AlfalfaGEDB | MsG0780039969.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039969.01

KEGG: -
GO: GO:0016787
PFAM: PF01535 PF07722 PF14380

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039969.01.T01	XP_039683923.1	57.674	430	58	5	201	506	426	855	6.72E-132	441
MsG0780039969.01.T01	XP_039683923.1	99.296	142	1	0	1	142	1	142	2.44E-80	291
MsG0780039969.01.T01	XP_039683923.1	53.414	249	108	4	441	682	915	1162	7.30E-67	251
MsG0780039969.01.T01	XP_039683923.1	88.462	78	9	0	142	219	231	308	2.39E-34	154
MsG0780039969.01.T01	XP_039683923.1	34.359	195	113	6	504	683	1510	1704	5.12E-17	99

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039969.01.T01	Q9ZUT4	45	300	95	4	277	506	194	493	8.23E-72	244

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039969.01.T01	G7KV64	62.169	415	49	4	200	506	50	464	3.05e-155	467

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000147.01	MsG0780039969.01	0.818276	2.132568e-52	1.589127e-49
MsG0180000148.01	MsG0780039969.01	0.821302	4.339841e-53	3.517359e-50
MsG0180000337.01	MsG0780039969.01	0.801471	8.863283e-49	4.236337e-46
MsG0180001116.01	MsG0780039969.01	-0.812246	4.669968e-51	2.954038e-48
MsG0180002099.01	MsG0780039969.01	-0.825285	5.094614e-54	4.623641e-51
MsG0180003993.01	MsG0780039969.01	0.802675	5.013487e-49	2.470677e-46
MsG0180004154.01	MsG0780039969.01	0.808333	3.260430e-50	1.859217e-47
MsG0180004266.01	MsG0780039969.01	0.845552	3.782003e-59	6.325646e-56
MsG0180004773.01	MsG0780039969.01	-0.833049	6.667189e-56	7.589890e-53
MsG0180005272.01	MsG0780039969.01	0.850230	1.942752e-60	3.779860e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039969.01.T01	MTR_7g082550	62.169	415	49	4	200	506	50	464	7.74e-159	467
MsG0780039969.01.T01	MTR_7g082570	99.296	142	1	0	1	142	1	142	1.32e-92	294
MsG0780039969.01.T01	MTR_7g082570	88.462	78	9	0	142	219	231	308	1.04e-40	154
MsG0780039969.01.T01	MTR_7g082540	58.475	236	83	5	468	689	26	260	6.58e-80	255
MsG0780039969.01.T01	MTR_7g082390	59.910	222	81	4	468	682	29	249	2.06e-78	251
MsG0780039969.01.T01	MTR_6g004280	86.014	143	18	2	2	142	3	145	1.30e-76	251
MsG0780039969.01.T01	MTR_6g004280	56.140	114	42	2	142	253	230	337	1.01e-31	128
MsG0780039969.01.T01	MTR_1g110060	82.979	141	23	1	3	142	4	144	1.09e-73	244
MsG0780039969.01.T01	MTR_1g110060	43.671	158	72	4	142	290	232	381	1.74e-29	122
MsG0780039969.01.T01	MTR_1g073300	28.743	334	161	5	277	533	396	729	2.35e-36	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039969.01.T01	AT5G38200	83.571	140	23	0	3	142	11	150	8.28e-75	245
MsG0780039969.01.T01	AT5G38200	73.750	80	19	1	142	219	238	317	5.26e-32	128
MsG0780039969.01.T01	AT5G38200	83.571	140	23	0	3	142	11	150	1.76e-74	245
MsG0780039969.01.T01	AT5G38200	73.750	80	19	1	142	219	238	317	8.81e-32	128
MsG0780039969.01.T01	AT5G38200	83.571	140	23	0	3	142	11	150	2.64e-74	246
MsG0780039969.01.T01	AT5G38200	73.750	80	19	1	142	219	238	317	1.15e-31	129
MsG0780039969.01.T01	AT1G66860	66.842	190	52	3	2	191	6	184	3.97e-74	246
MsG0780039969.01.T01	AT1G66860	44.156	154	70	4	142	286	234	380	1.51e-28	119
MsG0780039969.01.T01	AT2G37320	45.000	300	95	4	277	506	194	493	8.39e-73	244
MsG0780039969.01.T01	AT1G15040	75.694	144	33	2	1	142	3	146	8.78e-68	226

