Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021896.01.T01 | XP_024636984.1 | 77.66 | 94 | 16 | 1 | 26 | 119 | 2 | 90 | 2.27E-40 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047790.01 | MsG0480021896.01 | 0.816207 | 6.227235e-52 | 4.384945e-49 |
| MsG0080048058.01 | MsG0480021896.01 | -0.804444 | 2.153827e-49 | 1.110659e-46 |
| MsG0080048185.01 | MsG0480021896.01 | 0.855314 | 6.857609e-62 | 1.576801e-58 |
| MsG0080048532.01 | MsG0480021896.01 | 0.820571 | 6.391885e-53 | 5.076087e-50 |
| MsG0080048809.01 | MsG0480021896.01 | 0.816317 | 5.885651e-52 | 4.156899e-49 |
| MsG0080048928.01 | MsG0480021896.01 | -0.815153 | 1.069488e-51 | 7.315891e-49 |
| MsG0180000400.01 | MsG0480021896.01 | 0.825231 | 5.245784e-54 | 4.753545e-51 |
| MsG0180000821.01 | MsG0480021896.01 | -0.829010 | 6.538431e-55 | 6.607738e-52 |
| MsG0180002750.01 | MsG0480021896.01 | 0.808580 | 2.888041e-50 | 1.657402e-47 |
| MsG0180002796.01 | MsG0480021896.01 | -0.804759 | 1.851478e-49 | 9.626120e-47 |
| MsG0180002952.01 | MsG0480021896.01 | -0.801316 | 9.538833e-49 | 4.541388e-46 |
| MsG0180002977.01 | MsG0480021896.01 | 0.817449 | 3.278365e-52 | 2.388301e-49 |
| MsG0180004272.01 | MsG0480021896.01 | -0.801301 | 9.605790e-49 | 4.571626e-46 |
| MsG0180005445.01 | MsG0480021896.01 | -0.804643 | 1.957542e-49 | 1.014659e-46 |
| MsG0180005493.01 | MsG0480021896.01 | -0.820512 | 6.595059e-53 | 5.228855e-50 |
| MsG0280011293.01 | MsG0480021896.01 | -0.806152 | 9.450435e-50 | 5.092208e-47 |
| MsG0280011334.01 | MsG0480021896.01 | -0.805312 | 1.418467e-49 | 7.480229e-47 |
| MsG0380011729.01 | MsG0480021896.01 | -0.807084 | 6.007714e-50 | 3.315425e-47 |
| MsG0380014551.01 | MsG0480021896.01 | 0.809930 | 1.483005e-50 | 8.821286e-48 |
| MsG0380014576.01 | MsG0480021896.01 | -0.817993 | 2.471195e-52 | 1.827276e-49 |
| MsG0480019984.01 | MsG0480021896.01 | 0.819709 | 1.007391e-52 | 7.810971e-50 |
| MsG0480020331.01 | MsG0480021896.01 | -0.803797 | 2.936966e-49 | 1.489569e-46 |
| MsG0480020843.01 | MsG0480021896.01 | -0.800142 | 1.655816e-48 | 7.652167e-46 |
| MsG0480021896.01 | MsG0480021900.01 | -0.812490 | 4.130999e-51 | 2.630237e-48 |
| MsG0480021896.01 | MsG0480022094.01 | -0.809701 | 1.661628e-50 | 9.824435e-48 |
| MsG0480021896.01 | MsG0480022115.01 | -0.829033 | 6.454347e-55 | 6.527148e-52 |
| MsG0480021896.01 | MsG0480022228.01 | -0.815238 | 1.024306e-51 | 7.022883e-49 |
| MsG0480021896.01 | MsG0480022392.01 | 0.813535 | 2.437059e-51 | 1.595747e-48 |
| MsG0480021896.01 | MsG0480022615.01 | 0.829153 | 6.035039e-55 | 6.125289e-52 |
| MsG0480021896.01 | MsG0480023936.01 | 0.812866 | 3.417099e-51 | 2.197127e-48 |
