AlfalfaGEDB | MsG0580027650.01

M. sativa cultivar ZhongmuNo.1 / MsG0580027650.01

KEGG: K11254
GO: GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0046982
PFAM: PF15511

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027650.01.T01	KAG2660576.1	100	103	0	0	1	103	28	130	9.14E-66	204

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027650.01.T01	P0CG89	100	103	0	0	1	103	1	103	3.05E-67	199

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027650.01.T01	A0A453MZH1	100.000	103	0	0	1	103	31	133	3.54e-66	204

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0580027650.01	0.805221	1.482100e-49	7.797300e-47
MsG0080047869.01	MsG0580027650.01	0.827874	1.229351e-54	1.201984e-51
MsG0080047944.01	MsG0580027650.01	0.811106	8.264859e-51	5.071382e-48
MsG0080047957.01	MsG0580027650.01	0.833937	4.002655e-56	4.679540e-53
MsG0080047959.01	MsG0580027650.01	0.816175	6.331415e-52	4.454277e-49
MsG0080048113.01	MsG0580027650.01	0.820637	6.174456e-53	4.912052e-50
MsG0080048404.01	MsG0580027650.01	0.827497	1.514226e-54	1.464353e-51
MsG0080048461.01	MsG0580027650.01	0.838198	3.315699e-57	4.408409e-54
MsG0080048462.01	MsG0580027650.01	0.828651	7.983709e-55	7.985077e-52
MsG0080048785.01	MsG0580027650.01	0.807060	6.078588e-50	3.352524e-47

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PPI

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Gene1	Gene2	Type
MsG0580027650.01	MsG0380014684.01	PPI
MsG0580027650.01	MsG0380015234.01	PPI
MsG0580027650.01	MsG0380014681.01	PPI
MsG0580027650.01	MsG0480020879.01	PPI
MsG0580027650.01	MsG0780037240.01	PPI
MsG0580027650.01	MsG0880045145.01	PPI
MsG0580027650.01	MsG0880047472.01	PPI
MsG0580027650.01	MsG0580027651.01	PPI
MsG0580027650.01	MsG0780041535.01	PPI
MsG0580027650.01	MsG0880047470.01	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027650.01.T01	MTR_7g029510	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_7g099610	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_5g063620	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_4g061827	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_4g061920	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_3g462400	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_3g054380	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_3g462730	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_3g462510	100.000	103	1	103	1	103	2.97e-68	199
MsG0580027650.01.T01	MTR_3g070920	100.000	103	1	103	1	103	2.97e-68	199

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027650.01.T01	AT5G59970	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT5G59690	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT5G59970	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT3G46320	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT3G45930	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT3G53730	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT2G28740	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT1G07660	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT1G07820	100.000	103	1	103	1	103	3.11e-68	199
MsG0580027650.01.T01	AT1G07820	100.000	103	1	103	1	103	3.11e-68	199

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Find 26 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACGACGAATCGCGGGTT+TGG	0.381861	5:+65188412	None:intergenic
AGACAAGGAAGGACCCTTTA+TGG	0.291085	5:-65188227	MsG0580027650.01.T01:CDS
AGGAAGAGGCAAAGGAGGAA+AGG	0.518412	5:-65188498	MsG0580027650.01.T01:CDS
AGGAGGAAAGGGTTTAGGAA+AGG	0.547494	5:-65188486	MsG0580027650.01.T01:CDS
ATCATGTCAGGAAGAGGCAA+AGG	0.584537	5:-65188506	MsG0580027650.01.T01:CDS
ATCTTGCAATCAATCATGTC+AGG	0.507815	5:-65188518	None:intergenic
ATGCACTCAAGAGACAAGGA+AGG	0.704360	5:-65188238	MsG0580027650.01.T01:CDS
ATGTCAGGAAGAGGCAAAGG+AGG	0.604597	5:-65188503	MsG0580027650.01.T01:CDS
ATTCGTCGTCTTGCTAGGCG+TGG	0.638134	5:-65188401	MsG0580027650.01.T01:CDS
CAATCAATCATGTCAGGAAG+AGG	0.559993	5:-65188512	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAACCACCAAAACCATAAA+GGG	+	Chr5:65188506-65188525	None:intergenic	35.0%
GTTCTTCGAGATAACATTCA+AGG	-	Chr5:65188277-65188296	MsG0580027650.01.T01:CDS	35.0%
TCGTAAAACAGTTACTGCTA+TGG	-	Chr5:65188447-65188466	MsG0580027650.01.T01:CDS	35.0%
GTTTATGCACTCAAGAGACA+AGG	-	Chr5:65188475-65188494	MsG0580027650.01.T01:CDS	40.0%
TTGATCTATGAAGAGACTCG+TGG	-	Chr5:65188361-65188380	MsG0580027650.01.T01:CDS	40.0%
AGACAAGGAAGGACCCTTTA+TGG	-	Chr5:65188490-65188509	MsG0580027650.01.T01:CDS	45.0%
AGGAGGAAAGGGTTTAGGAA+AGG	-	Chr5:65188231-65188250	MsG0580027650.01.T01:CDS	45.0%
ATGCACTCAAGAGACAAGGA+AGG	-	Chr5:65188479-65188498	MsG0580027650.01.T01:CDS	45.0%
GGAGGAAAGGGTTTAGGAAA+GGG	-	Chr5:65188232-65188251	MsG0580027650.01.T01:CDS	45.0%
AGGAAGAGGCAAAGGAGGAA+AGG	-	Chr5:65188219-65188238	MsG0580027650.01.T01:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	65188214	65188525	65188214	ID=MsG0580027650.01;Name=MsG0580027650.01
Chr5	mRNA	65188214	65188525	65188214	ID=MsG0580027650.01.T01;Parent=MsG0580027650.01;Name=MsG0580027650.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|103
Chr5	exon	65188214	65188525	65188214	ID=MsG0580027650.01.T01:exon:25343;Parent=MsG0580027650.01.T01
Chr5	CDS	65188214	65188525	65188214	ID=MsG0580027650.01.T01:cds;Parent=MsG0580027650.01.T01

Gene Sequence	>MsG0580027650.01.T01 ATGTCAGGAAGAGGCAAAGGAGGAAAGGGTTTAGGAAAGGGTGGAGCAAAGCGTCATCGCAAAGTTCTTCGAGATAACATTCAAGGAATAACCAAACCCGCGATTCGTCGTCTTGCTAGGCGTGGTGGTGTAAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGTGGTGTTCTCAAGATATTTCTTGAGAATGTTATTCGTGATGCTGTAACTTACACTGAACATGCTCGTCGTAAAACAGTTACTGCTATGGATGTTGTTTATGCACTCAAGAGACAAGGAAGGACCCTTTATGGTTTTGGTGGTTAG
Protein sequence	>MsG0580027650.01.T01 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*