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Find 160 sgRNAs with CRISPR-Local

Find 544 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCAGGAATTTGTAA+AGG	0.565853	7:-71230192	MsG0780039969.01.T01:intron
AAAAGCCTCTAAAACTTATA+AGG	0.367754	7:-71230130	MsG0780039969.01.T01:CDS
AAAAGTGTCGAGGAGCACCC+TGG	0.656787	7:+71226424	None:intergenic
AAAGGTCTAAAACCAAATCC+TGG	0.567089	7:-71226328	MsG0780039969.01.T01:CDS
AACACTGACCTCTTTGCTTA+TGG	0.252773	7:-71223707	MsG0780039969.01.T01:CDS
AACACTGCAACAAATTCTAT+TGG	0.433534	7:-71227419	MsG0780039969.01.T01:CDS
AACACTTCCGTGAAGCCTAG+AGG	0.640867	7:+71226489	None:intergenic
AACCAAATCCTGGTTGTAGT+TGG	0.411792	7:-71226318	MsG0780039969.01.T01:CDS
AACGAACTTGTTCTTGCGAA+GGG	0.515604	7:+71231652	None:intergenic
AAGCCTAGAGGAAGAAAGGA+GGG	0.605232	7:+71226501	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGCAGGAATTTGTAA+AGG	-	Chr7:71224921-71224940	MsG0780039969.01.T01:intron	30.0%
AAAATCATCGAAGTCATCTT+AGG	-	Chr7:71227650-71227669	MsG0780039969.01.T01:intron	30.0%
AAAGAATCTGAACTTCAAGA+AGG	-	Chr7:71225090-71225109	MsG0780039969.01.T01:intron	30.0%
AACACTGCAACAAATTCTAT+TGG	-	Chr7:71227694-71227713	MsG0780039969.01.T01:intron	30.0%
AAGAAAATTGCTCACTTTAG+AGG	+	Chr7:71229726-71229745	None:intergenic	30.0%
AAGAATCTGAACTTCAAGAA+GGG	-	Chr7:71225091-71225110	MsG0780039969.01.T01:intron	30.0%
AAGAGTGGATAATCAACAAA+AGG	-	Chr7:71229698-71229717	MsG0780039969.01.T01:intron	30.0%
AAGTACCTAATGTAGTTATC+AGG	+	Chr7:71230003-71230022	None:intergenic	30.0%
AATACATCATTGAATACACG+TGG	-	Chr7:71226461-71226480	MsG0780039969.01.T01:CDS	30.0%
ACAAATGACAATGACACATT+CGG	+	Chr7:71225214-71225233	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	71223307	71231828	71223307	ID=MsG0780039969.01;Name=MsG0780039969.01
Chr7	mRNA	71223307	71231828	71223307	ID=MsG0780039969.01.T01;Parent=MsG0780039969.01;Name=MsG0780039969.01.T01;_AED=0.49;_eAED=0.49;_QI=99\|0.28\|0.12\|1\|1\|1\|8\|0\|689
Chr7	exon	71231642	71231828	71231642	ID=MsG0780039969.01.T01:exon:32474;Parent=MsG0780039969.01.T01
Chr7	exon	71231087	71231422	71231087	ID=MsG0780039969.01.T01:exon:32475;Parent=MsG0780039969.01.T01
Chr7	exon	71230699	71230829	71230699	ID=MsG0780039969.01.T01:exon:32476;Parent=MsG0780039969.01.T01
Chr7	exon	71230110	71230204	71230110	ID=MsG0780039969.01.T01:exon:32477;Parent=MsG0780039969.01.T01
Chr7	exon	71227285	71227463	71227285	ID=MsG0780039969.01.T01:exon:32478;Parent=MsG0780039969.01.T01
Chr7	exon	71226815	71227121	71226815	ID=MsG0780039969.01.T01:exon:32479;Parent=MsG0780039969.01.T01
Chr7	exon	71226228	71226609	71226228	ID=MsG0780039969.01.T01:exon:32480;Parent=MsG0780039969.01.T01
Chr7	exon	71223307	71223858	71223307	ID=MsG0780039969.01.T01:exon:32481;Parent=MsG0780039969.01.T01
Chr7	five_prime_UTR	71231730	71231828	71231730	ID=MsG0780039969.01.T01:five_prime_utr;Parent=MsG0780039969.01.T01
Chr7	CDS	71231642	71231729	71231642	ID=MsG0780039969.01.T01:cds;Parent=MsG0780039969.01.T01
Chr7	CDS	71231087	71231422	71231087	ID=MsG0780039969.01.T01:cds;Parent=MsG0780039969.01.T01
Chr7	CDS	71230699	71230829	71230699	ID=MsG0780039969.01.T01:cds;Parent=MsG0780039969.01.T01
Chr7	CDS	71230110	71230204	71230110	ID=MsG0780039969.01.T01:cds;Parent=MsG0780039969.01.T01
Chr7	CDS	71227285	71227463	71227285	ID=MsG0780039969.01.T01:cds;Parent=MsG0780039969.01.T01
Chr7	CDS	71226815	71227121	71226815	ID=MsG0780039969.01.T01:cds;Parent=MsG0780039969.01.T01
Chr7	CDS	71226228	71226609	71226228	ID=MsG0780039969.01.T01:cds;Parent=MsG0780039969.01.T01
Chr7	CDS	71223307	71223858	71223307	ID=MsG0780039969.01.T01:cds;Parent=MsG0780039969.01.T01

