AlfalfaGEDB | MsG0780040280.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040280.01

KEGG: K03254
GO: GO:0005515
PFAM: PF01399

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040280.01.T01	XP_024625631.1	85.429	851	62	6	38	841	15	850	0	1325

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040280.01.T01	Q9LD55	56.944	936	260	11	38	841	16	940	0	924

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040280.01.T01	A0A396H2J3	85.429	851	62	6	38	841	15	850	0.0	1325

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000669.01	MsG0780040280.01	0.805748	1.149048e-49	6.128153e-47
MsG0180001355.01	MsG0780040280.01	0.800189	1.619739e-48	7.494309e-46
MsG0180001663.01	MsG0780040280.01	0.804507	2.090163e-49	1.079551e-46
MsG0180001921.01	MsG0780040280.01	0.828206	1.022619e-54	1.009632e-51
MsG0180002912.01	MsG0780040280.01	0.831355	1.749236e-55	1.893600e-52
MsG0180003088.01	MsG0780040280.01	0.812090	5.048725e-51	3.180067e-48
MsG0180004005.01	MsG0780040280.01	0.805800	1.120519e-49	5.983681e-47
MsG0180005842.01	MsG0780040280.01	0.801594	8.363606e-49	4.009770e-46
MsG0180006016.01	MsG0780040280.01	0.831648	1.481743e-55	1.618015e-52
MsG0180006069.01	MsG0780040280.01	0.815976	7.013683e-52	4.907386e-49

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0080048933.01	MsG0780040280.01	PPI
MsG0180004946.01	MsG0780040280.01	PPI
MsG0280009999.01	MsG0780040280.01	PPI
MsG0380015027.01	MsG0780040280.01	PPI
MsG0380015510.01	MsG0780040280.01	PPI
MsG0380015511.01	MsG0780040280.01	PPI
MsG0480019165.01	MsG0780040280.01	PPI
MsG0580026749.01	MsG0780040280.01	PPI
MsG0580026786.01	MsG0780040280.01	PPI
MsG0580029044.01	MsG0780040280.01	PPI

Showing 1 to 10 of 16 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040280.01.T01	MTR_7g087180	85.529	850	62	6	38	841	15	849	0.0	1323
MsG0780040280.01.T01	MTR_7g099920	70.796	904	151	9	38	841	16	906	0.0	1142
MsG0780040280.01.T01	MTR_7g099920	70.345	870	145	9	72	841	1	857	0.0	1082
MsG0780040280.01.T01	MTR_7g098840	55.000	160	27	2	641	755	53	212	1.07e-33	129
MsG0780040280.01.T01	MTR_7g053110	51.333	150	59	2	556	696	1	145	3.01e-31	122

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040280.01.T01	AT4G11420	56.944	936	260	11	38	841	16	940	0.0	924

Showing 1 to 1 of 1 entries

Previous1Next

Find 181 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTGAGAAGCAAAAG+AGG	0.475380	7:-75376445	MsG0780040280.01.T01:CDS
AAAGGACAGTTTGCGAAGGA+TGG	0.456032	7:-75380995	MsG0780040280.01.T01:CDS
AAAGGAGCGAAATTTGAGGA+TGG	0.656185	7:-75379730	MsG0780040280.01.T01:CDS
AAAGGCTGAGAAGCAAAAGA+GGG	0.605646	7:-75376444	MsG0780040280.01.T01:CDS
AAATAAAATTTCAAAATTAG+GGG	0.584185	7:-75378779	MsG0780040280.01.T01:CDS
AAATGATATCTCCTCCTGAT+AGG	0.436758	7:-75377876	MsG0780040280.01.T01:CDS
AACAGCGCCTAGTGGAAGAG+AGG	0.644173	7:-75377355	MsG0780040280.01.T01:CDS
AACCAGTATACCGTTTCAAG+AGG	0.557814	7:+75377721	None:intergenic
AACCCAACGAACCAGCTTTG+AGG	0.530816	7:-75376406	MsG0780040280.01.T01:CDS
AACCTGCCAGAGTTCAAGTT+CGG	0.531118	7:+75380121	None:intergenic

