Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006700.01.T02 | XP_003593529.1 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0 | 523 |
| MsG0280006700.01.T01 | XP_003593529.1 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006700.01.T01 | P24805 | 41.611 | 149 | 85 | 2 | 1 | 148 | 1 | 148 | 1.49E-34 | 124 |
| MsG0280006700.01.T02 | P24805 | 41.611 | 149 | 85 | 2 | 1 | 148 | 1 | 148 | 1.49E-34 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006700.01.T01 | G7IP18 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| MsG0280006700.01.T02 | G7IP18 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000337.01 | MsG0280006700.01 | 0.812425 | 4.267569e-51 | 2.712596e-48 |
| MsG0180000452.01 | MsG0280006700.01 | 0.888679 | 4.765103e-73 | 3.727659e-69 |
| MsG0180004761.01 | MsG0280006700.01 | -0.806094 | 9.719556e-50 | 5.229464e-47 |
| MsG0180004773.01 | MsG0280006700.01 | -0.813923 | 2.001936e-51 | 1.324599e-48 |
| MsG0180005272.01 | MsG0280006700.01 | 0.833194 | 6.135407e-56 | 7.014371e-53 |
| MsG0280006700.01 | MsG0280010047.01 | 0.845836 | 3.168159e-59 | 5.348628e-56 |
| MsG0280006700.01 | MsG0280010053.01 | 0.810879 | 9.254653e-51 | 5.644965e-48 |
| MsG0280006700.01 | MsG0280010055.01 | 0.816749 | 4.710188e-52 | 3.366096e-49 |
| MsG0280006700.01 | MsG0280011203.01 | 0.803853 | 2.858997e-49 | 1.452161e-46 |
| MsG0280006700.01 | MsG0280011264.01 | 0.821404 | 4.111246e-53 | 3.341497e-50 |
| MsG0280006700.01 | MsG0380015174.01 | 0.856388 | 3.327015e-62 | 7.928337e-59 |
| MsG0280006700.01 | MsG0380015739.01 | 0.859379 | 4.307977e-63 | 1.135566e-59 |
| MsG0280006700.01 | MsG0380017076.01 | 0.803431 | 3.498050e-49 | 1.757518e-46 |
| MsG0280006700.01 | MsG0380017928.01 | -0.812569 | 3.969257e-51 | 2.532439e-48 |
| MsG0280006700.01 | MsG0380018006.01 | 0.800473 | 1.417722e-48 | 6.606948e-46 |
| MsG0280006700.01 | MsG0480020838.01 | -0.814007 | 1.917975e-51 | 1.271987e-48 |
| MsG0280006700.01 | MsG0480023360.01 | 0.825708 | 4.044864e-54 | 3.715387e-51 |
| MsG0280006700.01 | MsG0580025151.01 | 0.831505 | 1.607213e-55 | 1.747595e-52 |
| MsG0280006700.01 | MsG0680030315.01 | 0.878083 | 3.740161e-69 | 1.926480e-65 |
| MsG0280006700.01 | MsG0780039969.01 | 0.806828 | 6.804462e-50 | 3.730451e-47 |
| MsG0280006700.01 | MsG0780041648.01 | 0.910554 | 1.644603e-82 | 3.376458e-78 |
| MsG0280006700.01 | MsG0880042495.01 | 0.808235 | 3.420900e-50 | 1.945665e-47 |
| MsG0280006700.01 | MsG0880042688.01 | 0.811869 | 5.642264e-51 | 3.532569e-48 |
| MsG0280006700.01 | MsG0880045054.01 | 0.800429 | 1.447323e-48 | 6.737770e-46 |
| MsG0280006700.01 | MsG0880046170.01 | 0.815787 | 7.730430e-52 | 5.381259e-49 |
| MsG0280006700.01 | MsG0880046176.01 | 0.811283 | 7.564004e-51 | 4.662942e-48 |
| MsG0280006700.01 | MsG0880046630.01 | -0.815424 | 9.310773e-52 | 6.416841e-49 |
| MsG0280006700.01 | MsG0880047531.01 | 0.846720 | 1.818961e-59 | 3.159723e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006700.01.T02 | MTR_2g013140 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| MsG0280006700.01.T02 | MTR_2g013140 | 99.474 | 190 | 1 | 0 | 1 | 190 | 1 | 190 | 3.54e-140 | 391 |
