AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003353.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003353.01.T01 MTR_1g060010 96.281 484 18 0 1 484 1 484 0.0 947
MsG0180003353.01.T01 MTR_7g104500 77.980 495 88 10 1 483 8 493 0.0 674
MsG0180003353.01.T01 MTR_7g104500 78.761 452 78 8 1 440 8 453 0.0 619
MsG0180003353.01.T01 MTR_3g055590 57.910 335 133 2 96 430 35 361 1.05e-110 334
MsG0180003353.01.T01 MTR_5g094120 58.503 294 120 1 137 430 74 365 1.63e-110 333
MsG0180003353.01.T02 MTR_1g060010 96.281 484 18 0 1 484 1 484 0.0 947
MsG0180003353.01.T02 MTR_7g104500 77.980 495 88 10 1 483 8 493 0.0 674
MsG0180003353.01.T02 MTR_7g104500 78.761 452 78 8 1 440 8 453 0.0 619
MsG0180003353.01.T02 MTR_3g055590 57.910 335 133 2 96 430 35 361 1.05e-110 334
MsG0180003353.01.T02 MTR_5g094120 58.503 294 120 1 137 430 74 365 1.63e-110 333
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003353.01.T01 AT3G52750 79.206 428 75 3 57 484 60 473 0.0 636
MsG0180003353.01.T01 AT3G52750 79.206 428 75 3 57 484 60 473 0.0 636
MsG0180003353.01.T01 AT3G52750 79.206 428 75 3 57 484 60 473 0.0 636
MsG0180003353.01.T01 AT2G36250 80.000 425 77 5 62 484 60 478 0.0 634
MsG0180003353.01.T01 AT2G36250 80.000 425 77 5 62 484 60 478 0.0 634
MsG0180003353.01.T01 AT2G36250 80.000 425 77 5 62 484 60 478 0.0 634
MsG0180003353.01.T01 AT2G36250 81.638 403 66 5 84 484 1 397 0.0 606
MsG0180003353.01.T01 AT3G52750 78.498 293 52 2 57 349 60 341 6.01e-145 419
MsG0180003353.01.T01 AT5G55280 56.686 344 145 2 89 430 38 379 1.09e-108 330
MsG0180003353.01.T02 AT3G52750 79.206 428 75 3 57 484 60 473 0.0 636
MsG0180003353.01.T02 AT3G52750 79.206 428 75 3 57 484 60 473 0.0 636
MsG0180003353.01.T02 AT3G52750 79.206 428 75 3 57 484 60 473 0.0 636
MsG0180003353.01.T02 AT2G36250 80.000 425 77 5 62 484 60 478 0.0 634
MsG0180003353.01.T02 AT2G36250 80.000 425 77 5 62 484 60 478 0.0 634
MsG0180003353.01.T02 AT2G36250 80.000 425 77 5 62 484 60 478 0.0 634
MsG0180003353.01.T02 AT2G36250 81.638 403 66 5 84 484 1 397 0.0 606
MsG0180003353.01.T02 AT3G52750 78.498 293 52 2 57 349 60 341 6.01e-145 419
MsG0180003353.01.T02 AT5G55280 56.686 344 145 2 89 430 38 379 1.09e-108 330

Find 58 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTGAAGAGGCAGTTTA+TGG 0.215321 1:-61027724 MsG0180003353.01.T01:CDS
CATAAATTTGAAGTTCAAAA+TGG 0.279116 1:-61028343 MsG0180003353.01.T01:exon
CGATGCACGGAGTTGAGTTT+TGG 0.280389 1:-61027891 MsG0180003353.01.T01:CDS
CAGGCGAAGATTAAAGTTAT+TGG 0.295298 1:-61027961 MsG0180003353.01.T01:CDS
GAGAAAGGGCAGTTCTAGTT+TGG 0.303814 1:-61028037 MsG0180003353.01.T01:CDS
GTAAATGAAGAAAGCGTAAT+TGG 0.318418 1:+61028627 None:intergenic
ATGATATGAACTACCATTAC+TGG 0.320091 1:+61028137 None:intergenic
TTAGGTAGTGAGAGAAAGTT+AGG 0.327999 1:-61028189 MsG0180003353.01.T01:CDS
CCCGAGGTTTCGATGCTTAG+AGG 0.362587 1:-61028087 MsG0180003353.01.T01:CDS
GCAGCATTCATTCCCATCTC+AGG 0.363659 1:+61027763 None:intergenic
TTGGAACTTACGCGAGGTCT+TGG 0.365517 1:-61027799 MsG0180003353.01.T01:CDS
AGTTGTGGGAATCATTTGAT+TGG 0.376656 1:+61028672 None:intergenic
AATGATTCCCACAACTTCTC+AGG 0.396756 1:-61028665 MsG0180003353.01.T01:five_prime_UTR
GGCAGTTTATGGAGCTGATA+TGG 0.402391 1:-61027713 MsG0180003353.01.T01:CDS
TTCATGAAATTAACTCTCAT+AGG 0.408018 1:+61028237 None:intergenic
GTTATTGGTGTGGGAGGTGG+TGG 0.408049 1:-61027946 MsG0180003353.01.T01:CDS
GAACCGTCTGCAGATTGGTT+TGG 0.412737 1:-61027818 MsG0180003353.01.T01:CDS
AAACTAGAACTGCCCTTTCT+CGG 0.425268 1:+61028039 None:intergenic
CCCTGCTGAATTTATAGCAT+TGG 0.436792 1:+61028290 None:intergenic
AAAGTTATTGGTGTGGGAGG+TGG 0.445941 1:-61027949 MsG0180003353.01.T01:CDS
AGAAAGGGCAGTTCTAGTTT+GGG 0.448129 1:-61028036 MsG0180003353.01.T01:CDS
CCAATCTGCAGACGGTTCTC+AGG 0.448678 1:+61027823 None:intergenic
GGGGTGTTTAATGTTGTTAG+AGG 0.449238 1:-61028270 MsG0180003353.01.T01:CDS
TCCAATGCTATAAATTCAGC+AGG 0.456266 1:-61028291 MsG0180003353.01.T01:CDS
TTTGATTGGAAAACTACAAC+GGG 0.468569 1:+61028686 None:intergenic
CACGGTGAATGTTCCGAGAA+AGG 0.470521 1:-61028052 MsG0180003353.01.T01:CDS
CCTGAGAACCGTCTGCAGAT+TGG 0.481006 1:-61027823 MsG0180003353.01.T01:CDS
GGATTTATCCGAGAGCTTAG+AGG 0.487506 1:-61028010 MsG0180003353.01.T01:CDS
GGGCAGTTCTAGTTTGGGTG+TGG 0.490329 1:-61028031 MsG0180003353.01.T01:CDS
CTAAAATAAATTATCAGGAT+AGG 0.496871 1:-61028762 None:intergenic
ACGGTGAATGTTCCGAGAAA+GGG 0.497100 1:-61028051 MsG0180003353.01.T01:CDS
AAGAGAAACCTGAGAAGTTG+TGG 0.506292 1:+61028657 None:intergenic
ACCTCTAAGCATCGAAACCT+CGG 0.514410 1:+61028086 None:intergenic
AAGATTAAAGTTATTGGTGT+GGG 0.518785 1:-61027955 MsG0180003353.01.T01:CDS
CCTCTAAGCATCGAAACCTC+GGG 0.534486 1:+61028087 None:intergenic
AGAGAAACCTGAGAAGTTGT+GGG 0.539209 1:+61028658 None:intergenic
CAGCATTCATTCCCATCTCA+GGG 0.540119 1:+61027764 None:intergenic
TAGTGAGAGTAATTACAGTC+AGG 0.547542 1:-61027980 MsG0180003353.01.T01:CDS
