AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048178.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048178.01.T01 MTR_7g095710 82.867 607 22 4 1 525 112 718 0.0 988
MsG0080048178.01.T01 MTR_6g016470 55.501 609 186 8 1 525 80 687 0.0 609
MsG0080048178.01.T01 MTR_2g105830 45.455 605 246 10 1 525 145 745 1.76e-158 473
MsG0080048178.01.T01 MTR_4g008170 46.358 604 241 9 1 525 156 755 3.04e-154 469
MsG0080048178.01.T01 MTR_8g013810 65.854 369 101 4 1 344 79 447 5.13e-152 444
MsG0080048178.01.T01 MTR_4g008170 45.840 613 238 11 1 525 156 762 7.18e-149 455
MsG0080048178.01.T01 MTR_2g038310 43.927 601 256 8 3 525 145 742 3.07e-142 435
MsG0080048178.01.T01 MTR_2g038310 43.927 601 256 8 3 525 145 742 4.01e-141 434
MsG0080048178.01.T01 MTR_4g008650 39.535 602 274 14 1 525 103 691 5.93e-124 383
MsG0080048178.01.T01 MTR_4g008650 39.268 601 277 13 1 525 103 691 1.05e-121 382
MsG0080048178.01.T01 MTR_8g090125 38.512 605 278 14 1 525 59 649 1.63e-116 367
MsG0080048178.01.T01 MTR_0005s0140 36.694 605 292 12 1 525 21 614 3.59e-116 365
MsG0080048178.01.T01 MTR_3g103070 39.934 606 269 13 1 525 106 697 3.68e-116 367
MsG0080048178.01.T01 MTR_4g043690 36.694 605 292 12 1 525 106 699 1.53e-115 366
MsG0080048178.01.T01 MTR_5g015590 38.769 601 281 13 1 525 105 694 8.16e-114 355
MsG0080048178.01.T01 MTR_5g015590 38.769 601 281 13 1 525 105 694 3.01e-113 355
MsG0080048178.01.T01 MTR_4g096990 39.535 602 273 13 1 525 105 692 2.04e-112 357
MsG0080048178.01.T01 MTR_5g015590 38.769 601 281 13 1 525 105 694 3.30e-112 355
MsG0080048178.01.T01 MTR_5g015590 38.769 601 281 13 1 525 105 694 1.42e-111 355
MsG0080048178.01.T01 MTR_3g103070 41.922 489 211 10 96 525 47 521 1.41e-101 325
MsG0080048178.01.T01 MTR_8g446010 34.050 605 303 13 1 525 59 647 4.82e-93 305
MsG0080048178.01.T01 MTR_8g045070 34.820 583 305 13 1 525 59 624 2.16e-92 303
MsG0080048178.01.T01 MTR_5g097270 29.382 599 328 18 1 524 110 688 8.24e-58 208
MsG0080048178.01.T01 MTR_8g013780 41.079 241 81 5 344 525 1 239 1.47e-47 174
MsG0080048178.01.T01 MTR_4g014480 26.486 589 346 17 1 524 66 632 7.99e-36 143
MsG0080048178.01.T01 MTR_3g103270 29.977 427 227 13 20 400 41 441 3.74e-32 132
MsG0080048178.01.T01 MTR_7g100110 30.939 362 199 11 34 352 47 400 1.32e-31 130
MsG0080048178.01.T01 MTR_8g027160 30.641 359 200 10 34 352 35 384 4.17e-31 128
MsG0080048178.01.T01 MTR_8g027160 30.641 359 200 10 34 352 35 384 4.77e-31 128
MsG0080048178.01.T01 MTR_8g027160 30.641 359 200 10 34 352 35 384 8.39e-31 127
MsG0080048178.01.T01 MTR_8g027160 30.641 359 200 10 34 352 35 384 1.86e-30 127
MsG0080048178.01.T01 MTR_3g108800 27.778 432 245 14 112 519 133 521 8.27e-30 124
MsG0080048178.01.T01 MTR_3g108800 27.778 432 245 14 112 519 132 520 1.22e-29 124
MsG0080048178.01.T01 MTR_7g117500 25.479 522 317 16 34 519 43 528 7.90e-29 121
MsG0080048178.01.T01 MTR_7g117500 25.479 522 317 16 34 519 43 528 1.03e-28 121
MsG0080048178.01.T01 MTR_2g449840 25.995 427 259 12 112 519 134 522 2.89e-28 120
MsG0080048178.01.T01 MTR_4g116950 26.559 433 249 13 112 519 134 522 8.39e-28 118
MsG0080048178.01.T01 MTR_2g104860 26.790 433 248 14 112 519 131 519 2.03e-27 117
MsG0080048178.01.T01 MTR_1g009720 25.761 427 260 12 112 519 133 521 2.37e-27 117
MsG0080048178.01.T01 MTR_2g036650 25.740 439 246 12 112 519 138 527 3.07e-27 117
MsG0080048178.01.T01 MTR_8g063880 26.402 428 256 13 112 519 133 521 4.53e-27 116
MsG0080048178.01.T01 MTR_1g009760 25.176 425 265 12 112 519 136 524 4.70e-27 116
MsG0080048178.01.T01 MTR_1g009760 25.176 425 265 12 112 519 133 521 7.78e-27 115
MsG0080048178.01.T01 MTR_4g107500 26.218 431 253 13 112 519 137 525 8.41e-27 115
MsG0080048178.01.T01 MTR_6g011310 26.555 418 263 12 112 519 135 518 5.23e-26 113
