AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041648.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041648.01.T01 MTR_7g115120 96.931 391 10 2 1 391 1 389 0.0 766
MsG0780041648.01.T01 MTR_1g080920 56.265 407 155 10 1 389 1 402 2.04e-130 380
MsG0780041648.01.T01 MTR_7g115140 58.960 173 49 5 99 268 53 206 1.20e-53 177
MsG0780041648.01.T01 MTR_3g109310 52.899 138 58 3 151 281 76 213 6.67e-31 120
MsG0780041648.01.T01 MTR_1g008990 58.333 120 45 2 170 286 142 259 4.23e-25 105
MsG0780041648.01.T01 MTR_1g008990 54.622 119 46 2 170 285 142 255 1.16e-21 94.0
MsG0780041648.01.T01 MTR_4g070860 40.000 115 59 1 173 287 17 121 3.56e-16 75.9
MsG0780041648.01.T01 MTR_3g110010 56.410 78 34 0 200 277 633 710 3.40e-15 77.8
MsG0780041648.01.T01 MTR_3g109982 56.579 76 33 0 202 277 651 726 6.10e-15 77.0
MsG0780041648.01.T01 MTR_3g117120 39.785 93 56 0 193 285 27 119 1.42e-14 71.2
MsG0780041648.01.T01 MTR_8g015250 40.816 98 53 1 171 268 54 146 8.07e-14 69.7
MsG0780041648.01.T01 MTR_8g086020 35.238 105 68 0 181 285 20 124 1.26e-13 68.6
MsG0780041648.01.T01 MTR_7g029400 40.816 98 53 1 171 268 64 156 1.27e-13 69.3
MsG0780041648.01.T01 MTR_6g016375 47.297 74 39 0 196 269 90 163 8.78e-13 67.0
MsG0780041648.01.T01 MTR_1g022495 29.747 158 88 3 165 309 9 156 2.81e-12 64.7
MsG0780041648.01.T01 MTR_7g017880 42.857 91 44 1 178 268 77 159 4.60e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041648.01.T01 AT5G28770 45.244 389 128 13 1 384 1 309 6.88e-72 228
MsG0780041648.01.T01 AT5G28770 44.935 385 128 13 1 384 1 302 7.94e-68 217
MsG0780041648.01.T01 AT5G28770 47.810 274 90 9 1 269 1 226 2.07e-53 178
MsG0780041648.01.T01 AT4G02640 37.615 327 147 8 1 285 1 312 2.33e-39 145
MsG0780041648.01.T01 AT4G02640 37.615 327 147 8 1 285 1 312 2.88e-39 145
MsG0780041648.01.T01 AT4G02640 37.072 321 151 7 1 285 1 306 7.15e-39 144
MsG0780041648.01.T01 AT4G02640 37.072 321 151 7 1 285 1 306 8.22e-39 144
MsG0780041648.01.T01 AT3G54620 34.293 382 162 14 1 325 1 350 1.71e-37 140
MsG0780041648.01.T01 AT5G24800 55.814 129 47 4 158 277 76 203 9.29e-35 130
MsG0780041648.01.T01 AT5G28770 43.404 235 80 9 1 230 1 187 6.18e-31 118
MsG0780041648.01.T01 AT3G54620 32.723 382 151 16 1 325 1 333 2.59e-25 106
MsG0780041648.01.T01 AT3G30530 39.796 98 56 1 171 268 59 153 6.17e-13 67.0
MsG0780041648.01.T01 AT2G04038 42.857 98 51 1 171 268 54 146 8.86e-13 66.2
MsG0780041648.01.T01 AT1G75390 37.963 108 62 1 194 301 39 141 9.63e-13 66.6
MsG0780041648.01.T01 AT2G18160 39.759 83 50 0 193 275 28 110 1.93e-12 65.5
MsG0780041648.01.T01 AT1G13600 38.776 98 54 1 171 268 67 158 2.22e-11 63.2

Find 94 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCTTCCCGATCTATTAT+TGG 0.211521 7:-93439396 None:intergenic
CTTTCAGGATGCTCTCTAAT+AGG 0.224164 7:+93438497 MsG0780041648.01.T01:intron
AAGAAAGAAAGACAAGAAAA+TGG 0.243127 7:+93436623 MsG0780041648.01.T01:exon
TATGTAGAATGCGGCCCTTC+TGG 0.245369 7:+93437941 MsG0780041648.01.T01:intron
CTGAAATAACGGAGCAATAT+TGG 0.250912 7:+93436664 MsG0780041648.01.T01:CDS
TATTGATTCTGAGGATTATC+AGG 0.285549 7:+93436884 MsG0780041648.01.T01:CDS
ATTGTAACAGCAGGTTTCTT+TGG 0.288769 7:-93438025 None:intergenic
GAGACAGTTAAAAGATTTAC+TGG 0.291659 7:+93439197 MsG0780041648.01.T01:CDS
ATATGTTCCAAACATGCTTC+TGG 0.308555 7:-93439739 None:intergenic
CAAATGAAATGAGTATTTAT+TGG 0.340718 7:+93439870 MsG0780041648.01.T01:three_prime_UTR
CTCATGGCAATAGGGATCTT+TGG 0.341962 7:+93437710 MsG0780041648.01.T01:intron