ATTAAAGTTATTGGTGTGGG+AGG 0.547943 1:-61027952 MsG0180003353.01.T01:CDS
AAGTAAAGAATCAATTGAAG+AGG 0.562654 1:-61027734 MsG0180003353.01.T01:CDS
AGATATATCCTCTAAGCTCT+CGG 0.568987 1:+61028002 None:intergenic
ACAATGAGCAAAGGTGGTCG+TGG 0.581416 1:-61028726 MsG0180003353.01.T01:five_prime_UTR
CTTACGCGAGGTCTTGGAGC+TGG 0.582616 1:-61027793 MsG0180003353.01.T01:CDS
ATTTGATTGGAAAACTACAA+CGG 0.588256 1:+61028685 None:intergenic
AAATGAACAATGAGCAAAGG+TGG 0.595670 1:-61028732 MsG0180003353.01.T01:five_prime_UTR
GAAGATTAAAGTTATTGGTG+TGG 0.599068 1:-61027956 MsG0180003353.01.T01:CDS
AGCTGGTGGTAACCCTGAGA+TGG 0.605521 1:-61027776 MsG0180003353.01.T01:CDS
ACGCGAGGTCTTGGAGCTGG+TGG 0.612340 1:-61027790 MsG0180003353.01.T01:CDS
TAGAGGTGAGGCGAGTAGCA+CGG 0.614398 1:-61028070 MsG0180003353.01.T01:CDS
CCAATGCTATAAATTCAGCA+GGG 0.638400 1:-61028290 MsG0180003353.01.T01:CDS
GGTTTCGATGCTTAGAGGTG+AGG 0.639410 1:-61028082 MsG0180003353.01.T01:CDS
GCTGGTGGTAACCCTGAGAT+GGG 0.642398 1:-61027775 MsG0180003353.01.T01:CDS
ATGATAGAGAGTTCGATGCA+CGG 0.654697 1:-61027904 MsG0180003353.01.T01:CDS
GGGAGGTGGTGGATCTAACG+CGG 0.675707 1:-61027935 MsG0180003353.01.T01:CDS
CAATGCTATAAATTCAGCAG+GGG 0.676383 1:-61028289 MsG0180003353.01.T01:CDS
GTTCCAAACCAATCTGCAGA+CGG 0.682388 1:+61027815 None:intergenic
AGACGGTTCTCAGGAAACAC+AGG 0.693113 1:+61027832 None:intergenic
ATTGGTTTGGAACTTACGCG+AGG 0.698954 1:-61027805 MsG0180003353.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATTAATTATTCAATTAA+AGG - Chr1:61026585-61026604 MsG0180003353.01.T01:intron 10.0%
!!! AAAATTTTTGATAGAAAAAT+TGG - Chr1:61023796-61023815 MsG0180003353.01.T01:three_prime_UTR 10.0%
!!! AATATATGTTCATTTTAAAT+TGG - Chr1:61025096-61025115 MsG0180003353.01.T01:CDS 10.0%
!!! AGTTTTTTTTTTTCATAAAA+AGG + Chr1:61028516-61028535 None:intergenic 10.0%
!!! ATATGTTCTAATTTAATTTT+TGG - Chr1:61026736-61026755 MsG0180003353.01.T01:intron 10.0%
!!! ATTGAATTATATTTTACATT+AGG - Chr1:61024372-61024391 MsG0180003353.01.T01:intron 10.0%
!! AATGATAGTTTAATGTTAAT+GGG - Chr1:61023554-61023573 MsG0180003353.01.T01:three_prime_UTR 15.0%
!! ATATAAAATAAGTCAATGTT+TGG + Chr1:61024481-61024500 None:intergenic 15.0%
!! ATTAATTATTCAATTAAAGG+AGG - Chr1:61026588-61026607 MsG0180003353.01.T01:intron 15.0%
!! CAATCAAGATTAAATATAAT+AGG - Chr1:61026654-61026673 MsG0180003353.01.T01:intron 15.0%
!! TAATGATAGTTTAATGTTAA+TGG - Chr1:61023553-61023572 MsG0180003353.01.T01:three_prime_UTR 15.0%
!! TATAAAATAAGTCAATGTTT+GGG + Chr1:61024480-61024499 None:intergenic 15.0%
!! TTATACACAAAAAATGAAAT+TGG + Chr1:61023513-61023532 None:intergenic 15.0%
!!! AAGTATTTATATTTTCCTTT+TGG + Chr1:61027432-61027451 None:intergenic 15.0%
!!! ATTTTCAAAAACTTTCAAAA+TGG + Chr1:61025227-61025246 None:intergenic 15.0%
!!! TCATTTTAATTTTCAAGTTT+AGG + Chr1:61025440-61025459 None:intergenic 15.0%
!!! TTTTTAATAGAATCATTTAC+AGG - Chr1:61026837-61026856 MsG0180003353.01.T01:intron 15.0%
!! AATCATTTACGAATTTCTTA+TGG + Chr1:61027205-61027224 None:intergenic 20.0%
!! AATTATAAAAGAAAATGCTG+AGG - Chr1:61025265-61025284 MsG0180003353.01.T01:intron 20.0%
!! AATTCGTAAATGATTTGAAA+TGG - Chr1:61027210-61027229 MsG0180003353.01.T01:intron 20.0%
!! ACAAATATTAGTATGTGTTA+GGG - Chr1:61024445-61024464 MsG0180003353.01.T01:intron 20.0%
!! ATAAAATAAGTCAATGTTTG+GGG + Chr1:61024479-61024498 None:intergenic 20.0%
!! ATTAAGTCACTAATAACAAA+AGG + Chr1:61023537-61023556 None:intergenic 20.0%
!! ATTATAAAAGAAAATGCTGA+GGG - Chr1:61025266-61025285 MsG0180003353.01.T01:intron 20.0%
!! ATTATCTTGTGTTTATTAGT+AGG - Chr1:61025305-61025324 MsG0180003353.01.T01:intron 20.0%
!! CAAAAATTAAATTAGCACTA+GGG + Chr1:61026900-61026919 None:intergenic 20.0%
!! CTATATTAAATCAAATGACA+TGG + Chr1:61027917-61027936 None:intergenic 20.0%
!! CTTATTCAAATATGTTAACA+AGG + Chr1:61028409-61028428 None:intergenic 20.0%
!! GTAAAAAAGATTTACATTGT+CGG - Chr1:61027847-61027866 MsG0180003353.01.T01:CDS 20.0%
!! TACAAATATTAGTATGTGTT+AGG - Chr1:61024444-61024463 MsG0180003353.01.T01:intron 20.0%
!! TCAAATTTAATAGATAAGAG+TGG + Chr1:61026459-61026478 None:intergenic 20.0%
!! TGAAGTAAAAAATTATGCAT+TGG + Chr1:61028255-61028274 None:intergenic 20.0%
!! TTAAGTCACTAATAACAAAA+GGG + Chr1:61023536-61023555 None:intergenic 20.0%
!! TTCTGAACTTCATATATTAT+TGG - Chr1:61026116-61026135 MsG0180003353.01.T01:CDS 20.0%
!!! AATATTTTCTGAAAGAAAAC+AGG + Chr1:61025057-61025076 None:intergenic 20.0%
!!! AATGCATAATTTTTTACTTC+AGG - Chr1:61028254-61028273 MsG0180003353.01.T01:CDS 20.0%
!!! AGAATCTTTTAAAGAAATCA+AGG + Chr1:61026624-61026643 None:intergenic 20.0%
!!! ATATTTTCTGAAAGAAAACA+GGG + Chr1:61025056-61025075 None:intergenic 20.0%
!!! ATGCATAATTTTTTACTTCA+GGG - Chr1:61028255-61028274 MsG0180003353.01.T01:CDS 20.0%
!!! ATTAGTTTCTTTTTAAGACA+AGG - Chr1:61024986-61025005 MsG0180003353.01.T01:intron 20.0%
!!! CATAAATTTGAAGTTCAAAA+TGG - Chr1:61023669-61023688 MsG0180003353.01.T01:three_prime_UTR 20.0%
