AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018232.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018232.01.T01 MTR_4g007910 92.203 295 11 2 53 347 17 299 0.0 530
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018232.01.T01 AT1G16080 66.562 320 76 3 48 347 5 313 1.69e-151 429

Find 100 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTAATTAGTTACTTAC+AGG 0.250201 4:+1971361 MsG0480018232.01.T01:three_prime_UTR
TGCTTATGGCAAGTGGTCTT+TGG 0.280904 4:+1969125 MsG0480018232.01.T01:CDS
TTTCTAGTACAAACCAAAAT+AGG 0.303632 4:-1968203 None:intergenic
GACTCTGAATCTGAAATTCT+TGG 0.306101 4:-1968027 None:intergenic
TTGAAGCAATATGATGTAAA+TGG 0.309823 4:-1971418 None:intergenic
TTTCAACTCTTTAAGCCATT+TGG 0.333255 4:-1971248 None:intergenic
TGGAAAAGCTTTAGAAGGTA+TGG 0.356993 4:+1968121 MsG0480018232.01.T01:CDS
AAACCACTCCTCTTTCTAGA+TGG 0.363477 4:+1968249 MsG0480018232.01.T01:CDS
CCGTCTTGAACGCCAGGTTT+TGG 0.371462 4:+1969803 MsG0480018232.01.T01:CDS
CTGATGCTAGTTCTGCTATC+AGG 0.381223 4:-1970645 None:intergenic
ATTTGTTCTGTCATGCTTGT+TGG 0.385378 4:+1969870 MsG0480018232.01.T01:CDS
TAAGCAGCTGTCAATCCTTC+AGG 0.391739 4:-1969108 None:intergenic
AGAGTTGGAAAAGCTTTAGA+AGG 0.394622 4:+1968116 MsG0480018232.01.T01:CDS
GAAGGATTGACAGCTGCTTA+TGG 0.394793 4:+1969111 MsG0480018232.01.T01:CDS
TTCTGTTGGTGTTGTGGAAA+AGG 0.395942 4:+1969911 MsG0480018232.01.T01:CDS
TCACTTTCCCACGGCAGTTA+AGG 0.401542 4:+1970744 MsG0480018232.01.T01:CDS
AGGGGTTTCTGTTGGTGTTG+TGG 0.406514 4:+1969905 MsG0480018232.01.T01:CDS
GTATCAGTCTTACCATCAAT+AGG 0.407023 4:-1969081 None:intergenic
ATCAGCAGCAGCTAGTGAAA+AGG 0.412413 4:+1970663 MsG0480018232.01.T01:CDS
AAGTCTACACATATAGCTAA+TGG 0.412739 4:-1971322 None:intergenic
TATCAGTCTTACCATCAATA+GGG 0.414325 4:-1969080 None:intergenic
TCAGCAGCAGCTAGTGAAAA+GGG 0.417729 4:+1970664 MsG0480018232.01.T01:CDS
GAGAGTAAAGGTTTGAAAGA+TGG 0.424292 4:+1969012 MsG0480018232.01.T01:CDS
CTTGGAGAGTCCCCTATTGA+TGG 0.426493 4:+1969069 MsG0480018232.01.T01:CDS
GGTCATGTTTGCAGTTCAAA+TGG 0.443722 4:+1971152 MsG0480018232.01.T01:intron
ACGGTTCCAACATTCCATTC+TGG 0.447867 4:-1968984 None:intergenic
GACATGGATCCTGCTTGCCT+TGG 0.448950 4:-1971216 None:intergenic
AGAGTAAAGGTTTGAAAGAT+GGG 0.455581 4:+1969013 MsG0480018232.01.T01:CDS
CCAGCCGTCATTGTCGGCGG+TGG 0.458905 4:+1968092 MsG0480018232.01.T01:CDS
TTGTTGGAGCGCGTCATGGA+GGG 0.466204 4:+1969886 MsG0480018232.01.T01:CDS
GTTGCTCCAGCCGTCATTGT+CGG 0.466260 4:+1968086 MsG0480018232.01.T01:CDS
ACTCTGAATCTGAAATTCTT+GGG 0.469018 4:-1968026 None:intergenic
AGATGTTAGAGAAGCTCATA+TGG 0.474520 4:+1969847 MsG0480018232.01.T01:CDS
GGAAAAGCTTTAGAAGGTAT+GGG 0.482710 4:+1968122 MsG0480018232.01.T01:CDS
ATAGGACCTTCAAAATCAAC+GGG 0.484016 4:-1968185 None:intergenic
TATTTCGCAGTGTCAAAACT+TGG 0.486806 4:+1969051 MsG0480018232.01.T01:CDS
CGTCATGGAGGGGTTTCTGT+TGG 0.491161 4:+1969897 MsG0480018232.01.T01:CDS
ACATGGATCCTGCTTGCCTT+GGG 0.493651 4:-1971215 None:intergenic
CAAAACCTGGCGTTCAAGAC+GGG 0.495205 4:-1969802 None:intergenic
GACGGCTGGAGCAACTTTAG+TGG 0.498425 4:-1968078 None:intergenic
GGCTATTGCCCAAGGCAAGC+AGG 0.503997 4:+1971207 MsG0480018232.01.T01:CDS
AGTTCAAATGGAGGAATGGT+TGG 0.513675 4:+1971164 MsG0480018232.01.T01:intron
TGTTGGAGCGCGTCATGGAG+GGG 0.514554 4:+1969887 MsG0480018232.01.T01:CDS
CTTGTTGGAGCGCGTCATGG+AGG 0.518604 4:+1969885 MsG0480018232.01.T01:CDS
