AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016009.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016009.01.T01 MTR_3g081440 94.942 257 13 0 1 257 1 257 0.0 518
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016009.01.T01 AT4G32960 66.809 235 75 2 11 245 16 247 2.64e-119 342
MsG0380016009.01.T01 AT4G32970 57.917 240 90 5 1 240 8 236 1.00e-90 281

Find 60 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTCTGATTCCGTTTCT+TGG 0.172090 3:-77882647 MsG0380016009.01.T01:CDS
ACCTTCTTCACAAGTGATTT+AGG 0.250650 3:+77880252 None:intergenic
AGCATTAACAAAGAGAATTA+TGG 0.272594 3:+77882710 None:intergenic
CATCAAAAGTGAAGAGCTTC+TGG 0.319023 3:+77880478 None:intergenic
TGCAGCAATGCGAGGACTTT+CGG 0.328713 3:-77880812 MsG0380016009.01.T01:CDS
TGAATATGAGGGTTATATCT+TGG 0.373630 3:-77880370 MsG0380016009.01.T01:CDS
TGAATATGTTACTGAATATG+AGG 0.373834 3:-77880382 MsG0380016009.01.T01:CDS
CCAGTGAATCATAGATCTCT+TGG 0.376722 3:+77880415 None:intergenic
TCTCTCTGATTCCGTTTCTT+GGG 0.386328 3:-77882646 MsG0380016009.01.T01:intron
AGCTAAGAAATCCCGTATGC+AGG 0.439303 3:-77880731 MsG0380016009.01.T01:CDS
CAGTGAATCATAGATCTCTT+GGG 0.452851 3:+77880416 None:intergenic
ACCTAAATCACTTGTGAAGA+AGG 0.463492 3:-77880253 MsG0380016009.01.T01:CDS
TTCATCTCCGCCATGGATTG+TGG 0.467873 3:+77882795 None:intergenic
CATTATTGATTCGTGAAGGT+TGG 0.472386 3:+77882847 None:intergenic
TTAAAATGCGACCCTGCATA+CGG 0.480619 3:+77880719 None:intergenic
AGCGAAATGGAAGGGGTTGA+AGG 0.485605 3:-77882891 None:intergenic
TTCACAGGCCACTGATGTCG+TGG 0.489353 3:+77880501 None:intergenic
ACGAGTGAAGGGTCTTCCAT+TGG 0.502333 3:+77882752 None:intergenic
CGAGTGAAGGGTCTTCCATT+GGG 0.506995 3:+77882753 None:intergenic
CGGAACAAAGTAGTAAGGTC+TGG 0.516465 3:+77880769 None:intergenic
GAAACGATGTTGAGGATTGA+TGG 0.517981 3:+77882680 None:intergenic
CCAAGAGATCTATGATTCAC+TGG 0.521036 3:-77880415 MsG0380016009.01.T01:CDS
GTGAAGAGCTTCTGGTTCAC+AGG 0.521567 3:+77880486 None:intergenic
AGCACCTTTCATCTCCGCCA+TGG 0.528589 3:+77882788 None:intergenic
TCTTCCATTGGGTCTACCAC+TGG 0.536430 3:+77882764 None:intergenic
ATGTATCTTCATGACAAGCC+TGG 0.542728 3:-77880453 MsG0380016009.01.T01:CDS
ACTTGTGAAGAAGGTTCCTC+AGG 0.543838 3:-77880244 MsG0380016009.01.T01:CDS
GGAATGAATTACCCAAGAAA+CGG 0.545802 3:+77882635 None:intergenic
ACATTATCTTCAGTGAGCAT+TGG 0.548047 3:+77880216 None:intergenic
TATATCTTGGAGAGTGGACA+AGG 0.548282 3:-77880357 MsG0380016009.01.T01:CDS