AATTCTCCCAGAAGCATGTT+TGG 0.344998 7:+93439732 MsG0780041648.01.T01:three_prime_UTR
AATTCCTGGAGATAGGAATT+AGG 0.346220 7:+93439683 MsG0780041648.01.T01:three_prime_UTR
CCATCTTATCCTTCTGAACT+TGG 0.355060 7:+93437765 MsG0780041648.01.T01:CDS
CCAAGACACTACTACTACTA+AGG 0.376800 7:-93436553 None:intergenic
CCTGCCACGGGTGGCTAGCT+TGG 0.382757 7:+93439487 MsG0780041648.01.T01:CDS
AAGATATCAAAGTTGCTGTT+GGG 0.385646 7:+93437990 MsG0780041648.01.T01:CDS
GACATTAGATTATTAGATAA+GGG 0.396715 7:-93439353 None:intergenic
TTTCAGGATGCTCTCTAATA+GGG 0.402739 7:+93438498 MsG0780041648.01.T01:intron
TCCTTCTGAACTTGGACCTC+TGG 0.404582 7:+93437773 MsG0780041648.01.T01:CDS
GCTCAAAAGTCAACAAGAAT+AGG 0.417159 7:-93439637 None:intergenic
TATTAGGTCTCTGAATTAAG+AGG 0.422615 7:+93438688 MsG0780041648.01.T01:intron
ATTCTATCACTTGTCGTCTT+CGG 0.423581 7:-93439540 None:intergenic
CTTAGATTAATTAGATATGA+TGG 0.427179 7:+93439844 MsG0780041648.01.T01:three_prime_UTR
CCAAGCTAGCCACCCGTGGC+AGG 0.428000 7:-93439487 None:intergenic
GTTGAAGTTGAAGATGAAGA+AGG 0.442163 7:-93436813 None:intergenic
GCAGCAGGTGGGAACAAGAT+AGG 0.452428 7:+93439452 MsG0780041648.01.T01:CDS
ATGGGAATGTCATTATTTGA+TGG 0.455802 7:+93439260 MsG0780041648.01.T01:CDS
GAGATACAACAAAGATGAAT+CGG 0.458250 7:+93436712 MsG0780041648.01.T01:CDS
GATGGCTGTGATCCATTGTC+AGG 0.464580 7:-93437747 None:intergenic
TATGTTCCAAACATGCTTCT+GGG 0.465520 7:-93439738 None:intergenic
GGGATCTTTGGTCAAATCTC+AGG 0.465850 7:+93437722 MsG0780041648.01.T01:intron
GGACATTAGATTATTAGATA+AGG 0.466925 7:-93439354 None:intergenic
CTGGGAAAATTCCTGGAGAT+AGG 0.474134 7:+93439676 MsG0780041648.01.T01:three_prime_UTR
AAAGATATCAAAGTTGCTGT+TGG 0.482051 7:+93437989 MsG0780041648.01.T01:CDS
GAGGGAGAGATTAATATGAA+TGG 0.483459 7:+93438088 MsG0780041648.01.T01:CDS
GGACCTCTGGCTACTTTGAA+AGG 0.489971 7:+93437786 MsG0780041648.01.T01:CDS
AATGTCTGAGGTATCATCAA+TGG 0.491343 7:+93439241 MsG0780041648.01.T01:CDS
GGCGCAAGCAAGATCAAGCT+TGG 0.492090 7:-93436919 None:intergenic
TCTGTGCTATTTGAAAGTTT+AGG 0.498965 7:+93439614 MsG0780041648.01.T01:three_prime_UTR
GTTATCAATTGCTGAAATAA+CGG 0.504761 7:+93436653 MsG0780041648.01.T01:CDS
GCAGGTTTCTTTGGCATGCA+AGG 0.507308 7:-93438016 None:intergenic
ATGTCTGAGGTATCATCAAT+GGG 0.509553 7:+93439242 MsG0780041648.01.T01:CDS
TTATTTGGATCTTCTTGCAC+AGG 0.510884 7:-93439317 None:intergenic
CTATCCTAATTCCTATCTCC+AGG 0.511568 7:-93439687 None:intergenic
AGAGGAGCCAATAATAGATC+GGG 0.512572 7:+93439389 MsG0780041648.01.T01:CDS
CAGAAGAACACCGCAGCAGG+TGG 0.514294 7:+93439440 MsG0780041648.01.T01:CDS
GCGCCGCCGTCGCTAAGTCG+AGG 0.516197 7:+93436937 MsG0780041648.01.T01:CDS
CGCCGCCGTCGCTAAGTCGA+GGG 0.517985 7:+93436938 MsG0780041648.01.T01:CDS
GAGAGGAGCCAATAATAGAT+CGG 0.524926 7:+93439388 MsG0780041648.01.T01:CDS
GAATCGGAGTGATTCAGAAT+GGG 0.529997 7:+93436728 MsG0780041648.01.T01:CDS
GGCTCCTCTCATATCATGAC+TGG 0.535600 7:-93439375 None:intergenic
CCTTAGTAGTAGTAGTGTCT+TGG 0.536050 7:+93436553 None:intergenic
GTGCAGAAGAACACCGCAGC+AGG 0.536590 7:+93439437 MsG0780041648.01.T01:CDS
CCAAGTTCAGAAGGATAAGA+TGG 0.536978 7:-93437765 None:intergenic
CAATAATAGTATTGATTCTG+AGG 0.537078 7:+93436875 MsG0780041648.01.T01:CDS
TAGGAATTAGGATAGCCAAT+AGG 0.537249 7:+93439695 MsG0780041648.01.T01:three_prime_UTR
AGATATCAAAGTTGCTGTTG+GGG 0.538293 7:+93437991 MsG0780041648.01.T01:CDS
ACTTCGAAAGCGTGCAAGGA+AGG 0.541198 7:+93436690 MsG0780041648.01.T01:CDS
ACAATCAAGTCAACAACAAG+TGG 0.544242 7:+93438043 MsG0780041648.01.T01:CDS
TGAATCGGAGTGATTCAGAA+TGG 0.545437 7:+93436727 MsG0780041648.01.T01:CDS