MsG0080048178.01.T01 MTR_6g011310 26.230 427 258 13 112 519 135 523 6.75e-26 112
MsG0080048178.01.T01 MTR_4g127710 25.641 429 258 13 112 519 136 524 7.15e-26 112
MsG0080048178.01.T01 MTR_4g127710 25.641 429 258 13 112 519 136 524 7.57e-26 112
MsG0080048178.01.T01 MTR_8g006790 25.176 425 265 12 112 519 141 529 1.25e-24 108
MsG0080048178.01.T01 MTR_8g089870 24.708 514 294 19 59 515 77 554 8.73e-17 84.3
MsG0080048178.01.T01 MTR_5g052190 43.210 81 45 1 387 467 282 361 6.87e-13 72.0
MsG0080048178.01.T01 MTR_4g008640 50.000 56 28 0 465 520 115 170 8.53e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048178.01.T01 AT3G63380 61.046 593 161 7 1 525 96 686 0.0 621
MsG0080048178.01.T01 AT3G22910 55.872 596 188 8 1 525 91 682 0.0 588
MsG0080048178.01.T01 AT4G29900 45.757 601 246 8 3 525 126 724 1.41e-154 469
MsG0080048178.01.T01 AT4G29900 45.757 601 246 8 3 525 126 724 1.41e-154 469
MsG0080048178.01.T01 AT5G57110 44.352 602 253 7 1 525 124 720 7.50e-152 462
MsG0080048178.01.T01 AT5G57110 44.352 602 253 7 1 525 124 720 7.50e-152 462
MsG0080048178.01.T01 AT5G57110 44.352 602 253 7 1 525 124 720 7.50e-152 462
MsG0080048178.01.T01 AT3G21180 44.776 603 252 9 1 525 138 737 2.44e-147 451
MsG0080048178.01.T01 AT3G57330 39.535 602 269 14 1 525 48 631 6.36e-126 392
MsG0080048178.01.T01 AT3G57330 39.535 602 269 14 1 525 103 686 1.17e-125 392
MsG0080048178.01.T01 AT2G41560 38.386 607 272 14 1 525 1 587 8.04e-120 375
MsG0080048178.01.T01 AT2G41560 38.386 607 272 14 1 525 1 587 8.04e-120 375
MsG0080048178.01.T01 AT2G41560 38.386 607 272 14 1 525 1 587 8.04e-120 375
MsG0080048178.01.T01 AT2G41560 38.386 607 272 14 1 525 103 689 6.12e-119 375
MsG0080048178.01.T01 AT1G27770 39.303 603 277 11 1 525 43 634 1.76e-113 358
MsG0080048178.01.T01 AT1G27770 39.303 603 277 11 1 525 106 697 5.55e-113 358
MsG0080048178.01.T01 AT1G27770 39.303 603 277 11 1 525 106 697 5.55e-113 358
MsG0080048178.01.T01 AT4G37640 38.678 605 277 10 1 525 104 694 5.34e-112 356
MsG0080048178.01.T01 AT2G22950 38.614 606 277 15 1 525 104 695 2.59e-111 354
MsG0080048178.01.T01 AT1G27770 39.057 530 253 10 1 471 106 624 4.70e-93 304
MsG0080048178.01.T01 AT5G53010 31.826 597 330 8 1 525 150 741 9.37e-83 273
MsG0080048178.01.T01 AT5G53010 29.617 601 326 12 1 525 150 729 2.69e-67 235
MsG0080048178.01.T01 AT4G00900 32.418 364 191 12 34 352 30 383 3.35e-33 135
MsG0080048178.01.T01 AT4G00900 32.418 364 191 12 34 352 30 383 3.35e-33 135
MsG0080048178.01.T01 AT1G07810 31.215 362 196 11 34 352 47 398 3.30e-32 132
MsG0080048178.01.T01 AT1G07670 31.215 362 196 11 34 352 47 398 4.14e-32 132
MsG0080048178.01.T01 AT1G07670 31.215 362 196 11 34 352 47 398 4.14e-32 132
MsG0080048178.01.T01 AT3G60330 25.560 536 299 18 34 519 37 522 3.23e-31 129
MsG0080048178.01.T01 AT3G60330 25.560 536 299 18 34 519 37 522 3.23e-31 129
MsG0080048178.01.T01 AT3G60330 25.373 536 300 18 34 519 37 522 7.73e-31 128
MsG0080048178.01.T01 AT3G60330 25.373 536 300 18 34 519 37 522 7.73e-31 128
MsG0080048178.01.T01 AT1G10130 29.577 426 231 13 23 405 16 415 2.49e-30 126
MsG0080048178.01.T01 AT2G18960 28.074 431 245 13 112 519 67 455 1.19e-29 124
MsG0080048178.01.T01 AT2G18960 28.074 431 245 13 112 519 67 455 1.19e-29 124
MsG0080048178.01.T01 AT2G18960 28.074 431 245 13 112 519 131 519 1.46e-29 124
MsG0080048178.01.T01 AT5G57350 27.378 431 248 13 112 519 132 520 3.46e-29 122
MsG0080048178.01.T01 AT5G57350 27.378 431 248 13 112 519 132 520 3.46e-29 122
MsG0080048178.01.T01 AT5G57350 27.378 431 248 13 112 519 132 520 3.46e-29 122
MsG0080048178.01.T01 AT2G24520 26.761 426 257 13 112 519 113 501 8.82e-29 121
MsG0080048178.01.T01 AT2G24520 26.761 426 257 13 112 519 113 501 8.82e-29 121
MsG0080048178.01.T01 AT2G24520 26.761 426 257 13 112 519 176 564 9.84e-29 121
MsG0080048178.01.T01 AT4G30190 28.000 425 253 13 112 519 131 519 1.46e-28 120