ATTGTCGGCGGTGGAAGAGT+TGG 0.520026 4:+1968101 MsG0480018232.01.T01:CDS
ATGCTTGTTGGAGCGCGTCA+TGG 0.522740 4:+1969882 MsG0480018232.01.T01:CDS
TCTGACCCGTCTTGAACGCC+AGG 0.526980 4:+1969797 MsG0480018232.01.T01:CDS
CTTTACCTCCTTAACTGCCG+TGG 0.529569 4:-1970752 None:intergenic
CTCGGGAGTACGCACACAAA+CGG 0.530423 4:-1970714 None:intergenic
CCACCGCCGACAATGACGGC+TGG 0.531385 4:-1968092 None:intergenic
CCAAAACCTGGCGTTCAAGA+CGG 0.533530 4:-1969803 None:intergenic
AGCTGTCAATCCTTCAGGAT+TGG 0.538382 4:-1969103 None:intergenic
CAATATGATGTAAATGGACA+TGG 0.539245 4:-1971412 None:intergenic
GTTTCTGAAAGATTGAAAGC+TGG 0.541448 4:+1969150 MsG0480018232.01.T01:CDS
CTGCGAAATATGCCAACACT+TGG 0.541538 4:-1969038 None:intergenic
CATGTCCTATGCATACCAAA+TGG 0.544512 4:+1971233 MsG0480018232.01.T01:CDS
GGGAAAGTGAGCAACAGCTC+GGG 0.545271 4:-1970731 None:intergenic
TGGGAAAGTGAGCAACAGCT+CGG 0.549510 4:-1970732 None:intergenic
GAACCGTGGCTTGAGAGTAA+AGG 0.552420 4:+1969000 MsG0480018232.01.T01:CDS
ATACCGTTCCATCTAGAAAG+AGG 0.554081 4:-1968257 None:intergenic
AATAGGACCTTCAAAATCAA+CGG 0.556089 4:-1968186 None:intergenic
TTAAGCCATTTGGTATGCAT+AGG 0.559098 4:-1971238 None:intergenic
CGCACACAAACGGTCTTCCA+TGG 0.562813 4:-1970704 None:intergenic
GTTAAAGTTTGAAGAAGCCA+TGG 0.564615 4:+1970687 MsG0480018232.01.T01:CDS
TGAATACTACCTTGCAAGAG+AGG 0.565186 4:-1969176 None:intergenic
GCTTTAGAAGGTATGGGAGA+TGG 0.570273 4:+1968128 MsG0480018232.01.T01:CDS
TTTACCTCCTTAACTGCCGT+GGG 0.574195 4:-1970751 None:intergenic
AGCTGGAGGCCTCTCTTGCA+AGG 0.574480 4:+1969167 MsG0480018232.01.T01:CDS
ATGCTTCCTTATCCAAAACC+TGG 0.574853 4:-1969815 None:intergenic
ATTCAGAGTCTCTTCCGCCA+TGG 0.580472 4:+1968040 MsG0480018232.01.T01:CDS
GAAAGATGGGAACCAAGTGT+TGG 0.583229 4:+1969026 MsG0480018232.01.T01:CDS
CGCTGTTGCTGTAAGAGTGG+AGG 0.583827 4:-1968000 None:intergenic
CTTTCCCACGGCAGTTAAGG+AGG 0.584441 4:+1970747 MsG0480018232.01.T01:CDS
TCTGAGAAGGCTATTGCCCA+AGG 0.586147 4:+1971199 MsG0480018232.01.T01:CDS
GGTGGTGACGGTAGAAGCCA+TGG 0.587494 4:-1968057 None:intergenic
TTGAACTCTCATGTGTCACT+AGG 0.596365 4:+1971289 MsG0480018232.01.T01:CDS
TTGCAGTTCAAATGGAGGAA+TGG 0.597693 4:+1971160 MsG0480018232.01.T01:intron
ATCAGTCTTACCATCAATAG+GGG 0.599930 4:-1969079 None:intergenic
TCTGAAAGATTGAAAGCTGG+AGG 0.599953 4:+1969153 MsG0480018232.01.T01:CDS
AGCTGTTGCTCACTTTCCCA+CGG 0.605457 4:+1970735 MsG0480018232.01.T01:CDS
CAGCAATAGCAATGATGATG+AGG 0.606129 4:-1967929 None:intergenic
CATGTTTGCAGTTCAAATGG+AGG 0.608904 4:+1971155 MsG0480018232.01.T01:intron
TGACAGCTGCTTATGGCAAG+TGG 0.617113 4:+1969118 MsG0480018232.01.T01:CDS
AAGACTGATACCAATCCTGA+AGG 0.623096 4:+1969093 MsG0480018232.01.T01:CDS
AGCAACTTTAGTGGTGGTGA+CGG 0.626999 4:-1968069 None:intergenic
CTGAGAAAGAAAAGAACGAG+TGG 0.629515 4:+1967825 None:intergenic
CATTTGGTATGCATAGGACA+TGG 0.629892 4:-1971232 None:intergenic
TGGACATGGTTATCTACATG+TGG 0.633706 4:-1971398 None:intergenic
GCTCCAGCCGTCATTGTCGG+CGG 0.635181 4:+1968089 MsG0480018232.01.T01:CDS
TCTTCCACCGCCGACAATGA+CGG 0.637956 4:-1968096 None:intergenic
AAAGCTTACTTACTTCAAGG+TGG 0.643257 4:-1969938 None:intergenic
AAGCGCTGTTGCTGTAAGAG+TGG 0.643492 4:-1968003 None:intergenic
AGAATGGAATGTTGGAACCG+TGG 0.644899 4:+1968986 MsG0480018232.01.T01:CDS
ACTCCTCTTTCTAGATGGAA+CGG 0.645963 4:+1968254 MsG0480018232.01.T01:CDS