| MsG0480021896.01 | MsG0580024157.01 | -0.815420 | 9.328811e-52 | 6.428549e-49 |
| MsG0480021896.01 | MsG0580024288.01 | 0.822277 | 2.582057e-53 | 2.151284e-50 |
| MsG0480021896.01 | MsG0580024438.01 | 0.815492 | 8.991925e-52 | 6.209043e-49 |
| MsG0480021896.01 | MsG0580024928.01 | 0.824876 | 6.363519e-54 | 5.708582e-51 |
| MsG0480021896.01 | MsG0580024960.01 | -0.813158 | 2.948461e-51 | 1.910720e-48 |
| MsG0480021896.01 | MsG0580025900.01 | -0.801088 | 1.062029e-48 | 5.027539e-46 |
| MsG0480021896.01 | MsG0580026595.01 | -0.813872 | 2.054554e-51 | 1.357581e-48 |
| MsG0480021896.01 | MsG0580027261.01 | -0.812503 | 4.102296e-51 | 2.612845e-48 |
| MsG0480021896.01 | MsG0580027441.01 | -0.803408 | 3.535447e-49 | 1.775269e-46 |
| MsG0480021896.01 | MsG0580027628.01 | -0.811892 | 5.577010e-51 | 3.493757e-48 |
| MsG0480021896.01 | MsG0580028613.01 | 0.835837 | 1.329573e-56 | 1.645441e-53 |
| MsG0480021896.01 | MsG0580028664.01 | 0.814374 | 1.591903e-51 | 1.066301e-48 |
| MsG0480021896.01 | MsG0580029592.01 | -0.802994 | 4.306981e-49 | 2.139753e-46 |
| MsG0480021896.01 | MsG0680030447.01 | -0.811451 | 6.954920e-51 | 4.306673e-48 |
| MsG0480021896.01 | MsG0680030667.01 | -0.808768 | 2.633195e-50 | 1.518563e-47 |
| MsG0480021896.01 | MsG0680031446.01 | 0.812370 | 4.387286e-51 | 2.784417e-48 |
| MsG0480021896.01 | MsG0680031805.01 | 0.854792 | 9.719773e-62 | 2.196586e-58 |
| MsG0480021896.01 | MsG0680031975.01 | -0.806573 | 7.704276e-50 | 4.196082e-47 |
| MsG0480021896.01 | MsG0680034757.01 | -0.801102 | 1.055124e-48 | 4.996616e-46 |
| MsG0480021896.01 | MsG0680035773.01 | -0.816616 | 5.046241e-52 | 3.593066e-49 |
| MsG0480021896.01 | MsG0780036630.01 | -0.837800 | 4.196058e-57 | 5.512188e-54 |
| MsG0480021896.01 | MsG0780036633.01 | -0.804363 | 2.238916e-49 | 1.152187e-46 |
| MsG0480021896.01 | MsG0780036635.01 | -0.802234 | 6.179263e-49 | 3.011240e-46 |
| MsG0480021896.01 | MsG0780038644.01 | -0.806604 | 7.588201e-50 | 4.136100e-47 |
| MsG0480021896.01 | MsG0780038910.01 | 0.812959 | 3.260139e-51 | 2.101405e-48 |
| MsG0480021896.01 | MsG0780039570.01 | -0.804741 | 1.867241e-49 | 9.703869e-47 |
| MsG0480021896.01 | MsG0780039717.01 | -0.821786 | 3.355719e-53 | 2.757007e-50 |
| MsG0480021896.01 | MsG0780039777.01 | -0.814537 | 1.464487e-51 | 9.853177e-49 |
| MsG0480021896.01 | MsG0780039867.01 | 0.804278 | 2.332642e-49 | 1.197758e-46 |
| MsG0480021896.01 | MsG0780040254.01 | -0.800460 | 1.426565e-48 | 6.645979e-46 |
| MsG0480021896.01 | MsG0780040576.01 | 0.834874 | 2.328741e-56 | 2.799807e-53 |
| MsG0480021896.01 | MsG0780041432.01 | -0.819280 | 1.261724e-52 | 9.666258e-50 |
| MsG0480021896.01 | MsG0780041671.01 | -0.837118 | 6.275778e-57 | 8.071997e-54 |