Showing 1 to 10 of 181 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAGAAAAACCAGGA+CGG	+	Chr7:75376740-75376759	None:intergenic	30.0%
ACAACAAAAATTGAATGAGG+AGG	-	Chr7:75381322-75381341	MsG0780040280.01.T01:intron	30.0%
ACGCAATAGAACCAAAATAA+AGG	+	Chr7:75379781-75379800	None:intergenic	30.0%
ACTGGATTGTATGTAAAAGA+TGG	+	Chr7:75381563-75381582	None:intergenic	30.0%
AGAAAGAGAAGTTGAAGAAA+AGG	-	Chr7:75381711-75381730	MsG0780040280.01.T01:intron	30.0%
AGATATTATTTAACCGACTG+AGG	-	Chr7:75381219-75381238	MsG0780040280.01.T01:intron	30.0%
AGATCTGAATAATTCATACG+CGG	+	Chr7:75376308-75376327	None:intergenic	30.0%
AGATCTGTTGAAGATATACA+TGG	-	Chr7:75378171-75378190	MsG0780040280.01.T01:intron	30.0%
AGCTGTTAAAGTTTGTAAGT+TGG	+	Chr7:75378909-75378928	None:intergenic	30.0%
ATAATAACAATCGAGAGAGT+TGG	-	Chr7:75379897-75379916	MsG0780040280.01.T01:CDS	30.0%

Showing 1 to 10 of 389 entries

Previous1 2 3 4 5…39Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	75376283	75381912	75376283	ID=MsG0780040280.01;Name=MsG0780040280.01
Chr7	mRNA	75376283	75381912	75376283	ID=MsG0780040280.01.T01;Parent=MsG0780040280.01;Name=MsG0780040280.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|0.90\|0.7\|0.63\|11\|0\|841
Chr7	exon	75381812	75381912	75381812	ID=MsG0780040280.01.T01:exon:14749;Parent=MsG0780040280.01.T01
Chr7	exon	75380673	75381165	75380673	ID=MsG0780040280.01.T01:exon:14748;Parent=MsG0780040280.01.T01
Chr7	exon	75380124	75380339	75380124	ID=MsG0780040280.01.T01:exon:14747;Parent=MsG0780040280.01.T01
Chr7	exon	75379650	75380033	75379650	ID=MsG0780040280.01.T01:exon:14746;Parent=MsG0780040280.01.T01
Chr7	exon	75379553	75379582	75379553	ID=MsG0780040280.01.T01:exon:14745;Parent=MsG0780040280.01.T01
Chr7	exon	75378684	75378911	75378684	ID=MsG0780040280.01.T01:exon:14744;Parent=MsG0780040280.01.T01
Chr7	exon	75378427	75378588	75378427	ID=MsG0780040280.01.T01:exon:14743;Parent=MsG0780040280.01.T01
Chr7	exon	75377732	75377965	75377732	ID=MsG0780040280.01.T01:exon:14742;Parent=MsG0780040280.01.T01
Chr7	exon	75377331	75377582	75377331	ID=MsG0780040280.01.T01:exon:14741;Parent=MsG0780040280.01.T01
Chr7	exon	75376830	75376977	75376830	ID=MsG0780040280.01.T01:exon:14740;Parent=MsG0780040280.01.T01
Chr7	exon	75376283	75376560	75376283	ID=MsG0780040280.01.T01:exon:14739;Parent=MsG0780040280.01.T01
Chr7	CDS	75381812	75381912	75381812	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75380673	75381165	75380673	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75380124	75380339	75380124	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75379650	75380033	75379650	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75379553	75379582	75379553	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75378684	75378911	75378684	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75378427	75378588	75378427	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75377732	75377965	75377732	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75377331	75377582	75377331	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75376830	75376977	75376830	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01
Chr7	CDS	75376283	75376560	75376283	ID=MsG0780040280.01.T01:cds;Parent=MsG0780040280.01.T01