AAACCTTTACTCTCAAGCCA+CGG 0.646640 4:-1969003 None:intergenic
CAGCAGCAGCTAGTGAAAAG+GGG 0.664557 4:+1970665 MsG0480018232.01.T01:CDS
GGCTGGAGCAACTTTAGTGG+TGG 0.691420 4:-1968075 None:intergenic
GTTCCATCTAGAAAGAGGAG+TGG 0.697057 4:-1968252 None:intergenic
AAAGATCTTGTTGTGAAACG+TGG 0.716380 4:+1968152 MsG0480018232.01.T01:CDS
GGTGACGGTAGAAGCCATGG+CGG 0.761423 4:-1968054 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCATTTAAAAATTAAAAATA+TGG - Chr4:1970321-1970340 None:intergenic 10.0%
!!! CCATATTTTTAATTTTTAAA+TGG + Chr4:1970318-1970337 MsG0480018232.01.T01:intron 10.0%
!!! TTAATAAAAACTTATTTTAC+GGG + Chr4:1969251-1969270 MsG0480018232.01.T01:intron 10.0%
!! AATTATGAATGTATTCTAAT+TGG - Chr4:1971067-1971086 None:intergenic 15.0%
!! ATTATGAATGTATTCTAATT+GGG - Chr4:1971066-1971085 None:intergenic 15.0%
!! GTTTATAATGAATTATTAAG+CGG + Chr4:1970119-1970138 MsG0480018232.01.T01:intron 15.0%
!!! GAACATATTTAATTTTAACT+TGG - Chr4:1970410-1970429 None:intergenic 15.0%
!! ATAACATGAGAATAAATTAG+AGG + Chr4:1970840-1970859 MsG0480018232.01.T01:intron 20.0%
!! TTAGTGTTTAATCAATATCT+TGG + Chr4:1971131-1971150 MsG0480018232.01.T01:intron 20.0%
!!! ATCATTTTAGTATTGCTATA+TGG + Chr4:1970294-1970313 MsG0480018232.01.T01:intron 20.0%
!!! TAGAAGAAAATTAATGGATA+TGG - Chr4:1969558-1969577 None:intergenic 20.0%
!!! TCATTTTAGTATTGCTATAT+GGG + Chr4:1970295-1970314 MsG0480018232.01.T01:intron 20.0%
!!! TTTTAATGACATAAAAGAGA+GGG + Chr4:1968853-1968872 MsG0480018232.01.T01:intron 20.0%
!!! TTTTTAATGACATAAAAGAG+AGG + Chr4:1968852-1968871 MsG0480018232.01.T01:intron 20.0%
! AAAAAGTAGTAGTACTACAA+AGG - Chr4:1971445-1971464 None:intergenic 25.0%
! AAGAGTAATTAGTTACTTAC+AGG + Chr4:1971361-1971380 MsG0480018232.01.T01:three_prime_UTR 25.0%
! AAGTTTATGAATTTCAAGCA+CGG + Chr4:1969638-1969657 MsG0480018232.01.T01:intron 25.0%
! ATCTTTAGATGAAAATCAGA+AGG + Chr4:1969402-1969421 MsG0480018232.01.T01:intron 25.0%
! ATTTGTATATATAGAGAGAG+TGG - Chr4:1970185-1970204 None:intergenic 25.0%
! CAATCTATTTATTCAGTTGT+TGG + Chr4:1970436-1970455 MsG0480018232.01.T01:intron 25.0%
! CGAAGATAGAAGAAAATTAA+TGG - Chr4:1969564-1969583 None:intergenic 25.0%
! CTAAAGATTGTGATACTTAT+GGG - Chr4:1968361-1968380 None:intergenic 25.0%
! GTTTGATATTTGTACAATAC+CGG + Chr4:1968705-1968724 MsG0480018232.01.T01:intron 25.0%
! TTAAGAAGTTTACCCAAAAA+AGG - Chr4:1968385-1968404 None:intergenic 25.0%
! TTATTCTCATGTTATCAGTA+TGG - Chr4:1970835-1970854 None:intergenic 25.0%
! TTGAAGCAATATGATGTAAA+TGG - Chr4:1971421-1971440 None:intergenic 25.0%
! TTTGTTACTATTTCAAGCTT+AGG - Chr4:1969596-1969615 None:intergenic 25.0%
!! GCATATTAACTTTGAGAAAA+TGG - Chr4:1969971-1969990 None:intergenic 25.0%
!! TTTCTAGTACAAACCAAAAT+AGG - Chr4:1968206-1968225 None:intergenic 25.0%
!!! AGTTGGATTATTTTTTGGTT+AGG - Chr4:1971017-1971036 None:intergenic 25.0%
!!! GATTTTTGAGGAACTAATTA+TGG + Chr4:1968875-1968894 MsG0480018232.01.T01:intron 25.0%
!!! TAAAAACTTATTTTACGGGA+CGG + Chr4:1969255-1969274 MsG0480018232.01.T01:intron 25.0%
!!! TGATGAGTTGGATTATTTTT+TGG - Chr4:1971022-1971041 None:intergenic 25.0%
!!! TTCACGTTTATTTTCCAAAT+CGG - Chr4:1969451-1969470 None:intergenic 25.0%
AAATCTTAGTAAGTCCGATT+TGG + Chr4:1969434-1969453 MsG0480018232.01.T01:intron 30.0%
AAATTGATTACCTATGTGTC+TGG + Chr4:1970505-1970524 MsG0480018232.01.T01:intron 30.0%