| MsG0280006700.01.T02 | MTR_4g088955 | 74.704 | 253 | 62 | 2 | 1 | 251 | 64 | 316 | 4.02e-136 | 386 |
| MsG0280006700.01.T02 | MTR_2g079670 | 66.800 | 250 | 82 | 1 | 1 | 249 | 1 | 250 | 4.68e-113 | 325 |
| MsG0280006700.01.T02 | MTR_2g079670 | 73.889 | 180 | 47 | 0 | 70 | 249 | 22 | 201 | 8.57e-93 | 272 |
| MsG0280006700.01.T02 | MTR_1g041380 | 46.000 | 250 | 131 | 3 | 1 | 248 | 1 | 248 | 2.63e-81 | 244 |
| MsG0280006700.01.T02 | MTR_1g102680 | 42.972 | 249 | 138 | 2 | 1 | 247 | 1 | 247 | 8.00e-78 | 235 |
| MsG0280006700.01.T02 | MTR_2g079670 | 65.445 | 191 | 65 | 1 | 1 | 190 | 1 | 191 | 3.66e-77 | 232 |
| MsG0280006700.01.T02 | MTR_2g022520 | 40.870 | 230 | 132 | 3 | 1 | 229 | 1 | 227 | 3.32e-58 | 185 |
| MsG0280006700.01.T02 | MTR_4g117050 | 38.261 | 230 | 139 | 2 | 1 | 229 | 1 | 228 | 1.39e-57 | 183 |
| MsG0280006700.01.T02 | MTR_1g041380 | 45.263 | 190 | 102 | 2 | 1 | 190 | 1 | 188 | 7.68e-57 | 180 |
| MsG0280006700.01.T02 | MTR_4g117050 | 42.262 | 168 | 94 | 2 | 66 | 232 | 21 | 186 | 4.24e-46 | 152 |
| MsG0280006700.01.T02 | MTR_1g019625 | 62.963 | 54 | 13 | 1 | 112 | 158 | 14 | 67 | 1.02e-14 | 67.4 |
| MsG0280006700.01.T02 | MTR_7g059340 | 68.421 | 38 | 12 | 0 | 113 | 150 | 18 | 55 | 3.94e-11 | 58.5 |
| MsG0280006700.01.T01 | MTR_2g013140 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| MsG0280006700.01.T01 | MTR_2g013140 | 99.474 | 190 | 1 | 0 | 1 | 190 | 1 | 190 | 3.54e-140 | 391 |
| MsG0280006700.01.T01 | MTR_4g088955 | 74.704 | 253 | 62 | 2 | 1 | 251 | 64 | 316 | 4.02e-136 | 386 |
| MsG0280006700.01.T01 | MTR_2g079670 | 66.800 | 250 | 82 | 1 | 1 | 249 | 1 | 250 | 4.68e-113 | 325 |
| MsG0280006700.01.T01 | MTR_2g079670 | 73.889 | 180 | 47 | 0 | 70 | 249 | 22 | 201 | 8.57e-93 | 272 |
| MsG0280006700.01.T01 | MTR_1g041380 | 46.000 | 250 | 131 | 3 | 1 | 248 | 1 | 248 | 2.63e-81 | 244 |
| MsG0280006700.01.T01 | MTR_1g102680 | 42.972 | 249 | 138 | 2 | 1 | 247 | 1 | 247 | 8.00e-78 | 235 |
| MsG0280006700.01.T01 | MTR_2g079670 | 65.445 | 191 | 65 | 1 | 1 | 190 | 1 | 191 | 3.66e-77 | 232 |
| MsG0280006700.01.T01 | MTR_2g022520 | 40.870 | 230 | 132 | 3 | 1 | 229 | 1 | 227 | 3.32e-58 | 185 |
| MsG0280006700.01.T01 | MTR_4g117050 | 38.261 | 230 | 139 | 2 | 1 | 229 | 1 | 228 | 1.39e-57 | 183 |
| MsG0280006700.01.T01 | MTR_1g041380 | 45.263 | 190 | 102 | 2 | 1 | 190 | 1 | 188 | 7.68e-57 | 180 |
| MsG0280006700.01.T01 | MTR_4g117050 | 42.262 | 168 | 94 | 2 | 66 | 232 | 21 | 186 | 4.24e-46 | 152 |
| MsG0280006700.01.T01 | MTR_1g019625 | 62.963 | 54 | 13 | 1 | 112 | 158 | 14 | 67 | 1.02e-14 | 67.4 |
| MsG0280006700.01.T01 | MTR_7g059340 | 68.421 | 38 | 12 | 0 | 113 | 150 | 18 | 55 | 3.94e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006700.01.T02 | AT4G27450 | 65.060 | 249 | 85 | 2 | 1 | 247 | 1 | 249 | 3.31e-117 | 335 |
| MsG0280006700.01.T02 | AT3G15450 | 61.847 | 249 | 92 | 3 | 1 | 247 | 1 | 248 | 3.98e-109 | 315 |
| MsG0280006700.01.T02 | AT5G43830 | 45.783 | 249 | 132 | 2 | 1 | 247 | 1 | 248 | 8.93e-81 | 243 |