Gene Sequence

>MsG0780040280.01.T01

ATGTATGCTACTTACGTGACAACCGCGTATGAATTATTCAGATCTCCTATGAGTATTGTGGAAGATATGGGGGACATGATTGTGTGTAGCAATCTTTCAAATTCATATGCAGAGTTAATCAATGTGGGGCAGAAGCAGAATGCTCTTCAGACGCTGCACGATGTTATTACTTCGAAAAGATACCGATCGTGGCAGAAAATACACGAAACAATTATGTTTGAGTATGTAGAGTTGTGTGTAGACTTGCGGAAAGGACAGTTTGCGAAGGATGGGTTGATTCATTATCGGATCATATGTCAGCAAGTGAATGTTGGTTCGCTGGAGGATGTGGTTAAGCGTTTTATTCACCTGTCAACGGAGAAAGCTGATAAAGCCTGTAGTCAGGCGCTGGAAATGGAACAAGCCCTCGATGTTGATGACTTAGAGGCGGATAAAAGGCCAGAGGACTTGTTGATGTGCTATGTCAGTGAGGGGAAAGGAAAGGATAGATCTGATCGGGAGCTTGTTACCCTATGGTTTAAATTTCTCTGGGAAACTTACAGGATAGTGCTTGAAATATTGCGGCACAACTCAAAATTCGAAGCTTTATATGCTATGACAGCTCATCGAGCACTCCAGTTTTGTAAGCAGTACAAAAGAAAAACAGAATTTAGAAGACTCTGTGAAATCTTAAGAAACCATTTGGCTTATCTTAACAAATATCCGGATCAACGTGACCGACCTGATCTTTCTGCTCCTGAAAGCTTGCAATTGTATCTTGATACTAGATTTGAGCAGCTAAAAATTGCCACCGAACTTGAACTCTGGCAGGAATCCTTTAGATCTGTTGAAGATATACATGGCCTAATGTGCATGGTCAAGAAAACACTGAAACCATCTTTGATGACGGCTTACTATGTTAAGTTGATCGAAATATTTTGGATATCTTCAAGTCATTTATATCATGCATATGCATGGTTCAAGCTCTTTTTGTTACAAAAAAGCTTCAATAAAGATCTGAGTCAGAAGGATTTGGAGTTAATAGCATCATCTGTTGTTCTAGCTGCACTTTCAGTGCCTCCTCATGATCGTAATTTAGAACTAGAGCATGAAAAGGAGCGAAATTTGAGGATGGCTAATCTCATTGGCTTTAATCTTAAAAATAAGATGAATAGCGGCAAAGTGGTATTTTACTTTCCCTCATTTGCGCTCCCGCTCTCAAGGCCATCACTTCTTGCTGAACTGGCATCAAAGGGTGTAATGTCTTGTGTTGCACAAGACGTGAAGGACATTTACTATCTTTTGGAAAACAAATTTCTTCCCTCAGACTTTGCACTTAAAGTACCATCCTTGCTAAATAAAATTTCAAAATTAGGGGGTAAGTTTTCGTTTGCTTCATCGGTTCCAGAGGTACAATTGTCGCAGTATGTCCCAGCACTTAACAAGTTAGCTACCCTGAGGTTGCTACAACAGGTCTCTAATGTGTACCAGACAATGAAGGTTGAGAACTTAGCTGGGATGATGCCTTTTGCTGATTTTTCCGTTGTGGAAAAAATCTCTGTAGATGCTGTTAAGCAGAAATTTCTTTCGATGAAAGTTGACCACATGAAAAAAGTTGTAATTTTCTGCAAGAAGAGTCTTGAGGCTGATGGCTTAAGGGATCACTTGGCCAGTTCTGCTGAACAGTTGAATAAGGCAAGGGAAATGATATCTCCTCCTGATAGGAAACAATCAAAACTTGGACCTTTGCTCCCATCTTTGTTAGAGGTTGTGGCCAAAGATCACAAGATTCTCCTTGCTCGAAAATCAATTATTGAGAAGAGGAAAGAAGAACAAGAACAGAAGCCTCTTGAAAAGCCTCTTGAAACGAGGATTAATCAAAGGATTCGTCGAGAAATAGCCGAAAGAGAACACGAAGAAGCTGAAAGACGTAGACATGAGGAATTGAATTTGACTAACCAACGCAGGATGAGACAAGAAATGGAGAAGAAACTGAAAAAATTAAGTAAAACCATGGATTTTTTGGAAAGAGCAAAGAGAGAAGAGTCTGCTCCGCTTATCGAAGTGGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCATGAGCTTGAGCAACAAAAGATATTATTTAACCGACTGAGGAGAGAAAGGGAGGAATCCAGGAAACAGGAGAGGGAAAAAATGAGGAAGTTGAAGTATTATCTTCGGTTGGAAGAAGAGAGACAACAAAAATTGAATGAGGAGGAAGAAGCTCGGAAGCATGAAGAGGCTGAGAGAAAAAAGAAGGAAGAGACCGAACGCTTAGCGAAATTGGCTGAGATACTTGAAAAGCAGAGGCAAAGAGAAAGAGAAGTTGAAGAAAAGGCTGAGAAGCAAAAGAGGGAAGCATTGTTAGGCAAACCCAACGAACCAGCTTTGAGGCCTTATAAGCCTCCTGCCCGTCGTCCATTGGAGTCTGCTCCTGGTGCTCCTGCTGCACCTGCAACTTCCTCAGCCCCAGCTCCAGGGAAATACATTCCCAAGTTCCGACGAGGAGGAGCTTAA