MsG0080048178.01.T01 AT4G30190 28.000 425 253 13 112 519 131 519 1.59e-28 120
MsG0080048178.01.T01 AT3G42640 25.551 544 295 19 34 524 37 523 5.88e-27 116
MsG0080048178.01.T01 AT5G62670 25.761 427 260 13 112 519 135 523 1.74e-26 114
MsG0080048178.01.T01 AT1G80660 26.005 423 264 12 112 519 7 395 2.84e-26 114
MsG0080048178.01.T01 AT1G80660 25.287 435 252 13 112 519 136 524 2.90e-26 114
MsG0080048178.01.T01 AT1G80660 25.768 423 265 12 112 519 136 524 3.09e-26 114
MsG0080048178.01.T01 AT1G17260 25.647 425 263 12 112 519 139 527 3.37e-26 114
MsG0080048178.01.T01 AT1G80660 25.057 435 253 13 112 519 136 524 3.44e-26 113
MsG0080048178.01.T01 AT2G07560 24.942 429 261 11 112 519 134 522 1.55e-25 111
MsG0080048178.01.T01 AT3G47950 24.824 427 264 12 112 519 139 527 1.43e-24 108
MsG0080048178.01.T01 AT3G47950 24.824 427 264 12 112 519 139 527 1.43e-24 108
MsG0080048178.01.T01 AT5G57350 29.200 250 153 7 286 519 17 258 1.33e-18 89.7
MsG0080048178.01.T01 AT2G24520 27.600 250 157 6 286 519 17 258 1.54e-17 86.7
MsG0080048178.01.T01 AT4G11730 24.789 355 218 10 112 456 132 447 2.18e-16 83.2

Find 93 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAGTCCTTAACTGAGTT+TGG 0.249267 contig236end:-22142 MsG0080048178.01.T01:CDS
ACTTTCAGCTTGTGAAACTA+TGG 0.298547 contig236end:-21137 MsG0080048178.01.T01:CDS
TTCTTCTAGTGTTGTTAATT+CGG 0.316776 contig236end:-21375 MsG0080048178.01.T01:CDS
TGGAACAACTCAAGAACTTT+TGG 0.332942 contig236end:+20995 None:intergenic
CTTCCAATGATTCCCTTTGT+TGG 0.333542 contig236end:+22082 None:intergenic
ACAAAATGTAAAAGACCTTT+TGG 0.340140 contig236end:+21998 None:intergenic
ACATGATGAGAAAGGGAATA+AGG 0.342848 contig236end:-21335 MsG0080048178.01.T01:CDS
TCCACAGCTTTCTTAGTGTT+TGG 0.343135 contig236end:+20454 None:intergenic
ATTCATAACATCGTTTATAT+CGG 0.348604 contig236end:+21294 None:intergenic
ATCATTCTTCTTGTTTGTGC+TGG 0.353362 contig236end:-21947 MsG0080048178.01.T01:CDS
AACGAAGCGGTGTTGCTATA+AGG 0.354148 contig236end:-20786 MsG0080048178.01.T01:CDS
TTTCCAACAAAGGGAATCAT+TGG 0.361980 contig236end:-22085 MsG0080048178.01.T01:CDS
TATTGAGTCCTATCCCTTGT+TGG 0.366939 contig236end:+20975 None:intergenic
GAAGGTGTTGGACATGTTCT+TGG 0.367950 contig236end:-22112 MsG0080048178.01.T01:CDS
AAAGTTGAAGTTGTGAGAAA+TGG 0.379054 contig236end:-21766 MsG0080048178.01.T01:CDS
TTTCTCATCATGTGAGTTAC+CGG 0.383047 contig236end:+21345 None:intergenic
TTCTTAGTGTTTGGTCTGCA+TGG 0.388331 contig236end:+20463 None:intergenic
TTGACATTGCTTGGTATTGT+TGG 0.406421 contig236end:-20496 MsG0080048178.01.T01:CDS
ACTGAGTTTGGAGGAGTTGA+AGG 0.409047 contig236end:-22130 MsG0080048178.01.T01:CDS
CATCAAATGCTTAGAGAAGA+TGG 0.409715 contig236end:-20520 MsG0080048178.01.T01:CDS
CATCCCTGAGGGTTTGCCAT+TGG 0.412027 contig236end:-21224 MsG0080048178.01.T01:CDS
CTTGGAACATTTCCAACAAA+GGG 0.418051 contig236end:-22094 MsG0080048178.01.T01:CDS
TCGAGACGGCTCGAGTTGTT+CGG 0.422005 contig236end:-22046 MsG0080048178.01.T01:CDS
TTCAAGACCAAGACAAAACT+TGG 0.430220 contig236end:+21051 None:intergenic
CAAACTTGCTGATATGGTTA+AGG 0.439891 contig236end:-22173 None:intergenic
GAAGATGGATTGACATTGCT+TGG 0.448536 contig236end:-20505 MsG0080048178.01.T01:CDS
CACCTCATACCAACCTTCCC+TGG 0.448571 contig236end:+21893 None:intergenic
ACAACAGCGTTCACGTGCAT+TGG 0.450477 contig236end:-20750 MsG0080048178.01.T01:CDS
ACCTCTTCGATTGGAAAGGT+TGG 0.454559 contig236end:-21418 MsG0080048178.01.T01:CDS
AACTCCTCCAAACTCAGTTA+AGG 0.459202 contig236end:+22135 None:intergenic
GTTATCTGCACTGATAAAAC+AGG 0.462331 contig236end:-21103 MsG0080048178.01.T01:CDS
GCTTGGTATTGTTGGCCTCA+AGG 0.473819 contig236end:-20488 MsG0080048178.01.T01:CDS
ACAGCCAATGGCAAACCCTC+AGG 0.480432 contig236end:+21220 None:intergenic
GGGATAGGACTCAATACAAC+TGG 0.480556 contig236end:-20968 MsG0080048178.01.T01:intron