CATCTTCAGAGTCGAATTCG+TGG 0.545773 7:+93439512 MsG0780041648.01.T01:CDS
GCCAGAGGTCCAAGTTCAGA+AGG 0.550767 7:-93437774 None:intergenic
AACAAATTCCCTGCCACGGG+TGG 0.555330 7:+93439478 MsG0780041648.01.T01:CDS
AAGATTTACTGGATCGAACC+CGG 0.558877 7:+93439208 MsG0780041648.01.T01:CDS
CAAGCTAGCCACCCGTGGCA+GGG 0.562427 7:-93439486 None:intergenic
GTTGACTTCGAAAGCGTGCA+AGG 0.565558 7:+93436686 MsG0780041648.01.T01:CDS
TCTAAGTTACACATCAGTCA+TGG 0.569320 7:-93439827 None:intergenic
CAGACATTGCATTAAACACC+GGG 0.574406 7:-93439226 None:intergenic
TAGATGGATCGTTTCCAGAA+GGG 0.575636 7:-93437955 None:intergenic
ATCAGACGATGAGGAAGCTG+AGG 0.576946 7:+93438069 MsG0780041648.01.T01:CDS
TTTAACTGAGCTTGAAACAC+AGG 0.587276 7:+93438558 MsG0780041648.01.T01:CDS
GTTGACTTGATTGTAACAGC+AGG 0.587759 7:-93438034 None:intergenic
ACGAACAAATTCCCTGCCAC+GGG 0.590000 7:+93439475 MsG0780041648.01.T01:CDS
TTAGATGGATCGTTTCCAGA+AGG 0.592645 7:-93437956 None:intergenic
TCAGACATTGCATTAAACAC+CGG 0.598502 7:-93439227 None:intergenic
AAATCTCAGGATCCTGACAA+TGG 0.601386 7:+93437735 MsG0780041648.01.T01:CDS
GACGAACAAATTCCCTGCCA+CGG 0.607260 7:+93439474 MsG0780041648.01.T01:CDS
TGTTGAAACATTAAGAGCAA+AGG 0.611502 7:+93438798 MsG0780041648.01.T01:CDS
CAAGACACTACTACTACTAA+GGG 0.612285 7:-93436552 None:intergenic
TATCTTGTTCCCACCTGCTG+CGG 0.616019 7:-93439450 None:intergenic
GCATCAGCTGATGACTCAGA+AGG 0.620005 7:-93439287 None:intergenic
CTGATGCAAAACGAGTAAGA+AGG 0.628581 7:+93438122 MsG0780041648.01.T01:CDS
TTTGAGATTGACATCAACGG+TGG 0.645017 7:-93436850 None:intergenic
TCAGACGATGAGGAAGCTGA+GGG 0.659901 7:+93438070 MsG0780041648.01.T01:CDS
ATGTCCAGTCATGATATGAG+AGG 0.664118 7:+93439371 MsG0780041648.01.T01:CDS
GGTGTTTAATGCAATGTCTG+AGG 0.664829 7:+93439229 MsG0780041648.01.T01:CDS
AGAAGAACACCGCAGCAGGT+GGG 0.666761 7:+93439441 MsG0780041648.01.T01:CDS
TACCCTCGACTTAGCGACGG+CGG 0.667299 7:-93436940 None:intergenic
AAGTGGATCATCAGACGATG+AGG 0.668470 7:+93438060 MsG0780041648.01.T01:CDS
TGTTCCAAGCTAGCCACCCG+TGG 0.670248 7:-93439491 None:intergenic
ATATACCCTCGACTTAGCGA+CGG 0.692877 7:-93436943 None:intergenic
AAACCTTTCAAAGTAGCCAG+AGG 0.696494 7:-93437789 None:intergenic
CTTCAGAGTCGAATTCGTGG+CGG 0.751614 7:+93439515 MsG0780041648.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATATTCTATCTTATT+AGG + Chr7:93438672-93438691 MsG0780041648.01.T01:intron 10.0%
!! AACAAAAAAAAAAAAATGCA+TGG - Chr7:93437012-93437031 None:intergenic 15.0%
!! ATAGTAAATTAAATTGTATC+AGG - Chr7:93437048-93437067 None:intergenic 15.0%
!! TAGTAAATTAAATTGTATCA+GGG - Chr7:93437047-93437066 None:intergenic 15.0%
!! TGTATAAAATACTTAATTCA+GGG - Chr7:93438449-93438468 None:intergenic 15.0%
!! TTGTATAAAATACTTAATTC+AGG - Chr7:93438450-93438469 None:intergenic 15.0%
!!! AATATAGCTTTTGAATATTA+CGG - Chr7:93437184-93437203 None:intergenic 15.0%
!!! ATAAGTTATTTCTATAATCA+AGG - Chr7:93438389-93438408 None:intergenic 15.0%
!!! TCTTTATTTTGTAATTTAGA+TGG - Chr7:93437974-93437993 None:intergenic 15.0%
!! AAAAACGAGAACAATATAAA+GGG - Chr7:93439159-93439178 None:intergenic 20.0%
!! CAAATGAAATGAGTATTTAT+TGG + Chr7:93439870-93439889 MsG0780041648.01.T01:three_prime_UTR 20.0%
!! CTTAGATTAATTAGATATGA+TGG + Chr7:93439844-93439863 MsG0780041648.01.T01:three_prime_UTR 20.0%
!! GACATTAGATTATTAGATAA+GGG - Chr7:93439356-93439375 None:intergenic 20.0%
!! TAAAAACGAGAACAATATAA+AGG - Chr7:93439160-93439179 None:intergenic 20.0%
!! TTAATTCTGTCAACATATAT+GGG - Chr7:93437344-93437363 None:intergenic 20.0%