| MsG0280006700.01.T02 | AT3G15450 | 59.896 | 192 | 74 | 3 | 1 | 190 | 1 | 191 | 3.09e-76 | 230 |
| MsG0280006700.01.T02 | AT3G22850 | 41.700 | 247 | 142 | 1 | 1 | 247 | 1 | 245 | 9.14e-73 | 223 |
| MsG0280006700.01.T02 | AT3G15450 | 59.649 | 171 | 66 | 3 | 1 | 169 | 1 | 170 | 5.06e-64 | 198 |
| MsG0280006700.01.T02 | AT5G19140 | 42.174 | 230 | 129 | 3 | 1 | 229 | 1 | 227 | 2.46e-60 | 190 |
| MsG0280006700.01.T02 | AT5G19140 | 39.056 | 233 | 126 | 4 | 1 | 232 | 1 | 218 | 6.19e-52 | 169 |
| MsG0280006700.01.T02 | AT5G19140 | 45.833 | 168 | 88 | 2 | 66 | 232 | 29 | 194 | 1.57e-50 | 164 |
| MsG0280006700.01.T01 | AT4G27450 | 65.060 | 249 | 85 | 2 | 1 | 247 | 1 | 249 | 3.31e-117 | 335 |
| MsG0280006700.01.T01 | AT3G15450 | 61.847 | 249 | 92 | 3 | 1 | 247 | 1 | 248 | 3.98e-109 | 315 |
| MsG0280006700.01.T01 | AT5G43830 | 45.783 | 249 | 132 | 2 | 1 | 247 | 1 | 248 | 8.93e-81 | 243 |
| MsG0280006700.01.T01 | AT3G15450 | 59.896 | 192 | 74 | 3 | 1 | 190 | 1 | 191 | 3.09e-76 | 230 |
| MsG0280006700.01.T01 | AT3G22850 | 41.700 | 247 | 142 | 1 | 1 | 247 | 1 | 245 | 9.14e-73 | 223 |
| MsG0280006700.01.T01 | AT3G15450 | 59.649 | 171 | 66 | 3 | 1 | 169 | 1 | 170 | 5.06e-64 | 198 |
| MsG0280006700.01.T01 | AT5G19140 | 42.174 | 230 | 129 | 3 | 1 | 229 | 1 | 227 | 2.46e-60 | 190 |
| MsG0280006700.01.T01 | AT5G19140 | 39.056 | 233 | 126 | 4 | 1 | 232 | 1 | 218 | 6.19e-52 | 169 |
| MsG0280006700.01.T01 | AT5G19140 | 45.833 | 168 | 88 | 2 | 66 | 232 | 29 | 194 | 1.57e-50 | 164 |
Find 43 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCAACTTATTAGTCCTTT+TGG | 0.192738 | 2:+5145967 | MsG0280006700.01.T01:three_prime_UTR |
| AGGCATTGCTTTCATCTTCT+TGG | 0.213186 | 2:-5145770 | None:intergenic |
| CTGAGAATCAACATTGAAAT+TGG | 0.290530 | 2:-5145824 | None:intergenic |
| GCGTCGGAAGTGAAGCTAAC+TGG | 0.331100 | 2:+5145869 | MsG0280006700.01.T01:CDS |
| GGGTTTGTTTGAAGGGGAAT+AGG | 0.347155 | 2:-5144431 | None:intergenic |
| CAAGAAATGGAGATTGAAAA+TGG | 0.365031 | 2:-5144091 | None:intergenic |
| GTGAAGCTAACTGGGCTACT+TGG | 0.380329 | 2:+5145878 | MsG0280006700.01.T01:CDS |
| AAACTTCGTGTTATTCATAT+CGG | 0.383357 | 2:-5146066 | None:intergenic |
| GCTGGACTGTTAAGCTCCTT+TGG | 0.386416 | 2:-5144298 | None:intergenic |
| GGTCATGTAAAATGCATTAG+AGG | 0.401764 | 2:-5144386 | None:intergenic |
| AAAATGAACATGCCAAGAAA+TGG | 0.410585 | 2:-5144104 | None:intergenic |
| TATAGCATACCTTTGATGAA+TGG | 0.418351 | 2:-5144455 | None:intergenic |
| AGAAGACACTGAAATTGATT+AGG | 0.428037 | 2:-5146097 | None:intergenic |
| TTGGATGCTCAAAGTTCAAC+AGG | 0.429617 | 2:-5145747 | None:intergenic |
| GATCTAGAAGAAAACATGTT+GGG | 0.430615 | 2:+5144247 | MsG0280006700.01.T01:exon |
| TGAAGCTAACTGGGCTACTT+GGG | 0.434720 | 2:+5145879 | MsG0280006700.01.T01:CDS |
| ATTGCTTTCATCTTCTTGGT+TGG | 0.456752 | 2:-5145766 | None:intergenic |
| TCTCTAAGAATTTCATGACT+TGG | 0.475577 | 2:-5144346 | None:intergenic |
| TGAATGGAGGGTTTGTTTGA+AGG | 0.484201 | 2:-5144439 | None:intergenic |
| AAGGACTAATAAGTTGCTCT+TGG | 0.494089 | 2:-5145963 | None:intergenic |
| GAATGGAGGGTTTGTTTGAA+GGG | 0.511713 | 2:-5144438 | None:intergenic |