TACTCGTTCTTCTTCGTCAA+GGG 0.484520 contig236end:+20660 None:intergenic
AAAATTGAGAGAACCATTCA+AGG 0.484847 contig236end:-20638 MsG0080048178.01.T01:intron
TTTGGAGGAGTTGAAGGTGT+TGG 0.486880 contig236end:-22124 MsG0080048178.01.T01:CDS
AAGTCCTTAACTGAGTTTGG+AGG 0.494300 contig236end:-22139 MsG0080048178.01.T01:CDS
GACAAGTTAACCTCTTCGAT+TGG 0.496811 contig236end:-21427 MsG0080048178.01.T01:CDS
AGTTAAATGTTTCAACATGA+AGG 0.506064 contig236end:+20818 None:intergenic
ACTAGCAGCCATACCTTGAA+TGG 0.515056 contig236end:+20625 None:intergenic
GGTATAAAAGAACATGGACC+AGG 0.517553 contig236end:-21911 MsG0080048178.01.T01:CDS
CTTTCAGCTTGTGAAACTAT+GGG 0.519163 contig236end:-21136 MsG0080048178.01.T01:CDS
TTGTTAATTCGGTATTTCAC+CGG 0.522783 contig236end:-21364 MsG0080048178.01.T01:CDS
GAGTTGTTCCAACAAGGGAT+AGG 0.522823 contig236end:-20983 MsG0080048178.01.T01:CDS
GTGGAAACTTGCAAAGCTGC+AGG 0.523844 contig236end:-20436 MsG0080048178.01.T01:CDS
GTGGTCGTTGCCATCCCTGA+GGG 0.533218 contig236end:-21235 MsG0080048178.01.T01:CDS
GACCAGGGAAGGTTGGTATG+AGG 0.539167 contig236end:-21895 MsG0080048178.01.T01:intron
GTTAACCTCTTCGATTGGAA+AGG 0.543977 contig236end:-21422 MsG0080048178.01.T01:CDS
TTACTCCATGAAAAGAATGA+TGG 0.544747 contig236end:-21182 MsG0080048178.01.T01:CDS
AAAGGGAATAAGGAATTTCG+AGG 0.549749 contig236end:-21325 MsG0080048178.01.T01:CDS
CGATAACATATTCACTGCTA+AGG 0.549853 contig236end:-20389 MsG0080048178.01.T01:CDS
TTGTCGAGGCGTGCTTGTAA+CGG 0.550021 contig236end:+21445 None:intergenic
GATGTTGTGTCTCTCAAGAT+TGG 0.550678 contig236end:-21703 MsG0080048178.01.T01:CDS
TCTTGGAACATTTCCAACAA+AGG 0.551511 contig236end:-22095 MsG0080048178.01.T01:CDS
GTTCTTGAGTTGTTCCAACA+AGG 0.551602 contig236end:-20989 MsG0080048178.01.T01:CDS
TTCCGGCGCAAAGTTGTCGA+TGG 0.553697 contig236end:-21559 MsG0080048178.01.T01:CDS
GTGGACGAATCTAGCATGAC+AGG 0.554098 contig236end:-21631 MsG0080048178.01.T01:CDS
GGTAACTCACATGATGAGAA+AGG 0.554188 contig236end:-21343 MsG0080048178.01.T01:CDS
ATCAGGTTATTCGTTGCAAG+TGG 0.554305 contig236end:-21650 MsG0080048178.01.T01:CDS
TTACTCGTTCTTCTTCGTCA+AGG 0.555550 contig236end:+20659 None:intergenic
GGTGATCAAATTCCAGCTGA+TGG 0.555778 contig236end:-21682 MsG0080048178.01.T01:CDS
GAACATGGACCAGGGAAGGT+TGG 0.556667 contig236end:-21902 MsG0080048178.01.T01:CDS
TTCTTGAGTTGTTCCAACAA+GGG 0.564125 contig236end:-20988 MsG0080048178.01.T01:CDS
CAGATGCTTGTAACATCTGT+GGG 0.571667 contig236end:-21529 MsG0080048178.01.T01:CDS
GTAACTCACATGATGAGAAA+GGG 0.572303 contig236end:-21342 MsG0080048178.01.T01:CDS
ACAAACTATATTGATAGTAA+TGG 0.572318 contig236end:-20694 MsG0080048178.01.T01:CDS
AGAGTGAGTGTCACAGCCAA+TGG 0.572339 contig236end:+21208 None:intergenic
AAAAGAACATGGACCAGGGA+AGG 0.575728 contig236end:-21906 MsG0080048178.01.T01:CDS
GTTGAAATTAAGATGATCAC+CGG 0.583984 contig236end:-20412 MsG0080048178.01.T01:CDS
AGCGTTCACGTGCATTGGAA+AGG 0.585112 contig236end:-20745 MsG0080048178.01.T01:CDS
AGCAGTGAATATGTTATCGC+CGG 0.592625 contig236end:+20393 None:intergenic
CAATGGCAAACCCTCAGGGA+TGG 0.594427 contig236end:+21225 None:intergenic
TGCGGCTGCAGTCACTATTG+TGG 0.595274 contig236end:-21254 MsG0080048178.01.T01:CDS
ATCCATCGACAACTTTGCGC+CGG 0.606523 contig236end:+21557 None:intergenic
TCGAAGAGGTTAACTTGTCG+AGG 0.612007 contig236end:+21431 None:intergenic
TCTCATTTGATTCAATGTCA+AGG 0.612008 contig236end:+21078 None:intergenic
TTAAAGGCTCAATCTCTACA+TGG 0.614114 contig236end:+21599 None:intergenic
AACTCAGAAAAGAAACGAAG+CGG 0.615876 contig236end:-20799 MsG0080048178.01.T01:CDS
TATTGATTTAGGTATGGACA+TGG 0.620961 contig236end:-20866 MsG0080048178.01.T01:intron
CAGCCAATGGCAAACCCTCA+GGG 0.622410 contig236end:+21221 None:intergenic
TGTGGTCGTTGCCATCCCTG+AGG 0.627513 contig236end:-21236 MsG0080048178.01.T01:CDS