CAATCCATGGCGGAGATGAA+AGG 0.552540 3:-77882792 MsG0380016009.01.T01:CDS
GCTAAGAAATCCCGTATGCA+GGG 0.556402 3:-77880730 MsG0380016009.01.T01:CDS
CGACATTGATCCACAATCCA+TGG 0.559837 3:-77882805 MsG0380016009.01.T01:CDS
CAAGTCGGAACAAAGTAGTA+AGG 0.561898 3:+77880764 None:intergenic
TCTTCATTATTGATTCGTGA+AGG 0.567533 3:+77882843 None:intergenic
TCTTGTGCGCAGCGCTGCTG+AGG 0.567603 3:+77880288 None:intergenic
AGAGTGGACAAGGGTTAGCA+AGG 0.570938 3:-77880347 MsG0380016009.01.T01:CDS
GAATATGTTACTGAATATGA+GGG 0.572839 3:-77880381 MsG0380016009.01.T01:CDS
AAGAAAACGAGCGAAATGGA+AGG 0.579481 3:-77882900 None:intergenic
TAAAATGCGACCCTGCATAC+GGG 0.579986 3:+77880720 None:intergenic
ACAATAGAATTAACACATGA+CGG 0.580826 3:+77880316 None:intergenic
AATTGCGTCTAAACGAGTGA+AGG 0.582630 3:+77882740 None:intergenic
AGAAAACGAGCGAAATGGAA+GGG 0.583932 3:-77882899 None:intergenic
GTGAGCATTGGCTCTGCCTG+AGG 0.592291 3:+77880228 None:intergenic
TCACAGGCCACTGATGTCGT+GGG 0.598113 3:+77880502 None:intergenic
AGTGAATCATAGATCTCTTG+GGG 0.598535 3:+77880417 None:intergenic
GAGGGTTATATCTTGGAGAG+TGG 0.604921 3:-77880363 MsG0380016009.01.T01:CDS
ATTGCGTCTAAACGAGTGAA+GGG 0.614173 3:+77882741 None:intergenic
GCTACCAGTGGTAGACCCAA+TGG 0.614445 3:-77882768 MsG0380016009.01.T01:CDS
GAAAACGAGCGAAATGGAAG+GGG 0.619026 3:-77882898 None:intergenic
GAGTGGACAAGGGTTAGCAA+GGG 0.627060 3:-77880346 MsG0380016009.01.T01:CDS
CAGTGCGCCCACGACATCAG+TGG 0.628456 3:-77880509 MsG0380016009.01.T01:CDS
TAGCTTCGTGAGCAGCAAGT+CGG 0.631405 3:+77880749 None:intergenic
TCAACAATTGCAGCAATGCG+AGG 0.635647 3:-77880820 MsG0380016009.01.T01:CDS
GCGAAAGCGAAACGATGTTG+AGG 0.644421 3:+77882672 None:intergenic
AGAGATCTATGATTCACTGG+TGG 0.652124 3:-77880412 MsG0380016009.01.T01:CDS
GAGATGAAAGGTGCTACCAG+TGG 0.673059 3:-77882780 MsG0380016009.01.T01:CDS
ATATCTTGGAGAGTGGACAA+GGG 0.726324 3:-77880356 MsG0380016009.01.T01:CDS
GTGAATCATAGATCTCTTGG+GGG 0.736312 3:+77880418 None:intergenic
CATTGATCCACAATCCATGG+CGG 0.766885 3:-77882802 MsG0380016009.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTATTTTATTTTTT+TGG - Chr3:77881161-77881180 MsG0380016009.01.T01:intron 0.0%
!! AAAATTCAATTAAGATTACA+AGG - Chr3:77880898-77880917 MsG0380016009.01.T01:intron 15.0%
!! AACAATTGAAAATGAATATT+TGG + Chr3:77881462-77881481 None:intergenic 15.0%
!!! ATTGAATTTTTTTTAGAAAG+AGG + Chr3:77880474-77880493 None:intergenic 15.0%
!! TAAATACAAACCATTTAATC+CGG + Chr3:77881907-77881926 None:intergenic 20.0%
!! TAAGATTACAAGGTATAATT+GGG - Chr3:77880908-77880927 MsG0380016009.01.T01:intron 20.0%
!! TGAAAATTGTTAATAGTGTA+TGG - Chr3:77880721-77880740 MsG0380016009.01.T01:CDS 20.0%
!! TTAAGATTACAAGGTATAAT+TGG - Chr3:77880907-77880926 MsG0380016009.01.T01:intron 20.0%
!! TTAATCCAAATCATTAGTAA+TGG + Chr3:77881893-77881912 None:intergenic 20.0%
!!! AAGCTATATTGTTTTCTTAT+AGG + Chr3:77881120-77881139 None:intergenic 20.0%
!!! AGCTATATTGTTTTCTTATA+GGG + Chr3:77881119-77881138 None:intergenic 20.0%
!!! AGTAGTATAAATGTTTTTTC+AGG - Chr3:77882101-77882120 MsG0380016009.01.T01:intron 20.0%
!!! GTAGTATAAATGTTTTTTCA+GGG - Chr3:77882102-77882121 MsG0380016009.01.T01:intron 20.0%
!!! TACTAATGATTTGGATTAAA+TGG - Chr3:77881894-77881913 MsG0380016009.01.T01:intron 20.0%
!!! TATGCTCTAAAAATATGAAT+AGG + Chr3:77882027-77882046 None:intergenic 20.0%
!!! TTTTAGTAGTTAGTCAAAAT+TGG - Chr3:77880552-77880571 MsG0380016009.01.T01:intron 20.0%
! AATTAGTAAATAGCTGATAG+CGG - Chr3:77880771-77880790 MsG0380016009.01.T01:CDS 25.0%
! AATTATGACATTTCCATAAG+CGG - Chr3:77880660-77880679 MsG0380016009.01.T01:intron 25.0%
! ACAATAGAATTAACACATGA+CGG + Chr3:77882772-77882791 None:intergenic 25.0%
! AGCATTAACAAAGAGAATTA+TGG + Chr3:77880378-77880397 None:intergenic 25.0%
! ATATTACACTCCTTTACTAA+AGG - Chr3:77881653-77881672 MsG0380016009.01.T01:intron 25.0%
! ATCCATTTGATATGGTAAAT+GGG - Chr3:77881499-77881518 MsG0380016009.01.T01:intron 25.0%
! ATTTGATATTTCTTCTGAAC+AGG - Chr3:77881295-77881314 MsG0380016009.01.T01:intron 25.0%
! ATTTGGAAGAAAACGATTTA+AGG + Chr3:77881445-77881464 None:intergenic 25.0%
! GAATATGTTACTGAATATGA+GGG - Chr3:77882704-77882723 MsG0380016009.01.T01:CDS 25.0%
! TACAATAAAACAAGACAATG+AGG + Chr3:77881359-77881378 None:intergenic 25.0%
! TATCCATTTGATATGGTAAA+TGG - Chr3:77881498-77881517 MsG0380016009.01.T01:intron 25.0%
! TCAAACCATTACTAATGATT+TGG - Chr3:77881885-77881904 MsG0380016009.01.T01:intron 25.0%
! TGAATATGTTACTGAATATG+AGG - Chr3:77882703-77882722 MsG0380016009.01.T01:CDS 25.0%
! TTAAACAAACCAAGAAAGAT+GGG + Chr3:77882437-77882456 None:intergenic 25.0%
! TTGAGTTTATATGATGAGAT+AGG - Chr3:77880619-77880638 MsG0380016009.01.T01:intron 25.0%
! TTTAAACAAACCAAGAAAGA+TGG + Chr3:77882438-77882457 None:intergenic 25.0%
! TTTGATATTTCTTCTGAACA+GGG - Chr3:77881296-77881315 MsG0380016009.01.T01:intron 25.0%
!!! AAACACTTCATTTTTGAAAC+AGG - Chr3:77882152-77882171 MsG0380016009.01.T01:intron 25.0%
!!! AACACTTCATTTTTGAAACA+GGG - Chr3:77882153-77882172 MsG0380016009.01.T01:intron 25.0%
AAACATGCCATAATCTTTGA+GGG + Chr3:77880587-77880606 None:intergenic 30.0%
AAATGATAGAATCTCGTTCT+AGG - Chr3:77881752-77881771 MsG0380016009.01.T01:intron 30.0%
AAGCAGTTATCCATTTGATA+TGG - Chr3:77881491-77881510 MsG0380016009.01.T01:intron 30.0%
AGAAAACGATTTAAGGAAAG+AGG + Chr3:77881438-77881457 None:intergenic 30.0%
AGAAATTCATGAAAGATCCA+AGG + Chr3:77881622-77881641 None:intergenic 30.0%
AGATAGCACATCAAATTTGA+AGG + Chr3:77882058-77882077 None:intergenic 30.0%
ATCCCATTTACCATATCAAA+TGG + Chr3:77881504-77881523 None:intergenic 30.0%
CAAATGAAAGAACATGAACT+AGG + Chr3:77881280-77881299 None:intergenic 30.0%
GGTATAATTGGGATAAAATC+TGG - Chr3:77880919-77880938 MsG0380016009.01.T01:intron 30.0%
GTCTTATAAGTTCATTTGAC+TGG + Chr3:77881047-77881066 None:intergenic 30.0%
TAAACAAACCAAGAAAGATG+GGG + Chr3:77882436-77882455 None:intergenic 30.0%
TAAGATCCATATCCAACATT+GGG + Chr3:77882131-77882150 None:intergenic 30.0%
TCAAATTTGATGTGCTATCT+AGG - Chr3:77882058-77882077 MsG0380016009.01.T01:intron 30.0%
TGAATATGAGGGTTATATCT+TGG - Chr3:77882715-77882734 MsG0380016009.01.T01:CDS 30.0%
TTCCTAAAAGATTTGTACGT+AGG - Chr3:77881686-77881705 MsG0380016009.01.T01:intron 30.0%
! TCTTGCATGCAATTTGAAAT+TGG - Chr3:77880513-77880532 MsG0380016009.01.T01:CDS 30.0%
! TTCCTACGTACAAATCTTTT+AGG + Chr3:77881691-77881710 None:intergenic 30.0%
!! ACGTACAAATCTTTTAGGAA+AGG + Chr3:77881686-77881705 None:intergenic 30.0%
!! TCTTCATTATTGATTCGTGA+AGG + Chr3:77880245-77880264 None:intergenic 30.0%
AAAACCAATGGTTAGAGGTA+GGG - Chr3:77881840-77881859 MsG0380016009.01.T01:intron 35.0%
AAGACAATGAGGTCTGTAAT+GGG + Chr3:77881348-77881367 None:intergenic 35.0%
AATAAGCTGAAAACCGCTTA+TGG + Chr3:77880676-77880695 None:intergenic 35.0%
ACACTCCTTTACTAAAGGAA+GGG - Chr3:77881658-77881677 MsG0380016009.01.T01:intron 35.0%
ACATTATCTTCAGTGAGCAT+TGG + Chr3:77882872-77882891 None:intergenic 35.0%
ACCTAAATCACTTGTGAAGA+AGG - Chr3:77882832-77882851 MsG0380016009.01.T01:CDS 35.0%
ACCTTCTTCACAAGTGATTT+AGG + Chr3:77882836-77882855 None:intergenic 35.0%
ACGATTACTTTCCTAAAAGG+TGG - Chr3:77881710-77881729 MsG0380016009.01.T01:intron 35.0%
AGAAACTGACAGTTACCAAA+TGG - Chr3:77881014-77881033 MsG0380016009.01.T01:intron 35.0%
AGTGAATCATAGATCTCTTG+GGG + Chr3:77882671-77882690 None:intergenic 35.0%
ATAAAAGAGGGTCAGTTTCT+TGG + Chr3:77881593-77881612 None:intergenic 35.0%
ATGTAGTGTTTCTTCCTCAT+TGG + Chr3:77881814-77881833 None:intergenic 35.0%
CAAACATGCCATAATCTTTG+AGG + Chr3:77880588-77880607 None:intergenic 35.0%
CAGTGAATCATAGATCTCTT+GGG + Chr3:77882672-77882691 None:intergenic 35.0%
CATTGTGTTTCCGGATTAAA+TGG - Chr3:77881954-77881973 MsG0380016009.01.T01:intron 35.0%
CCAAGGACAACAATAAAAGA+GGG + Chr3:77881605-77881624 None:intergenic 35.0%
CGATTACTTTCCTAAAAGGT+GGG - Chr3:77881711-77881730 MsG0380016009.01.T01:intron 35.0%
CTCAAAGATTATGGCATGTT+TGG - Chr3:77880586-77880605 MsG0380016009.01.T01:intron 35.0%
GAAACTGACAGTTACCAAAT+GGG - Chr3:77881015-77881034 MsG0380016009.01.T01:intron 35.0%
GATAAACCGATACTAAATGC+AGG + Chr3:77881530-77881549 None:intergenic 35.0%
GCTTAATCCCTCAAAGATTA+TGG - Chr3:77880577-77880596 MsG0380016009.01.T01:intron 35.0%
GGAACGATTACTTTCCTAAA+AGG - Chr3:77881707-77881726 MsG0380016009.01.T01:intron 35.0%
GGAATGAATTACCCAAGAAA+CGG + Chr3:77880453-77880472 None:intergenic 35.0%
GTAAGATCCATATCCAACAT+TGG + Chr3:77882132-77882151 None:intergenic 35.0%
GTGATTTGACAAATCACTGA+TGG + Chr3:77882414-77882433 None:intergenic 35.0%
GTTAAATCCCTCAAAGATCA+TGG + Chr3:77881250-77881269 None:intergenic 35.0%
TAAAAGAGGGTCAGTTTCTT+GGG + Chr3:77881592-77881611 None:intergenic 35.0%
TACACTCCTTTACTAAAGGA+AGG - Chr3:77881657-77881676 MsG0380016009.01.T01:intron 35.0%
TCCAAGGACAACAATAAAAG+AGG + Chr3:77881606-77881625 None:intergenic 35.0%
TGAAAGAACATGAACTAGGT+AGG + Chr3:77881276-77881295 None:intergenic 35.0%
TTGACTGGAAAAAACCCATT+TGG + Chr3:77881032-77881051 None:intergenic 35.0%
! ACATTGTGTCATTGTGTTTC+CGG - Chr3:77881945-77881964 MsG0380016009.01.T01:intron 35.0%
! GTTTTCTTATAGGGTCTGTT+TGG + Chr3:77881110-77881129 None:intergenic 35.0%
!! CATTATTGATTCGTGAAGGT+TGG + Chr3:77880241-77880260 None:intergenic 35.0%
AAACACGACCATGATCTTTG+AGG - Chr3:77881239-77881258 MsG0380016009.01.T01:intron 40.0%
AAACCAATGGTTAGAGGTAG+GGG - Chr3:77881841-77881860 MsG0380016009.01.T01:intron 40.0%
AACACGACCATGATCTTTGA+GGG - Chr3:77881240-77881259 MsG0380016009.01.T01:intron 40.0%
AATTGCGTCTAAACGAGTGA+AGG + Chr3:77880348-77880367 None:intergenic 40.0%
AGAGATCTATGATTCACTGG+TGG - Chr3:77882673-77882692 MsG0380016009.01.T01:CDS 40.0%
AGGAAGAAACACTACATGCA+GGG - Chr3:77881817-77881836 MsG0380016009.01.T01:intron 40.0%
ATATCTTGGAGAGTGGACAA+GGG - Chr3:77882729-77882748 MsG0380016009.01.T01:CDS 40.0%
ATGTATCTTCATGACAAGCC+TGG - Chr3:77882632-77882651 MsG0380016009.01.T01:intron 40.0%
ATTGCGTCTAAACGAGTGAA+GGG + Chr3:77880347-77880366 None:intergenic 40.0%
CAAGACAATGAGGTCTGTAA+TGG + Chr3:77881349-77881368 None:intergenic 40.0%
CAAGTCGGAACAAAGTAGTA+AGG + Chr3:77882324-77882343 None:intergenic 40.0%
CATCAAAAGTGAAGAGCTTC+TGG + Chr3:77882610-77882629 None:intergenic 40.0%
CCAAGAGATCTATGATTCAC+TGG - Chr3:77882670-77882689 MsG0380016009.01.T01:CDS 40.0%
CCAGTGAATCATAGATCTCT+TGG + Chr3:77882673-77882692 None:intergenic 40.0%
GAAAACCAATGGTTAGAGGT+AGG - Chr3:77881839-77881858 MsG0380016009.01.T01:intron 40.0%
GAAACGATGTTGAGGATTGA+TGG + Chr3:77880408-77880427 None:intergenic 40.0%
GATCTGCCTGCATTTAGTAT+CGG - Chr3:77881521-77881540 MsG0380016009.01.T01:intron 40.0%
GTGAATCATAGATCTCTTGG+GGG + Chr3:77882670-77882689 None:intergenic 40.0%
TACTTTCCTAAAAGGTGGGA+TGG - Chr3:77881715-77881734 MsG0380016009.01.T01:intron 40.0%
TATATCTTGGAGAGTGGACA+AGG - Chr3:77882728-77882747 MsG0380016009.01.T01:CDS 40.0%
TCAAATCACCCCATCTTTCT+TGG - Chr3:77882425-77882444 MsG0380016009.01.T01:intron 40.0%
TCTCTCTGATTCCGTTTCTT+GGG - Chr3:77880439-77880458 MsG0380016009.01.T01:CDS 40.0%
TTAAAATGCGACCCTGCATA+CGG + Chr3:77882369-77882388 None:intergenic 40.0%
TTGATGTGCTATCTAGGCAT+CGG - Chr3:77882064-77882083 MsG0380016009.01.T01:intron 40.0%
! ATAATGCCATCCCACCTTTT+AGG + Chr3:77881724-77881743 None:intergenic 40.0%
! CCCTCTTTTATTGTTGTCCT+TGG - Chr3:77881602-77881621 MsG0380016009.01.T01:intron 40.0%
! CTAGGTGATTTGGATATGTG+CGG - Chr3:77881770-77881789 MsG0380016009.01.T01:intron 40.0%
! GAATCTCGTTCTAGGTGATT+TGG - Chr3:77881760-77881779 MsG0380016009.01.T01:intron 40.0%
!! ATTTTAAGAGTGGTGAGTGG+TGG - Chr3:77882382-77882401 MsG0380016009.01.T01:intron 40.0%
!! GTTTTGTTGAGTCACCAATG+AGG - Chr3:77881797-77881816 MsG0380016009.01.T01:intron 40.0%
!! TTTTCAGGGTTTCCCAATGT+TGG - Chr3:77882116-77882135 MsG0380016009.01.T01:intron 40.0%
AACCAATGGTTAGAGGTAGG+GGG - Chr3:77881842-77881861 MsG0380016009.01.T01:intron 45.0%
AAGGTGGGATGGCATTATTG+TGG - Chr3:77881726-77881745 MsG0380016009.01.T01:intron 45.0%
ACTTGTGAAGAAGGTTCCTC+AGG - Chr3:77882841-77882860 MsG0380016009.01.T01:CDS 45.0%
AGCTAAGAAATCCCGTATGC+AGG - Chr3:77882354-77882373 MsG0380016009.01.T01:intron 45.0%
AGGCACCCTTCCTTTAGTAA+AGG + Chr3:77881666-77881685 None:intergenic 45.0%
CAGGGAAAACCAATGGTTAG+AGG - Chr3:77881835-77881854 MsG0380016009.01.T01:intron 45.0%
CATTGATCCACAATCCATGG+CGG - Chr3:77880283-77880302 MsG0380016009.01.T01:CDS 45.0%
CGACATTGATCCACAATCCA+TGG - Chr3:77880280-77880299 MsG0380016009.01.T01:CDS 45.0%
CGGAACAAAGTAGTAAGGTC+TGG + Chr3:77882319-77882338 None:intergenic 45.0%
CTACATGCAGGGAAAACCAA+TGG - Chr3:77881828-77881847 MsG0380016009.01.T01:intron 45.0%
CTCTCTCTGATTCCGTTTCT+TGG - Chr3:77880438-77880457 MsG0380016009.01.T01:CDS 45.0%
GAGGAAGAAACACTACATGC+AGG - Chr3:77881816-77881835 MsG0380016009.01.T01:intron 45.0%
GAGGGTTATATCTTGGAGAG+TGG - Chr3:77882722-77882741 MsG0380016009.01.T01:CDS 45.0%
GCTAAGAAATCCCGTATGCA+GGG - Chr3:77882355-77882374 MsG0380016009.01.T01:intron 45.0%
GGGTTTCCCAATGTTGGATA+TGG - Chr3:77882122-77882141 MsG0380016009.01.T01:intron 45.0%
TAAAATGCGACCCTGCATAC+GGG + Chr3:77882368-77882387 None:intergenic 45.0%
TCAACAATTGCAGCAATGCG+AGG - Chr3:77882265-77882284 MsG0380016009.01.T01:intron 45.0%
!! CGCATTTTAAGAGTGGTGAG+TGG - Chr3:77882379-77882398 MsG0380016009.01.T01:intron 45.0%
ACGAGTGAAGGGTCTTCCAT+TGG + Chr3:77880336-77880355 None:intergenic 50.0%
ATCTCTTGGGGGCAATTGTC+AGG + Chr3:77882659-77882678 None:intergenic 50.0%
CGAGTGAAGGGTCTTCCATT+GGG + Chr3:77880335-77880354 None:intergenic 50.0%
CTTCTGAACAGGGCTTGCAT+TGG - Chr3:77881306-77881325 MsG0380016009.01.T01:intron 50.0%
GCGAAAGCGAAACGATGTTG+AGG + Chr3:77880416-77880435 None:intergenic 50.0%
TAGCTTCGTGAGCAGCAAGT+CGG + Chr3:77882339-77882358 None:intergenic 50.0%
TCTTCCATTGGGTCTACCAC+TGG + Chr3:77880324-77880343 None:intergenic 50.0%
TGCAGCAATGCGAGGACTTT+CGG - Chr3:77882273-77882292 MsG0380016009.01.T01:intron 50.0%
TTAAGAGTGGTGAGTGGTGG+TGG - Chr3:77882385-77882404 MsG0380016009.01.T01:intron 50.0%
! AGAGTGGACAAGGGTTAGCA+AGG - Chr3:77882738-77882757 MsG0380016009.01.T01:CDS 50.0%
! CAATCCATGGCGGAGATGAA+AGG - Chr3:77880293-77880312 MsG0380016009.01.T01:CDS 50.0%
! GAGTGGACAAGGGTTAGCAA+GGG - Chr3:77882739-77882758 MsG0380016009.01.T01:CDS 50.0%
! TTCATCTCCGCCATGGATTG+TGG + Chr3:77880293-77880312 None:intergenic 50.0%
!! GAGATGAAAGGTGCTACCAG+TGG - Chr3:77880305-77880324 MsG0380016009.01.T01:CDS 50.0%
!! GCAGGGTCGCATTTTAAGAG+TGG - Chr3:77882372-77882391 MsG0380016009.01.T01:intron 50.0%
!! GTGAAGAGCTTCTGGTTCAC+AGG + Chr3:77882602-77882621 None:intergenic 50.0%
AGCACCTTTCATCTCCGCCA+TGG + Chr3:77880300-77880319 None:intergenic 55.0%
CTCCCCCTACCTCTAACCAT+TGG + Chr3:77881847-77881866 None:intergenic 55.0%
GCTACCAGTGGTAGACCCAA+TGG - Chr3:77880317-77880336 MsG0380016009.01.T01:CDS 55.0%
TCACAGGCCACTGATGTCGT+GGG + Chr3:77882586-77882605 None:intergenic 55.0%
TTCACAGGCCACTGATGTCG+TGG + Chr3:77882587-77882606 None:intergenic 55.0%
TGGGGGCAATTGTCAGGTCC+AGG + Chr3:77882653-77882672 None:intergenic 60.0%
!! GTGAGCATTGGCTCTGCCTG+AGG + Chr3:77882860-77882879 None:intergenic 60.0%
CAGTGCGCCCACGACATCAG+TGG - Chr3:77882576-77882595 MsG0380016009.01.T01:intron 65.0%
TCTTGTGCGCAGCGCTGCTG+AGG + Chr3:77882800-77882819 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 77880200 77882907 77880200 ID=MsG0380016009.01;Name=MsG0380016009.01
Chr3 mRNA 77880200 77882907 77880200 ID=MsG0380016009.01.T01;Parent=MsG0380016009.01;Name=MsG0380016009.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0.5|0.66|3|0|257
Chr3 exon 77882647 77882907 77882647 ID=MsG0380016009.01.T01:exon:18253;Parent=MsG0380016009.01.T01
Chr3 exon 77880714 77880872 77880714 ID=MsG0380016009.01.T01:exon:18252;Parent=MsG0380016009.01.T01
Chr3 exon 77880200 77880553 77880200 ID=MsG0380016009.01.T01:exon:18251;Parent=MsG0380016009.01.T01
Chr3 CDS 77882647 77882907 77882647 ID=MsG0380016009.01.T01:cds;Parent=MsG0380016009.01.T01
Chr3 CDS 77880714 77880872 77880714 ID=MsG0380016009.01.T01:cds;Parent=MsG0380016009.01.T01
Chr3 CDS 77880200 77880553 77880200 ID=MsG0380016009.01.T01:cds;Parent=MsG0380016009.01.T01
Gene Sequence

>MsG0380016009.01.T01

ATGGAAGGGGTTGAAGGAGAAAGAAGCAGCTTCAAACTCCAACCTTCACGAATCAATAATGAAGACATACTCTTCTGCATCGACATTGATCCACAATCCATGGCGGAGATGAAAGGTGCTACCAGTGGTAGACCCAATGGAAGACCCTTCACTCGTTTAGACGCAATTAAACAAGCCATAATTCTCTTTGTTAATGCTAAACTCACCATCAATCCTCAACATCGTTTCGCTTTCGCTACTCTCTCTGATTCCGTTTCTTGGCTGAAGAAAGAGTTTAGCAGTGAAGCTGAGTCAACAATTGCAGCAATGCGAGGACTTTCGGCTACTACATCTAGCAGTCAACCAGACCTTACTACTTTGTTCCGACTTGCTGCTCACGAAGCTAAGAAATCCCGTATGCAGGGTCGCATTTTAAGAGTGATTTTATTCTACTGCAGATCAACAGTGCGCCCACGACATCAGTGGCCTGTGAACCAGAAGCTCTTCACTTTTGATGTCATGTATCTTCATGACAAGCCTGGACCTGACAATTGCCCCCAAGAGATCTATGATTCACTGGTGGAAGCTCTTGAATATGTTACTGAATATGAGGGTTATATCTTGGAGAGTGGACAAGGGTTAGCAAGGGTTCTTTTCCGTCATGTGTTAATTCTATTGTGTCATCCTCAGCAGCGCTGCGCACAAGATTATATTGACATACCTAAATCACTTGTGAAGAAGGTTCCTCAGGCAGAGCCAATGCTCACTGAAGATAATGTTCCATCCAGCCAGTGA
Protein sequence

>MsG0380016009.01.T01

MEGVEGERSSFKLQPSRINNEDILFCIDIDPQSMAEMKGATSGRPNGRPFTRLDAIKQAIILFVNAKLTINPQHRFAFATLSDSVSWLKKEFSSEAESTIAAMRGLSATTSSSQPDLTTLFRLAAHEAKKSRMQGRILRVILFYCRSTVRPRHQWPVNQKLFTFDVMYLHDKPGPDNCPQEIYDSLVEALEYVTEYEGYILESGQGLARVLFRHVLILLCHPQQRCAQDYIDIPKSLVKKVPQAEPMLTEDNVPSSQ*