| CGTCGGAAGTGAAGCTAACT+GGG | 0.514379 | 2:+5145870 | MsG0280006700.01.T01:CDS |
| TGTTTGTTTCATAGTGAGCA+TGG | 0.516434 | 2:+5145724 | MsG0280006700.01.T01:CDS |
| AGCTTCTAATTCACACACTA+AGG | 0.518797 | 2:+5144318 | MsG0280006700.01.T01:CDS |
| AGCATACCTTTGATGAATGG+AGG | 0.526703 | 2:-5144452 | None:intergenic |
| GCATACCTTTGATGAATGGA+GGG | 0.530944 | 2:-5144451 | None:intergenic |
| ACACCCTCACTGTCTATCCT+AGG | 0.539998 | 2:-5145790 | None:intergenic |
| AATGGAGGGTTTGTTTGAAG+GGG | 0.545512 | 2:-5144437 | None:intergenic |
| TTAGTGTGTGAATTAGAAGC+TGG | 0.552483 | 2:-5144316 | None:intergenic |
| TGATCTAGAAGAAAACATGT+TGG | 0.552714 | 2:+5144246 | MsG0280006700.01.T01:exon |
| AGAAGATGAAAGCAATGCCT+AGG | 0.563928 | 2:+5145773 | MsG0280006700.01.T01:CDS |
| GACAGTGAGGGTGTTATGTG+TGG | 0.584626 | 2:+5145799 | MsG0280006700.01.T01:CDS |
| ACAAACCCTCCATTCATCAA+AGG | 0.600022 | 2:+5144446 | MsG0280006700.01.T01:CDS |
| TTAGCTTCACTTCCGACGCG+TGG | 0.602591 | 2:-5145865 | None:intergenic |
| AAAGTTGGTTAATGCACCAA+AGG | 0.604581 | 2:+5144282 | MsG0280006700.01.T01:CDS |
| TCAATGTTGATTCTCAGTCG+AGG | 0.609359 | 2:+5145830 | MsG0280006700.01.T01:CDS |
| AATCAAATGATGCCACGCGT+CGG | 0.614420 | 2:+5145853 | MsG0280006700.01.T01:CDS |
| TAATAAAGCATCATTTCCAA+AGG | 0.630341 | 2:-5144407 | None:intergenic |
| GAAGCTAACTGGGCTACTTG+GGG | 0.631415 | 2:+5145880 | MsG0280006700.01.T01:CDS |
| ACAGTGAGGGTGTTATGTGT+GGG | 0.635934 | 2:+5145800 | MsG0280006700.01.T01:CDS |
| ATGCCTAGGATAGACAGTGA+GGG | 0.675197 | 2:+5145787 | MsG0280006700.01.T01:CDS |
| CAGTGAGGGTGTTATGTGTG+GGG | 0.693979 | 2:+5145801 | MsG0280006700.01.T01:CDS |
| AATGCCTAGGATAGACAGTG+AGG | 0.696652 | 2:+5145786 | MsG0280006700.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAAAAAAACTAAA+TGG | - | Chr2:5144511-5144530 | None:intergenic | 10.0% |
| !! | TGTATATTTCAAATAATATT+AGG | + | Chr2:5144892-5144911 | MsG0280006700.01.T01:intron | 10.0% |
| !!! | TATTAAATGAATCTAAAATA+TGG | + | Chr2:5144841-5144860 | MsG0280006700.01.T01:intron | 10.0% |
| !! | TCAATTAATTAGTCAAAAAA+AGG | - | Chr2:5145359-5145378 | None:intergenic | 15.0% |
| !!! | ATCATTAGTTTATAATTAGA+AGG | - | Chr2:5144485-5144504 | None:intergenic | 15.0% |
| !!! | TATATAATTTTAGCTTCTAT+AGG | + | Chr2:5144636-5144655 | MsG0280006700.01.T01:intron | 15.0% |
| !! | AATAACCATTTAGATCAAAT+TGG | + | Chr2:5145627-5145646 | MsG0280006700.01.T01:intron | 20.0% |
| !! | AATTATGTTTGTGTTTGATT+AGG | + | Chr2:5145380-5145399 | MsG0280006700.01.T01:intron | 20.0% |
| !! | ATTATGTTTGTGTTTGATTA+GGG | + | Chr2:5145381-5145400 | MsG0280006700.01.T01:intron | 20.0% |
| !! | TAAATGTTGTTGAAATTTCA+GGG | + | Chr2:5145701-5145720 | MsG0280006700.01.T01:intron | 20.0% |
| !! | TTAAATGTTGTTGAAATTTC+AGG | + | Chr2:5145700-5145719 | MsG0280006700.01.T01:intron | 20.0% |
| !!! | TTTTTGCTTATATTTATGAC+CGG | + | Chr2:5144865-5144884 | MsG0280006700.01.T01:intron | 20.0% |
| ! | ATAATATTAGGTCAAACTAC+TGG | + | Chr2:5144904-5144923 | MsG0280006700.01.T01:intron | 25.0% |
| ! | ATCATTTATGATCTTTCCAT+AGG | - | Chr2:5145567-5145586 | None:intergenic | 25.0% |