!!! CATGTCATTTGATTTAATAT+AGG - Chr1:61027915-61027934 MsG0180003353.01.T01:CDS 20.0%
!!! CATTTTGAACTTCAAATTTA+TGG + Chr1:61023671-61023690 None:intergenic 20.0%
!!! GATAGAAAAATTGGATTTTT+AGG - Chr1:61023805-61023824 MsG0180003353.01.T01:intron 20.0%
!!! GTAACAGAAATTTTAACAAA+CGG - Chr1:61024582-61024601 MsG0180003353.01.T01:intron 20.0%
!!! TCCAAATTTTGAAACATTTA+GGG + Chr1:61025369-61025388 None:intergenic 20.0%
!!! TTAGTTTCTTTTTAAGACAA+GGG - Chr1:61024987-61025006 MsG0180003353.01.T01:intron 20.0%
!!! TTATTTTTGCTTAAATGAAC+AGG - Chr1:61023583-61023602 MsG0180003353.01.T01:three_prime_UTR 20.0%
!!! TTCATTATTCTAGTATTGAA+GGG - Chr1:61026038-61026057 MsG0180003353.01.T01:intron 20.0%
!!! TTCCAAATTTTGAAACATTT+AGG + Chr1:61025370-61025389 None:intergenic 20.0%
!!! TTTCATTATTCTAGTATTGA+AGG - Chr1:61026037-61026056 MsG0180003353.01.T01:intron 20.0%
! AAAAAATGAACAATGAGCAA+AGG - Chr1:61023277-61023296 MsG0180003353.01.T01:three_prime_UTR 25.0%
! AAGATTAAAGTTATTGGTGT+GGG - Chr1:61024057-61024076 MsG0180003353.01.T01:CDS 25.0%
! AAGGAAAATGTTCATAAAAC+AGG + Chr1:61028497-61028516 None:intergenic 25.0%
! AAGTAAAGAATCAATTGAAG+AGG - Chr1:61024278-61024297 MsG0180003353.01.T01:intron 25.0%
! AATACAAATTTGGTCATTTC+TGG - Chr1:61024892-61024911 MsG0180003353.01.T01:intron 25.0%
! ACCCTAAATGTTTCAAAATT+TGG - Chr1:61025365-61025384 MsG0180003353.01.T01:intron 25.0%
! ATACAACTGTCAATTTCAAT+CGG - Chr1:61028105-61028124 MsG0180003353.01.T01:CDS 25.0%
! ATTTGATTGGAAAACTACAA+CGG + Chr1:61023330-61023349 None:intergenic 25.0%
! CAAGAAAAATGAGAAGTAAA+CGG - Chr1:61025342-61025361 MsG0180003353.01.T01:intron 25.0%
! CATTTACTCAAAGATAACAA+CGG - Chr1:61028573-61028592 MsG0180003353.01.T01:five_prime_UTR 25.0%
! CCAAAAATTAAATTAGCACT+AGG + Chr1:61026901-61026920 None:intergenic 25.0%
! CTATTCTCTGAATATTACTT+GGG + Chr1:61027407-61027426 None:intergenic 25.0%
! GTGAATGAATTAAATCCATA+TGG - Chr1:61027871-61027890 MsG0180003353.01.T01:CDS 25.0%
! TAAAATAAGTCAATGTTTGG+GGG + Chr1:61024478-61024497 None:intergenic 25.0%
! TAATAGATAAGAGTGGATAT+AGG + Chr1:61026452-61026471 None:intergenic 25.0%
! TATTTGTAAATCATGTACCA+CGG + Chr1:61024432-61024451 None:intergenic 25.0%
! TCTATACCAATATCTAGTAA+AGG + Chr1:61026219-61026238 None:intergenic 25.0%
! TCTGATATCGAATACAAATT+TGG - Chr1:61024882-61024901 MsG0180003353.01.T01:intron 25.0%
! TGCTAAACACTATTATAACT+AGG + Chr1:61027167-61027186 None:intergenic 25.0%
! TTACTGAATTACCAACTATT+TGG - Chr1:61023480-61023499 MsG0180003353.01.T01:three_prime_UTR 25.0%
! TTCATGAAATTAACTCTCAT+AGG + Chr1:61023778-61023797 None:intergenic 25.0%
!! AAATTAAAATGAGCTTTTGC+AGG - Chr1:61025448-61025467 MsG0180003353.01.T01:intron 25.0%
!! CTAGACGATTCAAATTTTAA+AGG + Chr1:61026417-61026436 None:intergenic 25.0%
!! CTTTCTTCTTTAAGAAATCA+GGG + Chr1:61028172-61028191 None:intergenic 25.0%
!! GGAGTTTTCTTAGTATTTAT+CGG - Chr1:61024393-61024412 MsG0180003353.01.T01:intron 25.0%
!! GTTATTAATAACATTGGTCT+AGG - Chr1:61028278-61028297 MsG0180003353.01.T01:CDS 25.0%
!! TAGTACAAAGTGTCAAATAA+TGG - Chr1:61024628-61024647 MsG0180003353.01.T01:intron 25.0%
!! TTGAAAAGTATGAATGTACT+GGG + Chr1:61028739-61028758 None:intergenic 25.0%
!! TTTGAAAAGTATGAATGTAC+TGG + Chr1:61028740-61028759 None:intergenic 25.0%
!! TTTTCAACTAATTCCAGTAA+TGG - Chr1:61023862-61023881 MsG0180003353.01.T01:CDS 25.0%
!!! ATTAGCTTGTATTCTTGTAT+AGG - Chr1:61028432-61028451 MsG0180003353.01.T01:intron 25.0%
!!! ATTTTGTTTAGCTGGTATTT+GGG - Chr1:61027492-61027511 MsG0180003353.01.T01:intron 25.0%
!!! CCTAGTGCTAATTTAATTTT+TGG - Chr1:61026898-61026917 MsG0180003353.01.T01:intron 25.0%
!!! CGATTCAAATTTTAAAGGAA+CGG + Chr1:61026412-61026431 None:intergenic 25.0%
!!! GTTTTGGAAGAAAATTTTCT+GGG - Chr1:61023605-61023624 MsG0180003353.01.T01:three_prime_UTR 25.0%
!!! TATTTTGTTTAGCTGGTATT+TGG - Chr1:61027491-61027510 MsG0180003353.01.T01:intron 25.0%
!!! TGCATAATTTTTTACTTCAG+GGG - Chr1:61028256-61028275 MsG0180003353.01.T01:CDS 25.0%
!!! TTAGCTTGTATTCTTGTATA+GGG - Chr1:61028433-61028452 MsG0180003353.01.T01:intron 25.0%
AAACAAAAGCAGTGTAGAAT+TGG + Chr1:61026018-61026037 None:intergenic 30.0%
AAAGATAATGCATGAACAAC+AGG + Chr1:61025801-61025820 None:intergenic 30.0%
ACTAGATATTGGTATAGAGA+GGG - Chr1:61026221-61026240 MsG0180003353.01.T01:intron 30.0%
AGCATAACATTAATTGCAAC+CGG - Chr1:61027940-61027959 MsG0180003353.01.T01:CDS 30.0%
AGTTATCAGTAGTTCAATCA+AGG + Chr1:61024728-61024747 None:intergenic 30.0%
ATCAGAATTATGAGCATGAA+TGG + Chr1:61028046-61028065 None:intergenic 30.0%
ATGATATGAACTACCATTAC+TGG + Chr1:61023878-61023897 None:intergenic 30.0%
ATGCAAAACAGTAATAGTGA+AGG + Chr1:61026775-61026794 None:intergenic 30.0%
CAATTGTGATAGAGAAAAGA+TGG - Chr1:61025150-61025169 MsG0180003353.01.T01:CDS 30.0%
CATATGGAATATGATCAACA+TGG - Chr1:61027887-61027906 MsG0180003353.01.T01:CDS 30.0%
CATGTTGATCATATTCCATA+TGG + Chr1:61027889-61027908 None:intergenic 30.0%