!! TTTAATTCTGTCAACATATA+TGG - Chr7:93437345-93437364 None:intergenic 20.0%
!!! AGTAGATCACAATTTTTTAA+GGG + Chr7:93437891-93437910 MsG0780041648.01.T01:intron 20.0%
!!! TACTATATATTTTTTGTGTG+TGG + Chr7:93437062-93437081 MsG0780041648.01.T01:intron 20.0%
!!! TAGTAGATCACAATTTTTTA+AGG + Chr7:93437890-93437909 MsG0780041648.01.T01:intron 20.0%
!!! TTATATTGTTCTCGTTTTTA+AGG + Chr7:93439160-93439179 MsG0780041648.01.T01:intron 20.0%
!!! TTTTATTCATATGTAGAATG+CGG + Chr7:93437932-93437951 MsG0780041648.01.T01:intron 20.0%
! AAACATGGTAAATACATTGA+AGG + Chr7:93437862-93437881 MsG0780041648.01.T01:intron 25.0%
! AAACTATCATAGAGATTTCA+CGG - Chr7:93438318-93438337 None:intergenic 25.0%
! AACACTTGAGAAATTATTTG+AGG + Chr7:93438245-93438264 MsG0780041648.01.T01:intron 25.0%
! AACTACTTTACTAGTAAAAC+TGG + Chr7:93438835-93438854 MsG0780041648.01.T01:intron 25.0%
! AAGAAAGAAAGACAAGAAAA+TGG + Chr7:93436623-93436642 MsG0780041648.01.T01:exon 25.0%
! ACACATAAATCAATTGGAAA+TGG - Chr7:93439106-93439125 None:intergenic 25.0%
! ACACTTGAGAAATTATTTGA+GGG + Chr7:93438246-93438265 MsG0780041648.01.T01:intron 25.0%
! ATTTGAACGACTAATTAAGA+TGG - Chr7:93438642-93438661 None:intergenic 25.0%
! GGACATTAGATTATTAGATA+AGG - Chr7:93439357-93439376 None:intergenic 25.0%
! GGTTGAAAAAAGTGATTATT+TGG - Chr7:93439335-93439354 None:intergenic 25.0%
! GTTATCAATTGCTGAAATAA+CGG + Chr7:93436653-93436672 MsG0780041648.01.T01:CDS 25.0%
! TCAAATTAGTCAATCTAAAC+AGG - Chr7:93438208-93438227 None:intergenic 25.0%
!! AGCAGAATTGTTGAATTTTT+GGG - Chr7:93438752-93438771 None:intergenic 25.0%
!! ATGTTTTCTTTTACTACTCA+TGG + Chr7:93437694-93437713 MsG0780041648.01.T01:intron 25.0%
!! TCCAATTGATTTATGTGTAT+TGG + Chr7:93439108-93439127 MsG0780041648.01.T01:intron 25.0%
!!! AGCTAGTCTAATTTTTTAAC+TGG + Chr7:93439657-93439676 MsG0780041648.01.T01:three_prime_UTR 25.0%
!!! CAATAATAGTATTGATTCTG+AGG + Chr7:93436875-93436894 MsG0780041648.01.T01:CDS 25.0%
!!! GCTAGTCTAATTTTTTAACT+GGG + Chr7:93439658-93439677 MsG0780041648.01.T01:three_prime_UTR 25.0%
!!! TAGTTTTGATTCTTCAAAGT+TGG + Chr7:93437616-93437635 MsG0780041648.01.T01:intron 25.0%
AAAGATATCAAAGTTGCTGT+TGG + Chr7:93437989-93438008 MsG0780041648.01.T01:CDS 30.0%
AACTATCATAGAGATTTCAC+GGG - Chr7:93438317-93438336 None:intergenic 30.0%
AATAATAGAAGCCTACTACT+TGG + Chr7:93438864-93438883 MsG0780041648.01.T01:intron 30.0%
ATGGGAATGTCATTATTTGA+TGG + Chr7:93439260-93439279 MsG0780041648.01.T01:CDS 30.0%
ATGTGACTTTGGTAAAATCA+CGG - Chr7:93437294-93437313 None:intergenic 30.0%
GAGACAGTTAAAAGATTTAC+TGG + Chr7:93439197-93439216 MsG0780041648.01.T01:CDS 30.0%
GAGATACAACAAAGATGAAT+CGG + Chr7:93436712-93436731 MsG0780041648.01.T01:CDS 30.0%
GCCAATACACATAAATCAAT+TGG - Chr7:93439112-93439131 None:intergenic 30.0%
GTTTATTATCGATGTGACTT+TGG - Chr7:93437305-93437324 None:intergenic 30.0%
TACGTGTATGTTTGGATATT+CGG + Chr7:93437139-93437158 MsG0780041648.01.T01:intron 30.0%
TATTAGGTCTCTGAATTAAG+AGG + Chr7:93438688-93438707 MsG0780041648.01.T01:intron 30.0%
TGGTAAATACATTGAAGGAA+AGG + Chr7:93437867-93437886 MsG0780041648.01.T01:intron 30.0%
TGTTGAAACATTAAGAGCAA+AGG + Chr7:93438798-93438817 MsG0780041648.01.T01:CDS 30.0%
! AAGATATCAAAGTTGCTGTT+GGG + Chr7:93437990-93438009 MsG0780041648.01.T01:CDS 30.0%
! ATAGCTTTTGAATATTACGG+TGG - Chr7:93437181-93437200 None:intergenic 30.0%
! CACAATTTTACGTGTATGTT+TGG + Chr7:93437131-93437150 MsG0780041648.01.T01:intron 30.0%
! CAGCAGAATTGTTGAATTTT+TGG - Chr7:93438753-93438772 None:intergenic 30.0%