TCCAACCTTTCCAATCGAAG+AGG 0.628030 contig236end:+21417 None:intergenic
TTGAAGTTGTGAGAAATGGA+AGG 0.633334 contig236end:-21762 MsG0080048178.01.T01:CDS
TCAGATGCTTGTAACATCTG+TGG 0.634658 contig236end:-21530 MsG0080048178.01.T01:CDS
TTCTGTTGTGAGTATCGTTG+CGG 0.635865 contig236end:-21272 MsG0080048178.01.T01:CDS
ACCAAACACTAAGAAAGCTG+TGG 0.654204 contig236end:-20455 MsG0080048178.01.T01:CDS
AATGATGGCAGATCATGCTA+TGG 0.667862 contig236end:-21167 MsG0080048178.01.T01:CDS
GTATAAAAGAACATGGACCA+GGG 0.681963 contig236end:-21910 MsG0080048178.01.T01:CDS
GTGCAGATGATATTTCGAGA+CGG 0.692212 contig236end:-22060 MsG0080048178.01.T01:CDS
ATATTGATAGTAATGGCGTG+AGG 0.714007 contig236end:-20687 MsG0080048178.01.T01:CDS
TTGGTCTGCATGGATCCTTG+AGG 0.732996 contig236end:+20473 None:intergenic
TGGCAGATCATGCTATGGTG+AGG 0.739078 contig236end:-21162 MsG0080048178.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAACATCGTTTATAT+CGG + contig236end:21232-21251 None:intergenic 20.0%
!! GATATGATTATATGATCAAA+AGG - contig236end:21969-21988 MsG0080048178.01.T01:CDS 20.0%
!! TGATCATATAATCATATCTT+CGG + contig236end:21967-21986 None:intergenic 20.0%
!!! ACAAACTATATTGATAGTAA+TGG - contig236end:21829-21848 MsG0080048178.01.T01:intron 20.0%
!!! ATGTTCTTTTATACCAAAAA+GGG + contig236end:20607-20626 None:intergenic 20.0%
! AGTTAAATGTTTCAACATGA+AGG + contig236end:21708-21727 None:intergenic 25.0%
! TCAAAAATTGATATCTGTTG+AGG + contig236end:20787-20806 None:intergenic 25.0%
!! ACAAAATGTAAAAGACCTTT+TGG + contig236end:20528-20547 None:intergenic 25.0%
!! ATCAATTTTTGATGTTCTTG+TGG - contig236end:20795-20814 MsG0080048178.01.T01:CDS 25.0%
!! CATGTTCTTTTATACCAAAA+AGG + contig236end:20608-20627 None:intergenic 25.0%
!! TCAATTTTTGATGTTCTTGT+GGG - contig236end:20796-20815 MsG0080048178.01.T01:CDS 25.0%
!! TTCTTCTAGTGTTGTTAATT+CGG - contig236end:21148-21167 MsG0080048178.01.T01:CDS 25.0%
!!! CTTTTTGGTATAAAAGAACA+TGG - contig236end:20606-20625 MsG0080048178.01.T01:intron 25.0%
AAAATTGAGAGAACCATTCA+AGG - contig236end:21885-21904 MsG0080048178.01.T01:intron 30.0%
AAAGTTGAAGTTGTGAGAAA+TGG - contig236end:20757-20776 MsG0080048178.01.T01:CDS 30.0%
AACAAAAAAGGAGCTCTTAA+AGG + contig236end:20943-20962 None:intergenic 30.0%
GTTGAAATTAAGATGATCAC+CGG - contig236end:22111-22130 MsG0080048178.01.T01:CDS 30.0%
TCTCATTTGATTCAATGTCA+AGG + contig236end:21448-21467 None:intergenic 30.0%
TTACTCCATGAAAAGAATGA+TGG - contig236end:21341-21360 MsG0080048178.01.T01:CDS 30.0%
TTGTTAATTCGGTATTTCAC+CGG - contig236end:21159-21178 MsG0080048178.01.T01:CDS 30.0%
! AAATGTAAAAGACCTTTTGG+TGG + contig236end:20525-20544 None:intergenic 30.0%
! TGAAAACTTTTCCAATGCAA+TGG - contig236end:21503-21522 MsG0080048178.01.T01:CDS 30.0%
!! TATTGATTTAGGTATGGACA+TGG - contig236end:21657-21676 MsG0080048178.01.T01:CDS 30.0%
AAAGGGAATAAGGAATTTCG+AGG - contig236end:21198-21217 MsG0080048178.01.T01:CDS 35.0%
AACTCAGAAAAGAAACGAAG+CGG - contig236end:21724-21743 MsG0080048178.01.T01:CDS 35.0%
ACATGATGAGAAAGGGAATA+AGG - contig236end:21188-21207 MsG0080048178.01.T01:CDS 35.0%
ACTTTCAGCTTGTGAAACTA+TGG - contig236end:21386-21405 MsG0080048178.01.T01:CDS 35.0%
AGATCTGAACCTGAAATTTC+AGG - contig236end:21599-21618 MsG0080048178.01.T01:CDS 35.0%
CATCAAATGCTTAGAGAAGA+TGG - contig236end:22003-22022 MsG0080048178.01.T01:CDS 35.0%
CGATAACATATTCACTGCTA+AGG - contig236end:22134-22153 MsG0080048178.01.T01:CDS 35.0%
CTTGGAACATTTCCAACAAA+GGG - contig236end:20429-20448 MsG0080048178.01.T01:CDS 35.0%
CTTTCAGCTTGTGAAACTAT+GGG - contig236end:21387-21406 MsG0080048178.01.T01:CDS 35.0%
GATAAAAATACTCCATCAGC+TGG + contig236end:20856-20875 None:intergenic 35.0%
GATCTGAACCTGAAATTTCA+GGG - contig236end:21600-21619 MsG0080048178.01.T01:CDS 35.0%
GTAACTCACATGATGAGAAA+GGG - contig236end:21181-21200 MsG0080048178.01.T01:CDS 35.0%