| ! | ATTTGTGATCTATGATCATA+AGG | + | Chr2:5145265-5145284 | MsG0280006700.01.T01:CDS | 25.0% |
| ! | CAAAAACTAAATATCCCAAA+AGG | - | Chr2:5145985-5146004 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | Chr2:5144791-5144810 | MsG0280006700.01.T01:intron | 25.0% |
| ! | CTAATCTTAGACATAAACTT+AGG | - | Chr2:5144691-5144710 | None:intergenic | 25.0% |
| ! | CTAGATCTAGGTAAATAAAA+AGG | + | Chr2:5144978-5144997 | MsG0280006700.01.T01:intron | 25.0% |
| ! | TCATTTATGATCTTTCCATA+GGG | - | Chr2:5145566-5145585 | None:intergenic | 25.0% |
| ! | TTAATTGACTAAGATTATGC+AGG | - | Chr2:5145118-5145137 | None:intergenic | 25.0% |
| !! | AAACTTCGTGTTATTCATAT+CGG | - | Chr2:5146069-5146088 | None:intergenic | 25.0% |
| !! | TAATAAAGCATCATTTCCAA+AGG | - | Chr2:5144410-5144429 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | - | Chr2:5144756-5144775 | None:intergenic | 25.0% |
| !!! | GATATTTAGTTTTTGTCGTT+TGG | + | Chr2:5145990-5146009 | MsG0280006700.01.T01:three_prime_UTR | 25.0% |
| !!! | TAATTTTTTCCAACGTTTAG+AGG | - | Chr2:5145335-5145354 | None:intergenic | 25.0% |
| !!! | TGTGGTTATTTCTGAAAATT+TGG | + | Chr2:5145452-5145471 | MsG0280006700.01.T01:CDS | 25.0% |
| AAAATGAACATGCCAAGAAA+TGG | - | Chr2:5144107-5144126 | None:intergenic | 30.0% | |
| AACATATACTGTGCTTTCAT+GGG | + | Chr2:5145089-5145108 | MsG0280006700.01.T01:CDS | 30.0% | |
| AACCAAATATACATACCAGT+TGG | - | Chr2:5145519-5145538 | None:intergenic | 30.0% | |
| AGTCAATTAAACAAGCAGTA+TGG | + | Chr2:5145128-5145147 | MsG0280006700.01.T01:CDS | 30.0% | |
| ATAATGTGCGAAATTGTCTA+TGG | + | Chr2:5145659-5145678 | MsG0280006700.01.T01:intron | 30.0% | |
| ATATACATACCAGTTGGAAA+TGG | - | Chr2:5145513-5145532 | None:intergenic | 30.0% | |
| ATTATATGCAATTACACCTC+CGG | + | Chr2:5144734-5144753 | MsG0280006700.01.T01:intron | 30.0% | |
| CAAGAAATGGAGATTGAAAA+TGG | - | Chr2:5144094-5144113 | None:intergenic | 30.0% | |
| CTGAGAATCAACATTGAAAT+TGG | - | Chr2:5145827-5145846 | None:intergenic | 30.0% | |
| GATCTAGAAGAAAACATGTT+GGG | + | Chr2:5144247-5144266 | MsG0280006700.01.T01:exon | 30.0% | |
| GTATGCCAATTTGATCTAAA+TGG | - | Chr2:5145635-5145654 | None:intergenic | 30.0% | |
| TAATGTGCGAAATTGTCTAT+GGG | + | Chr2:5145660-5145679 | MsG0280006700.01.T01:intron | 30.0% | |
| TATAGCATACCTTTGATGAA+TGG | - | Chr2:5144458-5144477 | None:intergenic | 30.0% | |
| TGATCTAGAAGAAAACATGT+TGG | + | Chr2:5144246-5144265 | MsG0280006700.01.T01:exon | 30.0% | |
| TGTTTATCATCGAAGCATAT+CGG | + | Chr2:5145177-5145196 | MsG0280006700.01.T01:CDS | 30.0% | |
| TTCCAACTGGTATGTATATT+TGG | + | Chr2:5145514-5145533 | MsG0280006700.01.T01:intron | 30.0% | |
| ! | AAACATGTTGGGAATTTTCA+AGG | + | Chr2:5144258-5144277 | MsG0280006700.01.T01:exon | 30.0% |
| ! | AATGCATTTTACATGACCTT+TGG | + | Chr2:5144391-5144410 | MsG0280006700.01.T01:CDS | 30.0% |
| ! | AGCAACTTATTAGTCCTTTT+GGG | + | Chr2:5145968-5145987 | MsG0280006700.01.T01:three_prime_UTR | 30.0% |
| ! | CATTTTCAATCTCCATTTCT+TGG | + | Chr2:5144092-5144111 | MsG0280006700.01.T01:five_prime_UTR | 30.0% |
| ! | GCATATAATCTTTTCTCCTA+CGG | - | Chr2:5144723-5144742 | None:intergenic | 30.0% |
| ! | TATTTACCTAGATCTAGTTC+AGG | - | Chr2:5144975-5144994 | None:intergenic | 30.0% |
| ! | TATTTGAAATATACACCCTC+CGG | - | Chr2:5144887-5144906 | None:intergenic | 30.0% |
| ! | TCTCTAAGAATTTCATGACT+TGG | - | Chr2:5144349-5144368 | None:intergenic | 30.0% |
| !! | ATGAGTTTTTAACTACCCTA+TGG | + | Chr2:5145548-5145567 | MsG0280006700.01.T01:intron | 30.0% |
| AAATGACCTGAACTAGATCT+AGG | + | Chr2:5144966-5144985 | MsG0280006700.01.T01:intron | 35.0% | |
| AAGGACTAATAAGTTGCTCT+TGG | - | Chr2:5145966-5145985 | None:intergenic | 35.0% | |
| AGCTTCTAATTCACACACTA+AGG | + | Chr2:5144318-5144337 | MsG0280006700.01.T01:CDS | 35.0% | |
| ATTGCTTTCATCTTCTTGGT+TGG | - | Chr2:5145769-5145788 | None:intergenic | 35.0% | |
| CAACATATACTGTGCTTTCA+TGG | + | Chr2:5145088-5145107 | MsG0280006700.01.T01:CDS | 35.0% | |
| GGTCATGTAAAATGCATTAG+AGG | - | Chr2:5144389-5144408 | None:intergenic | 35.0% | |
| GTGATCTATGATCATAAGGA+TGG | + | Chr2:5145269-5145288 | MsG0280006700.01.T01:CDS | 35.0% | |
| TAGGTTTCAGATCTGATTGT+AGG | + | Chr2:5144655-5144674 | MsG0280006700.01.T01:intron | 35.0% | |
| TGCTTATATTTATGACCGGA+GGG | + | Chr2:5144869-5144888 | MsG0280006700.01.T01:intron | 35.0% | |
| TGTTTGTTTCATAGTGAGCA+TGG | + | Chr2:5145724-5145743 | MsG0280006700.01.T01:CDS | 35.0% | |
| TTAGTGTGTGAATTAGAAGC+TGG | - | Chr2:5144319-5144338 | None:intergenic | 35.0% | |
| TTGCTTATATTTATGACCGG+AGG | + | Chr2:5144868-5144887 | MsG0280006700.01.T01:intron | 35.0% | |
| ! | AAAGTTGGTTAATGCACCAA+AGG | + | Chr2:5144282-5144301 | MsG0280006700.01.T01:CDS | 35.0% |
| ! | AAGCAGTATGGACTATCAAA+GGG | + | Chr2:5145140-5145159 | MsG0280006700.01.T01:CDS | 35.0% |
| ! | CTTAATTAGCCTCTAAACGT+TGG | + | Chr2:5145323-5145342 | MsG0280006700.01.T01:intron | 35.0% |
| ! | GAGCAACTTATTAGTCCTTT+TGG | + | Chr2:5145967-5145986 | MsG0280006700.01.T01:three_prime_UTR | 35.0% |
| !! | AAATGTGTCATTTGTCACAC+AGG | + | Chr2:5145048-5145067 | MsG0280006700.01.T01:intron | 35.0% |
| !! | GGGAATTTTCAAGGAAAAGT+TGG | + | Chr2:5144267-5144286 | MsG0280006700.01.T01:CDS | 35.0% |
| ACAAACCCTCCATTCATCAA+AGG | + | Chr2:5144446-5144465 | MsG0280006700.01.T01:CDS | 40.0% | |
| ACACAGGTTGTTTAGTGGTT+TGG | + | Chr2:5145064-5145083 | MsG0280006700.01.T01:intron | 40.0% | |
| AGAAGATGAAAGCAATGCCT+AGG | + | Chr2:5145773-5145792 | MsG0280006700.01.T01:CDS | 40.0% | |
| AGCATACCTTTGATGAATGG+AGG | - | Chr2:5144455-5144474 | None:intergenic | 40.0% | |
| ATGGCCATATTGGACTCTAT+TGG | + | Chr2:5145409-5145428 | MsG0280006700.01.T01:CDS | 40.0% | |
| CAAGTCCTCAAAGAACTTGA+AGG | + | Chr2:5145233-5145252 | MsG0280006700.01.T01:CDS | 40.0% | |
| GCATACCTTTGATGAATGGA+GGG | - | Chr2:5144454-5144473 | None:intergenic | 40.0% | |
| TACCCCAATAGAGTCCAATA+TGG | - | Chr2:5145416-5145435 | None:intergenic | 40.0% | |
| TCATTTGCACCATTTCCAAC+TGG | + | Chr2:5145501-5145520 | MsG0280006700.01.T01:CDS | 40.0% | |
| TGGCCATATTGGACTCTATT+GGG | + | Chr2:5145410-5145429 | MsG0280006700.01.T01:CDS | 40.0% | |
| TTGCTTATATTTGTGACCGG+AGG | - | Chr2:5144753-5144772 | None:intergenic | 40.0% | |
| TTGGATGCTCAAAGTTCAAC+AGG | - | Chr2:5145750-5145769 | None:intergenic | 40.0% | |
| TTGTCACACAGGTTGTTTAG+TGG | + | Chr2:5145059-5145078 | MsG0280006700.01.T01:intron | 40.0% | |
| ! | AACTGCCTTCAAGTTCTTTG+AGG | - | Chr2:5145241-5145260 | None:intergenic | 40.0% |
| ! | AATGGAGGGTTTGTTTGAAG+GGG | - | Chr2:5144440-5144459 | None:intergenic | 40.0% |
| ! | AGGCATTGCTTTCATCTTCT+TGG | - | Chr2:5145773-5145792 | None:intergenic | 40.0% |
| ! | CAAGCAGTATGGACTATCAA+AGG | + | Chr2:5145139-5145158 | MsG0280006700.01.T01:CDS | 40.0% |
| ! | GAATGGAGGGTTTGTTTGAA+GGG | - | Chr2:5144441-5144460 | None:intergenic | 40.0% |
| ! | GTGTTTGATTAGGGTTCTGA+TGG | + | Chr2:5145390-5145409 | MsG0280006700.01.T01:intron | 40.0% |
| ! | TGAATGGAGGGTTTGTTTGA+AGG | - | Chr2:5144442-5144461 | None:intergenic | 40.0% |
| !! | TCAATGTTGATTCTCAGTCG+AGG | + | Chr2:5145830-5145849 | MsG0280006700.01.T01:CDS | 40.0% |
| AATCAAATGATGCCACGCGT+CGG | + | Chr2:5145853-5145872 | MsG0280006700.01.T01:CDS | 45.0% | |
| AATGCCTAGGATAGACAGTG+AGG | + | Chr2:5145786-5145805 | MsG0280006700.01.T01:CDS | 45.0% | |
| AGATTAGACCTGCAAACCGT+AGG | + | Chr2:5144704-5144723 | MsG0280006700.01.T01:intron | 45.0% | |
| ATATCGGACACTTCGTGACA+GGG | + | Chr2:5145193-5145212 | MsG0280006700.01.T01:CDS | 45.0% | |
| ATGCCTAGGATAGACAGTGA+GGG | + | Chr2:5145787-5145806 | MsG0280006700.01.T01:CDS | 45.0% | |
| GGCCATATTGGACTCTATTG+GGG | + | Chr2:5145411-5145430 | MsG0280006700.01.T01:CDS | 45.0% | |
| TGAAGCTAACTGGGCTACTT+GGG | + | Chr2:5145879-5145898 | MsG0280006700.01.T01:CDS | 45.0% | |
| ! | CAGTATGGACTATCAAAGGG+AGG | + | Chr2:5145143-5145162 | MsG0280006700.01.T01:CDS | 45.0% |
| ! | CTTTGAGGACTTGATCAGCA+GGG | - | Chr2:5145226-5145245 | None:intergenic | 45.0% |
| ! | GGGTTTGTTTGAAGGGGAAT+AGG | - | Chr2:5144434-5144453 | None:intergenic | 45.0% |
| ! | TAGGGTTCTGATGGCCATAT+TGG | + | Chr2:5145399-5145418 | MsG0280006700.01.T01:intron | 45.0% |
| ! | TATTGCTGCTGATGGTTCTG+TGG | + | Chr2:5145434-5145453 | MsG0280006700.01.T01:CDS | 45.0% |
| ! | TCTTTGAGGACTTGATCAGC+AGG | - | Chr2:5145227-5145246 | None:intergenic | 45.0% |
| ! | TCTTTTCTCCTACGGTTTGC+AGG | - | Chr2:5144715-5144734 | None:intergenic | 45.0% |
| !! | ACAGTGAGGGTGTTATGTGT+GGG | + | Chr2:5145800-5145819 | MsG0280006700.01.T01:CDS | 45.0% |
| !! | TATTGGGGTATTGCTGCTGA+TGG | + | Chr2:5145426-5145445 | MsG0280006700.01.T01:CDS | 45.0% |
| ACACCCTCACTGTCTATCCT+AGG | - | Chr2:5145793-5145812 | None:intergenic | 50.0% | |
| ACTATCAAAGGGAGGCAACG+AGG | + | Chr2:5145151-5145170 | MsG0280006700.01.T01:CDS | 50.0% | |
| AGGACTTGATCAGCAGGGTA+TGG | - | Chr2:5145221-5145240 | None:intergenic | 50.0% | |
| CATATCGGACACTTCGTGAC+AGG | + | Chr2:5145192-5145211 | MsG0280006700.01.T01:CDS | 50.0% | |
| CGTCGGAAGTGAAGCTAACT+GGG | + | Chr2:5145870-5145889 | MsG0280006700.01.T01:CDS | 50.0% | |
| GAAGCTAACTGGGCTACTTG+GGG | + | Chr2:5145880-5145899 | MsG0280006700.01.T01:CDS | 50.0% | |
| GCTGGACTGTTAAGCTCCTT+TGG | - | Chr2:5144301-5144320 | None:intergenic | 50.0% | |
| GTGAAGCTAACTGGGCTACT+TGG | + | Chr2:5145878-5145897 | MsG0280006700.01.T01:CDS | 50.0% | |
| TATCGGACACTTCGTGACAG+GGG | + | Chr2:5145194-5145213 | MsG0280006700.01.T01:CDS | 50.0% | |
| !! | CAGTGAGGGTGTTATGTGTG+GGG | + | Chr2:5145801-5145820 | MsG0280006700.01.T01:CDS | 50.0% |
| !! | GACAGTGAGGGTGTTATGTG+TGG | + | Chr2:5145799-5145818 | MsG0280006700.01.T01:CDS | 50.0% |
| GCGTCGGAAGTGAAGCTAAC+TGG | + | Chr2:5145869-5145888 | MsG0280006700.01.T01:CDS | 55.0% | |
| TTAGCTTCACTTCCGACGCG+TGG | - | Chr2:5145868-5145887 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 5144083 | 5146105 | 5144083 | ID=MsG0280006700.01;Name=MsG0280006700.01 |
| Chr2 | mRNA | 5144083 | 5146105 | 5144083 | ID=MsG0280006700.01.T01;Parent=MsG0280006700.01;Name=MsG0280006700.01.T01;_AED=0.49;_eAED=0.49;_QI=86|1|1|1|0.75|0.6|5|196|251 |
| Chr2 | exon | 5144083 | 5144113 | 5144083 | ID=MsG0280006700.01.T01:exon:1968;Parent=MsG0280006700.01.T01 |
| Chr2 | exon | 5144207 | 5144467 | 5144207 | ID=MsG0280006700.01.T01:exon:1969;Parent=MsG0280006700.01.T01 |
| Chr2 | exon | 5145722 | 5146105 | 5145722 | ID=MsG0280006700.01.T01:exon:1972;Parent=MsG0280006700.01.T01 |
| Chr2 | five_prime_UTR | 5144083 | 5144113 | 5144083 | ID=MsG0280006700.01.T01:five_prime_utr;Parent=MsG0280006700.01.T01 |
| Chr2 | five_prime_UTR | 5144207 | 5144261 | 5144207 | ID=MsG0280006700.01.T01:five_prime_utr;Parent=MsG0280006700.01.T01 |
| Chr2 | CDS | 5144262 | 5144467 | 5144262 | ID=MsG0280006700.01.T01:cds;Parent=MsG0280006700.01.T01 |
| Chr2 | CDS | 5145070 | 5145310 | 5145070 | ID=MsG0280006700.01.T01:cds;Parent=MsG0280006700.01.T01 |
| Chr2 | CDS | 5145402 | 5145522 | 5145402 | ID=MsG0280006700.01.T01:cds;Parent=MsG0280006700.01.T01 |
| Chr2 | CDS | 5145722 | 5145909 | 5145722 | ID=MsG0280006700.01.T01:cds;Parent=MsG0280006700.01.T01 |
| Chr2 | three_prime_UTR | 5145910 | 5146105 | 5145910 | ID=MsG0280006700.01.T01:three_prime_utr;Parent=MsG0280006700.01.T01 |
| Chr2 | mRNA | 5144083 | 5146102 | 5144083 | ID=MsG0280006700.01.T02;Parent=MsG0280006700.01;Name=MsG0280006700.01.T02;_AED=0.48;_eAED=0.48;_QI=179|1|1|1|1|1|4|193|251 |
| Chr2 | exon | 5144083 | 5144467 | 5144083 | ID=MsG0280006700.01.T02:exon:1973;Parent=MsG0280006700.01.T02 |
| Chr2 | exon | 5145722 | 5146102 | 5145722 | ID=MsG0280006700.01.T02:exon:1974;Parent=MsG0280006700.01.T02 |
| Chr2 | five_prime_UTR | 5144083 | 5144261 | 5144083 | ID=MsG0280006700.01.T02:five_prime_utr;Parent=MsG0280006700.01.T02 |
| Chr2 | CDS | 5144262 | 5144467 | 5144262 | ID=MsG0280006700.01.T02:cds;Parent=MsG0280006700.01.T02 |
| Chr2 | CDS | 5145070 | 5145310 | 5145070 | ID=MsG0280006700.01.T02:cds;Parent=MsG0280006700.01.T02 |
| Chr2 | CDS | 5145402 | 5145522 | 5145402 | ID=MsG0280006700.01.T02:cds;Parent=MsG0280006700.01.T02 |
| Chr2 | CDS | 5145722 | 5145909 | 5145722 | ID=MsG0280006700.01.T02:cds;Parent=MsG0280006700.01.T02 |
| Chr2 | three_prime_UTR | 5145910 | 5146102 | 5145910 | ID=MsG0280006700.01.T02:three_prime_utr;Parent=MsG0280006700.01.T02 |
| Gene Sequence |
| Protein sequence |