! GTGTGCATATGTTAATCTTT+TGG - Chr7:93437114-93437133 None:intergenic 30.0%
! GTTGTTCACGTAAAAACTTT+TGG - Chr7:93436758-93436777 None:intergenic 30.0%
! TATATGCTGCTATTCTTTTC+TGG - Chr7:93436579-93436598 None:intergenic 30.0%
! TTTTACTACTCATGGCAATA+GGG + Chr7:93437702-93437721 MsG0780041648.01.T01:intron 30.0%
!! ATTAATTTGCGAAATTGGGA+TGG + Chr7:93437264-93437283 MsG0780041648.01.T01:intron 30.0%
!! GGGAGAATTTGTTTCTTTTA+AGG - Chr7:93439721-93439740 None:intergenic 30.0%
!! TATTGATTCTGAGGATTATC+AGG + Chr7:93436884-93436903 MsG0780041648.01.T01:CDS 30.0%
!! TCTGTGCTATTTGAAAGTTT+AGG + Chr7:93439614-93439633 MsG0780041648.01.T01:three_prime_UTR 30.0%
!! TTTTTAACTGGGAAAATTCC+TGG + Chr7:93439669-93439688 MsG0780041648.01.T01:three_prime_UTR 30.0%
!!! GATTTTGAGATTGACATCAA+CGG - Chr7:93436856-93436875 None:intergenic 30.0%
!!! TTGTTTCTTTTAAGGCCTAT+TGG - Chr7:93439713-93439732 None:intergenic 30.0%
AAACATGCACAAAATCACGA+TGG - Chr7:93437231-93437250 None:intergenic 35.0%
AAATTATTTGAGGGAGATCG+TGG + Chr7:93438255-93438274 MsG0780041648.01.T01:intron 35.0%
AAGCTTAGATGAAAACCTAG+TGG - Chr7:93437487-93437506 None:intergenic 35.0%
AATGCTTCCCGATCTATTAT+TGG - Chr7:93439399-93439418 None:intergenic 35.0%
AATTCCTGGAGATAGGAATT+AGG + Chr7:93439683-93439702 MsG0780041648.01.T01:three_prime_UTR 35.0%
ACAATCAAGTCAACAACAAG+TGG + Chr7:93438043-93438062 MsG0780041648.01.T01:CDS 35.0%
ACTAATTAACAAGCACTCCT+TGG - Chr7:93437546-93437565 None:intergenic 35.0%
AGAAGAGAATGCAGAAGAAA+TGG - Chr7:93438606-93438625 None:intergenic 35.0%
AGAATCTTGATCCAAGTAGT+AGG - Chr7:93438878-93438897 None:intergenic 35.0%
AGATACTAGCACTTGTTCTA+AGG - Chr7:93437391-93437410 None:intergenic 35.0%
AGTTTACACAGTCAGTACAT+CGG + Chr7:93438917-93438936 MsG0780041648.01.T01:intron 35.0%
ATATGTTCCAAACATGCTTC+TGG - Chr7:93439742-93439761 None:intergenic 35.0%
ATTCTATCACTTGTCGTCTT+CGG - Chr7:93439543-93439562 None:intergenic 35.0%
ATTGTAACAGCAGGTTTCTT+TGG - Chr7:93438028-93438047 None:intergenic 35.0%
CTAATTAACAAGCACTCCTT+GGG - Chr7:93437545-93437564 None:intergenic 35.0%
GAATGCATGAATCATGCAAT+TGG - Chr7:93437465-93437484 None:intergenic 35.0%
GAGGGAGAGATTAATATGAA+TGG + Chr7:93438088-93438107 MsG0780041648.01.T01:CDS 35.0%
GCTCAAAAGTCAACAAGAAT+AGG - Chr7:93439640-93439659 None:intergenic 35.0%
GTGACTGCTTAGATTAAGAT+CGG + Chr7:93438939-93438958 MsG0780041648.01.T01:intron 35.0%
GTGCATGTTTGATATTACAG+CGG + Chr7:93437241-93437260 MsG0780041648.01.T01:intron 35.0%
GTTGAAGTTGAAGATGAAGA+AGG - Chr7:93436816-93436835 None:intergenic 35.0%
TAGGAATTAGGATAGCCAAT+AGG + Chr7:93439695-93439714 MsG0780041648.01.T01:three_prime_UTR 35.0%
TATGTTCCAAACATGCTTCT+GGG - Chr7:93439741-93439760 None:intergenic 35.0%
TCAGACATTGCATTAAACAC+CGG - Chr7:93439230-93439249 None:intergenic 35.0%
TCCAAACAATTATCAACCCA+AGG + Chr7:93437526-93437545 MsG0780041648.01.T01:intron 35.0%
TCTAAGTTACACATCAGTCA+TGG - Chr7:93439830-93439849 None:intergenic 35.0%
TGGATATTCGGTCAAAATCA+CGG + Chr7:93437151-93437170 MsG0780041648.01.T01:intron 35.0%
TGTCTGCATATGTGAAAACA+TGG + Chr7:93437847-93437866 MsG0780041648.01.T01:intron 35.0%
TTATTTGGATCTTCTTGCAC+AGG - Chr7:93439320-93439339 None:intergenic 35.0%
TTTAACTGAGCTTGAAACAC+AGG + Chr7:93438558-93438577 MsG0780041648.01.T01:CDS 35.0%
TTTCAGGATGCTCTCTAATA+GGG + Chr7:93438498-93438517 MsG0780041648.01.T01:intron 35.0%
! AATGTCTGAGGTATCATCAA+TGG + Chr7:93439241-93439260 MsG0780041648.01.T01:CDS 35.0%
! AATTGGAAATGGATTCCTTC+TGG - Chr7:93439095-93439114 None:intergenic 35.0%
! AGATATCAAAGTTGCTGTTG+GGG + Chr7:93437991-93438010 MsG0780041648.01.T01:CDS 35.0%
! ATGTCTGAGGTATCATCAAT+GGG + Chr7:93439242-93439261 MsG0780041648.01.T01:CDS 35.0%
! CTGAAATAACGGAGCAATAT+TGG + Chr7:93436664-93436683 MsG0780041648.01.T01:CDS 35.0%
! CTTTTACTACTCATGGCAAT+AGG + Chr7:93437701-93437720 MsG0780041648.01.T01:intron 35.0%
! GTTTTGCACAAGAAATCTTC+TGG + Chr7:93438155-93438174 MsG0780041648.01.T01:intron 35.0%
! TTACTCGTTTTGCATCAGTA+GGG - Chr7:93438120-93438139 None:intergenic 35.0%
!! AGCGGATTAATTTGCGAAAT+TGG + Chr7:93437259-93437278 MsG0780041648.01.T01:intron 35.0%
!! GCGGATTAATTTGCGAAATT+GGG + Chr7:93437260-93437279 MsG0780041648.01.T01:intron 35.0%
!! TCCTTGGGTTGATAATTGTT+TGG - Chr7:93437530-93437549 None:intergenic 35.0%
!!! TCTCGTTTTTAAGGTGAAGA+TGG + Chr7:93439169-93439188 MsG0780041648.01.T01:intron 35.0%
AAACCTTTCAAAGTAGCCAG+AGG - Chr7:93437792-93437811 None:intergenic 40.0%
AAATCTCAGGATCCTGACAA+TGG + Chr7:93437735-93437754 MsG0780041648.01.T01:CDS 40.0%
AAGATTTACTGGATCGAACC+CGG + Chr7:93439208-93439227 MsG0780041648.01.T01:CDS 40.0%
AGAGGAGCCAATAATAGATC+GGG + Chr7:93439389-93439408 MsG0780041648.01.T01:CDS 40.0%
ATGTCCAGTCATGATATGAG+AGG + Chr7:93439371-93439390 MsG0780041648.01.T01:CDS 40.0%
CAGACATTGCATTAAACACC+GGG - Chr7:93439229-93439248 None:intergenic 40.0%
CATGATTCATGCATTCCACT+AGG + Chr7:93437469-93437488 MsG0780041648.01.T01:intron 40.0%
CCAAGTTCAGAAGGATAAGA+TGG - Chr7:93437768-93437787 None:intergenic 40.0%
CCATCTTATCCTTCTGAACT+TGG + Chr7:93437765-93437784 MsG0780041648.01.T01:CDS 40.0%
CTATCCTAATTCCTATCTCC+AGG - Chr7:93439690-93439709 None:intergenic 40.0%
CTGATGCAAAACGAGTAAGA+AGG + Chr7:93438122-93438141 MsG0780041648.01.T01:CDS 40.0%
CTTTCAGGATGCTCTCTAAT+AGG + Chr7:93438497-93438516 MsG0780041648.01.T01:intron 40.0%
GAATCGGAGTGATTCAGAAT+GGG + Chr7:93436728-93436747 MsG0780041648.01.T01:CDS 40.0%
GAGAGGAGCCAATAATAGAT+CGG + Chr7:93439388-93439407 MsG0780041648.01.T01:CDS 40.0%
GGTGTTTAATGCAATGTCTG+AGG + Chr7:93439229-93439248 MsG0780041648.01.T01:CDS 40.0%
GGTTACTACTGGATTCAGAT+TGG - Chr7:93439038-93439057 None:intergenic 40.0%
TAGATGGATCGTTTCCAGAA+GGG - Chr7:93437958-93437977 None:intergenic 40.0%
TGAATCGGAGTGATTCAGAA+TGG + Chr7:93436727-93436746 MsG0780041648.01.T01:CDS 40.0%
TTAGATGGATCGTTTCCAGA+AGG - Chr7:93437959-93437978 None:intergenic 40.0%
! AATTCTCCCAGAAGCATGTT+TGG + Chr7:93439732-93439751 MsG0780041648.01.T01:three_prime_UTR 40.0%
! CTTACTCGTTTTGCATCAGT+AGG - Chr7:93438121-93438140 None:intergenic 40.0%
! GATTCCTTCTGGTTGGAATA+TGG - Chr7:93439084-93439103 None:intergenic 40.0%
! TTTGAGATTGACATCAACGG+TGG - Chr7:93436853-93436872 None:intergenic 40.0%
!! ACTAGCACTTGTTCTAAGGT+AGG - Chr7:93437387-93437406 None:intergenic 40.0%
!! ACTTGTTCTAAGGTAGGAGA+AGG - Chr7:93437381-93437400 None:intergenic 40.0%
!! CTATTAGAGAGCATCCTGAA+AGG - Chr7:93438499-93438518 None:intergenic 40.0%
!! GTACTGACTGTGTAAACTCA+AGG - Chr7:93438915-93438934 None:intergenic 40.0%
!! GTTGACTTGATTGTAACAGC+AGG - Chr7:93438037-93438056 None:intergenic 40.0%
AAGTGGATCATCAGACGATG+AGG + Chr7:93438060-93438079 MsG0780041648.01.T01:CDS 45.0%
AGGCAATGTCATCAGGCATT+AGG - Chr7:93438479-93438498 None:intergenic 45.0%
ATATACCCTCGACTTAGCGA+CGG - Chr7:93436946-93436965 None:intergenic 45.0%
ATTCAACCTCTGTGGTGCTT+TGG + Chr7:93438971-93438990 MsG0780041648.01.T01:intron 45.0%
CATCTTCAGAGTCGAATTCG+TGG + Chr7:93439512-93439531 MsG0780041648.01.T01:CDS 45.0%
CTCATGGCAATAGGGATCTT+TGG + Chr7:93437710-93437729 MsG0780041648.01.T01:intron 45.0%
CTGGGAAAATTCCTGGAGAT+AGG + Chr7:93439676-93439695 MsG0780041648.01.T01:three_prime_UTR 45.0%
GGGATCTTTGGTCAAATCTC+AGG + Chr7:93437722-93437741 MsG0780041648.01.T01:intron 45.0%
GTGTGGCAATCTGCTTTCAT+GGG + Chr7:93437079-93437098 MsG0780041648.01.T01:intron 45.0%
TCCTGAAAGGCAATGTCATC+AGG - Chr7:93438486-93438505 None:intergenic 45.0%
TGCTTGAGATTCAACCTCTG+TGG + Chr7:93438963-93438982 MsG0780041648.01.T01:intron 45.0%
TGTGTGGCAATCTGCTTTCA+TGG + Chr7:93437078-93437097 MsG0780041648.01.T01:intron 45.0%
! GAAAATCCAAAGCACCACAG+AGG - Chr7:93438980-93438999 None:intergenic 45.0%
! GGAAATGGATTCCTTCTGGT+TGG - Chr7:93439091-93439110 None:intergenic 45.0%
ACGAACAAATTCCCTGCCAC+GGG + Chr7:93439475-93439494 MsG0780041648.01.T01:CDS 50.0%
AGTCAGGCAAGGGTTACTAC+TGG - Chr7:93439049-93439068 None:intergenic 50.0%
ATCAGACGATGAGGAAGCTG+AGG + Chr7:93438069-93438088 MsG0780041648.01.T01:CDS 50.0%
CCAGCCATATTCCAACCAGA+AGG + Chr7:93439077-93439096 MsG0780041648.01.T01:intron 50.0%
CTTCAGAGTCGAATTCGTGG+CGG + Chr7:93439515-93439534 MsG0780041648.01.T01:CDS 50.0%
GACGAACAAATTCCCTGCCA+CGG + Chr7:93439474-93439493 MsG0780041648.01.T01:CDS 50.0%
GATGGCTGTGATCCATTGTC+AGG - Chr7:93437750-93437769 None:intergenic 50.0%
GCAGGTTTCTTTGGCATGCA+AGG - Chr7:93438019-93438038 None:intergenic 50.0%
GCATCAGCTGATGACTCAGA+AGG - Chr7:93439290-93439309 None:intergenic 50.0%
GCCTGATGACATTGCCTTTC+AGG + Chr7:93438482-93438501 MsG0780041648.01.T01:intron 50.0%
GGCTCCTCTCATATCATGAC+TGG - Chr7:93439378-93439397 None:intergenic 50.0%
TATCTTGTTCCCACCTGCTG+CGG - Chr7:93439453-93439472 None:intergenic 50.0%
TATGTAGAATGCGGCCCTTC+TGG + Chr7:93437941-93437960 MsG0780041648.01.T01:intron 50.0%
TCAGACGATGAGGAAGCTGA+GGG + Chr7:93438070-93438089 MsG0780041648.01.T01:CDS 50.0%
TCCTTCTGAACTTGGACCTC+TGG + Chr7:93437773-93437792 MsG0780041648.01.T01:CDS 50.0%
! ACTTCGAAAGCGTGCAAGGA+AGG + Chr7:93436690-93436709 MsG0780041648.01.T01:CDS 50.0%
! CCTTCTGGTTGGAATATGGC+TGG - Chr7:93439080-93439099 None:intergenic 50.0%
! GGACCTCTGGCTACTTTGAA+AGG + Chr7:93437786-93437805 MsG0780041648.01.T01:CDS 50.0%
! GTTGACTTCGAAAGCGTGCA+AGG + Chr7:93436686-93436705 MsG0780041648.01.T01:CDS 50.0%
AACAAATTCCCTGCCACGGG+TGG + Chr7:93439478-93439497 MsG0780041648.01.T01:CDS 55.0%
AGAAGAACACCGCAGCAGGT+GGG + Chr7:93439441-93439460 MsG0780041648.01.T01:CDS 55.0%
ATGGCTGGATTCACGCAGTC+AGG - Chr7:93439065-93439084 None:intergenic 55.0%
GCAGCAGGTGGGAACAAGAT+AGG + Chr7:93439452-93439471 MsG0780041648.01.T01:CDS 55.0%
GCCAGAGGTCCAAGTTCAGA+AGG - Chr7:93437777-93437796 None:intergenic 55.0%
GGATTCACGCAGTCAGGCAA+GGG - Chr7:93439059-93439078 None:intergenic 55.0%
GGCGCAAGCAAGATCAAGCT+TGG - Chr7:93436922-93436941 None:intergenic 55.0%
TGGATTCACGCAGTCAGGCA+AGG - Chr7:93439060-93439079 None:intergenic 55.0%
CAGAAGAACACCGCAGCAGG+TGG + Chr7:93439440-93439459 MsG0780041648.01.T01:CDS 60.0%
GTGCAGAAGAACACCGCAGC+AGG + Chr7:93439437-93439456 MsG0780041648.01.T01:CDS 60.0%
TACCCTCGACTTAGCGACGG+CGG - Chr7:93436943-93436962 None:intergenic 60.0%
TGTTCCAAGCTAGCCACCCG+TGG - Chr7:93439494-93439513 None:intergenic 60.0%
CAAGCTAGCCACCCGTGGCA+GGG - Chr7:93439489-93439508 None:intergenic 65.0%
CCAAGCTAGCCACCCGTGGC+AGG - Chr7:93439490-93439509 None:intergenic 70.0%
CGCCGCCGTCGCTAAGTCGA+GGG + Chr7:93436938-93436957 MsG0780041648.01.T01:CDS 70.0%
! CCTGCCACGGGTGGCTAGCT+TGG + Chr7:93439487-93439506 MsG0780041648.01.T01:CDS 70.0%