GTATAAAAGAACATGGACCA+GGG - contig236end:20613-20632 MsG0080048178.01.T01:intron 35.0%
TCTTGGAACATTTCCAACAA+AGG - contig236end:20428-20447 MsG0080048178.01.T01:CDS 35.0%
TGTGGGAAAAAACACATCAT+GGG - contig236end:21011-21030 MsG0080048178.01.T01:CDS 35.0%
TTAAAGGCTCAATCTCTACA+TGG + contig236end:20927-20946 None:intergenic 35.0%
TTCAAGACCAAGACAAAACT+TGG + contig236end:21475-21494 None:intergenic 35.0%
TTGAAGTCCTTAACTGAGTT+TGG - contig236end:20381-20400 MsG0080048178.01.T01:CDS 35.0%
TTGAAGTTGTGAGAAATGGA+AGG - contig236end:20761-20780 MsG0080048178.01.T01:CDS 35.0%
TTGACATTGCTTGGTATTGT+TGG - contig236end:22027-22046 MsG0080048178.01.T01:CDS 35.0%
TTTCCAACAAAGGGAATCAT+TGG - contig236end:20438-20457 MsG0080048178.01.T01:CDS 35.0%
TTTCTCATCATGTGAGTTAC+CGG + contig236end:21181-21200 None:intergenic 35.0%
! ATATTGATAGTAATGGCGTG+AGG - contig236end:21836-21855 MsG0080048178.01.T01:intron 35.0%
! ATCATTCTTCTTGTTTGTGC+TGG - contig236end:20576-20595 MsG0080048178.01.T01:intron 35.0%
! ATCTGCCATCATTCTTTTCA+TGG + contig236end:21349-21368 None:intergenic 35.0%
! GTTATCTGCACTGATAAAAC+AGG - contig236end:21420-21439 MsG0080048178.01.T01:CDS 35.0%
! TCTAGCAGTTTTTCTTGTTG+TGG - contig236end:20663-20682 MsG0080048178.01.T01:CDS 35.0%
! TGGAACAACTCAAGAACTTT+TGG + contig236end:21531-21550 None:intergenic 35.0%
! TTCTTGAGTTGTTCCAACAA+GGG - contig236end:21535-21554 MsG0080048178.01.T01:CDS 35.0%
!! AATTTCAGGTTCAGATCTGA+TGG + contig236end:21597-21616 None:intergenic 35.0%
!! ATGTATTGCTTTTGCTCACA+CGG - contig236end:21929-21948 MsG0080048178.01.T01:CDS 35.0%
!! GCTGATGGAGTATTTTTATC+AGG - contig236end:20856-20875 MsG0080048178.01.T01:CDS 35.0%
AACTCCTCCAAACTCAGTTA+AGG + contig236end:20391-20410 None:intergenic 40.0%
AAGTCCTTAACTGAGTTTGG+AGG - contig236end:20384-20403 MsG0080048178.01.T01:CDS 40.0%
AATGATGGCAGATCATGCTA+TGG - contig236end:21356-21375 MsG0080048178.01.T01:CDS 40.0%
ACCAAACACTAAGAAAGCTG+TGG - contig236end:22068-22087 MsG0080048178.01.T01:CDS 40.0%
AGCAGTGAATATGTTATCGC+CGG + contig236end:22133-22152 None:intergenic 40.0%
ATCAGGTTATTCGTTGCAAG+TGG - contig236end:20873-20892 MsG0080048178.01.T01:intron 40.0%
ATGAGTATAGCTTTCTCCGT+TGG + contig236end:21629-21648 None:intergenic 40.0%
CAGATGCTTGTAACATCTGT+GGG - contig236end:20994-21013 MsG0080048178.01.T01:CDS 40.0%
CTGTGGGAAAAAACACATCA+TGG - contig236end:21010-21029 MsG0080048178.01.T01:CDS 40.0%
CTTCCAATGATTCCCTTTGT+TGG + contig236end:20444-20463 None:intergenic 40.0%
GACAAGTTAACCTCTTCGAT+TGG - contig236end:21096-21115 MsG0080048178.01.T01:CDS 40.0%
GATGTTGTGTCTCTCAAGAT+TGG - contig236end:20820-20839 MsG0080048178.01.T01:CDS 40.0%
GGAGAAAGCTATACTCATGT+GGG - contig236end:21631-21650 MsG0080048178.01.T01:CDS 40.0%
GGTAACTCACATGATGAGAA+AGG - contig236end:21180-21199 MsG0080048178.01.T01:CDS 40.0%
GGTATAAAAGAACATGGACC+AGG - contig236end:20612-20631 MsG0080048178.01.T01:intron 40.0%
GTGCAGATGATATTTCGAGA+CGG - contig236end:20463-20482 MsG0080048178.01.T01:CDS 40.0%
GTGGGAAAAAACACATCATG+GGG - contig236end:21012-21031 MsG0080048178.01.T01:CDS 40.0%
GTTAACCTCTTCGATTGGAA+AGG - contig236end:21101-21120 MsG0080048178.01.T01:CDS 40.0%
TACAAAAAGCCACCACCAAA+AGG - contig236end:20510-20529 MsG0080048178.01.T01:CDS 40.0%
TACTCGTTCTTCTTCGTCAA+GGG + contig236end:21866-21885 None:intergenic 40.0%
TATTGAGTCCTATCCCTTGT+TGG + contig236end:21551-21570 None:intergenic 40.0%
TCAGATGCTTGTAACATCTG+TGG - contig236end:20993-21012 MsG0080048178.01.T01:CDS 40.0%
TCCACAGCTTTCTTAGTGTT+TGG + contig236end:22072-22091 None:intergenic 40.0%
TGAGAGAACCATTCAAGGTA+TGG - contig236end:21890-21909 MsG0080048178.01.T01:intron 40.0%
TGAGTATAGCTTTCTCCGTT+GGG + contig236end:21628-21647 None:intergenic 40.0%
TTACTCGTTCTTCTTCGTCA+AGG + contig236end:21867-21886 None:intergenic 40.0%