CCAAGTAATATTCAGAGAAT+AGG - Chr1:61027405-61027424 MsG0180003353.01.T01:intron 30.0%
CCAGCTAAACAAAATATAAC+CGG + Chr1:61027487-61027506 None:intergenic 30.0%
CCTATTCTCTGAATATTACT+TGG + Chr1:61027408-61027427 None:intergenic 30.0%
CCTGATTTCTTAAAGAAGAA+AGG - Chr1:61028170-61028189 MsG0180003353.01.T01:CDS 30.0%
CTAAAAAACAACAAAGAGGT+GGG + Chr1:61026376-61026395 None:intergenic 30.0%
GAAGATTAAAGTTATTGGTG+TGG - Chr1:61024056-61024075 MsG0180003353.01.T01:CDS 30.0%
GAAGCTAAAAAACAACAAAG+AGG + Chr1:61026380-61026399 None:intergenic 30.0%
GATTTGAATTATACCTGTAG+TGG + Chr1:61027997-61028016 None:intergenic 30.0%
TAAAAAACAACAAAGAGGTG+GGG + Chr1:61026375-61026394 None:intergenic 30.0%
TAAGTTGCACAATTCACAAA+CGG + Chr1:61027060-61027079 None:intergenic 30.0%
TACTAGATATTGGTATAGAG+AGG - Chr1:61026220-61026239 MsG0180003353.01.T01:intron 30.0%
TATACTATTATCATGAAGCC+AGG - Chr1:61026500-61026519 MsG0180003353.01.T01:CDS 30.0%
TCAGGGGTTATTAATAACAT+TGG - Chr1:61028272-61028291 MsG0180003353.01.T01:CDS 30.0%
TGATTTAAAAGCTTACCACA+TGG + Chr1:61026544-61026563 None:intergenic 30.0%
TTATAACTAGGAATGATTGC+CGG + Chr1:61027155-61027174 None:intergenic 30.0%
TTATCATTAGACAACAGTTG+TGG + Chr1:61028653-61028672 None:intergenic 30.0%
TTGGTGAAATACCAAATAGT+TGG + Chr1:61023494-61023513 None:intergenic 30.0%
TTTCGTCCTTCAAATGAAAA+AGG + Chr1:61025569-61025588 None:intergenic 30.0%
TTTGATTGGAAAACTACAAC+GGG + Chr1:61023329-61023348 None:intergenic 30.0%
! AAAGAAATGCACAAAGCATT+GGG + Chr1:61028231-61028250 None:intergenic 30.0%
! AAGAAAATTTTCTGGGCAAA+TGG - Chr1:61023612-61023631 MsG0180003353.01.T01:three_prime_UTR 30.0%
! AAGAGTTGTTCATACAGTTT+TGG - Chr1:61028342-61028361 MsG0180003353.01.T01:exon 30.0%
! AATGTCCTTTTATCACTCTA+TGG - Chr1:61027372-61027391 MsG0180003353.01.T01:intron 30.0%
! CCTTTCTTCTTTAAGAAATC+AGG + Chr1:61028173-61028192 None:intergenic 30.0%
! GTAAATGAAGAAAGCGTAAT+TGG + Chr1:61023388-61023407 None:intergenic 30.0%
! TAGTATTGAAGGGCAATTTA+AGG - Chr1:61026048-61026067 MsG0180003353.01.T01:intron 30.0%
! TATTACTGTTTTGCATGCAA+TGG - Chr1:61026779-61026798 MsG0180003353.01.T01:intron 30.0%
! TGAATATTACTTGGGTTTTG+TGG + Chr1:61027399-61027418 None:intergenic 30.0%
! TTGCTTAAATGAACAGGTTT+TGG - Chr1:61023589-61023608 MsG0180003353.01.T01:three_prime_UTR 30.0%
!! CAGAGCTTGTTATAATTCTT+TGG - Chr1:61028471-61028490 MsG0180003353.01.T01:intron 30.0%
!! TCAAATTTTAAAGGAACGGA+GGG + Chr1:61026408-61026427 None:intergenic 30.0%
!! TTCAAATTTTAAAGGAACGG+AGG + Chr1:61026409-61026428 None:intergenic 30.0%
!! TTTTGTTTAGCTGGTATTTG+GGG - Chr1:61027493-61027512 MsG0180003353.01.T01:intron 30.0%
!!! GACATTTTTTGTGTGTTCAA+GGG - Chr1:61026151-61026170 MsG0180003353.01.T01:intron 30.0%
!!! GGTGTTTGTTTTAGTAATGT+AGG - Chr1:61024913-61024932 MsG0180003353.01.T01:intron 30.0%
!!! GGTTTTGGAAGAAAATTTTC+TGG - Chr1:61023604-61023623 MsG0180003353.01.T01:three_prime_UTR 30.0%
!!! GTTTGTTTTAGTAATGTAGG+AGG - Chr1:61024916-61024935 MsG0180003353.01.T01:intron 30.0%
!!! TGACATTTTTTGTGTGTTCA+AGG - Chr1:61026150-61026169 MsG0180003353.01.T01:intron 30.0%
AAAAAACAACAAAGAGGTGG+GGG + Chr1:61026374-61026393 None:intergenic 35.0%
AAATCTACATTTACCATCCC+AGG + Chr1:61025878-61025897 None:intergenic 35.0%
AAATGAACAATGAGCAAAGG+TGG - Chr1:61023280-61023299 MsG0180003353.01.T01:three_prime_UTR 35.0%
AATCTACATTTACCATCCCA+GGG + Chr1:61025877-61025896 None:intergenic 35.0%
AATTATGAGCATGAATGGCA+TGG + Chr1:61028041-61028060 None:intergenic 35.0%
AATTCCTTCTTGTGCTTGAA+TGG + Chr1:61025597-61025616 None:intergenic 35.0%
AGATATATCCTCTAAGCTCT+CGG + Chr1:61024013-61024032 None:intergenic 35.0%
AGCTACTATCTGACATCATT+GGG + Chr1:61024549-61024568 None:intergenic 35.0%
AGTTGTGGGAATCATTTGAT+TGG + Chr1:61023343-61023362 None:intergenic 35.0%
ATTAAAGTTATTGGTGTGGG+AGG - Chr1:61024060-61024079 MsG0180003353.01.T01:CDS 35.0%
ATTCAGAGAATAGGACCAAA+AGG - Chr1:61027414-61027433 MsG0180003353.01.T01:intron 35.0%
CAAAGAAATGCACAAAGCAT+TGG + Chr1:61028232-61028251 None:intergenic 35.0%
CAATGCTATAAATTCAGCAG+GGG - Chr1:61023723-61023742 MsG0180003353.01.T01:three_prime_UTR 35.0%
CAGAATATGAAAAGGAATCC+TGG + Chr1:61026521-61026540 None:intergenic 35.0%
CAGGCGAAGATTAAAGTTAT+TGG - Chr1:61024051-61024070 MsG0180003353.01.T01:CDS 35.0%
CAGTCTCCTTTACTAGATAT+TGG - Chr1:61026210-61026229 MsG0180003353.01.T01:intron 35.0%
CCAATGCTATAAATTCAGCA+GGG - Chr1:61023722-61023741 MsG0180003353.01.T01:three_prime_UTR 35.0%
GCACAGATGAAACATATACT+TGG + Chr1:61026333-61026352 None:intergenic 35.0%
GCTAAAAAACAACAAAGAGG+TGG + Chr1:61026377-61026396 None:intergenic 35.0%
GGGGAAAAAAAAAACAGCAT+GGG + Chr1:61026355-61026374 None:intergenic 35.0%
GTAATAGATCCTTCACTTAC+TGG - Chr1:61026925-61026944 MsG0180003353.01.T01:intron 35.0%
TAGCTACTATCTGACATCAT+TGG + Chr1:61024550-61024569 None:intergenic 35.0%
TAGTGAGAGTAATTACAGTC+AGG - Chr1:61024032-61024051 MsG0180003353.01.T01:CDS 35.0%
