AlfalfaGEDB | MsG0380016317.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016317.01

KEGG: -
GO: -
PFAM: PF04570

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016317.01.T01	XP_003601999.1	88.144	194	12	3	1	193	1	184	2.39E-120	349

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016317.01.T01	Q9SGZ8	33.495	206	93	7	1	206	1	162	8.95E-23	92.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016317.01.T01	G7J4C7	88.144	194	12	3	1	193	1	184	1.14e-120	349

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005420.01	MsG0380016317.01	0.816749	4.710205e-52	3.366096e-49
MsG0380015486.01	MsG0380016317.01	0.815565	8.661471e-52	5.992516e-49
MsG0380016317.01	MsG0480018232.01	0.810414	1.166517e-50	7.026868e-48
MsG0380016317.01	MsG0580024820.01	0.825814	3.818617e-54	3.518231e-51
MsG0380016317.01	MsG0880045690.01	0.816107	6.558243e-52	4.605253e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016317.01.T01	MTR_3g087700	88.144	194	12	3	1	193	1	184	2.89e-124	349
MsG0380016317.01.T01	MTR_3g087700	85.714	154	11	3	1	153	1	144	3.86e-91	263
MsG0380016317.01.T01	MTR_3g073960	33.898	177	74	7	1	177	1	134	2.62e-21	86.3
MsG0380016317.01.T01	MTR_8g008840	53.571	56	25	1	127	181	32	87	2.70e-15	69.3
MsG0380016317.01.T01	MTR_4g099050	61.702	47	18	0	131	177	71	117	7.41e-15	69.3
MsG0380016317.01.T01	MTR_5g013770	50.704	71	29	2	131	196	83	152	1.83e-14	68.6
MsG0380016317.01.T01	MTR_8g022950	44.286	70	36	1	133	202	39	105	8.78e-14	65.5
MsG0380016317.01.T01	MTR_4g124930	54.902	51	22	1	127	177	172	221	1.28e-11	62.4
MsG0380016317.01.T01	MTR_2g436020	58.537	41	17	0	133	173	64	104	1.30e-11	60.5
MsG0380016317.01.T01	MTR_2g436250	58.537	41	17	0	133	173	64	104	1.30e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016317.01.T01	AT1G78020	33.495	206	93	7	1	206	1	162	9.12e-24	92.8
MsG0380016317.01.T01	AT1G22160	35.196	179	61	8	1	179	1	124	1.19e-19	81.6
MsG0380016317.01.T01	AT4G39795	45.833	72	36	1	112	183	55	123	6.14e-17	74.3
MsG0380016317.01.T01	AT4G17670	62.000	50	19	0	128	177	71	120	1.35e-16	73.9
MsG0380016317.01.T01	AT5G65040	51.389	72	31	1	114	185	42	109	1.66e-16	72.8
MsG0380016317.01.T01	AT2G44670	62.000	50	18	1	131	179	14	63	6.20e-16	70.5
MsG0380016317.01.T01	AT5G47060	63.830	47	17	0	131	177	95	141	5.75e-15	70.1
MsG0380016317.01.T01	AT5G47060	63.830	47	17	0	131	177	95	141	5.75e-15	70.1
MsG0380016317.01.T01	AT1G53885	48.529	68	33	1	109	176	20	85	1.78e-12	62.4
MsG0380016317.01.T01	AT1G53903	48.529	68	33	1	109	176	20	85	1.78e-12	62.4

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Find 50 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAAGAAAAGTGGAAGA+TGG	0.529987	3:-81918199	MsG0380016317.01.T01:CDS
AAGACAAAAGAAAAGAAAAG+TGG	0.499141	3:-81918206	MsG0380016317.01.T01:CDS
AATAATATTGTTAGTGTTTG+TGG	0.326456	3:+81918848	None:intergenic
AATCCACATACGGTTGTGAT+GGG	0.578470	3:-81918960	MsG0380016317.01.T01:CDS
ACAAGCAGCAGTAGAAGCTT+TGG	0.372677	3:+81918125	None:intergenic
AGAACAAGAAGCATGAGTGG+TGG	0.691730	3:-81919122	MsG0380016317.01.T01:CDS
AGAAGAACAAGAAGCATGAG+TGG	0.643370	3:-81919125	MsG0380016317.01.T01:CDS
AGCAGTAGAAGCTTTGGCAG+TGG	0.548192	3:+81918131	None:intergenic
AGGTTGTTGGTTTGATCAGG+TGG	0.542107	3:+81919080	None:intergenic
AGTTACAGAGGCCACAAGTT+TGG	0.349033	3:+81918760	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAAGAAAAGTGGAAGA+TGG	-	Chr3:81919081-81919100	MsG0380016317.01.T01:CDS	30.0%
ACTAACCATAAGAGTTAGTT+AGG	-	Chr3:81918725-81918744	MsG0380016317.01.T01:CDS	30.0%
CGTTAAAAGTGAATTAACGA+TGG	-	Chr3:81918355-81918374	MsG0380016317.01.T01:intron	30.0%
CTTCTTGTTCTTCTCATAAT+TGG	+	Chr3:81918149-81918168	None:intergenic	30.0%
TTCATTCTAGTAGTTTGACT+AGG	-	Chr3:81918847-81918866	MsG0380016317.01.T01:CDS	30.0%
TTGAACCTAACTAACTCTTA+TGG	+	Chr3:81918733-81918752	None:intergenic	30.0%
AGACATCTACATGTATAGGT+AGG	-	Chr3:81918562-81918581	MsG0380016317.01.T01:intron	35.0%
CAACATCAAGAATCCACATA+CGG	-	Chr3:81918310-81918329	MsG0380016317.01.T01:intron	35.0%
CTTGTTCTTCTCATAATTGG+TGG	+	Chr3:81918146-81918165	None:intergenic	35.0%
AATCCACATACGGTTGTGAT+GGG	-	Chr3:81918320-81918339	MsG0380016317.01.T01:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	81918119	81919183	81918119	ID=MsG0380016317.01;Name=MsG0380016317.01
Chr3	mRNA	81918119	81919183	81918119	ID=MsG0380016317.01.T01;Parent=MsG0380016317.01;Name=MsG0380016317.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|206
Chr3	exon	81918723	81919183	81918723	ID=MsG0380016317.01.T01:exon:11667;Parent=MsG0380016317.01.T01
Chr3	exon	81918119	81918278	81918119	ID=MsG0380016317.01.T01:exon:11666;Parent=MsG0380016317.01.T01
Chr3	CDS	81918723	81919183	81918723	ID=MsG0380016317.01.T01:cds;Parent=MsG0380016317.01.T01
Chr3	CDS	81918119	81918278	81918119	ID=MsG0380016317.01.T01:cds;Parent=MsG0380016317.01.T01

Gene Sequence

>MsG0380016317.01.T01

ATGTTGCTTGGAAAACGTCCTCGACCACCAATTATGAGAAGAACAAGAAGCATGAGTGGTGGTTTGTCCGTGGACATGCAACCACCTGATCAAACCAACAACCTAGAATCCCATCATGAGGAAGAATCAGTGATGTCTCATCAGAATCCTCTGCAGCCACATCCACACCATGATGATCAAGAACATGGCATCAACATCAAGAATCCACATACGGTTGTGATGGGAACAGAAACACACGTTAAAAGTGAATTAACGATGGCTGATGAACGTTTAGTGGGTAGTGCAGTCATGTTCCCTTCACACACAGCCACAGCCACAAACACTAACAATATTATTAATCATAATAATAATCCTTTGAGTGTGAGTGCACATGATGTCATACATAGTACACCTCACTTTCTCCAAACTTGTGGCCTCTGTAACTGTCGTTTGGCTCCTGGTCGAGACATCTACATGTATAGGGGAGATACAGCATTTTGCAGTTTGGAGTGCAGGGAGCAACAAATAAAACAAGACAAAAGAAAAGAAAAGTGGAAGATGGCGTTCACCAACAAAGAAGACCACCGTGTATCACCACCGTGCACGGCCACTGCCAAAGCTTCTACTGCTGCTTGTACTTGA

Protein sequence

>MsG0380016317.01.T01

MLLGKRPRPPIMRRTRSMSGGLSVDMQPPDQTNNLESHHEEESVMSHQNPLQPHPHHDDQEHGINIKNPHTVVMGTETHVKSELTMADERLVGSAVMFPSHTATATNTNNIINHNNNPLSVSAHDVIHSTPHFLQTCGLCNCRLAPGRDIYMYRGDTAFCSLECREQQIKQDKRKEKWKMAFTNKEDHRVSPPCTATAKASTAACT*