AAGTCTACACATATAGCTAA+TGG - Chr4:1971325-1971344 None:intergenic 30.0%
AATAGGACCTTCAAAATCAA+CGG - Chr4:1968189-1968208 None:intergenic 30.0%
AATGAGTTGTTACTATCGTT+TGG + Chr4:1968940-1968959 MsG0480018232.01.T01:intron 30.0%
AATTAAACCCCTCTAATCTT+AGG - Chr4:1969670-1969689 None:intergenic 30.0%
AATTGATTACCTATGTGTCT+GGG + Chr4:1970506-1970525 MsG0480018232.01.T01:intron 30.0%
AGAGTAAAGGTTTGAAAGAT+GGG + Chr4:1969013-1969032 MsG0480018232.01.T01:CDS 30.0%
ATCAATTTCTGTGTGCAAAT+AGG + Chr4:1970358-1970377 MsG0480018232.01.T01:intron 30.0%
ATGAATGAAATGTGATGAGT+TGG - Chr4:1971034-1971053 None:intergenic 30.0%
CAATATGATGTAAATGGACA+TGG - Chr4:1971415-1971434 None:intergenic 30.0%
CCATAAGTATCACAATCTTT+AGG + Chr4:1968359-1968378 MsG0480018232.01.T01:intron 30.0%
CCATAAGTTTCACATTCTTT+AGG + Chr4:1968298-1968317 MsG0480018232.01.T01:intron 30.0%
CCTAAAGAATGTGAAACTTA+TGG - Chr4:1968301-1968320 None:intergenic 30.0%
CCTAAAGATTGTGATACTTA+TGG - Chr4:1968362-1968381 None:intergenic 30.0%
GAAAATTCCTAAGATTAGAG+GGG + Chr4:1969660-1969679 MsG0480018232.01.T01:intron 30.0%
GGAAAATTCCTAAGATTAGA+GGG + Chr4:1969659-1969678 MsG0480018232.01.T01:intron 30.0%
GTAACCAAAACAAGAAAACT+TGG - Chr4:1969230-1969249 None:intergenic 30.0%
GTCATTCTATCTTCATTCAA+CGG + Chr4:1969477-1969496 MsG0480018232.01.T01:intron 30.0%
GTCTTATATTTCACAGATGA+TGG + Chr4:1970972-1970991 MsG0480018232.01.T01:intron 30.0%
TACAAACTGTACACTTCAAA+TGG + Chr4:1968667-1968686 MsG0480018232.01.T01:intron 30.0%
TATCAGTCTTACCATCAATA+GGG - Chr4:1969083-1969102 None:intergenic 30.0%
TCAATTTCATAGTTGCAACA+TGG - Chr4:1970566-1970585 None:intergenic 30.0%
TCATCTGTGAAATATAAGAC+TGG - Chr4:1970972-1970991 None:intergenic 30.0%
TTTCAACTCTTTAAGCCATT+TGG - Chr4:1971251-1971270 None:intergenic 30.0%
TTTGTCAATCAACATTTGCT+TGG + Chr4:1969997-1970016 MsG0480018232.01.T01:intron 30.0%
! AACTTTGAGAAAATGGCAAT+AGG - Chr4:1969964-1969983 None:intergenic 30.0%
! AATTGTGTCGTTAAGATAGT+TGG + Chr4:1970059-1970078 MsG0480018232.01.T01:intron 30.0%
! ACTCTGAATCTGAAATTCTT+GGG - Chr4:1968029-1968048 None:intergenic 30.0%
! ATAAAAGAGAGGGATTTTTG+AGG + Chr4:1968863-1968882 MsG0480018232.01.T01:intron 30.0%
! GGATTGCTTAACAATTTTTC+TGG + Chr4:1969339-1969358 MsG0480018232.01.T01:intron 30.0%
! TTTTCTTCTATCTTCGATGT+TGG + Chr4:1969568-1969587 MsG0480018232.01.T01:intron 30.0%
!! CTCACGTGTTATTGTATTTT+TGG + Chr4:1969318-1969337 MsG0480018232.01.T01:intron 30.0%
!! TGATTTTGAAGGTCCTATTT+TGG + Chr4:1968190-1968209 MsG0480018232.01.T01:CDS 30.0%
!!! ACAATCTTTAGGCCTTTTTT+GGG + Chr4:1968370-1968389 MsG0480018232.01.T01:intron 30.0%
AAACAAGAAAACTTGGCTAC+TGG - Chr4:1969223-1969242 None:intergenic 35.0%
AAAGCTTACTTACTTCAAGG+TGG - Chr4:1969941-1969960 None:intergenic 35.0%
AGAGAATTTCGTTCTTTGTC+TGG + Chr4:1970929-1970948 MsG0480018232.01.T01:intron 35.0%
AGATATTATCCCAGACACAT+AGG - Chr4:1970518-1970537 None:intergenic 35.0%
AGATGTTAGAGAAGCTCATA+TGG + Chr4:1969847-1969866 MsG0480018232.01.T01:CDS 35.0%
AGGAAAGCTTACTTACTTCA+AGG - Chr4:1969944-1969963 None:intergenic 35.0%
ATAGGACCTTCAAAATCAAC+GGG - Chr4:1968188-1968207 None:intergenic 35.0%
ATCAGTCTTACCATCAATAG+GGG - Chr4:1969082-1969101 None:intergenic 35.0%
ATTCTGATTCAACTGAACTC+TGG - Chr4:1969384-1969403 None:intergenic 35.0%
ATTTGTTCTGTCATGCTTGT+TGG + Chr4:1969870-1969889 MsG0480018232.01.T01:CDS 35.0%