Protein sequence

>MsG0780040280.01.T01

MYATYVTTAYELFRSPMSIVEDMGDMIVCSNLSNSYAELINVGQKQNALQTLHDVITSKRYRSWQKIHETIMFEYVELCVDLRKGQFAKDGLIHYRIICQQVNVGSLEDVVKRFIHLSTEKADKACSQALEMEQALDVDDLEADKRPEDLLMCYVSEGKGKDRSDRELVTLWFKFLWETYRIVLEILRHNSKFEALYAMTAHRALQFCKQYKRKTEFRRLCEILRNHLAYLNKYPDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQESFRSVEDIHGLMCMVKKTLKPSLMTAYYVKLIEIFWISSSHLYHAYAWFKLFLLQKSFNKDLSQKDLELIASSVVLAALSVPPHDRNLELEHEKERNLRMANLIGFNLKNKMNSGKVVFYFPSFALPLSRPSLLAELASKGVMSCVAQDVKDIYYLLENKFLPSDFALKVPSLLNKISKLGGKFSFASSVPEVQLSQYVPALNKLATLRLLQQVSNVYQTMKVENLAGMMPFADFSVVEKISVDAVKQKFLSMKVDHMKKVVIFCKKSLEADGLRDHLASSAEQLNKAREMISPPDRKQSKLGPLLPSLLEVVAKDHKILLARKSIIEKRKEEQEQKPLEKPLETRINQRIRREIAEREHEEAERRRHEELNLTNQRRMRQEMEKKLKKLSKTMDFLERAKREESAPLIEVAYQQRLVEERILHELEQQKILFNRLRREREESRKQEREKMRKLKYYLRLEEERQQKLNEEEEARKHEEAERKKKEETERLAKLAEILEKQRQREREVEEKAEKQKREALLGKPNEPALRPYKPPARRPLESAPGAPAAPATSSAPAPGKYIPKFRRGGA*