| MsG0480021896.01 | MsG0780041734.01 | 0.806332 | 8.659962e-50 | 4.687702e-47 |
| MsG0480021896.01 | MsG0880042553.01 | 0.809646 | 1.707494e-50 | 1.008123e-47 |
| MsG0480021896.01 | MsG0880043252.01 | -0.809375 | 1.951922e-50 | 1.144157e-47 |
| MsG0480021896.01 | MsG0880044062.01 | 0.819003 | 1.458582e-52 | 1.109098e-49 |
| MsG0480021896.01 | MsG0880044389.01 | 0.867265 | 1.554976e-65 | 5.394934e-62 |
| MsG0480021896.01 | MsG0880045433.01 | 0.802899 | 4.507154e-49 | 2.233935e-46 |
| MsG0480021896.01 | MsG0880045583.01 | -0.827644 | 1.396395e-54 | 1.356043e-51 |
| MsG0480021896.01 | MsG0880045897.01 | 0.879350 | 1.338485e-69 | 7.232585e-66 |
| MsG0480021896.01 | MsG0880046027.01 | -0.814945 | 1.189327e-51 | 8.089974e-49 |
| MsG0480021896.01 | MsG0880046560.01 | -0.825177 | 5.402739e-54 | 4.888448e-51 |
| MsG0480021896.01 | MsG0880046561.01 | -0.836298 | 1.015545e-56 | 1.274651e-53 |
| MsG0480021896.01 | MsG0880047285.01 | 0.812769 | 3.588350e-51 | 2.301429e-48 |
| MsG0480021896.01 | MsG0880047689.01 | 0.815680 | 8.167030e-52 | 5.668396e-49 |
| MsG0380015702.01 | MsG0480021896.01 | -0.803831 | 2.889591e-49 | 1.466835e-46 |
| MsG0380016009.01 | MsG0480021896.01 | 0.801501 | 8.741197e-49 | 4.181171e-46 |
| MsG0380016227.01 | MsG0480021896.01 | -0.805139 | 1.541708e-49 | 8.094229e-47 |
| MsG0380016342.01 | MsG0480021896.01 | 0.804851 | 1.771388e-49 | 9.231733e-47 |
| MsG0380016483.01 | MsG0480021896.01 | -0.800850 | 1.187743e-48 | 5.588728e-46 |
| MsG0380017055.01 | MsG0480021896.01 | -0.809245 | 2.081238e-50 | 1.215728e-47 |
| MsG0380017265.01 | MsG0480021896.01 | 0.823332 | 1.466248e-53 | 1.258655e-50 |
| MsG0380017266.01 | MsG0480021896.01 | 0.825084 | 5.683784e-54 | 5.129012e-51 |
| MsG0380017335.01 | MsG0480021896.01 | -0.810439 | 1.152002e-50 | 6.943983e-48 |
| MsG0380017551.01 | MsG0480021896.01 | 0.806360 | 8.544294e-50 | 4.628215e-47 |
| MsG0280007484.01 | MsG0480021896.01 | -0.837109 | 6.308431e-57 | 8.112170e-54 |
| MsG0280007551.01 | MsG0480021896.01 | -0.801684 | 8.017659e-49 | 3.852666e-46 |
| MsG0280007764.01 | MsG0480021896.01 | -0.811947 | 5.426159e-51 | 3.404458e-48 |
| MsG0280007984.01 | MsG0480021896.01 | -0.830587 | 2.700783e-55 | 2.857745e-52 |
| MsG0280008614.01 | MsG0480021896.01 | -0.803474 | 3.426048e-49 | 1.723264e-46 |
| MsG0280008615.01 | MsG0480021896.01 | -0.819686 | 1.019437e-52 | 7.899285e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021896.01.T01 | MTR_4g078485 | 82.143 | 84 | 15 | 0 | 23 | 106 | 49 | 132 | 7.17e-41 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021896.01.T01 | AT1G65032 | 63.014 | 73 | 27 | 0 | 37 | 109 | 12 | 84 | 7.58e-27 | 95.9 |