CGGAAAATTCCTAAGATTAG+AGG + Chr4:1969658-1969677 MsG0480018232.01.T01:intron 35.0%
CTAACTTGAAAAAGTGACAG+TGG - Chr4:1968750-1968769 None:intergenic 35.0%
CTCAAATCTGCAATCTAAAG+AGG + Chr4:1968626-1968645 MsG0480018232.01.T01:intron 35.0%
GAGAGTAAAGGTTTGAAAGA+TGG + Chr4:1969012-1969031 MsG0480018232.01.T01:CDS 35.0%
GGTTTCGATATATACAGTGA+TGG + Chr4:1969498-1969517 MsG0480018232.01.T01:intron 35.0%
GTACAGTTTGTAACACATCA+TGG - Chr4:1968659-1968678 None:intergenic 35.0%
GTATCAGTCTTACCATCAAT+AGG - Chr4:1969084-1969103 None:intergenic 35.0%
GTTAAAGTTTGAAGAAGCCA+TGG + Chr4:1970687-1970706 MsG0480018232.01.T01:CDS 35.0%
TATTTCGCAGTGTCAAAACT+TGG + Chr4:1969051-1969070 MsG0480018232.01.T01:CDS 35.0%
TCTCCCAAAAAGAAAACAAC+AGG - Chr4:1969282-1969301 None:intergenic 35.0%
TGTGATACTTATGGGACTAA+TGG - Chr4:1968353-1968372 None:intergenic 35.0%
TGTGTCAGTGTTATCATGTA+TGG + Chr4:1970207-1970226 MsG0480018232.01.T01:intron 35.0%
TTAAGCCATTTGGTATGCAT+AGG - Chr4:1971241-1971260 None:intergenic 35.0%
TTGCACACAGAAATTGATGT+AGG - Chr4:1970356-1970375 None:intergenic 35.0%
TTGTAACACATCATGGATTC+AGG - Chr4:1968652-1968671 None:intergenic 35.0%
! AAAGATCTTGTTGTGAAACG+TGG + Chr4:1968152-1968171 MsG0480018232.01.T01:CDS 35.0%
! GACTCTGAATCTGAAATTCT+TGG - Chr4:1968030-1968049 None:intergenic 35.0%
! GTTTCTGAAAGATTGAAAGC+TGG + Chr4:1969150-1969169 MsG0480018232.01.T01:CDS 35.0%
! GTTTTTCCAGAATGGAATGT+TGG + Chr4:1968978-1968997 MsG0480018232.01.T01:CDS 35.0%
! TCACATTCTTTAGGCTTGTT+TGG + Chr4:1968307-1968326 MsG0480018232.01.T01:intron 35.0%
! TTTTATACAACCACATGTGC+CGG - Chr4:1968727-1968746 None:intergenic 35.0%
!! AGAGTTGGAAAAGCTTTAGA+AGG + Chr4:1968116-1968135 MsG0480018232.01.T01:CDS 35.0%
!! GGAAAAGCTTTAGAAGGTAT+GGG + Chr4:1968122-1968141 MsG0480018232.01.T01:CDS 35.0%
!! GTAGCCAAGTTTTCTTGTTT+TGG + Chr4:1969223-1969242 MsG0480018232.01.T01:intron 35.0%
!! GTTTTATGCTCTTTCTGAGA+AGG + Chr4:1971186-1971205 MsG0480018232.01.T01:CDS 35.0%
!! TGGAAAAGCTTTAGAAGGTA+TGG + Chr4:1968121-1968140 MsG0480018232.01.T01:CDS 35.0%
!!! CACAATCTTTAGGCCTTTTT+TGG + Chr4:1968369-1968388 MsG0480018232.01.T01:intron 35.0%
!!! GATTTGGTGTTTTTCCAGAA+TGG + Chr4:1968970-1968989 MsG0480018232.01.T01:intron 35.0%
!!! GGACCTGTTGTTTTCTTTTT+GGG + Chr4:1969276-1969295 MsG0480018232.01.T01:intron 35.0%
!!! TCAATTCCCGTTGATTTTGA+AGG + Chr4:1968179-1968198 MsG0480018232.01.T01:CDS 35.0%
AAACCACTCCTCTTTCTAGA+TGG + Chr4:1968249-1968268 MsG0480018232.01.T01:CDS 40.0%
AAACCTTTACTCTCAAGCCA+CGG - Chr4:1969006-1969025 None:intergenic 40.0%
AAGACTGATACCAATCCTGA+AGG + Chr4:1969093-1969112 MsG0480018232.01.T01:CDS 40.0%
AATACGCTGAAACCAGCTTA+CGG + Chr4:1968549-1968568 MsG0480018232.01.T01:intron 40.0%
ACTCCTCTTTCTAGATGGAA+CGG + Chr4:1968254-1968273 MsG0480018232.01.T01:CDS 40.0%
AGTGGCAATACATTGACAGT+AGG - Chr4:1970167-1970186 None:intergenic 40.0%
AGTTCAAATGGAGGAATGGT+TGG + Chr4:1971164-1971183 MsG0480018232.01.T01:intron 40.0%
ATACCGTTCCATCTAGAAAG+AGG - Chr4:1968260-1968279 None:intergenic 40.0%
ATGCTTCCTTATCCAAAACC+TGG - Chr4:1969818-1969837 None:intergenic 40.0%
ATTTCGTTCTTTGTCTGGTG+AGG + Chr4:1970934-1970953 MsG0480018232.01.T01:intron 40.0%
CATGTCCTATGCATACCAAA+TGG + Chr4:1971233-1971252 MsG0480018232.01.T01:CDS 40.0%
CATGTTTGCAGTTCAAATGG+AGG + Chr4:1971155-1971174 MsG0480018232.01.T01:intron 40.0%