TTCTTAGTGTTTGGTCTGCA+TGG + contig236end:22063-22082 None:intergenic 40.0%
! GTTCTTGAGTTGTTCCAACA+AGG - contig236end:21534-21553 MsG0080048178.01.T01:CDS 40.0%
! TGTAAAAGACCTTTTGGTGG+TGG + contig236end:20522-20541 None:intergenic 40.0%
! TTCTGTTGTGAGTATCGTTG+CGG - contig236end:21251-21270 MsG0080048178.01.T01:CDS 40.0%
!! AGAGTGACCAAGTTTTGTCT+TGG - contig236end:21465-21484 MsG0080048178.01.T01:CDS 40.0%
!! CATGTGGGCAGTATTGATTT+AGG - contig236end:21646-21665 MsG0080048178.01.T01:CDS 40.0%
!! GAAGATGGATTGACATTGCT+TGG - contig236end:22018-22037 MsG0080048178.01.T01:CDS 40.0%
!! GGGCAGTATTGATTTAGGTA+TGG - contig236end:21651-21670 MsG0080048178.01.T01:CDS 40.0%
!!! AACTTTTGGTGCCATTGCAT+TGG + contig236end:21517-21536 None:intergenic 40.0%
!!! GAGCTCCTTTTTTGTTGTTC+CGG - contig236end:20947-20966 MsG0080048178.01.T01:intron 40.0%
AAAAGAACATGGACCAGGGA+AGG - contig236end:20617-20636 MsG0080048178.01.T01:intron 45.0%
ACCTCTTCGATTGGAAAGGT+TGG - contig236end:21105-21124 MsG0080048178.01.T01:CDS 45.0%
ACTAGCAGCCATACCTTGAA+TGG + contig236end:21901-21920 None:intergenic 45.0%
ACTGAGTTTGGAGGAGTTGA+AGG - contig236end:20393-20412 MsG0080048178.01.T01:CDS 45.0%
CGGAGAAAGCTATACTCATG+TGG - contig236end:21630-21649 MsG0080048178.01.T01:CDS 45.0%
GAGTTGTTCCAACAAGGGAT+AGG - contig236end:21540-21559 MsG0080048178.01.T01:CDS 45.0%
GGGATAGGACTCAATACAAC+TGG - contig236end:21555-21574 MsG0080048178.01.T01:CDS 45.0%
GGTGATCAAATTCCAGCTGA+TGG - contig236end:20841-20860 MsG0080048178.01.T01:CDS 45.0%
TCCAACCTTTCCAATCGAAG+AGG + contig236end:21109-21128 None:intergenic 45.0%
TGAAATTTCAGGGAGCCCAA+CGG - contig236end:21610-21629 MsG0080048178.01.T01:CDS 45.0%
TTGCGCCGGAACAACAAAAA+AGG + contig236end:20955-20974 None:intergenic 45.0%
! TTCAGGTTCAGATCTGATGG+AGG + contig236end:21594-21613 None:intergenic 45.0%
! TTTGGAGGAGTTGAAGGTGT+TGG - contig236end:20399-20418 MsG0080048178.01.T01:CDS 45.0%
!! AACGAAGCGGTGTTGCTATA+AGG - contig236end:21737-21756 MsG0080048178.01.T01:CDS 45.0%
!! GAAGGTGTTGGACATGTTCT+TGG - contig236end:20411-20430 MsG0080048178.01.T01:CDS 45.0%
!! TCGAAGAGGTTAACTTGTCG+AGG + contig236end:21095-21114 None:intergenic 45.0%
!!! TGTGCTGGTCTTTCCCTTTT+TGG - contig236end:20591-20610 MsG0080048178.01.T01:intron 45.0%
ACAACAGCGTTCACGTGCAT+TGG - contig236end:21773-21792 MsG0080048178.01.T01:CDS 50.0%
AGAGTGAGTGTCACAGCCAA+TGG + contig236end:21318-21337 None:intergenic 50.0%
AGCGTTCACGTGCATTGGAA+AGG - contig236end:21778-21797 MsG0080048178.01.T01:CDS 50.0%
ATCCATCGACAACTTTGCGC+CGG + contig236end:20969-20988 None:intergenic 50.0%
GTGGAAACTTGCAAAGCTGC+AGG - contig236end:22087-22106 MsG0080048178.01.T01:CDS 50.0%
GTGGACGAATCTAGCATGAC+AGG - contig236end:20892-20911 MsG0080048178.01.T01:intron 50.0%
GTTGGGCTCCCTGAAATTTC+AGG + contig236end:21611-21630 None:intergenic 50.0%
TGGCAGATCATGCTATGGTG+AGG - contig236end:21361-21380 MsG0080048178.01.T01:CDS 50.0%
TTGGTCTGCATGGATCCTTG+AGG + contig236end:22053-22072 None:intergenic 50.0%
TTGTCGAGGCGTGCTTGTAA+CGG + contig236end:21081-21100 None:intergenic 50.0%
! GCTTGGTATTGTTGGCCTCA+AGG - contig236end:22035-22054 MsG0080048178.01.T01:CDS 50.0%
ACAGCCAATGGCAAACCCTC+AGG + contig236end:21306-21325 None:intergenic 55.0%
CAATGGCAAACCCTCAGGGA+TGG + contig236end:21301-21320 None:intergenic 55.0%
CACCTCATACCAACCTTCCC+TGG + contig236end:20633-20652 None:intergenic 55.0%
CAGCCAATGGCAAACCCTCA+GGG + contig236end:21305-21324 None:intergenic 55.0%
CATCCCTGAGGGTTTGCCAT+TGG - contig236end:21299-21318 MsG0080048178.01.T01:CDS 55.0%
GAACATGGACCAGGGAAGGT+TGG - contig236end:20621-20640 MsG0080048178.01.T01:intron 55.0%
TGCGGCTGCAGTCACTATTG+TGG - contig236end:21269-21288 MsG0080048178.01.T01:CDS 55.0%
TTCCGGCGCAAAGTTGTCGA+TGG - contig236end:20964-20983 MsG0080048178.01.T01:intron 55.0%