TATAACTAGGAATGATTGCC+GGG + Chr1:61027154-61027173 None:intergenic 35.0%
TCAATTGAAGAGGCAGTTTA+TGG - Chr1:61024288-61024307 MsG0180003353.01.T01:intron 35.0%
TCCAATGCTATAAATTCAGC+AGG - Chr1:61023721-61023740 MsG0180003353.01.T01:three_prime_UTR 35.0%
TCCTTCAAATGAAAAAGGAG+TGG + Chr1:61025564-61025583 None:intergenic 35.0%
TGAGTGCTTTATGCTATGTT+AGG - Chr1:61024763-61024782 MsG0180003353.01.T01:intron 35.0%
TGCTGATATTCGAGCTATAA+TGG - Chr1:61025898-61025917 MsG0180003353.01.T01:intron 35.0%
TGTGATAGAGAAAAGATGGA+AGG - Chr1:61025154-61025173 MsG0180003353.01.T01:CDS 35.0%
TTAGGTAGTGAGAGAAAGTT+AGG - Chr1:61023823-61023842 MsG0180003353.01.T01:CDS 35.0%
! ATCTAACTTTGTTTGAGGTG+AGG - Chr1:61026280-61026299 MsG0180003353.01.T01:CDS 35.0%
! CTTTGAGGACTAAATATTCG+TGG + Chr1:61027344-61027363 None:intergenic 35.0%
! GAGTGATCTAACTTTGTTTG+AGG - Chr1:61026275-61026294 MsG0180003353.01.T01:CDS 35.0%
! GCAGTTAATAGCTTGTCATT+TGG + Chr1:61025659-61025678 None:intergenic 35.0%
! GGACATTCTCTATTTCTTTG+AGG + Chr1:61027359-61027378 None:intergenic 35.0%
! TCTAACTTTGTTTGAGGTGA+GGG - Chr1:61026281-61026300 MsG0180003353.01.T01:CDS 35.0%
! TTCAAATTTTGCCATGCAGT+AGG + Chr1:61024676-61024695 None:intergenic 35.0%
!! ACCACTCCTTTTTCATTTGA+AGG - Chr1:61025560-61025579 MsG0180003353.01.T01:intron 35.0%
!! CCGGTTATATTTTGTTTAGC+TGG - Chr1:61027484-61027503 MsG0180003353.01.T01:intron 35.0%
!!! TTTTCTGCAATTGTTGGTTC+AGG - Chr1:61026074-61026093 MsG0180003353.01.T01:CDS 35.0%
AAAACCATTGCGTGCAAAAC+AGG + Chr1:61026821-61026840 None:intergenic 40.0%
AAACTAGAACTGCCCTTTCT+CGG + Chr1:61023976-61023995 None:intergenic 40.0%
AAGAGAAACCTGAGAAGTTG+TGG + Chr1:61023358-61023377 None:intergenic 40.0%
AAGTATGAATGTACTGGGAG+CGG + Chr1:61028734-61028753 None:intergenic 40.0%
AATGATTCCCACAACTTCTC+AGG - Chr1:61023347-61023366 MsG0180003353.01.T01:three_prime_UTR 40.0%
AGAGAAACCTGAGAAGTTGT+GGG + Chr1:61023357-61023376 None:intergenic 40.0%
AGATCCATTCAAGCACAAGA+AGG - Chr1:61025590-61025609 MsG0180003353.01.T01:intron 40.0%
AGATTGAATGCTTCCGTTAC+AGG + Chr1:61025698-61025717 None:intergenic 40.0%
AGTAGATGAAAGACTCGTGT+AGG - Chr1:61025124-61025143 MsG0180003353.01.T01:CDS 40.0%
ATGATAGAGAGTTCGATGCA+CGG - Chr1:61024108-61024127 MsG0180003353.01.T01:intron 40.0%
ATTGAATGCTTCCGTTACAG+GGG + Chr1:61025696-61025715 None:intergenic 40.0%
ATTGTGTGGAACATAACTGG+TGG - Chr1:61026252-61026271 MsG0180003353.01.T01:intron 40.0%
CAGTATTTCCTTGTATCCCT+AGG - Chr1:61027080-61027099 MsG0180003353.01.T01:intron 40.0%
CATCGAAATGATTCGATCTC+TGG - Chr1:61027300-61027319 MsG0180003353.01.T01:intron 40.0%
CCACATGGCAGAATATGAAA+AGG + Chr1:61026529-61026548 None:intergenic 40.0%
CCCTGCTGAATTTATAGCAT+TGG + Chr1:61023725-61023744 None:intergenic 40.0%
CGGGATGCAGATGTAAAAAA+GGG + Chr1:61023909-61023928 None:intergenic 40.0%
CTTACTTGACCAGTAAGTGA+AGG + Chr1:61026937-61026956 None:intergenic 40.0%
GATTGAATGCTTCCGTTACA+GGG + Chr1:61025697-61025716 None:intergenic 40.0%
GCAATACCTCGTTATACAGT+AGG - Chr1:61024785-61024804 MsG0180003353.01.T01:intron 40.0%
GCAGATGTAAAAAAGGGTCA+TGG + Chr1:61023903-61023922 None:intergenic 40.0%
GCTGATGATATTCTTCGACA+GGG - Chr1:61025719-61025738 MsG0180003353.01.T01:intron 40.0%
GGAATTGTGTGGAACATAAC+TGG - Chr1:61026249-61026268 MsG0180003353.01.T01:intron 40.0%
GGGGGAAAAAAAAAACAGCA+TGG + Chr1:61026356-61026375 None:intergenic 40.0%
GTAGATGAAAGACTCGTGTA+GGG - Chr1:61025125-61025144 MsG0180003353.01.T01:CDS 40.0%
GTGGTCCATAGAGTGATAAA+AGG + Chr1:61027380-61027399 None:intergenic 40.0%
GTGTGTTCAAGGGAAAACAA+GGG - Chr1:61026161-61026180 MsG0180003353.01.T01:intron 40.0%
TCCTGTAATGTGAACTTCTC+CGG - Chr1:61027465-61027484 MsG0180003353.01.T01:intron 40.0%
TCGGGATGCAGATGTAAAAA+AGG + Chr1:61023910-61023929 None:intergenic 40.0%
TGCAAGTTGCACAATTCCTA+GGG + Chr1:61027099-61027118 None:intergenic 40.0%
TGCTGATGATATTCTTCGAC+AGG - Chr1:61025718-61025737 MsG0180003353.01.T01:intron 40.0%
TGTGTGTTCAAGGGAAAACA+AGG - Chr1:61026160-61026179 MsG0180003353.01.T01:intron 40.0%
TTCTCAATCTACCCCTGTAA+CGG - Chr1:61025682-61025701 MsG0180003353.01.T01:intron 40.0%
TTGCACAATTCACAAACGGT+GGG + Chr1:61027056-61027075 None:intergenic 40.0%
TTGTGTGGAACATAACTGGT+GGG - Chr1:61026253-61026272 MsG0180003353.01.T01:intron 40.0%
TTTGCAACACCAGCAATGAT+CGG + Chr1:61025509-61025528 None:intergenic 40.0%
! AGGCTCTTTTCTGCAATTGT+TGG - Chr1:61026068-61026087 MsG0180003353.01.T01:intron 40.0%
! CCTTTTCATATTCTGCCATG+TGG - Chr1:61026526-61026545 MsG0180003353.01.T01:CDS 40.0%
! GGGGTGTTTAATGTTGTTAG+AGG - Chr1:61023742-61023761 MsG0180003353.01.T01:three_prime_UTR 40.0%
! TAAAATGAGCTTTTGCAGGC+TGG - Chr1:61025452-61025471 MsG0180003353.01.T01:intron 40.0%
! TCAATGGGTATACTGACTGT+TGG - Chr1:61025530-61025549 MsG0180003353.01.T01:intron 40.0%
!! AATGCTGGTTCTTCACTGAT+GGG - Chr1:61025923-61025942 MsG0180003353.01.T01:intron 40.0%