Find 30 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATTTCAAATTCTAATT+AGG | 0.130089 | 4:+65754117 | None:intergenic |
| CCTAATTAGAATTTGAAATT+AGG | 0.182424 | 4:-65754117 | MsG0480021896.01.T01:three_prime_UTR |
| AAAGCATACGGTATTCAAAA+TGG | 0.318000 | 4:-65754234 | MsG0480021896.01.T01:three_prime_UTR |
| CTGAGGTACGTGCAATGTTT+TGG | 0.338129 | 4:-65754450 | MsG0480021896.01.T01:CDS |
| AGTATTCAGCAGTATCAATT+AGG | 0.338566 | 4:+65754389 | None:intergenic |
| GAATGGGAAAGGGTTTGATA+TGG | 0.351995 | 4:-65754593 | MsG0480021896.01.T01:CDS |
| ATAAATGAAAGTTTAACTTA+AGG | 0.371812 | 4:-65754068 | MsG0480021896.01.T01:three_prime_UTR |
| CTCATTATAAGCATACAATA+AGG | 0.424983 | 4:+65754147 | None:intergenic |
| ACTAATTGCGACGAGGGAAA+TGG | 0.425687 | 4:+65754307 | None:intergenic |
| AACATACTCTACATTGGATT+CGG | 0.431126 | 4:+65754183 | None:intergenic |
| GCAGAGGATCTGCATGGAAT+AGG | 0.436458 | 4:-65754564 | MsG0480021896.01.T01:CDS |
| ACTGACATTCGCTGCAAGAC+TGG | 0.449305 | 4:-65754482 | MsG0480021896.01.T01:CDS |
| GGAAATGGAAGGTGTTGATC+AGG | 0.482869 | 4:+65754322 | None:intergenic |
| GGTGTGTTGCAGAATGGGAA+AGG | 0.507863 | 4:-65754604 | MsG0480021896.01.T01:intron |
| AAGCTTAACATACTCTACAT+TGG | 0.508834 | 4:+65754177 | None:intergenic |
| AATGGGAAAGGGTTTGATAT+GGG | 0.518936 | 4:-65754592 | MsG0480021896.01.T01:CDS |
| TTTGATATGGGCGACGGCAG+AGG | 0.527398 | 4:-65754580 | MsG0480021896.01.T01:CDS |
| GTGTGTTGCAGAATGGGAAA+GGG | 0.536633 | 4:-65754603 | MsG0480021896.01.T01:intron |
| GTTCATACTAATTGCGACGA+GGG | 0.586529 | 4:+65754301 | None:intergenic |
| GCGAATGTCAGTGGCAACGA+AGG | 0.598642 | 4:+65754493 | None:intergenic |
| TTTGGGTGGGTTCTGATGAA+CGG | 0.599950 | 4:-65754432 | MsG0480021896.01.T01:CDS |
| CTACATTGGATTCGGCTCGT+AGG | 0.624831 | 4:+65754191 | None:intergenic |
| AAAGGGTTTGATATGGGCGA+CGG | 0.633143 | 4:-65754586 | MsG0480021896.01.T01:CDS |
| AGTCTTGCAGCGAATGTCAG+TGG | 0.636620 | 4:+65754484 | None:intergenic |
| GCGACGGCAGAGGATCTGCA+TGG | 0.669341 | 4:-65754570 | MsG0480021896.01.T01:CDS |
| AAGACTGGCGAAGAAAGCTG+AGG | 0.702682 | 4:-65754467 | MsG0480021896.01.T01:CDS |
| GATCAGGTAATGTGACGAGG+AGG | 0.706235 | 4:+65754338 | None:intergenic |
| AGTTCATACTAATTGCGACG+AGG | 0.712101 | 4:+65754300 | None:intergenic |
| GTTGATCAGGTAATGTGACG+AGG | 0.712528 | 4:+65754335 | None:intergenic |
| ATTGCGACGAGGGAAATGGA+AGG | 0.712593 | 4:+65754311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAACAAAAATATAAATAA+AGG | - | Chr4:65754565-65754584 | MsG0480021896.01.T01:CDS | 10.0% |
| !!! | TATTTTTATTGTTTTTTACA+TGG | + | Chr4:65754623-65754642 | None:intergenic | 10.0% |
| !! | AAATTTCATAGAAAATAAAC+TGG | + | Chr4:65754878-65754897 | None:intergenic | 15.0% |
| !! | CACTTTAATTGTATTAAAAA+TGG | - | Chr4:65754073-65754092 | MsG0480021896.01.T01:three_prime_UTR | 15.0% |
| !! | GTAAAATCAAATTCTTAATT+GGG | - | Chr4:65754143-65754162 | MsG0480021896.01.T01:three_prime_UTR | 15.0% |
| !! | TAAAATCAAATTCTTAATTG+GGG | - | Chr4:65754144-65754163 | MsG0480021896.01.T01:three_prime_UTR | 15.0% |
| !! | TGTAAAATCAAATTCTTAAT+TGG | - | Chr4:65754142-65754161 | MsG0480021896.01.T01:three_prime_UTR | 15.0% |
| !! | TTATTAGCAAAGAAAAAATA+AGG | - | Chr4:65754326-65754345 | MsG0480021896.01.T01:CDS | 15.0% |
| !!! | ACAATAGATCAATAAAATTT+TGG | + | Chr4:65754664-65754683 | None:intergenic | 15.0% |
| !!! | AGTTTATTTTCTATGAAATT+TGG | - | Chr4:65754877-65754896 | MsG0480021896.01.T01:intron | 15.0% |
| !!! | ATAAAATTTTGGGATAAAAA+TGG | + | Chr4:65754653-65754672 | None:intergenic | 15.0% |
| !!! | ATAAATGAAAGTTTAACTTA+AGG | - | Chr4:65755553-65755572 | MsG0480021896.01.T01:CDS | 15.0% |
| !!! | CAATAGATCAATAAAATTTT+GGG | + | Chr4:65754663-65754682 | None:intergenic | 15.0% |
| !!! | CATTTTTAATACAATTAAAG+TGG | + | Chr4:65754075-65754094 | None:intergenic | 15.0% |
| !!! | TTTTATGTTTGTAATTGTTT+GGG | + | Chr4:65754536-65754555 | None:intergenic | 15.0% |
| !!! | TTTTTATGTTTGTAATTGTT+TGG | + | Chr4:65754537-65754556 | None:intergenic | 15.0% |
| !! | ATCAATTGTGTAATTTAACT+TGG | - | Chr4:65754223-65754242 | MsG0480021896.01.T01:three_prime_UTR | 20.0% |
| !! | ATTCTCCAATAAAAATTTCA+CGG | - | Chr4:65754464-65754483 | MsG0480021896.01.T01:CDS | 20.0% |
| !! | ATTTCTGTTTAAACTAAGTT+TGG | - | Chr4:65754996-65755015 | MsG0480021896.01.T01:intron | 20.0% |
| !! | CCTAATTTCAAATTCTAATT+AGG | + | Chr4:65755507-65755526 | None:intergenic | 20.0% |
| !! | GAAAGATACAATTTACTATT+TGG | - | Chr4:65754404-65754423 | MsG0480021896.01.T01:CDS | 20.0% |
| !!! | CCTAATTAGAATTTGAAATT+AGG | - | Chr4:65755504-65755523 | MsG0480021896.01.T01:intron | 20.0% |
| !!! | TATATGTAAGAAAAAGCATA+CGG | - | Chr4:65755375-65755394 | MsG0480021896.01.T01:intron | 20.0% |
| !!! | TCAATTGTGTAATTTAACTT+GGG | - | Chr4:65754224-65754243 | MsG0480021896.01.T01:three_prime_UTR | 20.0% |
| !!! | TGCAAATCATGATATTTTTT+TGG | - | Chr4:65755347-65755366 | MsG0480021896.01.T01:intron | 20.0% |
| ! | AATGCATACATCAAGTTAAT+AGG | + | Chr4:65754972-65754991 | None:intergenic | 25.0% |
| ! | ATATTAGGTCAAACATAATG+GGG | - | Chr4:65754252-65754271 | MsG0480021896.01.T01:three_prime_UTR | 25.0% |
| ! | CATATTAGGTCAAACATAAT+GGG | - | Chr4:65754251-65754270 | MsG0480021896.01.T01:three_prime_UTR | 25.0% |
| ! | CTCATTATAAGCATACAATA+AGG | + | Chr4:65755477-65755496 | None:intergenic | 25.0% |
| ! | GCTTAAATGCATTTCTTATT+AGG | - | Chr4:65754914-65754933 | MsG0480021896.01.T01:intron | 25.0% |
| ! | GTTACAAATATACCATTTGA+AGG | - | Chr4:65754596-65754615 | MsG0480021896.01.T01:intron | 25.0% |
| ! | TCATATTAGGTCAAACATAA+TGG | - | Chr4:65754250-65754269 | MsG0480021896.01.T01:three_prime_UTR | 25.0% |
| !! | TTAACTTGGGAATTCATATT+AGG | - | Chr4:65754237-65754256 | MsG0480021896.01.T01:three_prime_UTR | 25.0% |
| AAAGCATACGGTATTCAAAA+TGG | - | Chr4:65755387-65755406 | MsG0480021896.01.T01:intron | 30.0% | |
| AACATACTCTACATTGGATT+CGG | + | Chr4:65755441-65755460 | None:intergenic | 30.0% | |
| AAGAAATCCCTAATTCTTCT+CGG | - | Chr4:65754691-65754710 | MsG0480021896.01.T01:intron | 30.0% | |
| AAGCTTAACATACTCTACAT+TGG | + | Chr4:65755447-65755466 | None:intergenic | 30.0% | |
| ACTTGAACAAGAGCAAAAAT+AGG | - | Chr4:65754108-65754127 | MsG0480021896.01.T01:three_prime_UTR | 30.0% | |
| AGTATTCAGCAGTATCAATT+AGG | + | Chr4:65755235-65755254 | None:intergenic | 30.0% | |
| ATCAGCAATGAAATTGTCAT+GGG | - | Chr4:65754436-65754455 | MsG0480021896.01.T01:CDS | 30.0% | |
| CAATAAAAATTTCACGGAAG+AGG | - | Chr4:65754470-65754489 | MsG0480021896.01.T01:CDS | 30.0% | |
| CTTGAACAAGAGCAAAAATA+GGG | - | Chr4:65754109-65754128 | MsG0480021896.01.T01:three_prime_UTR | 30.0% | |
| TCATAGAAAATAAACTGGAC+AGG | + | Chr4:65754873-65754892 | None:intergenic | 30.0% | |
| ! | CTCTTCCGTGAAATTTTTAT+TGG | + | Chr4:65754472-65754491 | None:intergenic | 30.0% |
| ! | CTGTTTTGTGAGAAAGAAAA+CGG | + | Chr4:65754734-65754753 | None:intergenic | 30.0% |
| ! | TCTCTATCTTTTCTCAAGAA+AGG | - | Chr4:65755254-65755273 | MsG0480021896.01.T01:intron | 30.0% |
| ! | TTTTTACATGGTCCTTCAAA+TGG | + | Chr4:65754611-65754630 | None:intergenic | 30.0% |
| !! | TTTTCTATGAAATTTGGAGC+TGG | - | Chr4:65754883-65754902 | MsG0480021896.01.T01:intron | 30.0% |
| AATGGGAAAGGGTTTGATAT+GGG | - | Chr4:65755029-65755048 | MsG0480021896.01.T01:intron | 35.0% | |
| CAATTTCATTGCTGATGTGA+CGG | + | Chr4:65754432-65754451 | None:intergenic | 35.0% | |
| CATCAGCAATGAAATTGTCA+TGG | - | Chr4:65754435-65754454 | MsG0480021896.01.T01:CDS | 35.0% | |
| GGGGAATAGAAAATTGATAG+AGG | - | Chr4:65754163-65754182 | MsG0480021896.01.T01:three_prime_UTR | 35.0% | |
| AACTGGACAGGTGAAGAAAT+AGG | + | Chr4:65754861-65754880 | None:intergenic | 40.0% | |
| AGTTCATACTAATTGCGACG+AGG | + | Chr4:65755324-65755343 | None:intergenic | 40.0% | |
| GAAGAAATAGGAGACAAACC+TGG | + | Chr4:65754849-65754868 | None:intergenic | 40.0% | |
| GAATGGGAAAGGGTTTGATA+TGG | - | Chr4:65755028-65755047 | MsG0480021896.01.T01:intron | 40.0% | |
| GTTCATACTAATTGCGACGA+GGG | + | Chr4:65755323-65755342 | None:intergenic | 40.0% | |
| TTGATGTAACACCGTTACAC+TGG | + | Chr4:65754503-65754522 | None:intergenic | 40.0% | |
| ! | TGAGGTACGTGCAATGTTTT+GGG | - | Chr4:65755172-65755191 | MsG0480021896.01.T01:intron | 40.0% |
| !! | AAGTTTGGTGTGTTGCAGAA+TGG | - | Chr4:65755011-65755030 | MsG0480021896.01.T01:intron | 40.0% |
| !! | AGTTTGGTGTGTTGCAGAAT+GGG | - | Chr4:65755012-65755031 | MsG0480021896.01.T01:intron | 40.0% |
| AAAGGGTTTGATATGGGCGA+CGG | - | Chr4:65755035-65755054 | MsG0480021896.01.T01:intron | 45.0% | |
| AATAGGAGACAAACCTGGAC+AGG | + | Chr4:65754844-65754863 | None:intergenic | 45.0% | |
| ACTAATTGCGACGAGGGAAA+TGG | + | Chr4:65755317-65755336 | None:intergenic | 45.0% | |
| GAAAGAAAACGGTGTGCAAC+TGG | + | Chr4:65754723-65754742 | None:intergenic | 45.0% | |
| GAGGATCCAAACCAGTGTAA+CGG | - | Chr4:65754489-65754508 | MsG0480021896.01.T01:CDS | 45.0% | |
| GTGTGTTGCAGAATGGGAAA+GGG | - | Chr4:65755018-65755037 | MsG0480021896.01.T01:intron | 45.0% | |
| GTTGATCAGGTAATGTGACG+AGG | + | Chr4:65755289-65755308 | None:intergenic | 45.0% | |
| ! | CTGAGGTACGTGCAATGTTT+TGG | - | Chr4:65755171-65755190 | MsG0480021896.01.T01:intron | 45.0% |
| ! | GTAACACCGTTACACTGGTT+TGG | + | Chr4:65754498-65754517 | None:intergenic | 45.0% |
| ! | TTTGGGTGGGTTCTGATGAA+CGG | - | Chr4:65755189-65755208 | MsG0480021896.01.T01:intron | 45.0% |
| !! | GGAAATGGAAGGTGTTGATC+AGG | + | Chr4:65755302-65755321 | None:intergenic | 45.0% |
| !! | GTACGTGCAATGTTTTGGGT+GGG | - | Chr4:65755176-65755195 | MsG0480021896.01.T01:intron | 45.0% |
| AAAACGGTGTGCAACTGGTC+GGG | + | Chr4:65754718-65754737 | None:intergenic | 50.0% | |
| AAGACTGGCGAAGAAAGCTG+AGG | - | Chr4:65755154-65755173 | MsG0480021896.01.T01:intron | 50.0% | |
| ACTGACATTCGCTGCAAGAC+TGG | - | Chr4:65755139-65755158 | MsG0480021896.01.T01:intron | 50.0% | |
| AGTCTTGCAGCGAATGTCAG+TGG | + | Chr4:65755140-65755159 | None:intergenic | 50.0% | |
| ATTGCGACGAGGGAAATGGA+AGG | + | Chr4:65755313-65755332 | None:intergenic | 50.0% | |
| GAAAACGGTGTGCAACTGGT+CGG | + | Chr4:65754719-65754738 | None:intergenic | 50.0% | |
| GATCAGGTAATGTGACGAGG+AGG | + | Chr4:65755286-65755305 | None:intergenic | 50.0% | |
| GCAGAGGATCTGCATGGAAT+AGG | - | Chr4:65755057-65755076 | MsG0480021896.01.T01:intron | 50.0% | |
| GGTGTGTTGCAGAATGGGAA+AGG | - | Chr4:65755017-65755036 | MsG0480021896.01.T01:intron | 50.0% | |
| GTCGGGACCGAGAAGAATTA+GGG | + | Chr4:65754701-65754720 | None:intergenic | 50.0% | |
| ! | CTACATTGGATTCGGCTCGT+AGG | + | Chr4:65755433-65755452 | None:intergenic | 50.0% |
| !! | GGTACGTGCAATGTTTTGGG+TGG | - | Chr4:65755175-65755194 | MsG0480021896.01.T01:intron | 50.0% |
| GCGAATGTCAGTGGCAACGA+AGG | + | Chr4:65755131-65755150 | None:intergenic | 55.0% | |
| GGTCGGGACCGAGAAGAATT+AGG | + | Chr4:65754702-65754721 | None:intergenic | 55.0% | |
| TTTGATATGGGCGACGGCAG+AGG | - | Chr4:65755041-65755060 | MsG0480021896.01.T01:intron | 55.0% | |
| ACAGGTGAACTGCGTGGGTG+TGG | + | Chr4:65754826-65754845 | None:intergenic | 60.0% | |
| ACCTGGACAGGTGAACTGCG+TGG | + | Chr4:65754832-65754851 | None:intergenic | 60.0% | |
| CCTGGACAGGTGAACTGCGT+GGG | + | Chr4:65754831-65754850 | None:intergenic | 60.0% | |
| CCCACGCAGTTCACCTGTCC+AGG | - | Chr4:65754828-65754847 | MsG0480021896.01.T01:intron | 65.0% | |
| GCGACGGCAGAGGATCTGCA+TGG | - | Chr4:65755051-65755070 | MsG0480021896.01.T01:intron | 65.0% | |
| GGTGAACTGCGTGGGTGTGG+CGG | + | Chr4:65754823-65754842 | None:intergenic | 65.0% | |
| GTACGGAGGACCACCGGAGA+GGG | + | Chr4:65754799-65754818 | None:intergenic | 65.0% | |
| TACGGAGGACCACCGGAGAG+GGG | + | Chr4:65754798-65754817 | None:intergenic | 65.0% | |
| TGCGTGGGTGTGGCGGTGTA+CGG | + | Chr4:65754816-65754835 | None:intergenic | 65.0% | |
| TGTACGGAGGACCACCGGAG+AGG | + | Chr4:65754800-65754819 | None:intergenic | 65.0% | |
| GGCGGTGTACGGAGGACCAC+CGG | + | Chr4:65754805-65754824 | None:intergenic | 70.0% | |
| GTGGGTGTGGCGGTGTACGG+AGG | + | Chr4:65754813-65754832 | None:intergenic | 70.0% | |
| AACCCGCCGCCACCCCTCTC+CGG | - | Chr4:65754783-65754802 | MsG0480021896.01.T01:intron | 75.0% | |
| GGACCACCGGAGAGGGGTGG+CGG | + | Chr4:65754792-65754811 | None:intergenic | 75.0% | |
| GGAGGACCACCGGAGAGGGG+TGG | + | Chr4:65754795-65754814 | None:intergenic | 75.0% | |
| !! | CACCGGAGAGGGGTGGCGGC+GGG | + | Chr4:65754788-65754807 | None:intergenic | 80.0% |
| !! | CCACCGGAGAGGGGTGGCGG+CGG | + | Chr4:65754789-65754808 | None:intergenic | 80.0% |
| ! | CCGCCGCCACCCCTCTCCGG+TGG | - | Chr4:65754786-65754805 | MsG0480021896.01.T01:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 65754059 | 65755584 | 65754059 | ID=MsG0480021896.01;Name=MsG0480021896.01 |
| Chr4 | mRNA | 65754059 | 65755584 | 65754059 | ID=MsG0480021896.01.T01;Parent=MsG0480021896.01;Name=MsG0480021896.01.T01;_AED=0.54;_eAED=0.54;_QI=0|0|0.5|0.5|0|0.5|2|244|127 |
| Chr4 | exon | 65754059 | 65754614 | 65754059 | ID=MsG0480021896.01.T01:exon:8004;Parent=MsG0480021896.01.T01 |
| Chr4 | exon | 65755513 | 65755584 | 65755513 | ID=MsG0480021896.01.T01:exon:8003;Parent=MsG0480021896.01.T01 |
| Chr4 | CDS | 65755513 | 65755584 | 65755513 | ID=MsG0480021896.01.T01:cds;Parent=MsG0480021896.01.T01 |
| Chr4 | CDS | 65754303 | 65754614 | 65754303 | ID=MsG0480021896.01.T01:cds;Parent=MsG0480021896.01.T01 |
| Chr4 | three_prime_UTR | 65754059 | 65754302 | 65754059 | ID=MsG0480021896.01.T01:three_prime_utr;Parent=MsG0480021896.01.T01 |
| Gene Sequence |
| Protein sequence |