GCGCCGCCGTCGCTAAGTCG+AGG + Chr7:93436937-93436956 MsG0780041648.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 93436555 93439912 93436555 ID=MsG0780041648.01;Name=MsG0780041648.01
Chr7 mRNA 93436555 93439912 93436555 ID=MsG0780041648.01.T01;Parent=MsG0780041648.01;Name=MsG0780041648.01.T01;_AED=0.49;_eAED=0.49;_QI=87|1|1|1|1|1|6|356|391
Chr7 exon 93436555 93436959 93436555 ID=MsG0780041648.01.T01:exon:20465;Parent=MsG0780041648.01.T01
Chr7 exon 93437723 93437807 93437723 ID=MsG0780041648.01.T01:exon:20466;Parent=MsG0780041648.01.T01
Chr7 exon 93437948 93438143 93437948 ID=MsG0780041648.01.T01:exon:20467;Parent=MsG0780041648.01.T01
Chr7 exon 93438504 93438579 93438504 ID=MsG0780041648.01.T01:exon:20468;Parent=MsG0780041648.01.T01
Chr7 exon 93438694 93438819 93438694 ID=MsG0780041648.01.T01:exon:20469;Parent=MsG0780041648.01.T01
Chr7 exon 93439182 93439912 93439182 ID=MsG0780041648.01.T01:exon:20470;Parent=MsG0780041648.01.T01
Chr7 five_prime_UTR 93436555 93436641 93436555 ID=MsG0780041648.01.T01:five_prime_utr;Parent=MsG0780041648.01.T01
Chr7 CDS 93436642 93436959 93436642 ID=MsG0780041648.01.T01:cds;Parent=MsG0780041648.01.T01
Chr7 CDS 93437723 93437807 93437723 ID=MsG0780041648.01.T01:cds;Parent=MsG0780041648.01.T01
Chr7 CDS 93437948 93438143 93437948 ID=MsG0780041648.01.T01:cds;Parent=MsG0780041648.01.T01
Chr7 CDS 93438504 93438579 93438504 ID=MsG0780041648.01.T01:cds;Parent=MsG0780041648.01.T01
Chr7 CDS 93438694 93438819 93438694 ID=MsG0780041648.01.T01:cds;Parent=MsG0780041648.01.T01
Chr7 CDS 93439182 93439556 93439182 ID=MsG0780041648.01.T01:cds;Parent=MsG0780041648.01.T01
Chr7 three_prime_UTR 93439557 93439912 93439557 ID=MsG0780041648.01.T01:three_prime_utr;Parent=MsG0780041648.01.T01
Gene Sequence

>MsG0780041648.01.T01

ATGGAAAGAGTGTTATCAATTGCTGAAATAACGGAGCAATATTGGTTGACTTCGAAAGCGTGCAAGGAAGGAGATACAACAAAGATGAATCGGAGTGATTCAGAATGGGCTTTCCAAAAGTTTTTACGTGAACAACAAGCTGCTGAAGAAGCAGAAGCTGCTACTGCAAAGCCTTCTTCATCTTCAACTTCAACTTCAACTTCTTCTTCCACCGTTGATGTCAATCTCAAAATCAATAATAGTATTGATTCTGAGGATTATCAGGCTCTTCTCAAGACCAAGCTTGATCTTGCTTGCGCCGCCGTCGCTAAGTCGAGGGGATCTTTGGTCAAATCTCAGGATCCTGACAATGGATCACAGCCATCTTATCCTTCTGAACTTGGACCTCTGGCTACTTTGAAAGAATGCGGCCCTTCTGGAAACGATCCATCTAAATTACAAAATAAAGATATCAAAGTTGCTGTTGGGGTTCCTTGCATGCCAAAGAAACCTGCTGTTACAATCAAGTCAACAACAAGTGGATCATCAGACGATGAGGAAGCTGAGGGAGAGATTAATATGAATGGAGACAACCCTACTGATGCAAAACGAGTAAGAAGGATGCTCTCTAATAGGGAATCAGCTAGACGCTCAAGACGAAGAAAGCAAGCTCATTTAACTGAGCTTGAAACACAGGTCTCTGAATTAAGAGGTGAAAATTCTTCATTGTTAAAGCGTTTAACAGATGTGACCCAAAAATTCAACAATTCTGCTGTTGACAACAGAATATTAAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACAGTTAAAAGATTTACTGGATCGAACCCGGTGTTTAATGCAATGTCTGAGGTATCATCAATGGGAATGTCATTATTTGATGGAAGTCCTTCTGAGTCATCAGCTGATGCATCTGTGCCTGTGCAAGAAGATCCAAATAATCACTTTTTTCAACCCTTATCTAATAATCTAATGTCCAGTCATGATATGAGAGGAGCCAATAATAGATCGGGAAGCATTATTTCTTCAGCTGAAAGTGTGCAGAAGAACACCGCAGCAGGTGGGAACAAGATAGGACGAACAAATTCCCTGCCACGGGTGGCTAGCTTGGAACATCTTCAGAGTCGAATTCGTGGCGGTGCCGAAGACGACAAGTGA
Protein sequence

>MsG0780041648.01.T01

MERVLSIAEITEQYWLTSKACKEGDTTKMNRSDSEWAFQKFLREQQAAEEAEAATAKPSSSSTSTSTSSSTVDVNLKINNSIDSEDYQALLKTKLDLACAAVAKSRGSLVKSQDPDNGSQPSYPSELGPLATLKECGPSGNDPSKLQNKDIKVAVGVPCMPKKPAVTIKSTTSGSSDDEEAEGEINMNGDNPTDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSELRGENSSLLKRLTDVTQKFNNSAVDNRILKADVETLRAKVKMAEETVKRFTGSNPVFNAMSEVSSMGMSLFDGSPSESSADASVPVQEDPNNHFFQPLSNNLMSSHDMRGANNRSGSIISSAESVQKNTAAGGNKIGRTNSLPRVASLEHLQSRIRGGAEDDK*