Gene Sequence

>MsG0780039969.01.T01

ATGGCTTCCGACCTATCCGGCATTCTCCCTCGTGTTCTAATAGTTTCTAGACGAACCCTTCGCAAGAACAAGTTCGTTGATTTTGTTGGTGAATATCACCTTGATCTTATAGTCGGCTATGGCGCGGTACCGGTCATAGTTCCACGTGTTTCCGGGGTCCACATGTTGTTAGATAGCTTTGAACCAATCCATGGTGTGCTTCTATGTGAAGGAGAAGACATTGATCCATCATGGTACGAAGAAGACACATCATGTCTTTCTCAAGAGGAATTAGAAGAAATAAGAAGACTACATGTGAGTGACACATCGATTGACAAAGAAAAAGATTCAATTGAGTTAGCACTTGCCAAACTTTGTCTTGAAAGAAACATTCCTTACTTGGGAATTTGTAGAGGGTCACAACTTCTAAATGTGGCATGTGGAGGGTTTTATGACCCTGATGCTTATAATCCAGAAGAGGGTAAGTTTATTATGGGATTGCAGTTTCATCCCGAGCGTATGAGAAAAGCTGATTCTGATGAATTTGATTATCCGGGATGCCCCTTTGCTTATCAGGAATTTGTAAAGGCAGTTGTTGCTTATCAGAAGAGGCTGAACACCTCTGTGCAAAAGCCTCTAAAACTTATAAGGAAATGGAAAACAAAGGAAAAGCTAGTTGAAGACATTTTAGAAAACACTGCAACAAATTCTATTGGTAGCAATTTGAAAACTGTTACTGAGACCATTATTGATTCCTCTGTTCTAGAAATGGAACAAGGATTGGGAATTGACGTGTGTTTTTTGTCTCATGCTTTGAGTTTATGTGGATCGAACCGTGATTTTTATGGCGCTGGGTTTGCGCAGGAATGGCGTGTTGATACGTGTTTGGAGCTTTTTCGTCGGATGAGAGGTTTGGATTTGAAGCCGAATTATTTTACTTATACTAGTCTGCTTAGTGCTTGTATGGGAAGTGGAGCACTTGGTCATGGGAGAGGTGTTCATTGTCAGATAATTCAAATGGGTTTTCATTGTTATCTTCATGTTGAAAATGCTCTTATTGCTATGTATTCCAAATGTGGGGTAATTGATGATGCTTTGTACATATTTGAAAACATGGCGAGTAAGGATGTTGTGACGTGGAATTCTATGATTGTTGGATCTTCTTGGTCGGGCCGTTTGCTTCTCGAGGCTCTTGATTTCATCCAAAATATGCCTATTTGTCCTAATGCTGTGATATGGGGTTCCCTCCTTTCTTCCTCTAGGCTTCACGGAAGTGTTTGGATTGGCATCCGAGCAGCCGAAAGCAGGTTATCATTGGAACCAGGGTGCTCCTCGACACTTTTACAGCTGGCAAATCTGTATGCAAGTGTCGGTTGGTGGAATGAAGTAGCAAGAGTGCGGAAATTGATGAAAGACAAAGGTCTAAAACCAAATCCTGGTTGTAGTTGGATTGAAGTCAAAAACGAAGTCTACAGATTTGAAGCCCAAGATAAGTCAAACAGCAGAATGAATGATGTTCTTCTGATAATGGATAGTCTGAGCTACATAACAATCAATGAAGTCAAGTATCATGTTTTAGAAGCCAACCCTGGTGGACATACTTTGAGAATCACCAAAGAGGACAATTTGCAAGGACTATGTCCAACAAAAACCTGTCAACACAACACTAACACTGACCTCTTTGCTTATGGTTCTGACTACAATAATCTTACACTCTTCTATGGTTGTCCTCCTTCATTTACTTTACCTTCGCCAAGTGGATACTTTCCATGTCCTTCAAATGGATATCCTTTTGAATATGTTTATACTTGGTTGGTTCTTAATGGTCTACAACCGTTTTCATGCCAACAAAGTATGGTTGTTCCAGTTTCTGATTCATTTTTTGATGTTCATGATTTGACTAAAATACAAAGTGCAATCAGAGATGGATTTGTGGTGAGATGGATAGCTGGTATTGAAGATTGTGAGAAGTGTAAAGAATCAGGTGGATTTTGTGGTTATAACTGGACTTCAAGGAAAACAACCTGCTACTGCAGAGATCAGTCTTGTTCTAATGCACAGTCTCAAGGTATGTCTAAAGATTTTTGCTAA

Protein sequence

>MsG0780039969.01.T01

MASDLSGILPRVLIVSRRTLRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSWYEEDTSCLSQEELEEIRRLHVSDTSIDKEKDSIELALAKLCLERNIPYLGICRGSQLLNVACGGFYDPDAYNPEEGKFIMGLQFHPERMRKADSDEFDYPGCPFAYQEFVKAVVAYQKRLNTSVQKPLKLIRKWKTKEKLVEDILENTATNSIGSNLKTVTETIIDSSVLEMEQGLGIDVCFLSHALSLCGSNRDFYGAGFAQEWRVDTCLELFRRMRGLDLKPNYFTYTSLLSACMGSGALGHGRGVHCQIIQMGFHCYLHVENALIAMYSKCGVIDDALYIFENMASKDVVTWNSMIVGSSWSGRLLLEALDFIQNMPICPNAVIWGSLLSSSRLHGSVWIGIRAAESRLSLEPGCSSTLLQLANLYASVGWWNEVARVRKLMKDKGLKPNPGCSWIEVKNEVYRFEAQDKSNSRMNDVLLIMDSLSYITINEVKYHVLEANPGGHTLRITKEDNLQGLCPTKTCQHNTNTDLFAYGSDYNNLTLFYGCPPSFTLPSPSGYFPCPSNGYPFEYVYTWLVLNGLQPFSCQQSMVVPVSDSFFDVHDLTKIQSAIRDGFVVRWIAGIEDCEKCKESGGFCGYNWTSRKTTCYCRDQSCSNAQSQGMSKDFC*