!! AGAAAGGGCAGTTCTAGTTT+GGG - Chr1:61023976-61023995 MsG0180003353.01.T01:intron 40.0%
!! GCAGAAGAGTATTAAACCCT+AGG + Chr1:61028209-61028228 None:intergenic 40.0%
!!! TTTTTTACATCTGCATCCCG+AGG - Chr1:61023909-61023928 MsG0180003353.01.T01:CDS 40.0%
AAAGTTATTGGTGTGGGAGG+TGG - Chr1:61024063-61024082 MsG0180003353.01.T01:CDS 45.0%
ACATGAAGAGAAGCCACTAC+AGG - Chr1:61027981-61028000 MsG0180003353.01.T01:CDS 45.0%
ACCGGAGAAGTTCACATTAC+AGG + Chr1:61027469-61027488 None:intergenic 45.0%
ACGGTGAATGTTCCGAGAAA+GGG - Chr1:61023961-61023980 MsG0180003353.01.T01:intron 45.0%
ACTACCATCATCAGAGAACG+AGG + Chr1:61028138-61028157 None:intergenic 45.0%
AGAAGTTATCTACGACCTCG+TGG - Chr1:61026873-61026892 MsG0180003353.01.T01:intron 45.0%
ATGAATGGCATGGATGGAGA+GGG + Chr1:61028031-61028050 None:intergenic 45.0%
ATGAGCATGAATGGCATGGA+TGG + Chr1:61028037-61028056 None:intergenic 45.0%
ATTGGTATAGAGAGGGCTAC+TGG - Chr1:61026228-61026247 MsG0180003353.01.T01:intron 45.0%
CAGCATTCATTCCCATCTCA+GGG + Chr1:61024251-61024270 None:intergenic 45.0%
CAGCATTTCCTTGTATCCCT+AGG - Chr1:61027117-61027136 MsG0180003353.01.T01:intron 45.0%
CATCAGTGAAGAACCAGCAT+TGG + Chr1:61025924-61025943 None:intergenic 45.0%
CCTCGTTATACAGTAGGACA+AGG - Chr1:61024791-61024810 MsG0180003353.01.T01:intron 45.0%
CCTTGTCCTACTGTATAACG+AGG + Chr1:61024794-61024813 None:intergenic 45.0%
CTGCAAGTTGCACAATTCCT+AGG + Chr1:61027100-61027119 None:intergenic 45.0%
CTTCTTCTCCTAGGGATACA+AGG + Chr1:61027128-61027147 None:intergenic 45.0%
GCACAATTCCTAGGGATACA+AGG + Chr1:61027091-61027110 None:intergenic 45.0%
GGATTTATCCGAGAGCTTAG+AGG - Chr1:61024002-61024021 MsG0180003353.01.T01:intron 45.0%
GGCAGTTTATGGAGCTGATA+TGG - Chr1:61024299-61024318 MsG0180003353.01.T01:intron 45.0%
GTTCCAAACCAATCTGCAGA+CGG + Chr1:61024200-61024219 None:intergenic 45.0%
GTTGCACAATTCACAAACGG+TGG + Chr1:61027057-61027076 None:intergenic 45.0%
TCGGTCTAAATGTTACACCG+TGG - Chr1:61024412-61024431 MsG0180003353.01.T01:intron 45.0%
TTCCTCTTGACGCTTGAATC+CGG + Chr1:61027962-61027981 None:intergenic 45.0%
! ATTTGGAACAGACGTGCTTG+CGG - Chr1:61025382-61025401 MsG0180003353.01.T01:intron 45.0%
! GAGAAAGGGCAGTTCTAGTT+TGG - Chr1:61023975-61023994 MsG0180003353.01.T01:intron 45.0%
! GATACCTGTTTTGCACGCAA+TGG - Chr1:61026814-61026833 MsG0180003353.01.T01:intron 45.0%
! TCAAAGAGCTCTAGTGAGAG+AGG + Chr1:61024513-61024532 None:intergenic 45.0%
!! ACCTCTAAGCATCGAAACCT+CGG + Chr1:61023929-61023948 None:intergenic 45.0%
!! ATGCTGGTTCTTCACTGATG+GGG - Chr1:61025924-61025943 MsG0180003353.01.T01:intron 45.0%
!! ATTGGTTTGGAACTTACGCG+AGG - Chr1:61024207-61024226 MsG0180003353.01.T01:intron 45.0%
!! CAATGCTGGTTCTTCACTGA+TGG - Chr1:61025922-61025941 MsG0180003353.01.T01:intron 45.0%
!! GCTGGTGTTGCAAAGTCAAT+GGG - Chr1:61025515-61025534 MsG0180003353.01.T01:intron 45.0%
!! TGCTGGTGTTGCAAAGTCAA+TGG - Chr1:61025514-61025533 MsG0180003353.01.T01:intron 45.0%
AACCGGATTCAAGCGTCAAG+AGG - Chr1:61027957-61027976 MsG0180003353.01.T01:CDS 50.0%
AATGGCTATAGCCTACAGCC+CGG - Chr1:61024646-61024665 MsG0180003353.01.T01:intron 50.0%
AATTAGCACTAGGGTCCACG+AGG + Chr1:61026891-61026910 None:intergenic 50.0%
ACAATGAGCAAAGGTGGTCG+TGG - Chr1:61023286-61023305 MsG0180003353.01.T01:three_prime_UTR 50.0%
ACTTACTGAGTGCAGATCCC+TGG - Chr1:61025857-61025876 MsG0180003353.01.T01:intron 50.0%
AGACGGTTCTCAGGAAACAC+AGG + Chr1:61024183-61024202 None:intergenic 50.0%
AGAGGGCTACTGGAATTGTG+TGG - Chr1:61026238-61026257 MsG0180003353.01.T01:intron 50.0%
ATGAATGTACTGGGAGCGGT+AGG + Chr1:61028730-61028749 None:intergenic 50.0%
ATGGATGGAGAGGGAATGAG+AGG + Chr1:61028022-61028041 None:intergenic 50.0%
CACGGTGAATGTTCCGAGAA+AGG - Chr1:61023960-61023979 MsG0180003353.01.T01:intron 50.0%
CATGAATGGCATGGATGGAG+AGG + Chr1:61028032-61028051 None:intergenic 50.0%
CCATCATCAGAGAACGAGGA+AGG + Chr1:61028134-61028153 None:intergenic 50.0%
CCCTAGGAGAAGAAGATACC+CGG - Chr1:61027133-61027152 MsG0180003353.01.T01:intron 50.0%
CCGGGTATCTTCTTCTCCTA+GGG + Chr1:61027136-61027155 None:intergenic 50.0%
CCTTCCTCGTTCTCTGATGA+TGG - Chr1:61028131-61028150 MsG0180003353.01.T01:CDS 50.0%
CGAGCTATAATGGCCAATGC+TGG - Chr1:61025908-61025927 MsG0180003353.01.T01:intron 50.0%
CTTACTGAGTGCAGATCCCT+GGG - Chr1:61025858-61025877 MsG0180003353.01.T01:intron 50.0%
GCAGCATTCATTCCCATCTC+AGG + Chr1:61024252-61024271 None:intergenic 50.0%
GGAACTGCGACTGGTATGTA+TGG - Chr1:61025950-61025969 MsG0180003353.01.T01:intron 50.0%
GGTTCTTCACTGATGGGGAT+AGG - Chr1:61025929-61025948 MsG0180003353.01.T01:intron 50.0%
GGTTTCGATGCTTAGAGGTG+AGG - Chr1:61023930-61023949 MsG0180003353.01.T01:CDS 50.0%
TGGATGGAGAGGGAATGAGA+GGG + Chr1:61028021-61028040 None:intergenic 50.0%
TTGCCATGCAGTAGGACTAC+CGG + Chr1:61024668-61024687 None:intergenic 50.0%
TTGGAACTTACGCGAGGTCT+TGG - Chr1:61024213-61024232 MsG0180003353.01.T01:intron 50.0%
! ACAGACTAGTCAGCTCACTC+AGG - Chr1:61028079-61028098 MsG0180003353.01.T01:CDS 50.0%
! CAGACTAGTCAGCTCACTCA+GGG - Chr1:61028080-61028099 MsG0180003353.01.T01:CDS 50.0%
! CGATGCACGGAGTTGAGTTT+TGG - Chr1:61024121-61024140 MsG0180003353.01.T01:intron 50.0%
! GAACCGTCTGCAGATTGGTT+TGG - Chr1:61024194-61024213 MsG0180003353.01.T01:intron 50.0%
! GAGCTTTTGCAGGCTGGAAT+GGG - Chr1:61025458-61025477 MsG0180003353.01.T01:intron 50.0%
! TGAGCTTTTGCAGGCTGGAA+TGG - Chr1:61025457-61025476 MsG0180003353.01.T01:intron 50.0%
!! CCTCTAAGCATCGAAACCTC+GGG + Chr1:61023928-61023947 None:intergenic 50.0%
AAGGACGCTCACGCTATCCT+AGG - Chr1:61028189-61028208 MsG0180003353.01.T01:CDS 55.0%
AAGGCTGTCAGCGTTGTCGA+CGG + Chr1:61024709-61024728 None:intergenic 55.0%
AGCTGGTGGTAACCCTGAGA+TGG - Chr1:61024236-61024255 MsG0180003353.01.T01:intron 55.0%
AGGACGCTCACGCTATCCTA+GGG - Chr1:61028190-61028209 MsG0180003353.01.T01:CDS 55.0%
ATGGGGATAGGAACTGCGAC+TGG - Chr1:61025941-61025960 MsG0180003353.01.T01:intron 55.0%
CCAATCTGCAGACGGTTCTC+AGG + Chr1:61024192-61024211 None:intergenic 55.0%
CCCGAGGTTTCGATGCTTAG+AGG - Chr1:61023925-61023944 MsG0180003353.01.T01:CDS 55.0%
CCTGAGAACCGTCTGCAGAT+TGG - Chr1:61024189-61024208 MsG0180003353.01.T01:intron 55.0%
GCCGGGTATCTTCTTCTCCT+AGG + Chr1:61027137-61027156 None:intergenic 55.0%
GCTGGTGGTAACCCTGAGAT+GGG - Chr1:61024237-61024256 MsG0180003353.01.T01:intron 55.0%
GTTATTGGTGTGGGAGGTGG+TGG - Chr1:61024066-61024085 MsG0180003353.01.T01:CDS 55.0%
TAGAGGTGAGGCGAGTAGCA+CGG - Chr1:61023942-61023961 MsG0180003353.01.T01:intron 55.0%
TGCCATGCAGTAGGACTACC+GGG + Chr1:61024667-61024686 None:intergenic 55.0%
! ATTCTTCGACAGGGCGTTCG+TGG - Chr1:61025728-61025747 MsG0180003353.01.T01:intron 55.0%
! CTTTTGCAGGCTGGAATGGG+TGG - Chr1:61025461-61025480 MsG0180003353.01.T01:intron 55.0%
!! GGGCAGTTCTAGTTTGGGTG+TGG - Chr1:61023981-61024000 MsG0180003353.01.T01:intron 55.0%
AGCCCGGTAGTCCTACTGCA+TGG - Chr1:61024662-61024681 MsG0180003353.01.T01:intron 60.0%
CAGTAGGACTACCGGGCTGT+AGG + Chr1:61024660-61024679 None:intergenic 60.0%
CTGAGTGCAGATCCCTGGGA+TGG - Chr1:61025862-61025881 MsG0180003353.01.T01:intron 60.0%
CTTACGCGAGGTCTTGGAGC+TGG - Chr1:61024219-61024238 MsG0180003353.01.T01:intron 60.0%
GGTGGTGCTCCGATCATTGC+TGG - Chr1:61025497-61025516 MsG0180003353.01.T01:intron 60.0%
TTGCAGGCTGGAATGGGTGG+TGG - Chr1:61025464-61025483 MsG0180003353.01.T01:intron 60.0%
!! GCTGGAATGGGTGGTGGAAC+CGG - Chr1:61025470-61025489 MsG0180003353.01.T01:intron 60.0%
!! GGGAGGTGGTGGATCTAACG+CGG - Chr1:61024077-61024096 MsG0180003353.01.T01:CDS 60.0%
ACGCGAGGTCTTGGAGCTGG+TGG - Chr1:61024222-61024241 MsG0180003353.01.T01:intron 65.0%
! GATCGGAGCACCACCTGTGC+CGG + Chr1:61025492-61025511 None:intergenic 65.0%
!! ATGGGTGGTGGAACCGGCAC+AGG - Chr1:61025476-61025495 MsG0180003353.01.T01:intron 65.0%
!! GGTGGTGGAACCGGCACAGG+TGG - Chr1:61025479-61025498 MsG0180003353.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 61023265 61028769 61023265 ID=MsG0180003353.01;Name=MsG0180003353.01
Chr1 mRNA 61023265 61028769 61023265 ID=MsG0180003353.01.T01;Parent=MsG0180003353.01;Name=MsG0180003353.01.T01;_AED=0.46;_eAED=0.46;_QI=220|1|1|1|0.85|0.75|8|552|484
Chr1 exon 61027702 61028362 61027702 ID=MsG0180003353.01.T01:exon:49562;Parent=MsG0180003353.01.T01
Chr1 exon 61028566 61028769 61028566 ID=MsG0180003353.01.T01:exon:49561;Parent=MsG0180003353.01.T01
Chr1 five_prime_UTR 61028566 61028769 61028566 ID=MsG0180003353.01.T01:five_prime_utr;Parent=MsG0180003353.01.T01
Chr1 five_prime_UTR 61028347 61028362 61028347 ID=MsG0180003353.01.T01:five_prime_utr;Parent=MsG0180003353.01.T01
Chr1 CDS 61027702 61028346 61027702 ID=MsG0180003353.01.T01:cds;Parent=MsG0180003353.01.T01
Chr1 CDS 61026265 61026564 61026265 ID=MsG0180003353.01.T01:cds;Parent=MsG0180003353.01.T01
Chr1 CDS 61026072 61026162 61026072 ID=MsG0180003353.01.T01:cds;Parent=MsG0180003353.01.T01
Chr1 CDS 61025738 61025862 61025738 ID=MsG0180003353.01.T01:cds;Parent=MsG0180003353.01.T01
Chr1 CDS 61025083 61025175 61025083 ID=MsG0180003353.01.T01:cds;Parent=MsG0180003353.01.T01
Chr1 CDS 61024032 61024097 61024032 ID=MsG0180003353.01.T01:cds;Parent=MsG0180003353.01.T01
Chr1 CDS 61023817 61023951 61023817 ID=MsG0180003353.01.T01:cds;Parent=MsG0180003353.01.T01
Chr1 three_prime_UTR 61023265 61023816 61023265 ID=MsG0180003353.01.T01:three_prime_utr;Parent=MsG0180003353.01.T01
Chr1 mRNA 61023265 61028742 61023265 ID=MsG0180003353.01.T02;Parent=MsG0180003353.01;Name=MsG0180003353.01.T02;_AED=0.46;_eAED=0.46;_QI=160|1|1|1|0.85|0.75|8|552|484
Chr1 exon 61027702 61028429 61027702 ID=MsG0180003353.01.T02:exon:49570;Parent=MsG0180003353.01.T02
Chr1 exon 61028666 61028742 61028666 ID=MsG0180003353.01.T02:exon:49569;Parent=MsG0180003353.01.T02
Chr1 five_prime_UTR 61028666 61028742 61028666 ID=MsG0180003353.01.T02:five_prime_utr;Parent=MsG0180003353.01.T02
Chr1 five_prime_UTR 61028347 61028429 61028347 ID=MsG0180003353.01.T02:five_prime_utr;Parent=MsG0180003353.01.T02
Chr1 CDS 61027702 61028346 61027702 ID=MsG0180003353.01.T02:cds;Parent=MsG0180003353.01.T02
Chr1 CDS 61026265 61026564 61026265 ID=MsG0180003353.01.T02:cds;Parent=MsG0180003353.01.T02
Chr1 CDS 61026072 61026162 61026072 ID=MsG0180003353.01.T02:cds;Parent=MsG0180003353.01.T02
Chr1 CDS 61025738 61025862 61025738 ID=MsG0180003353.01.T02:cds;Parent=MsG0180003353.01.T02
Chr1 CDS 61025083 61025175 61025083 ID=MsG0180003353.01.T02:cds;Parent=MsG0180003353.01.T02
Chr1 CDS 61024032 61024097 61024032 ID=MsG0180003353.01.T02:cds;Parent=MsG0180003353.01.T02
Chr1 CDS 61023817 61023951 61023817 ID=MsG0180003353.01.T02:cds;Parent=MsG0180003353.01.T02
Chr1 three_prime_UTR 61023265 61023816 61023265 ID=MsG0180003353.01.T02:three_prime_utr;Parent=MsG0180003353.01.T02
Gene Sequence

>MsG0180003353.01.T01

ATGGTGACTTGTGTGTCAACAAATTGTGCACATTCCAATGCTATAAATTCAGCAGGGGTGTTTAATGTTGTTAGAGGAAGAAAATTTCCTATGAGAGTTAATTTCATGAAAATTTTTGATAGAAAAATTGGATTTTTAGGTAGTGAGAGAAAGTTAGGTTTAGTTCAAGTTAAGTTTTCAACTAATTCCAGTAATGGTAGTTCATATCATAGCCATGACCCTTTTTTACATCTGCATCCCGAGGTTTCGATGCTTAGAGGTGAGGCGAGTAGCACGGTGAATGTTCCGAGAAAGGGCAGTTCTAGTTTGGGTGTGGATTTATCCGAGAGCTTAGAGGATATATCTAGTGAGAGTAATTACAGTCAGGCGAAGATTAAAGTTATTGGTGTGGGAGGTGGTGGATCTAACGCGGTGAATCGTATGATAGAGAGTTCGATGCACGGAGTTGAGTTTTGGATTGTTAATACTGATGTGCAAGCTATGAGAATGTCGCCTGTGTTTCCTGAGAACCGTCTGCAGATTGGTTTGGAACTTACGCGAGGTCTTGGAGCTGGTGGTAACCCTGAGATGGGAATGAATGCTGCGAAAGAAAGTAAAGAATCAATTGAAGAGGCAGTTTATGGAGCTGATATGGTCTTTGTTACAGCTGGAATGGGTGGTGGAACCGGCACAGGTGGTGCTCCGATCATTGCTGGTGTTGCAAAGTCAATGGGTATACTGACTGTTGGAATTGTCACCACTCCTTTTTCATTTGAAGGACGAAAGAGATCCATTCAAGCACAAGAAGGAATTACAGCTTTAAGAGATAATGTCGATACTCTAATAGTTATTCCAAATGACAAGCTATTAACTGCAGTTTCTCAATCTACCCCTGTAACGGAAGCATTCAATCTTGCTGATGATATTCTTCGACAGGGCGTTCGTGGCATATCTGATATTATTACAATCCCTGGGATGGTAAATGTAGATTTTGCTGATATTCGAGCTATAATGGCCAATGCTGGTTCTTCACTGATGGGGATAGGAACTGCGACTGGGAAAACAAGGGCAAGAGATGCTGCGTTAAATGCTATTCAGTCTCCTTTACTAGATATTGGTATAGAGAGGGCTACTGGAATTGTGTGGAACATAACTGGTGGGAGTGATCTAACTTTGTTTGAGGTAAATGCTGCTGCAGAAGTTATCTACGACCTCGTGGACCCTAGTGCTAATTTAATTTTTGGAGCAGTAATAGATCCTTCACTTACTGGTCAAGTAAGCATAACATTAATTGCAACCGGATTCAAGCGTCAAGAGGAACATGAAGAGAAGCCACTACAGACTAGTCAGCTCACTCAGGGAGATACAACTGTCAATTTCAATCGGCGACCTTCCTCGTTCTCTGATGATGGTAGTTTGTTTGAGATCCCTGATTTCTTAAAGAAGAAAGGACGCTCACGCTATCCTAGGGTTTAA

>MsG0180003353.01.T02

ATGGTGACTTGTGTGTCAACAAATTGTGCACATTCCAATGCTATAAATTCAGCAGGGGTGTTTAATGTTGTTAGAGGAAGAAAATTTCCTATGAGAGTTAATTTCATGAAAATTTTTGATAGAAAAATTGGATTTTTAGGTAGTGAGAGAAAGTTAGGTTTAGTTCAAGTTAAGTTTTCAACTAATTCCAGTAATGGTAGTTCATATCATAGCCATGACCCTTTTTTACATCTGCATCCCGAGGTTTCGATGCTTAGAGGTGAGGCGAGTAGCACGGTGAATGTTCCGAGAAAGGGCAGTTCTAGTTTGGGTGTGGATTTATCCGAGAGCTTAGAGGATATATCTAGTGAGAGTAATTACAGTCAGGCGAAGATTAAAGTTATTGGTGTGGGAGGTGGTGGATCTAACGCGGTGAATCGTATGATAGAGAGTTCGATGCACGGAGTTGAGTTTTGGATTGTTAATACTGATGTGCAAGCTATGAGAATGTCGCCTGTGTTTCCTGAGAACCGTCTGCAGATTGGTTTGGAACTTACGCGAGGTCTTGGAGCTGGTGGTAACCCTGAGATGGGAATGAATGCTGCGAAAGAAAGTAAAGAATCAATTGAAGAGGCAGTTTATGGAGCTGATATGGTCTTTGTTACAGCTGGAATGGGTGGTGGAACCGGCACAGGTGGTGCTCCGATCATTGCTGGTGTTGCAAAGTCAATGGGTATACTGACTGTTGGAATTGTCACCACTCCTTTTTCATTTGAAGGACGAAAGAGATCCATTCAAGCACAAGAAGGAATTACAGCTTTAAGAGATAATGTCGATACTCTAATAGTTATTCCAAATGACAAGCTATTAACTGCAGTTTCTCAATCTACCCCTGTAACGGAAGCATTCAATCTTGCTGATGATATTCTTCGACAGGGCGTTCGTGGCATATCTGATATTATTACAATCCCTGGGATGGTAAATGTAGATTTTGCTGATATTCGAGCTATAATGGCCAATGCTGGTTCTTCACTGATGGGGATAGGAACTGCGACTGGGAAAACAAGGGCAAGAGATGCTGCGTTAAATGCTATTCAGTCTCCTTTACTAGATATTGGTATAGAGAGGGCTACTGGAATTGTGTGGAACATAACTGGTGGGAGTGATCTAACTTTGTTTGAGGTAAATGCTGCTGCAGAAGTTATCTACGACCTCGTGGACCCTAGTGCTAATTTAATTTTTGGAGCAGTAATAGATCCTTCACTTACTGGTCAAGTAAGCATAACATTAATTGCAACCGGATTCAAGCGTCAAGAGGAACATGAAGAGAAGCCACTACAGACTAGTCAGCTCACTCAGGGAGATACAACTGTCAATTTCAATCGGCGACCTTCCTCGTTCTCTGATGATGGTAGTTTGTTTGAGATCCCTGATTTCTTAAAGAAGAAAGGACGCTCACGCTATCCTAGGGTTTAA

Protein sequence

>MsG0180003353.01.T01

MVTCVSTNCAHSNAINSAGVFNVVRGRKFPMRVNFMKIFDRKIGFLGSERKLGLVQVKFSTNSSNGSSYHSHDPFLHLHPEVSMLRGEASSTVNVPRKGSSSLGVDLSESLEDISSESNYSQAKIKVIGVGGGGSNAVNRMIESSMHGVEFWIVNTDVQAMRMSPVFPENRLQIGLELTRGLGAGGNPEMGMNAAKESKESIEEAVYGADMVFVTAGMGGGTGTGGAPIIAGVAKSMGILTVGIVTTPFSFEGRKRSIQAQEGITALRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGMVNVDFADIRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSLTGQVSITLIATGFKRQEEHEEKPLQTSQLTQGDTTVNFNRRPSSFSDDGSLFEIPDFLKKKGRSRYPRV*

>MsG0180003353.01.T02

MVTCVSTNCAHSNAINSAGVFNVVRGRKFPMRVNFMKIFDRKIGFLGSERKLGLVQVKFSTNSSNGSSYHSHDPFLHLHPEVSMLRGEASSTVNVPRKGSSSLGVDLSESLEDISSESNYSQAKIKVIGVGGGGSNAVNRMIESSMHGVEFWIVNTDVQAMRMSPVFPENRLQIGLELTRGLGAGGNPEMGMNAAKESKESIEEAVYGADMVFVTAGMGGGTGTGGAPIIAGVAKSMGILTVGIVTTPFSFEGRKRSIQAQEGITALRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGMVNVDFADIRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSLTGQVSITLIATGFKRQEEHEEKPLQTSQLTQGDTTVNFNRRPSSFSDDGSLFEIPDFLKKKGRSRYPRV*