 None:intergenic 40.0%
! CAAGTGGAGATCTTTTATCC+GGG + contig302end:41844-41863 MsG0080048402.01.T01:intron 40.0%
! CCACAAGATTTGCTTGACTT+GGG + contig302end:41637-41656 MsG0080048402.01.T01:CDS 40.0%
! CTAGTTGATGTTCTTCTCTC+AGG - contig302end:41508-41527 None:intergenic 40.0%
! CTGATCAACTTTTACGTGGT+TGG - contig302end:37096-37115 None:intergenic 40.0%
! GAATTTGAGGATGATGATGC+TGG - contig302end:41326-41345 None:intergenic 40.0%
! GAGAGGAACTTTTGGATATG+TGG + contig302end:36712-36731 MsG0080048402.01.T01:CDS 40.0%
! GATCCTTCTAGTTGCATGAA+TGG - contig302end:41698-41717 None:intergenic 40.0%
! GATTCAAAGGGTGCGATATT+CGG - contig302end:37363-37382 None:intergenic 40.0%
! GCAAGTGGAGATCTTTTATC+CGG + contig302end:41843-41862 MsG0080048402.01.T01:intron 40.0%
! GGAGTTTGAGACAATAACAG+AGG + contig302end:40515-40534 MsG0080048402.01.T01:intron 40.0%
! GTGTTGGGACTAGTATAAGA+TGG - contig302end:38900-38919 None:intergenic 40.0%
! TCAGAAGTGAGAGGAACTTT+TGG + contig302end:36704-36723 MsG0080048402.01.T01:CDS 40.0%
! TCCACAAGATTTGCTTGACT+TGG + contig302end:41636-41655 MsG0080048402.01.T01:CDS 40.0%
! TCTTTTAACATAAGGGGGGA+GGG - contig302end:37483-37502 None:intergenic 40.0%
! TGAAACAGGTTTTGCACAAG+CGG - contig302end:39203-39222 None:intergenic 40.0%
! TGATGGTGTTCAGAAGAAGT+GGG + contig302end:41280-41299 MsG0080048402.01.T01:intron 40.0%
! TGGTGGTTGCTTTGATATTC+AGG - contig302end:36740-36759 None:intergenic 40.0%
! TGTGGAGGAGATTGTTGATT+GGG - contig302end:41622-41641 None:intergenic 40.0%
!! CATCAGAGCATTGAACTGAA+AGG - contig302end:40268-40287 None:intergenic 40.0%
!! CTGTTATTGGTTTGGATGCA+CGG + contig302end:39715-39734 MsG0080048402.01.T01:CDS 40.0%
!! TGTTATTGGTTTGGATGCAC+GGG + contig302end:39716-39735 MsG0080048402.01.T01:CDS 40.0%
!! TTGATGGTGTTCAGAAGAAG+TGG + contig302end:41279-41298 MsG0080048402.01.T01:intron 40.0%
AAGGGCCCTATAATTAGGGA+CGG + contig302end:38819-38838 MsG0080048402.01.T01:intron 45.0%
AAGTTGGGATTCTGTCCAGT+TGG - contig302end:42001-42020 None:intergenic 45.0%
ACCTTTGTCATGCCATTCAC+TGG - contig302end:41361-41380 None:intergenic 45.0%
ACTTCTAGTGAACAGAGTGG+TGG + contig302end:41804-41823 MsG0080048402.01.T01:intron 45.0%
AGAAAGGCAGTGATGGTTGA+TGG + contig302end:39102-39121 MsG0080048402.01.T01:intron 45.0%
AGAACCGCCAAACAATGAAG+CGG - contig302end:41479-41498 None:intergenic 45.0%
AGAGAGTGATTAAGAGGCAG+AGG + contig302end:39064-39083 MsG0080048402.01.T01:intron 45.0%
AGAGATCCAAAAGGTCGAGA+GGG + contig302end:39138-39157 MsG0080048402.01.T01:intron 45.0%