! TCGAGACGGCTCGAGTTGTT+CGG - contig236end:20477-20496 MsG0080048178.01.T01:CDS 55.0%
!! CAGGGAAGGTTGGTATGAGG+TGG - contig236end:20631-20650 MsG0080048178.01.T01:intron 55.0%
!! GACCAGGGAAGGTTGGTATG+AGG - contig236end:20628-20647 MsG0080048178.01.T01:intron 55.0%
GTGGTCGTTGCCATCCCTGA+GGG - contig236end:21288-21307 MsG0080048178.01.T01:CDS 60.0%
TGTGGTCGTTGCCATCCCTG+AGG - contig236end:21287-21306 MsG0080048178.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
contig236end gene 20363 22182 20363 ID=MsG0080048178.01;Name=MsG0080048178.01
contig236end mRNA 20363 22182 20363 ID=MsG0080048178.01.T01;Parent=MsG0080048178.01;Name=MsG0080048178.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|527
contig236end exon 21896 22182 21896 ID=MsG0080048178.01.T01:exon:20254;Parent=MsG0080048178.01.T01
contig236end exon 20969 21834 20969 ID=MsG0080048178.01.T01:exon:20253;Parent=MsG0080048178.01.T01
contig236end exon 20639 20877 20639 ID=MsG0080048178.01.T01:exon:20252;Parent=MsG0080048178.01.T01
contig236end exon 20363 20554 20363 ID=MsG0080048178.01.T01:exon:20251;Parent=MsG0080048178.01.T01
contig236end CDS 21896 22182 21896 ID=MsG0080048178.01.T01:cds;Parent=MsG0080048178.01.T01
contig236end CDS 20969 21834 20969 ID=MsG0080048178.01.T01:cds;Parent=MsG0080048178.01.T01
contig236end CDS 20639 20877 20639 ID=MsG0080048178.01.T01:cds;Parent=MsG0080048178.01.T01
contig236end CDS 20363 20554 20363 ID=MsG0080048178.01.T01:cds;Parent=MsG0080048178.01.T01
Gene Sequence

>MsG0080048178.01.T01

ATGGTTAAGGACAAAAACTTGAAGTCCTTAACTGAGTTTGGAGGAGTTGAAGGTGTTGGACATGTTCTTGGAACATTTCCAACAAAGGGAATCATTGGAAGTGCAGATGATATTTCGAGACGGCTCGAGTTGTTCGGTTCAAATACTTACAAAAAGCCACCACCAAAAGGTCTTTTACATTTTGTGCTTGAAGCTTTCAATGATACAACAATTATCATTCTTCTTGTTTGTGCTGGTCTTTCCCTTTTTGGTATAAAAGAACATGGACCAGGGAAGGTTGGTATGAGACAAGAAAGACAGTTTCACAAATTGTCTAAGATAAGCAACAATATCAAAGTTGAAGTTGTGAGAAATGGAAGGCCTCAACAGATATCAATTTTTGATGTTCTTGTGGGAGATGTTGTGTCTCTCAAGATTGGTGATCAAATTCCAGCTGATGGAGTATTTTTATCAGGTTATTCGTTGCAAGTGGACGAATCTAGCATGACAGGTGAGAGCGACCATGTAGAGATTGAGCCTTTAAGAGCTCCTTTTTTGTTGTTCCGGCGCAAAGTTGTCGATGGATATGCTCAGATGCTTGTAACATCTGTGGGAAAAAACACATCATGGGGACAAATGATGAGCTCGATATCGCGAGACACTAATGAAAGAACGCCGTTACAAGCACGCCTCGACAAGTTAACCTCTTCGATTGGAAAGGTTGGACTTGCAGTAGCGTTTCTTGTTCTTCTAGTGTTGTTAATTCGGTATTTCACCGGTAACTCACATGATGAGAAAGGGAATAAGGAATTTCGAGGAAGCAAAACCGATATAAACGATGTTATGAATTCTGTTGTGAGTATCGTTGCGGCTGCAGTCACTATTGTGGTCGTTGCCATCCCTGAGGGTTTGCCATTGGCTGTGACACTCACTCTTGCTTACTCCATGAAAAGAATGATGGCAGATCATGCTATGGTGAGGAAACTTTCAGCTTGTGAAACTATGGGATCAGCAACAGTTATCTGCACTGATAAAACAGGTACCTTGACATTGAATCAAATGAGAGTGACCAAGTTTTGTCTTGGTCTTGAAAATATTATTGAAAACTTTTCCAATGCAATGGCACCAAAAGTTCTTGAGTTGTTCCAACAAGGGATAGGACTCAATACAACTGGTATGGACATGGATGAAATGAAACAGAAGCATAAAGTCCTTCATGTTGAAACATTTAACTCAGAAAAGAAACGAAGCGGTGTTGCTATAAGGAAAGAGAACGACGACAACAGCGTTCACGTGCATTGGAAAGGAGCTGCAGAGATGATACTTGCAATGTGTACAAACTATATTGATAGTAATGGCGTGAGGAAGTCCCTTGACGAAGAAGAACGAGTAAAATTGAGAGAACCATTCAAGGAGAAAAAATCACATCAAATGCTTAGAGAAGATGGATTGACATTGCTTGGTATTGTTGGCCTCAAGGATCCATGCAGACCAAACACTAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATCACCGGCGATAACATATTCACTGCTAAGGCAATAGCAATAGAATGTGAATATTAG

Protein sequence

>MsG0080048178.01.T01

MVKDKNLKSLTEFGGVEGVGHVLGTFPTKGIIGSADDISRRLELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLFGIKEHGPGKVGMRQERQFHKLSKISNNIKVEVVRNGRPQQISIFDVLVGDVVSLKIGDQIPADGVFLSGYSLQVDESSMTGESDHVEIEPLRAPFLLFRRKVVDGYAQMLVTSVGKNTSWGQMMSSISRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSHDEKGNKEFRGSKTDINDVMNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFCLGLENIIENFSNAMAPKVLELFQQGIGLNTTGMDMDEMKQKHKVLHVETFNSEKKRSGVAIRKENDDNSVHVHWKGAAEMILAMCTNYIDSNGVRKSLDEEERVKLREPFKEKKSHQMLREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIAIECEY*