AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016610.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016610.01.T01 MTR_3g090100 94.231 364 21 0 1 364 3 366 0.0 726
MsG0380016610.01.T01 MTR_3g090020 90.934 364 33 0 1 364 3 366 0.0 700
MsG0380016610.01.T01 MTR_3g089025 78.962 366 73 1 3 364 4 369 0.0 607
MsG0380016610.01.T01 MTR_3g090010 75.204 367 86 1 1 362 2 368 0.0 583
MsG0380016610.01.T01 MTR_1g029150 74.128 344 86 1 24 364 47 390 0.0 547
MsG0380016610.01.T01 MTR_5g024130 65.143 350 114 3 21 364 46 393 1.18e-170 481
MsG0380016610.01.T01 MTR_4g087440 65.143 350 114 3 21 364 46 393 1.21e-170 481
MsG0380016610.01.T01 MTR_3g090110 50.000 118 36 1 208 325 1 95 1.43e-31 115
MsG0380016610.01.T01 MTR_3g089980 59.794 97 26 1 229 325 7 90 8.35e-29 107
MsG0380016610.01.T01 MTR_3g089973 39.189 148 46 3 208 355 1 104 1.18e-19 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016610.01.T01 AT1G43800 68.644 354 106 2 16 364 38 391 0.0 517
MsG0380016610.01.T01 AT3G02630 64.793 338 115 2 27 362 59 394 2.17e-166 470
MsG0380016610.01.T01 AT5G16240 63.037 349 120 3 21 362 46 392 1.34e-165 468
MsG0380016610.01.T01 AT3G02610 59.677 372 130 5 12 364 41 411 1.14e-162 461
MsG0380016610.01.T01 AT3G02610 59.677 372 130 5 12 364 43 413 1.33e-162 461
MsG0380016610.01.T01 AT2G43710 63.422 339 121 2 27 364 65 401 2.86e-162 460
MsG0380016610.01.T01 AT2G43710 63.422 339 121 2 27 364 65 401 3.71e-162 460
MsG0380016610.01.T01 AT3G02620 59.890 364 134 4 12 364 41 403 5.17e-162 459
MsG0380016610.01.T01 AT3G02620 59.890 364 134 4 12 364 44 406 5.80e-162 459
MsG0380016610.01.T01 AT5G16230 61.696 342 126 3 27 364 61 401 8.20e-160 454
MsG0380016610.01.T01 AT5G16230 61.963 326 119 3 43 364 1 325 8.67e-154 436
MsG0380016610.01.T01 AT3G02620 61.890 328 118 3 43 364 1 327 1.33e-152 433

Find 95 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGATTATCTTGTGGTTT+TGG 0.263671 3:-85704723 MsG0380016610.01.T01:CDS
GAGACATTGAGTGTGTCTTT+TGG 0.299881 3:+85704924 None:intergenic
AATCTTGTGCCGCATCATTT+TGG 0.331259 3:+85703591 None:intergenic
CCAACTTGTTTATCCATGTT+TGG 0.336928 3:+85704663 None:intergenic
CGCCAGCTCCAATCAAATAT+TGG 0.345449 3:+85704489 None:intergenic
GTCTCACACCATGGGCTATA+TGG 0.350432 3:-85704613 MsG0380016610.01.T01:CDS
TTCTCAGGGCCTGCACTTGA+TGG 0.351234 3:+85704765 None:intergenic
GTGGACTTGCACCTAGATTA+AGG 0.352719 3:-85703375 MsG0380016610.01.T01:CDS
GGGCTATATGGTCACGCTCT+TGG 0.370720 3:-85704601 MsG0380016610.01.T01:CDS
TGCACCTAGATTAAGGAAAC+TGG 0.374627 3:-85703368 MsG0380016610.01.T01:CDS
TGTTCAAATCACTAGAGAAA+TGG 0.378630 3:-85704886 MsG0380016610.01.T01:CDS
CTTGATTAGACGATGGAGAT+TGG 0.392791 3:-85703449 MsG0380016610.01.T01:CDS
GCTCAGCCGTTCGATTTCTC+AGG 0.393347 3:+85704750 None:intergenic
GTTCAAATCACTAGAGAAAT+GGG 0.399384 3:-85704885 MsG0380016610.01.T01:CDS
AAGACTATCCAATATTTGAT+TGG 0.400329 3:-85704497 MsG0380016610.01.T01:CDS
TGAAGATCCAAGAGAATTTG+TGG 0.410017 3:+85703311 None:intergenic
TCTGCAGTGGCACAGCGTAT+TGG 0.420298 3:-85703511 MsG0380016610.01.T01:CDS
GGCTGCCAGCATTCCTCCAC+AGG 0.422913 3:+85704833 None:intergenic
GTGTACACAAAACCCATGTA+TGG 0.438769 3:+85703805 None:intergenic
GGGCCTTTAGATAACATTGT+AGG 0.442941 3:+85704969 None:intergenic
GATGGAGTTGGCGACGAGAC+TGG 0.447459 3:-85704641 MsG0380016610.01.T01:CDS
TGGAGATTGGAGAAGATTGA+GGG 0.448075 3:-85703436 MsG0380016610.01.T01:CDS
TCTTCCAGTTTCCTTAATCT+AGG 0.451053 3:+85703364 None:intergenic
AAACTGGAAGAGCGTCTTGA+TGG 0.452571 3:-85703352 MsG0380016610.01.T01:CDS
GGCCTTTAGATAACATTGTA+GGG 0.464982 3:+85704970 None:intergenic
TACCGAAAACAACCCATACA+TGG 0.467155 3:-85703818 MsG0380016610.01.T01:CDS
AGATCAACCACAAATTCTCT+TGG 0.467703 3:-85703318 MsG0380016610.01.T01:CDS
CTCTCACTTGCACGCGTATG+CGG 0.471157 3:-85703712 MsG0380016610.01.T01:CDS
TAAGATATCAACGTAATCAT+TGG 0.471259 3:+85703477 None:intergenic
ATCCAATATTTGATTGGAGC+TGG 0.472360 3:-85704491 MsG0380016610.01.T01:CDS
AGTGGATCCCACCGAGGCTA+TGG 0.482931 3:-85703623 MsG0380016610.01.T01:CDS
ATGGAGATTGGAGAAGATTG+AGG 0.484391 3:-85703437 MsG0380016610.01.T01:CDS
GGCTATGGCCACCATAGCCT+CGG 0.489653 3:+85703612 None:intergenic
TCTCTTTAGCCAACCTACCT+AGG 0.494048 3:+85703743 None:intergenic
TTCACAAAATGTGTTGCCAT+TGG 0.497194 3:-85704861 MsG0380016610.01.T01:CDS
AAAACCACAAGATAATCATC+TGG 0.498146 3:+85704725 None:intergenic
AACTGGAAGAGCGTCTTGAT+GGG 0.500840 3:-85703351 MsG0380016610.01.T01:CDS
TTTATCCATGTTTGGTACGT+AGG 0.501588 3:+85704671 None:intergenic
CCTGCTCACTTGATGCATGA+TGG 0.509740 3:-85703562 MsG0380016610.01.T01:CDS
GTACGTAGGCAATGCTTCCT+CGG 0.510676 3:+85704685 None:intergenic
TCGGAAGGTAGTGATGAGTC+TGG 0.523237 3:+85704797 None:intergenic
TCCCCTACAATGTTATCTAA+AGG 0.527355 3:-85704972 MsG0380016610.01.T01:CDS
GCTTCCAGATGATTATCTTG+TGG 0.527931 3:-85704729 MsG0380016610.01.T01:CDS
CCATCATGCATCAAGTGAGC+AGG 0.528607 3:+85703562 None:intergenic
TCTCACTTGCACGCGTATGC+GGG 0.529845 3:-85703711 MsG0380016610.01.T01:CDS
CCAAACATGGATAAACAAGT+TGG 0.530351 3:-85704663 MsG0380016610.01.T01:CDS
AAAACTTATCTATATCTCTC+CGG 0.537755 3:-85704545 MsG0380016610.01.T01:CDS
CATTGCCTACGTACCAAACA+TGG 0.538689 3:-85704676 MsG0380016610.01.T01:CDS
AAATGTGGCTCGCTCTTGAA+AGG 0.540932 3:+85703780 None:intergenic
TTAAACCTGTGGAGGAATGC+TGG 0.548548 3:-85704838 MsG0380016610.01.T01:CDS
CTCAGCCGTTCGATTTCTCA+GGG 0.548721 3:+85704751 None:intergenic
ATTGTAGGGGAGTCCACGCA+TGG 0.558263 3:+85704984 None:intergenic
ATAAACAAGTTGGATGGAGT+TGG 0.559959 3:-85704653 MsG0380016610.01.T01:CDS
CGCATACGCGTGCAAGTGAG+AGG 0.560592 3:+85703713 None:intergenic
GGATCCCACCGAGGCTATGG+TGG 0.562827 3:-85703620 MsG0380016610.01.T01:CDS
TGTGGAAAAGCTTCTAGAAG+TGG 0.566245 3:-85703641 MsG0380016610.01.T01:CDS
TGAGTTCATCCATCAAGTGC+AGG 0.567672 3:-85704774 MsG0380016610.01.T01:CDS
TCCTCCACAGGTTTAACCAA+TGG 0.568150 3:+85704845 None:intergenic
TATGGCCACCATAGCCTCGG+TGG 0.570103 3:+85703615 None:intergenic
CGCAACTATAAAACTTCACA+AGG 0.571071 3:+85703276 None:intergenic
ACATGGATAAACAAGTTGGA+TGG 0.572710 3:-85704659 MsG0380016610.01.T01:CDS
ATTGAGGGTTTGACAAGCGA+AGG 0.578019 3:-85703421 MsG0380016610.01.T01:CDS
TTGTTCATGGTGTAGGATGT+GGG 0.582554 3:-85703841 MsG0380016610.01.T01:intron
ATATTTGATTGGAGCTGGCG+TGG 0.585908 3:-85704486 MsG0380016610.01.T01:intron
CATGCACATATCAACTCGAC+CGG 0.587049 3:+85704526 None:intergenic
CAACATTATGCACCCATGCG+TGG 0.592760 3:-85704997 MsG0380016610.01.T01:CDS
TGGTTCAAGTCTCACACCAT+GGG 0.600203 3:-85704621 MsG0380016610.01.T01:CDS
TAGAGTTCTTGATTAGACGA+TGG 0.605110 3:-85703456 MsG0380016610.01.T01:CDS
TTTGTGTCACACGGAAACCT+AGG 0.610294 3:-85703760 MsG0380016610.01.T01:CDS
ACACGGAAACCTAGGTAGGT+TGG 0.610946 3:-85703752 MsG0380016610.01.T01:CDS
CTGGTTCAAGTCTCACACCA+TGG 0.612232 3:-85704622 MsG0380016610.01.T01:CDS
CGAGCCACATTTGTGTCACA+CGG 0.618843 3:-85703769 MsG0380016610.01.T01:CDS
ATGGCCACCATAGCCTCGGT+GGG 0.619166 3:+85703616 None:intergenic
GCCTTTAGATAACATTGTAG+GGG 0.623075 3:+85704971 None:intergenic
GAGCGTGACCATATAGCCCA+TGG 0.625365 3:+85704605 None:intergenic
ACCGAAAACAACCCATACAT+GGG 0.628237 3:-85703817 MsG0380016610.01.T01:CDS
GCCATTGGTTAAACCTGTGG+AGG 0.632502 3:-85704846 MsG0380016610.01.T01:CDS
GGTAGGTTGGCTAAAGAGAG+AGG 0.635441 3:-85703739 MsG0380016610.01.T01:CDS
TGTACACAAAACCCATGTAT+GGG 0.636404 3:+85703806 None:intergenic
GAATGCATATGTGAGGATTG+TGG 0.642224 3:-85703659 MsG0380016610.01.T01:CDS
TGTCACACGGAAACCTAGGT+AGG 0.642596 3:-85703756 MsG0380016610.01.T01:CDS
TTGTAGGGGAGTCCACGCAT+GGG 0.642906 3:+85704985 None:intergenic
GTTGCCATTGGTTAAACCTG+TGG 0.644205 3:-85704849 MsG0380016610.01.T01:CDS
CATGCACAAGAGTTCGTGTG+TGG 0.649922 3:-85703394 MsG0380016610.01.T01:CDS
GAGTCTGGCAACAAATTATG+TGG 0.650290 3:+85704812 None:intergenic
GCAGGCCCTGAGAAATCGAA+CGG 0.653102 3:-85704756 MsG0380016610.01.T01:CDS
CACTTGATGGATGAACTCAT+CGG 0.663477 3:+85704778 None:intergenic
GTCACGAGAATGCATATGTG+AGG 0.664895 3:-85703666 MsG0380016610.01.T01:CDS
ACCGCTGAAGAAAATAGACA+TGG 0.664992 3:-85704578 MsG0380016610.01.T01:CDS
CTCGTGACGCTTCTCATCAG+CGG 0.665409 3:+85703681 None:intergenic
TGATGGATGAACTCATCGGA+AGG 0.673548 3:+85704782 None:intergenic
GTTTCCGTGTGACACAAATG+TGG 0.677033 3:+85703765 None:intergenic
TGGCCATAGCCAAAATGATG+CGG 0.688297 3:-85703600 MsG0380016610.01.T01:CDS
TCTAGAAGTGGATCCCACCG+AGG 0.721401 3:-85703629 MsG0380016610.01.T01:CDS
GGTCGGTGGCTTGATCACCG+AGG 0.746193 3:-85704702 MsG0380016610.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATGAAAAATGTTATT+TGG + Chr3:85704425-85704444 None:intergenic 10.0%
!! ATAAATTAATTGATTGTTCA+TGG - Chr3:85704438-85704457 MsG0380016610.01.T01:intron 15.0%
!! TAATAAATCATATTTGTGTA+TGG + Chr3:85704118-85704137 None:intergenic 15.0%
!! AATGACAATGCATAATATAT+GGG - Chr3:85704235-85704254 MsG0380016610.01.T01:intron 20.0%
!! TAATGACAATGCATAATATA+TGG - Chr3:85704234-85704253 MsG0380016610.01.T01:intron 20.0%
! AAAACTTATCTATATCTCTC+CGG - Chr3:85703747-85703766 MsG0380016610.01.T01:CDS 25.0%
! AAGACTATCCAATATTTGAT+TGG - Chr3:85703795-85703814 MsG0380016610.01.T01:CDS 25.0%
! ATGACAATGCATAATATATG+GGG - Chr3:85704236-85704255 MsG0380016610.01.T01:intron 25.0%
! GAACGACTATTAAAAAATAG+TGG + Chr3:85704297-85704316 None:intergenic 25.0%
! TAAGATATCAACGTAATCAT+TGG + Chr3:85704818-85704837 None:intergenic 25.0%
! TAAGATGTGATAGATAGAAT+AGG + Chr3:85704365-85704384 None:intergenic 25.0%
!! TATTTCTATTTCTTTCTCCT+TGG - Chr3:85704383-85704402 MsG0380016610.01.T01:intron 25.0%
!!! ATTTGTTATTCTCGTTAGTT+TGG + Chr3:85704020-85704039 None:intergenic 25.0%
AAAACCACAAGATAATCATC+TGG + Chr3:85703570-85703589 None:intergenic 30.0%
ACATATACATGCACACAATA+TGG - Chr3:85703867-85703886 MsG0380016610.01.T01:intron 30.0%
ATGTGATAGATAGAATAGGT+TGG + Chr3:85704361-85704380 None:intergenic 30.0%
GTTCAAATCACTAGAGAAAT+GGG - Chr3:85703407-85703426 MsG0380016610.01.T01:CDS 30.0%
TAATTGATTGTTCATGGTGT+AGG - Chr3:85704444-85704463 MsG0380016610.01.T01:intron 30.0%
TGACAATGCATAATATATGG+GGG - Chr3:85704237-85704256 MsG0380016610.01.T01:intron 30.0%
TGTTCAAATCACTAGAGAAA+TGG - Chr3:85703406-85703425 MsG0380016610.01.T01:CDS 30.0%
! AGATGATTATCTTGTGGTTT+TGG - Chr3:85703569-85703588 MsG0380016610.01.T01:CDS 30.0%
! TTGAACACTTCTTTCTTTTC+AGG + Chr3:85703393-85703412 None:intergenic 30.0%
!! TTTTAGGAATGTTTTGGATG+GGG + Chr3:85703346-85703365 None:intergenic 30.0%
!!! GTTTTAGGAATGTTTTGGAT+GGG + Chr3:85703347-85703366 None:intergenic 30.0%
AGATCAACCACAAATTCTCT+TGG - Chr3:85704974-85704993 MsG0380016610.01.T01:CDS 35.0%
ATCCAATATTTGATTGGAGC+TGG - Chr3:85703801-85703820 MsG0380016610.01.T01:CDS 35.0%
CCAAACATGGATAAACAAGT+TGG - Chr3:85703629-85703648 MsG0380016610.01.T01:CDS 35.0%
GACAATGCATAATATATGGG+GGG - Chr3:85704238-85704257 MsG0380016610.01.T01:intron 35.0%
GCCTTTAGATAACATTGTAG+GGG + Chr3:85703324-85703343 None:intergenic 35.0%
GGCCTTTAGATAACATTGTA+GGG + Chr3:85703325-85703344 None:intergenic 35.0%
TAGAGTTCTTGATTAGACGA+TGG - Chr3:85704836-85704855 MsG0380016610.01.T01:CDS 35.0%
TCCCCTACAATGTTATCTAA+AGG - Chr3:85703320-85703339 MsG0380016610.01.T01:CDS 35.0%
TCTTCCAGTTTCCTTAATCT+AGG + Chr3:85704931-85704950 None:intergenic 35.0%
TGAAGATCCAAGAGAATTTG+TGG + Chr3:85704984-85705003 None:intergenic 35.0%
TGTACACAAAACCCATGTAT+GGG + Chr3:85704489-85704508 None:intergenic 35.0%
TTCACAAAATGTGTTGCCAT+TGG - Chr3:85703431-85703450 MsG0380016610.01.T01:CDS 35.0%
TTTATCCATGTTTGGTACGT+AGG + Chr3:85703624-85703643 None:intergenic 35.0%
! ACATGGATAAACAAGTTGGA+TGG - Chr3:85703633-85703652 MsG0380016610.01.T01:CDS 35.0%
! AGACATTGAGTGTGTCTTTT+GGG + Chr3:85703370-85703389 None:intergenic 35.0%
! AGTGGTGTCTTTTCTTTTTG+CGG + Chr3:85704279-85704298 None:intergenic 35.0%
! ATAAACAAGTTGGATGGAGT+TGG - Chr3:85703639-85703658 MsG0380016610.01.T01:CDS 35.0%
! CCAACTTGTTTATCCATGTT+TGG + Chr3:85703632-85703651 None:intergenic 35.0%
! CGTTAGTTTGGCAAATGTAT+TGG + Chr3:85704008-85704027 None:intergenic 35.0%
! TCCATGTCTATTTTCTTCAG+CGG + Chr3:85703718-85703737 None:intergenic 35.0%
! TCTATTTCTTTCTCCTTGGA+GGG - Chr3:85704387-85704406 MsG0380016610.01.T01:intron 35.0%
! TTCTATTTCTTTCTCCTTGG+AGG - Chr3:85704386-85704405 MsG0380016610.01.T01:intron 35.0%
!!! GATTATCTTGTGGTTTTGGT+CGG - Chr3:85703573-85703592 MsG0380016610.01.T01:CDS 35.0%
!!! GGTTTTAGGAATGTTTTGGA+TGG + Chr3:85703348-85703367 None:intergenic 35.0%
!!! TTGGGGTTTTAGGAATGTTT+TGG + Chr3:85703352-85703371 None:intergenic 35.0%
ACCGAAAACAACCCATACAT+GGG - Chr3:85704475-85704494 MsG0380016610.01.T01:intron 40.0%
ACCGCTGAAGAAAATAGACA+TGG - Chr3:85703714-85703733 MsG0380016610.01.T01:CDS 40.0%
AGCTCACGAGGACAAAATAT+AGG + Chr3:85704202-85704221 None:intergenic 40.0%
ATGGAGATTGGAGAAGATTG+AGG - Chr3:85704855-85704874 MsG0380016610.01.T01:CDS 40.0%
ATTGTTCATGGTGTAGGATG+TGG - Chr3:85704450-85704469 MsG0380016610.01.T01:intron 40.0%
CTGCAGAAAAATGATCGAAG+AGG + Chr3:85704768-85704787 None:intergenic 40.0%
CTTGATTAGACGATGGAGAT+TGG - Chr3:85704843-85704862 MsG0380016610.01.T01:CDS 40.0%
GAATGCATATGTGAGGATTG+TGG - Chr3:85704633-85704652 MsG0380016610.01.T01:CDS 40.0%
GAGTCTGGCAACAAATTATG+TGG + Chr3:85703483-85703502 None:intergenic 40.0%
GCTTCCAGATGATTATCTTG+TGG - Chr3:85703563-85703582 MsG0380016610.01.T01:CDS 40.0%
GGGCCTTTAGATAACATTGT+AGG + Chr3:85703326-85703345 None:intergenic 40.0%
GTGTACACAAAACCCATGTA+TGG + Chr3:85704490-85704509 None:intergenic 40.0%
TACCGAAAACAACCCATACA+TGG - Chr3:85704474-85704493 MsG0380016610.01.T01:intron 40.0%
TGCACCTAGATTAAGGAAAC+TGG - Chr3:85704924-85704943 MsG0380016610.01.T01:CDS 40.0%
TGGAGATTGGAGAAGATTGA+GGG - Chr3:85704856-85704875 MsG0380016610.01.T01:CDS 40.0%
TTGTTCATGGTGTAGGATGT+GGG - Chr3:85704451-85704470 MsG0380016610.01.T01:intron 40.0%
! AAAAATGATCGAAGAGGCGT+GGG + Chr3:85704762-85704781 None:intergenic 40.0%
! AATCTTGTGCCGCATCATTT+TGG + Chr3:85704704-85704723 None:intergenic 40.0%
! CACTTGATGGATGAACTCAT+CGG + Chr3:85703517-85703536 None:intergenic 40.0%
! CTATTTCTTTCTCCTTGGAG+GGG - Chr3:85704388-85704407 MsG0380016610.01.T01:intron 40.0%
! GACATTGAGTGTGTCTTTTG+GGG + Chr3:85703369-85703388 None:intergenic 40.0%
! GAGACATTGAGTGTGTCTTT+TGG + Chr3:85703371-85703390 None:intergenic 40.0%
! TCTTTTCTTTTTGCGGTGGA+CGG + Chr3:85704272-85704291 None:intergenic 40.0%
! TGTGGAAAAGCTTCTAGAAG+TGG - Chr3:85704651-85704670 MsG0380016610.01.T01:CDS 40.0%
!! ACCCATGTATGGGTTGTTTT+CGG + Chr3:85704479-85704498 None:intergenic 40.0%
!! CTTCGATCATTTTTCTGCAG+TGG - Chr3:85704768-85704787 MsG0380016610.01.T01:CDS 40.0%
!!! AGTGTGTCTTTTGGGGTTTT+AGG + Chr3:85703362-85703381 None:intergenic 40.0%
AAATGTGGCTCGCTCTTGAA+AGG + Chr3:85704515-85704534 None:intergenic 45.0%
ATATTTGATTGGAGCTGGCG+TGG - Chr3:85703806-85703825 MsG0380016610.01.T01:CDS 45.0%
ATTGAGGGTTTGACAAGCGA+AGG - Chr3:85704871-85704890 MsG0380016610.01.T01:CDS 45.0%
CATGCACATATCAACTCGAC+CGG + Chr3:85703769-85703788 None:intergenic 45.0%
CATTGCCTACGTACCAAACA+TGG - Chr3:85703616-85703635 MsG0380016610.01.T01:CDS 45.0%
CGCCAGCTCCAATCAAATAT+TGG + Chr3:85703806-85703825 None:intergenic 45.0%
GAAAAATGATCGAAGAGGCG+TGG + Chr3:85704763-85704782 None:intergenic 45.0%
GTCACGAGAATGCATATGTG+AGG - Chr3:85704626-85704645 MsG0380016610.01.T01:CDS 45.0%
GTGGACTTGCACCTAGATTA+AGG - Chr3:85704917-85704936 MsG0380016610.01.T01:CDS 45.0%
GTTTCCGTGTGACACAAATG+TGG + Chr3:85704530-85704549 None:intergenic 45.0%
TCCTCCACAGGTTTAACCAA+TGG + Chr3:85703450-85703469 None:intergenic 45.0%
TCTCTTTAGCCAACCTACCT+AGG + Chr3:85704552-85704571 None:intergenic 45.0%
TGAGTTCATCCATCAAGTGC+AGG - Chr3:85703518-85703537 MsG0380016610.01.T01:CDS 45.0%
TGCACTCGTAACACGTATGT+GGG + Chr3:85704086-85704105 None:intergenic 45.0%
TGGCCATAGCCAAAATGATG+CGG - Chr3:85704692-85704711 MsG0380016610.01.T01:CDS 45.0%
TGGTTCAAGTCTCACACCAT+GGG - Chr3:85703671-85703690 MsG0380016610.01.T01:CDS 45.0%
TTAAACCTGTGGAGGAATGC+TGG - Chr3:85703454-85703473 MsG0380016610.01.T01:CDS 45.0%
TTTGTGTCACACGGAAACCT+AGG - Chr3:85704532-85704551 MsG0380016610.01.T01:CDS 45.0%
! CTTTTCTTTTTGCGGTGGAC+GGG + Chr3:85704271-85704290 None:intergenic 45.0%
! GGTGTCTTTTCTTTTTGCGG+TGG + Chr3:85704276-85704295 None:intergenic 45.0%
! GTTGCCATTGGTTAAACCTG+TGG - Chr3:85703443-85703462 MsG0380016610.01.T01:CDS 45.0%
! TGATGGATGAACTCATCGGA+AGG + Chr3:85703513-85703532 None:intergenic 45.0%
!! AAACTGGAAGAGCGTCTTGA+TGG - Chr3:85704940-85704959 MsG0380016610.01.T01:CDS 45.0%
!! AACTGGAAGAGCGTCTTGAT+GGG - Chr3:85704941-85704960 MsG0380016610.01.T01:CDS 45.0%
!!! TATCTTGTGGTTTTGGTCGG+TGG - Chr3:85703576-85703595 MsG0380016610.01.T01:CDS 45.0%
ACACGGAAACCTAGGTAGGT+TGG - Chr3:85704540-85704559 MsG0380016610.01.T01:CDS 50.0%
CAACATTATGCACCCATGCG+TGG - Chr3:85703295-85703314 MsG0380016610.01.T01:CDS 50.0%
CACATACGTGTTACGAGTGC+AGG - Chr3:85704085-85704104 MsG0380016610.01.T01:intron 50.0%
CATGCACAAGAGTTCGTGTG+TGG - Chr3:85704898-85704917 MsG0380016610.01.T01:CDS 50.0%
CCAACTGAGTTAAGCTCACG+AGG + Chr3:85704214-85704233 None:intergenic 50.0%
CCATCATGCATCAAGTGAGC+AGG + Chr3:85704733-85704752 None:intergenic 50.0%
CCTCGTGAGCTTAACTCAGT+TGG - Chr3:85704211-85704230 MsG0380016610.01.T01:intron 50.0%
CCTGCTCACTTGATGCATGA+TGG - Chr3:85704730-85704749 MsG0380016610.01.T01:CDS 50.0%
CGAGCCACATTTGTGTCACA+CGG - Chr3:85704523-85704542 MsG0380016610.01.T01:CDS 50.0%
CTCAGCCGTTCGATTTCTCA+GGG + Chr3:85703544-85703563 None:intergenic 50.0%
CTGCACTCGTAACACGTATG+TGG + Chr3:85704087-85704106 None:intergenic 50.0%
CTGGTTCAAGTCTCACACCA+TGG - Chr3:85703670-85703689 MsG0380016610.01.T01:CDS 50.0%
GACATATGCATACCCCTCCA+AGG + Chr3:85704403-85704422 None:intergenic 50.0%
GTACGTAGGCAATGCTTCCT+CGG + Chr3:85703610-85703629 None:intergenic 50.0%
TCGGAAGGTAGTGATGAGTC+TGG + Chr3:85703498-85703517 None:intergenic 50.0%
TGTCACACGGAAACCTAGGT+AGG - Chr3:85704536-85704555 MsG0380016610.01.T01:CDS 50.0%
! GCCATTGGTTAAACCTGTGG+AGG - Chr3:85703446-85703465 MsG0380016610.01.T01:CDS 50.0%
! GGTAGGTTGGCTAAAGAGAG+AGG - Chr3:85704553-85704572 MsG0380016610.01.T01:CDS 50.0%
! GTCTCACACCATGGGCTATA+TGG - Chr3:85703679-85703698 MsG0380016610.01.T01:CDS 50.0%
!!! GTGCCGCATCATTTTGGCTA+TGG + Chr3:85704698-85704717 None:intergenic 50.0%
ATTGTAGGGGAGTCCACGCA+TGG + Chr3:85703311-85703330 None:intergenic 55.0%
CTCGTGACGCTTCTCATCAG+CGG + Chr3:85704614-85704633 None:intergenic 55.0%
CTCTCACTTGCACGCGTATG+CGG - Chr3:85704580-85704599 MsG0380016610.01.T01:CDS 55.0%
GAGCGTGACCATATAGCCCA+TGG + Chr3:85703690-85703709 None:intergenic 55.0%
GCAGGCCCTGAGAAATCGAA+CGG - Chr3:85703536-85703555 MsG0380016610.01.T01:CDS 55.0%
GCTCAGCCGTTCGATTTCTC+AGG + Chr3:85703545-85703564 None:intergenic 55.0%
GGGCTATATGGTCACGCTCT+TGG - Chr3:85703691-85703710 MsG0380016610.01.T01:CDS 55.0%
TCTAGAAGTGGATCCCACCG+AGG - Chr3:85704663-85704682 MsG0380016610.01.T01:CDS 55.0%
TCTCACTTGCACGCGTATGC+GGG - Chr3:85704581-85704600 MsG0380016610.01.T01:CDS 55.0%
TCTGCAGTGGCACAGCGTAT+TGG - Chr3:85704781-85704800 MsG0380016610.01.T01:CDS 55.0%
TTCTCAGGGCCTGCACTTGA+TGG + Chr3:85703530-85703549 None:intergenic 55.0%
TTGTAGGGGAGTCCACGCAT+GGG + Chr3:85703310-85703329 None:intergenic 55.0%
AGTGGATCCCACCGAGGCTA+TGG - Chr3:85704669-85704688 MsG0380016610.01.T01:CDS 60.0%
ATGGCCACCATAGCCTCGGT+GGG + Chr3:85704679-85704698 None:intergenic 60.0%
CGCATACGCGTGCAAGTGAG+AGG + Chr3:85704582-85704601 None:intergenic 60.0%
GATGGAGTTGGCGACGAGAC+TGG - Chr3:85703651-85703670 MsG0380016610.01.T01:CDS 60.0%
GGCTATGGCCACCATAGCCT+CGG + Chr3:85704683-85704702 None:intergenic 60.0%
TATGGCCACCATAGCCTCGG+TGG + Chr3:85704680-85704699 None:intergenic 60.0%
GGATCCCACCGAGGCTATGG+TGG - Chr3:85704672-85704691 MsG0380016610.01.T01:CDS 65.0%
GGCTGCCAGCATTCCTCCAC+AGG + Chr3:85703462-85703481 None:intergenic 65.0%
GGTCGGTGGCTTGATCACCG+AGG - Chr3:85703590-85703609 MsG0380016610.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85703291 85705023 85703291 ID=MsG0380016610.01;Name=MsG0380016610.01
Chr3 mRNA 85703291 85705023 85703291 ID=MsG0380016610.01.T01;Parent=MsG0380016610.01;Name=MsG0380016610.01.T01;_AED=0.50;_eAED=0.54;_QI=0|0|0|1|1|1|2|0|364
Chr3 exon 85704487 85705023 85704487 ID=MsG0380016610.01.T01:exon:25141;Parent=MsG0380016610.01.T01
Chr3 exon 85703291 85703848 85703291 ID=MsG0380016610.01.T01:exon:25140;Parent=MsG0380016610.01.T01
Chr3 CDS 85704487 85705023 85704487 ID=MsG0380016610.01.T01:cds;Parent=MsG0380016610.01.T01
Chr3 CDS 85703291 85703848 85703291 ID=MsG0380016610.01.T01:cds;Parent=MsG0380016610.01.T01
Gene Sequence

>MsG0380016610.01.T01

ATGGCAACATTATGCACCCATGCGTGGACTCCCCTACAATGTTATCTAAAGGCCCCATCCAAAACATTCCTAAAACCCCAAAAGACACACTCAATGTCTCCTGAAAAGAAAGAAGTGTTCAAATCACTAGAGAAATGGGTTTCACAAAATGTGTTGCCATTGGTTAAACCTGTGGAGGAATGCTGGCAGCCACATAATTTGTTGCCAGACTCATCACTACCTTCCGATGAGTTCATCCATCAAGTGCAGGCCCTGAGAAATCGAACGGCTGAGCTTCCAGATGATTATCTTGTGGTTTTGGTCGGTGGCTTGATCACCGAGGAAGCATTGCCTACGTACCAAACATGGATAAACAAGTTGGATGGAGTTGGCGACGAGACTGGTTCAAGTCTCACACCATGGGCTATATGGTCACGCTCTTGGACCGCTGAAGAAAATAGACATGGAGATTTACTCAAAACTTATCTATATCTCTCCGGTCGAGTTGATATGTGCATGATTGAGAAGACTATCCAATATTTGATTGGAGCTGGCGTGGATGTGGGTACCGAAAACAACCCATACATGGGTTTTGTGTACACATCCTTTCAAGAGCGAGCCACATTTGTGTCACACGGAAACCTAGGTAGGTTGGCTAAAGAGAGAGGTGACCTCTCACTTGCACGCGTATGCGGGACAATTGCCGCTGATGAGAAGCGTCACGAGAATGCATATGTGAGGATTGTGGAAAAGCTTCTAGAAGTGGATCCCACCGAGGCTATGGTGGCCATAGCCAAAATGATGCGGCACAAGATTACAATGCCTGCTCACTTGATGCATGATGGACAAGACCCACGCCTCTTCGATCATTTTTCTGCAGTGGCACAGCGTATTGGCGCGTACACGACCAATGATTACGTTGATATCTTAGAGTTCTTGATTAGACGATGGAGATTGGAGAAGATTGAGGGTTTGACAAGCGAAGGACAACATGCACAAGAGTTCGTGTGTGGACTTGCACCTAGATTAAGGAAACTGGAAGAGCGTCTTGATGGGAGAACAAGCAAGATCAACCACAAATTCTCTTGGATCTTCAATAAAGAGTTGTCCTTGTGA
Protein sequence

>MsG0380016610.01.T01

MATLCTHAWTPLQCYLKAPSKTFLKPQKTHSMSPEKKEVFKSLEKWVSQNVLPLVKPVEECWQPHNLLPDSSLPSDEFIHQVQALRNRTAELPDDYLVVLVGGLITEEALPTYQTWINKLDGVGDETGSSLTPWAIWSRSWTAEENRHGDLLKTYLYLSGRVDMCMIEKTIQYLIGAGVDVGTENNPYMGFVYTSFQERATFVSHGNLGRLAKERGDLSLARVCGTIAADEKRHENAYVRIVEKLLEVDPTEAMVAIAKMMRHKITMPAHLMHDGQDPRLFDHFSAVAQRIGAYTTNDYVDILEFLIRRWRLEKIEGLTSEGQHAQEFVCGLAPRLRKLEERLDGRTSKINHKFSWIFNKELSL*