AGATCATCAGGGCTTAAGCT+AGG + contig302end:41255-41274 MsG0080048402.01.T01:intron 45.0%
AGCCAAGATCAGCAAGAATC+TGG + contig302end:41069-41088 MsG0080048402.01.T01:intron 45.0%
AGTGAATGGCATGACAAAGG+TGG + contig302end:41360-41379 MsG0080048402.01.T01:CDS 45.0%
AGTTGGGATTCTGTCCAGTT+GGG - contig302end:42000-42019 None:intergenic 45.0%
ATAATCCCACTGACGTGATC+TGG - contig302end:41225-41244 None:intergenic 45.0%
ATCCAGCAGGCTATAGAAAG+TGG + contig302end:40985-41004 MsG0080048402.01.T01:CDS 45.0%
CAACCATTTGGCTGTTGACA+TGG + contig302end:40794-40813 MsG0080048402.01.T01:intron 45.0%
CACCATTTAGCAGCACAAAG+AGG - contig302end:38525-38544 None:intergenic 45.0%
CCCAAGTCAAGCAAATCTTG+TGG - contig302end:41640-41659 None:intergenic 45.0%
CCCGTATCACAATCTGTGAA+GGG + contig302end:41917-41936 MsG0080048402.01.T01:CDS 45.0%
CCCTTCACAGATTGTGATAC+GGG - contig302end:41920-41939 None:intergenic 45.0%
CGCTCGTTCTCTGATATGTA+GGG - contig302end:41018-41037 None:intergenic 45.0%
CTACCTCCGTCCCTAATTAT+AGG - contig302end:38828-38847 None:intergenic 45.0%
GAAGTTGAACCCCATTATGG+GGG + contig302end:40572-40591 MsG0080048402.01.T01:intron 45.0%
GACCCATTCATGCAACTAGA+AGG + contig302end:41692-41711 MsG0080048402.01.T01:CDS 45.0%
GATGCAAAAGTCAGGCAGAT+GGG + contig302end:41968-41987 MsG0080048402.01.T01:CDS 45.0%
GATGCTGGAGATGAATAAGC+TGG - contig302end:41311-41330 None:intergenic 45.0%
GATGGTGTTCAGAAGAAGTG+GGG + contig302end:41281-41300 MsG0080048402.01.T01:intron 45.0%
GCCTCAAAGTTTGACCAAGA+AGG - contig302end:36628-36647 None:intergenic 45.0%
GCTACTTCTAGTGAACAGAG+TGG + contig302end:41801-41820 MsG0080048402.01.T01:intron 45.0%
GTCATGCCATTCACTGGATT+TGG - contig302end:41355-41374 None:intergenic 45.0%
GTCCAGATTCTTGCTGATCT+TGG - contig302end:41074-41093 None:intergenic 45.0%
TACCCATGTCAACAGCCAAA+TGG - contig302end:40800-40819 None:intergenic 45.0%
TACCTCAATGTCTTCGCAAC+TGG - contig302end:39769-39788 None:intergenic 45.0%
TACTGCCCAAATCCAGTGAA+TGG + contig302end:41346-41365 MsG0080048402.01.T01:CDS 45.0%
TAGTTGCATGAATGGGTCCA+CGG - contig302end:41690-41709 None:intergenic 45.0%
TCCAGCAGGCTATAGAAAGT+GGG + contig302end:40986-41005 MsG0080048402.01.T01:CDS 45.0%
TCCAGTGAATGGCATGACAA+AGG + contig302end:41357-41376 MsG0080048402.01.T01:CDS 45.0%
TGGAGAAGGATGCAAAAGTC+AGG + contig302end:41960-41979 MsG0080048402.01.T01:CDS 45.0%
TTGCTGCAAATCAGTGGAGT+GGG - contig302end:39678-39697 None:intergenic 45.0%
! AAGCTTGCCGCTTCATTGTT+TGG + contig302end:41469-41488 MsG0080048402.01.T01:CDS 45.0%
! ACTGCAGCTTTTGAATCCTG+AGG - contig302end:41571-41590 None:intergenic 45.0%
! AGAAAACCCTCTCGACCTTT+TGG - contig302end:39147-39166 None:intergenic 45.0%
! CTTTTAACATAAGGGGGGAG+GGG - contig302end:37482-37501 None:intergenic 45.0%
! GTCGTGGATGATAGTGAAAC+TGG - contig302end:41158-41177 None:intergenic 45.0%
! GTGGAGGAGATTGTTGATTG+GGG - contig302end:41621-41640 None:intergenic 45.0%
! GTGGATGATAGTGAAACTGG+AGG - contig302end:41155-41174 None:intergenic 45.0%
! GTTGTGCCCATTAAAGCATC+CGG + contig302end:41589-41608 MsG0080048402.01.T01:CDS 45.0%
! TTCAATCATCTTTGAGGGGG+GGG - contig302end:37452-37471 None:intergenic 45.0%
! TTGTGCCCATTAAAGCATCC+GGG + contig302end:41590-41609 MsG0080048402.01.T01:CDS 45.0%
!! TTCTTAAGAGAGAGAGCGCT+AGG - contig302end:38725-38744 None:intergenic 45.0%
!!! GCAGCACCAACATTAGCTTT+TGG - contig302end:41541-41560 None:intergenic 45.0%
!!! ACATATTTTAATTTTATTTT+GGG + contig302end:37796-37815 MsG0080048402.01.T01:intron 5.0%
ACAGATTGTGATACGGGCGA+CGG - contig302end:41914-41933 None:intergenic 50.0%
ACTCACCAGATCACGTCAGT+GGG + contig302end:41217-41236 MsG0080048402.01.T01:intron 50.0%
AGCTGCTGCATTTGACAACC+CGG - contig302end:41865-41884 None:intergenic 50.0%
AGGGCTTAAGCTAGGCTTGA+TGG + contig302end:41263-41282 MsG0080048402.01.T01:intron 50.0%
ATATCAGAGAACGAGCGCTC+TGG + contig302end:41021-41040 MsG0080048402.01.T01:CDS 50.0%
ATGAGTCCGACACTGGAACA+AGG - contig302end:41184-41203 None:intergenic 50.0%
ATGATCCCGATGTCAAGAGG+AGG + contig302end:39319-39338 MsG0080048402.01.T01:intron 50.0%
ATTCAAGCTTCTCTCAGGGG+AGG + contig302end:38041-38060 MsG0080048402.01.T01:intron 50.0%
CAGCAAGAATCTGGACAGCA+TGG + contig302end:41078-41097 MsG0080048402.01.T01:intron 50.0%
CCAGCAGGCTATAGAAAGTG+GGG + contig302end:40987-41006 MsG0080048402.01.T01:CDS 50.0%
CGTACTCCTCCTCTTGACAT+CGG - contig302end:39328-39347 None:intergenic 50.0%
CTCTCCCCGGATGCTTTAAT+GGG - contig302end:41598-41617 None:intergenic 50.0%
CTGGTAGTAATGGTTACGGG+TGG - contig302end:38965-38984 None:intergenic 50.0%
GACTGACCTTGTTCCAGTGT+CGG + contig302end:41175-41194 MsG0080048402.01.T01:CDS 50.0%
GACTGAGAGAAAGGCAGTGA+TGG + contig302end:39095-39114 MsG0080048402.01.T01:intron 50.0%
GAGAGATCCAAAAGGTCGAG+AGG + contig302end:39137-39156 MsG0080048402.01.T01:intron 50.0%
GCATACAATGAGTCCGACAC+TGG - contig302end:41191-41210 None:intergenic 50.0%
GCCCGTATCACAATCTGTGA+AGG + contig302end:41916-41935 MsG0080048402.01.T01:CDS 50.0%
GCGCTCGTTCTCTGATATGT+AGG - contig302end:41019-41038 None:intergenic 50.0%
GGATGCAAAAGTCAGGCAGA+TGG + contig302end:41967-41986 MsG0080048402.01.T01:CDS 50.0%
GTACTCCTCCTCTTGACATC+GGG - contig302end:39327-39346 None:intergenic 50.0%
GTTGCTGCAAATCAGTGGAG+TGG - contig302end:39679-39698 None:intergenic 50.0%
GTTGGGATTCTGTCCAGTTG+GGG - contig302end:41999-42018 None:intergenic 50.0%
GTTGTGTGCGACTGAGAGAA+AGG + contig302end:39086-39105 MsG0080048402.01.T01:intron 50.0%
TACGGGTGGTACTAGCAGTA+AGG - contig302end:38951-38970 None:intergenic 50.0%
TCAAATGCAGCAGCTGTCAG+AGG + contig302end:41870-41889 MsG0080048402.01.T01:intron 50.0%
TCGGTCGGTGTATCTGTCTT+GGG + contig302end:40687-40706 MsG0080048402.01.T01:intron 50.0%
TCTAGTGAACAGAGTGGTGG+CGG + contig302end:41807-41826 MsG0080048402.01.T01:intron 50.0%
TCTTCGCAACTGGCATCATG+TGG - contig302end:39759-39778 None:intergenic 50.0%
TGCATGATCCCGATGTCAAG+AGG + contig302end:39316-39335 MsG0080048402.01.T01:intron 50.0%
TGCCAGTTGCGAAGACATTG+AGG + contig302end:39764-39783 MsG0080048402.01.T01:CDS 50.0%
TGGGGTGCAACAGTGACATT+TGG - contig302end:41667-41686 None:intergenic 50.0%
TGTCGGACTCATTGTATGCG+AGG + contig302end:41192-41211 MsG0080048402.01.T01:CDS 50.0%
TTCAAGCTTCTCTCAGGGGA+GGG + contig302end:38042-38061 MsG0080048402.01.T01:intron 50.0%
TTCGGTCGGTGTATCTGTCT+TGG + contig302end:40686-40705 MsG0080048402.01.T01:intron 50.0%
! CAAGAGGAGGAGTACGATCA+TGG + contig302end:39332-39351 MsG0080048402.01.T01:intron 50.0%
! CTTGCCGCTTCATTGTTTGG+CGG + contig302end:41472-41491 MsG0080048402.01.T01:CDS 50.0%
! GCAAGCTTCTGCGTCTTTTC+TGG - contig302end:41457-41476 None:intergenic 50.0%
! GGAGGTAACTTTGATGGCAC+AGG - contig302end:41137-41156 None:intergenic 50.0%
! TGTGCCCATTAAAGCATCCG+GGG + contig302end:41591-41610 MsG0080048402.01.T01:CDS 50.0%
! TTTGATGGCACAGGAGCCTT+TGG - contig302end:41128-41147 None:intergenic 50.0%
ACTCTCTCAGTCACGCGCAA+CGG - contig302end:39051-39070 None:intergenic 55.0%
AGCGCGTTGCTGCAAATCAG+TGG - contig302end:39684-39703 None:intergenic 55.0%
CACTGGAACAAGGTCAGTCG+TGG - contig302end:41174-41193 None:intergenic 55.0%
CCCCACTTTCTATAGCCTGC+TGG - contig302end:40990-41009 None:intergenic 55.0%
GACTCACCAGATCACGTCAG+TGG + contig302end:41216-41235 MsG0080048402.01.T01:intron 55.0%
GCTCTCCCCGGATGCTTTAA+TGG - contig302end:41599-41618 None:intergenic 55.0%
GGCCCTATAATTAGGGACGG+AGG + contig302end:38822-38841 MsG0080048402.01.T01:intron 55.0%
GGCGGCTATAACTCTGCAAG+TGG + contig302end:41828-41847 MsG0080048402.01.T01:intron 55.0%
TCAAGCTTCTCTCAGGGGAG+GGG + contig302end:38043-38062 MsG0080048402.01.T01:intron 55.0%
TGCATGAATGGGTCCACGGT+GGG - contig302end:41686-41705 None:intergenic 55.0%
TTGCATGAATGGGTCCACGG+TGG - contig302end:41687-41706 None:intergenic 55.0%
TTTACGTGGTTGGACCCGTG+CGG - contig302end:37086-37105 None:intergenic 55.0%
! CTCTGCGATCTTGCCGTTTC+TGG - contig302end:39234-39253 None:intergenic 55.0%
! TTGTTGATTGGGGCTCTCCC+CGG - contig302end:41611-41630 None:intergenic 55.0%
CAGATGGGTGTGACCCCAAC+TGG + contig302end:41983-42002 MsG0080048402.01.T01:CDS 60.0%
GCATGAATGGGTCCACGGTG+GGG - contig302end:41685-41704 None:intergenic 60.0%
! AGCAGCTGTCAGAGGCACAC+GGG + contig302end:41878-41897 MsG0080048402.01.T01:intron 60.0%
! CAGCAGCTGTCAGAGGCACA+CGG + contig302end:41877-41896 MsG0080048402.01.T01:intron 60.0%
!! AGAGAACGAGCGCTCTGGAG+CGG + contig302end:41026-41045 MsG0080048402.01.T01:CDS 60.0%
!! AGTGAACAGAGTGGTGGCGG+CGG + contig302end:41810-41829 MsG0080048402.01.T01:intron 60.0%
!! TGGTGCTGCAGACAGACCTC+AGG + contig302end:41552-41571 MsG0080048402.01.T01:CDS 60.0%
CATGACCCGTGCTACCGCAC+GGG + contig302end:37069-37088 MsG0080048402.01.T01:intron 65.0%
CCATGACCCGTGCTACCGCA+CGG + contig302end:37068-37087 MsG0080048402.01.T01:intron 65.0%
GTCACTGTTGCACCCCACCG+TGG + contig302end:41670-41689 MsG0080048402.01.T01:CDS 65.0%
GTTGGACCCGTGCGGTAGCA+CGG - contig302end:37078-37097 None:intergenic 65.0%
TCACGCGCAACGGTGCAGGA+AGG - contig302end:39041-39060 None:intergenic 65.0%
TCAGTCACGCGCAACGGTGC+AGG - contig302end:39045-39064 None:intergenic 65.0%
TTGGACCCGTGCGGTAGCAC+GGG - contig302end:37077-37096 None:intergenic 65.0%
CCGTGCGGTAGCACGGGTCA+TGG - contig302end:37071-37090 None:intergenic 70.0%
CGCGCAACGGTGCAGGAAGG+CGG - contig302end:39038-39057 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig302end gene 36596 42042 36596 ID=MsG0080048402.01;Name=MsG0080048402.01
contig302end mRNA 36596 42042 36596 ID=MsG0080048402.01.T01;Parent=MsG0080048402.01;Name=MsG0080048402.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0.16|0|0.85|1|1|7|0|401
contig302end exon 36596 36871 36596 ID=MsG0080048402.01.T01:exon:3598;Parent=MsG0080048402.01.T01
contig302end exon 39534 39595 39534 ID=MsG0080048402.01.T01:exon:3599;Parent=MsG0080048402.01.T01
contig302end exon 39695 39785 39695 ID=MsG0080048402.01.T01:exon:3600;Parent=MsG0080048402.01.T01
contig302end exon 40952 41047 40952 ID=MsG0080048402.01.T01:exon:3601;Parent=MsG0080048402.01.T01
contig302end exon 41131 41234 41131 ID=MsG0080048402.01.T01:exon:3602;Parent=MsG0080048402.01.T01