CATTTGGTATGCATAGGACA+TGG - Chr4:1971235-1971254 None:intergenic 40.0%
CCATAGTCGTATGATGATCT+AGG + Chr4:1970873-1970892 MsG0480018232.01.T01:intron 40.0%
CCTAGATCATCATACGACTA+TGG - Chr4:1970876-1970895 None:intergenic 40.0%
GGATATTGCAATCAGTGAGT+TGG + Chr4:1970080-1970099 MsG0480018232.01.T01:intron 40.0%
GGTCATGTTTGCAGTTCAAA+TGG + Chr4:1971152-1971171 MsG0480018232.01.T01:intron 40.0%
TCTGAAAGATTGAAAGCTGG+AGG + Chr4:1969153-1969172 MsG0480018232.01.T01:CDS 40.0%
TCTGTGTGCAAATAGGTTGT+GGG + Chr4:1970365-1970384 MsG0480018232.01.T01:intron 40.0%
TGAATACTACCTTGCAAGAG+AGG - Chr4:1969179-1969198 None:intergenic 40.0%
TGGACATGGTTATCTACATG+TGG - Chr4:1971401-1971420 None:intergenic 40.0%
TTCTGTGTGCAAATAGGTTG+TGG + Chr4:1970364-1970383 MsG0480018232.01.T01:intron 40.0%
TTGCAGTTCAAATGGAGGAA+TGG + Chr4:1971160-1971179 MsG0480018232.01.T01:intron 40.0%
! CAGCAATAGCAATGATGATG+AGG - Chr4:1967932-1967951 None:intergenic 40.0%
! GCAATCAGTGAGTTGGATTA+GGG + Chr4:1970087-1970106 MsG0480018232.01.T01:intron 40.0%
! GTTGTTACTATCGTTTGGTG+TGG + Chr4:1968945-1968964 MsG0480018232.01.T01:intron 40.0%
! TGCAATCAGTGAGTTGGATT+AGG + Chr4:1970086-1970105 MsG0480018232.01.T01:intron 40.0%
! TTGAACTCTCATGTGTCACT+AGG + Chr4:1971289-1971308 MsG0480018232.01.T01:CDS 40.0%
!! TTCTGTTGGTGTTGTGGAAA+AGG + Chr4:1969911-1969930 MsG0480018232.01.T01:CDS 40.0%
!!! CGGACCTGTTGTTTTCTTTT+TGG + Chr4:1969275-1969294 MsG0480018232.01.T01:intron 40.0%
AAGCACTTGTGAGACTGTGT+AGG - Chr4:1968591-1968610 None:intergenic 45.0%
ACGGTTCCAACATTCCATTC+TGG - Chr4:1968987-1969006 None:intergenic 45.0%
AGAATGGAATGTTGGAACCG+TGG + Chr4:1968986-1969005 MsG0480018232.01.T01:CDS 45.0%
AGCTGTCAATCCTTCAGGAT+TGG - Chr4:1969106-1969125 None:intergenic 45.0%
ATCAGCAGCAGCTAGTGAAA+AGG + Chr4:1970663-1970682 MsG0480018232.01.T01:CDS 45.0%
CTGCGAAATATGCCAACACT+TGG - Chr4:1969041-1969060 None:intergenic 45.0%
CTTATGACATGTCCGTAAGC+TGG - Chr4:1968564-1968583 None:intergenic 45.0%
GAAAGATGGGAACCAAGTGT+TGG + Chr4:1969026-1969045 MsG0480018232.01.T01:CDS 45.0%
GAAGGATTGACAGCTGCTTA+TGG + Chr4:1969111-1969130 MsG0480018232.01.T01:CDS 45.0%
GATCATCATACGACTATGGC+AGG - Chr4:1970872-1970891 None:intergenic 45.0%
GTTCCATCTAGAAAGAGGAG+TGG - Chr4:1968255-1968274 None:intergenic 45.0%
TAAGCAGCTGTCAATCCTTC+AGG - Chr4:1969111-1969130 None:intergenic 45.0%
TCAGCAGCAGCTAGTGAAAA+GGG + Chr4:1970664-1970683 MsG0480018232.01.T01:CDS 45.0%
TGCTTATGGCAAGTGGTCTT+TGG + Chr4:1969125-1969144 MsG0480018232.01.T01:CDS 45.0%
TTGTACAATACCGGCACATG+TGG + Chr4:1968714-1968733 MsG0480018232.01.T01:intron 45.0%
TTTACCTCCTTAACTGCCGT+GGG - Chr4:1970754-1970773 None:intergenic 45.0%
! AGCAACTTTAGTGGTGGTGA+CGG - Chr4:1968072-1968091 None:intergenic 45.0%
!! ATCGTTTGGTGTGGCAGATT+TGG + Chr4:1968954-1968973 MsG0480018232.01.T01:intron 45.0%
!! CTGATGCTAGTTCTGCTATC+AGG - Chr4:1970648-1970667 None:intergenic 45.0%
!! GCTTTAGAAGGTATGGGAGA+TGG + Chr4:1968128-1968147 MsG0480018232.01.T01:CDS 45.0%
!!! TGAACGCCAGGTTTTGGATA+AGG + Chr4:1969809-1969828 MsG0480018232.01.T01:CDS 45.0%
!!! TTTTTGGTTAGGCTGCTACG+AGG - Chr4:1971006-1971025 None:intergenic 45.0%
!!! ATTAATAAAAACTTATTTTA+CGG + Chr4:1969250-1969269 MsG0480018232.01.T01:intron 5.0%
!!! TAATTTTTATTATTTATTGT+TGG + Chr4:1968907-1968926 MsG0480018232.01.T01:intron 5.0%
ACATGGATCCTGCTTGCCTT+GGG - Chr4:1971218-1971237 None:intergenic 50.0%
AGCTGTTGCTCACTTTCCCA+CGG + Chr4:1970735-1970754 MsG0480018232.01.T01:CDS 50.0%
ATTCAGAGTCTCTTCCGCCA+TGG + Chr4:1968040-1968059 MsG0480018232.01.T01:CDS 50.0%
CAAAACCTGGCGTTCAAGAC+GGG - Chr4:1969805-1969824 None:intergenic 50.0%
CAGCAGCAGCTAGTGAAAAG+GGG + Chr4:1970665-1970684 MsG0480018232.01.T01:CDS 50.0%
CCAAAACCTGGCGTTCAAGA+CGG - Chr4:1969806-1969825 None:intergenic 50.0%
CGTTCTTTGTCTGGTGAGGT+AGG + Chr4:1970938-1970957 MsG0480018232.01.T01:intron 50.0%
CTTGGAGAGTCCCCTATTGA+TGG + Chr4:1969069-1969088 MsG0480018232.01.T01:CDS 50.0%
CTTTACCTCCTTAACTGCCG+TGG - Chr4:1970755-1970774 None:intergenic 50.0%
GAACCGTGGCTTGAGAGTAA+AGG + Chr4:1969000-1969019 MsG0480018232.01.T01:CDS 50.0%
TCACTTTCCCACGGCAGTTA+AGG + Chr4:1970744-1970763 MsG0480018232.01.T01:CDS 50.0%
TCTGAGAAGGCTATTGCCCA+AGG + Chr4:1971199-1971218 MsG0480018232.01.T01:CDS 50.0%
TCTTTGTCTGGTGAGGTAGG+TGG + Chr4:1970941-1970960 MsG0480018232.01.T01:intron 50.0%
TGACAGCTGCTTATGGCAAG+TGG + Chr4:1969118-1969137 MsG0480018232.01.T01:CDS 50.0%
TGGGAAAGTGAGCAACAGCT+CGG - Chr4:1970735-1970754 None:intergenic 50.0%
! AAGCGCTGTTGCTGTAAGAG+TGG - Chr4:1968006-1968025 None:intergenic 50.0%
!! AGGGGTTTCTGTTGGTGTTG+TGG + Chr4:1969905-1969924 MsG0480018232.01.T01:CDS 50.0%
!! AGGTTGTGGGCTCTGACTTT+TGG + Chr4:1970378-1970397 MsG0480018232.01.T01:intron 50.0%
!! GGTTGTGGGCTCTGACTTTT+GGG + Chr4:1970379-1970398 MsG0480018232.01.T01:intron 50.0%
ATTGTCGGCGGTGGAAGAGT+TGG + Chr4:1968101-1968120 MsG0480018232.01.T01:CDS 55.0%
CGCACACAAACGGTCTTCCA+TGG - Chr4:1970707-1970726 None:intergenic 55.0%
CGCTGTTGCTGTAAGAGTGG+AGG - Chr4:1968003-1968022 None:intergenic 55.0%
CGTCATGGAGGGGTTTCTGT+TGG + Chr4:1969897-1969916 MsG0480018232.01.T01:CDS 55.0%
CTTTCCCACGGCAGTTAAGG+AGG + Chr4:1970747-1970766 MsG0480018232.01.T01:CDS 55.0%
GACATGGATCCTGCTTGCCT+TGG - Chr4:1971219-1971238 None:intergenic 55.0%
GACGGCTGGAGCAACTTTAG+TGG - Chr4:1968081-1968100 None:intergenic 55.0%
GGCTGGAGCAACTTTAGTGG+TGG - Chr4:1968078-1968097 None:intergenic 55.0%
GGGAAAGTGAGCAACAGCTC+GGG - Chr4:1970734-1970753 None:intergenic 55.0%
GTTGCTCCAGCCGTCATTGT+CGG + Chr4:1968086-1968105 MsG0480018232.01.T01:CDS 55.0%
TCTTCCACCGCCGACAATGA+CGG - Chr4:1968099-1968118 None:intergenic 55.0%
TTGTTGGAGCGCGTCATGGA+GGG + Chr4:1969886-1969905 MsG0480018232.01.T01:CDS 55.0%
! ATGCTTGTTGGAGCGCGTCA+TGG + Chr4:1969882-1969901 MsG0480018232.01.T01:CDS 55.0%
! CCGTCTTGAACGCCAGGTTT+TGG + Chr4:1969803-1969822 MsG0480018232.01.T01:CDS 55.0%
! CTCGGGAGTACGCACACAAA+CGG - Chr4:1970717-1970736 None:intergenic 55.0%
AGCTGGAGGCCTCTCTTGCA+AGG + Chr4:1969167-1969186 MsG0480018232.01.T01:CDS 60.0%
CTTGTTGGAGCGCGTCATGG+AGG + Chr4:1969885-1969904 MsG0480018232.01.T01:CDS 60.0%
GGCTATTGCCCAAGGCAAGC+AGG + Chr4:1971207-1971226 MsG0480018232.01.T01:CDS 60.0%
GTCTGGTGAGGTAGGTGGCT+AGG + Chr4:1970946-1970965 MsG0480018232.01.T01:intron 60.0%
TCTGACCCGTCTTGAACGCC+AGG + Chr4:1969797-1969816 MsG0480018232.01.T01:CDS 60.0%
TGTTGGAGCGCGTCATGGAG+GGG + Chr4:1969887-1969906 MsG0480018232.01.T01:CDS 60.0%
! GGTGACGGTAGAAGCCATGG+CGG - Chr4:1968057-1968076 None:intergenic 60.0%
!! GGTGGTGACGGTAGAAGCCA+TGG - Chr4:1968060-1968079 None:intergenic 60.0%
GCTCCAGCCGTCATTGTCGG+CGG + Chr4:1968089-1968108 MsG0480018232.01.T01:CDS 65.0%
CCACCGCCGACAATGACGGC+TGG - Chr4:1968095-1968114 None:intergenic 70.0%
CCAGCCGTCATTGTCGGCGG+TGG + Chr4:1968092-1968111 MsG0480018232.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 1967827 1971534 1967827 ID=MsG0480018232.01;Name=MsG0480018232.01
Chr4 mRNA 1967827 1971534 1967827 ID=MsG0480018232.01.T01;Parent=MsG0480018232.01;Name=MsG0480018232.01.T01;_AED=0.34;_eAED=0.35;_QI=31|0.8|0.83|1|0.8|0.66|6|186|360
Chr4 exon 1967827 1968275 1967827 ID=MsG0480018232.01.T01:exon:599;Parent=MsG0480018232.01.T01
Chr4 exon 1968971 1969188 1968971 ID=MsG0480018232.01.T01:exon:600;Parent=MsG0480018232.01.T01
Chr4 exon 1969786 1969947 1969786 ID=MsG0480018232.01.T01:exon:601;Parent=MsG0480018232.01.T01
Chr4 exon 1970637 1970768 1970637 ID=MsG0480018232.01.T01:exon:602;Parent=MsG0480018232.01.T01
Chr4 exon 1971166 1971446 1971166 ID=MsG0480018232.01.T01:exon:603;Parent=MsG0480018232.01.T01
Chr4 exon 1971477 1971534 1971477 ID=MsG0480018232.01.T01:exon:604;Parent=MsG0480018232.01.T01
Chr4 five_prime_UTR 1967827 1967857 1967827 ID=MsG0480018232.01.T01:five_prime_utr;Parent=MsG0480018232.01.T01
Chr4 CDS 1967858 1968275 1967858 ID=MsG0480018232.01.T01:cds;Parent=MsG0480018232.01.T01
Chr4 CDS 1968971 1969188 1968971 ID=MsG0480018232.01.T01:cds;Parent=MsG0480018232.01.T01
Chr4 CDS 1969786 1969947 1969786 ID=MsG0480018232.01.T01:cds;Parent=MsG0480018232.01.T01
Chr4 CDS 1970637 1970768 1970637 ID=MsG0480018232.01.T01:cds;Parent=MsG0480018232.01.T01
Chr4 CDS 1971166 1971318 1971166 ID=MsG0480018232.01.T01:cds;Parent=MsG0480018232.01.T01
Chr4 three_prime_UTR 1971319 1971446 1971319 ID=MsG0480018232.01.T01:three_prime_utr;Parent=MsG0480018232.01.T01
Chr4 three_prime_UTR 1971477 1971534 1971477 ID=MsG0480018232.01.T01:three_prime_utr;Parent=MsG0480018232.01.T01
Gene Sequence

>MsG0480018232.01.T01

ATGAATGCGATACGAGTGATAACGAAATTGATTGATATAAAAAACAAACTCAACAAAAAGAGCGAACATGTCCTCATCATCATTGCTATTGCTGTTAACAGCAAGCAAACACTAGCAATGTCTCTCTCTCTCTGTAGCTTTTCCTCCACTCTTACAGCAACAGCGCTTCCCAAGAATTTCAGATTCAGAGTCTCTTCCGCCATGGCTTCTACCGTCACCACCACTAAAGTTGCTCCAGCCGTCATTGTCGGCGGTGGAAGAGTTGGAAAAGCTTTAGAAGGTATGGGAGATGGTAAAGATCTTGTTGTGAAACGTGGTGATTCAATTCCCGTTGATTTTGAAGGTCCTATTTTGGTTTGTACTAGAAATGATGATCTTGATTCTGTTCTTCAAACCACTCCTCTTTCTAGATGGAACGATTTGGTGTTTTTCCAGAATGGAATGTTGGAACCGTGGCTTGAGAGTAAAGGTTTGAAAGATGGGAACCAAGTGTTGGCATATTTCGCAGTGTCAAAACTTGGAGAGTCCCCTATTGATGGTAAGACTGATACCAATCCTGAAGGATTGACAGCTGCTTATGGCAAGTGGTCTTTGGCTGTTTCTGAAAGATTGAAAGCTGGAGGCCTCTCTTGCAAGATAAATCATGTTCTGACCCGTCTTGAACGCCAGGTTTTGGATAAGGAAGCATTTCAAAAGCAGATGTTAGAGAAGCTCATATGGATTTGTTCTGTCATGCTTGTTGGAGCGCGTCATGGAGGGGTTTCTGTTGGTGTTGTGGAAAAGGAATTCCACCTTGAATTATGTAGCCTGATAGCAGAACTAGCATCAGCAGCAGCTAGTGAAAAGGGGTTAAAGTTTGAAGAAGCCATGGAAGACCGTTTGTGTGCGTACTCCCGAGCTGTTGCTCACTTTCCCACGGCAGTTAAGGAGTTCAAATGGAGGAATGGTTGGTTTTATGCTCTTTCTGAGAAGGCTATTGCCCAAGGCAAGCAGGATCCATGTCCTATGCATACCAAATGGCTTAAAGAGTTGAAAATTGTACAAGACTTGAAATTGAACTCTCATGTGTCACTAGGTCAATAG

Protein sequence

>MsG0480018232.01.T01

MNAIRVITKLIDIKNKLNKKSEHVLIIIAIAVNSKQTLAMSLSLCSFSSTLTATALPKNFRFRVSSAMASTVTTTKVAPAVIVGGGRVGKALEGMGDGKDLVVKRGDSIPVDFEGPILVCTRNDDLDSVLQTTPLSRWNDLVFFQNGMLEPWLESKGLKDGNQVLAYFAVSKLGESPIDGKTDTNPEGLTAAYGKWSLAVSERLKAGGLSCKINHVLTRLERQVLDKEAFQKQMLEKLIWICSVMLVGARHGGVSVGVVEKEFHLELCSLIAELASAAASEKGLKFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYALSEKAIAQGKQDPCPMHTKWLKELKIVQDLKLNSHVSLGQ*