contig302end exon 41327 41740 41327 ID=MsG0080048402.01.T01:exon:3603;Parent=MsG0080048402.01.T01
contig302end exon 41880 42042 41880 ID=MsG0080048402.01.T01:exon:3604;Parent=MsG0080048402.01.T01
contig302end CDS 36596 36871 36596 ID=MsG0080048402.01.T01:cds;Parent=MsG0080048402.01.T01
contig302end CDS 39534 39595 39534 ID=MsG0080048402.01.T01:cds;Parent=MsG0080048402.01.T01
contig302end CDS 39695 39785 39695 ID=MsG0080048402.01.T01:cds;Parent=MsG0080048402.01.T01
contig302end CDS 40952 41047 40952 ID=MsG0080048402.01.T01:cds;Parent=MsG0080048402.01.T01
contig302end CDS 41131 41234 41131 ID=MsG0080048402.01.T01:cds;Parent=MsG0080048402.01.T01
contig302end CDS 41327 41740 41327 ID=MsG0080048402.01.T01:cds;Parent=MsG0080048402.01.T01
contig302end CDS 41880 42042 41880 ID=MsG0080048402.01.T01:cds;Parent=MsG0080048402.01.T01
Gene Sequence

>MsG0080048402.01.T01

ATGTATTTTCTCATGCAGCCAACAAATATCCTTCTTGGTCAAACTTTGAGGCAAAACTATCAGATTTTGGATTATCTAAAGTTATTGATAGGTGAAACATATGCTAGTTCAGAAGTGAGAGGAACTTTTGGATATGTGGATCCTGAATATCAAAGCAACCACCATGTAAATTCATCTGGTGATGTTTACAGTTTTGGCATGGTACTTCTACAAATTCTCTCTGGAAAAAGGGTCATAAATTTGAAACTGAAGAGACCAATGTCACTTAGTAAAATGGTGGATAGGTTTTTATTGTTGATGAAAAGTAGAGTCCTGTATTTGTTTATGCTGAAATTTGACAACGCGCTTATGATTACAACTGTTATTGGTTTGGATGCACGGGCTGTTGAAGCAATATTGCCACATGATGCCAGTTGCGAAGACATTGAGGTGGATAAGAATCTGTCTTTCCTCAATGATTATATCCAGCAGGCTATAGAAAGTGGGGCTATGCCCTACATATCAGAGAACGAGCGCTCTGGAGCGGCTCCTGTGCCATCAAAGTTACCTCCAGTTTCACTATCATCCACGACTGACCTTGTTCCAGTGTCGGACTCATTGTATGCGAGGAGACTCACCAGATCACGTCACATCATCATCCTCAAATTCTACTGCCCAAATCCAGTGAATGGCATGACAAAGGTGGATGTTGCAACTAGTGTAAATTCAAAAGTACGTGATAGCTACGATTCAAGAAAGCAACAGAATGAAATTGATCCAGAAAAGACGCAGAAGCTTGCCGCTTCATTGTTTGGCGGTTCTACTAAACCTGAGAGAAGAACATCAACTAGCAGCAAGGTTCCAAAAGCTAATGTTGGTGCTGCAGACAGACCTCAGGATTCAAAAGCTGCAGTTGTGCCCATTAAAGCATCCGGGGAGAGCCCCAATCAACAATCTCCTCCACAAGATTTGCTTGACTTGGGTGAACCAAATGTCACTGTTGCACCCCACCGTGGACCCATTCATGCAACTAGAAGGATCTTGACCCAAGCATTAGTTCTACACAGCTGTCAGAGGCACACGGGAGAAACAATTCCGTCGCCCGTATCACAATCTGTGAAGGGTGCTAATGCTAAAGATTCTTTGGAGAAGGATGCAAAAGTCAGGCAGATGGGTGTGACCCCAACTGGACAGAATCCCAACTTGTTCAGAGACTTGCTTGGCTAA

Protein sequence

>MsG0080048402.01.T01

MYFLMQPTNILLGQTLRQNYQILDYLKLLIGETYASSEVRGTFGYVDPEYQSNHHVNSSGDVYSFGMVLLQILSGKRVINLKLKRPMSLSKMVDRFLLLMKSRVLYLFMLKFDNALMITTVIGLDARAVEAILPHDASCEDIEVDKNLSFLNDYIQQAIESGAMPYISENERSGAAPVPSKLPPVSLSSTTDLVPVSDSLYARRLTRSRHIIILKFYCPNPVNGMTKVDVATSVNSKVRDSYDSRKQQNEIDPEKTQKLAASLFGGSTKPERRTSTSSKVPKANVGAADRPQDSKAAVVPIKASGESPNQQSPPQDLLDLGEPNVTVAPHRGPIHATRRILTQALVLHSCQRHTGETIPSPVSQSVKGANAKDSLEKDAKVRQMGVTPTGQNPNLFRDLLG*