AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016656.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016656.01.T01 MTR_3g092640 96.934 424 13 0 1 424 1 424 0.0 855
MsG0380016656.01.T01 MTR_1g078030 53.976 415 156 5 10 424 15 394 1.52e-161 461
MsG0380016656.01.T01 MTR_5g007030 44.282 411 213 7 17 417 30 434 7.97e-115 343
MsG0380016656.01.T01 MTR_5g007030 51.562 320 149 3 101 417 8 324 5.35e-110 327
MsG0380016656.01.T01 MTR_4g005140 31.773 299 172 10 115 396 68 351 1.48e-37 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016656.01.T01 AT1G64720 58.373 418 124 8 8 424 16 384 1.35e-169 481
MsG0380016656.01.T01 AT5G54170 53.477 417 169 8 20 416 16 427 4.86e-146 423
MsG0380016656.01.T01 AT4G14500 46.798 406 207 3 17 417 30 431 1.19e-126 373
MsG0380016656.01.T01 AT3G23080 45.567 406 202 5 17 417 26 417 5.69e-117 348
MsG0380016656.01.T01 AT3G23080 46.000 400 197 5 23 417 1 386 1.83e-116 345
MsG0380016656.01.T01 AT3G23080 46.000 400 197 5 23 417 1 386 1.83e-116 345
MsG0380016656.01.T01 AT4G14500 43.750 240 128 3 17 249 30 269 7.80e-60 197
MsG0380016656.01.T01 AT3G13062 32.993 294 180 8 119 402 84 370 1.39e-40 149
MsG0380016656.01.T01 AT3G13062 32.993 294 180 8 119 402 84 370 1.83e-40 150
MsG0380016656.01.T01 AT1G55960 32.770 296 177 8 116 396 80 368 4.13e-39 145
MsG0380016656.01.T01 AT3G13062 32.119 302 180 9 119 402 84 378 7.98e-38 142
MsG0380016656.01.T01 AT1G55960 30.034 293 158 9 119 396 83 343 1.07e-27 113

Find 167 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTTGGATTTGCTAATT+TGG 0.096001 3:-86178941 MsG0380016656.01.T01:CDS
CCTTGTGGAACTATCAAATT+TGG 0.183642 3:+86180841 None:intergenic
CAATGGAAAACCCTGCAATT+TGG 0.229635 3:-86181141 MsG0380016656.01.T01:CDS
ATCAATCTCTTGAAGGGATT+TGG 0.233935 3:-86178891 MsG0380016656.01.T01:three_prime_UTR
AAATAGTACTGCTTCGATAT+TGG 0.237005 3:+86180178 None:intergenic
CAATAAAGAGATCAATAAAA+AGG 0.238323 3:-86180885 MsG0380016656.01.T01:CDS
TCTTATCCATTGCACTTTCA+TGG 0.240540 3:+86180038 None:intergenic
ACATTATCGGGCGAAGAATA+TGG 0.249260 3:-86179872 MsG0380016656.01.T01:CDS
TTTGGTGTTGCTAAAAGATT+TGG 0.250029 3:-86178955 MsG0380016656.01.T01:CDS
AATGGAAAACCCTGCAATTT+GGG 0.252814 3:-86181140 MsG0380016656.01.T01:CDS
AAAGTCTCGGCTTGTTGATT+TGG 0.257188 3:-86178526 MsG0380016656.01.T01:three_prime_UTR
ACTCTCTCGTTCCGCTTTCA+TGG 0.263425 3:-86179175 MsG0380016656.01.T01:CDS
AGATGGTGAGGGATTTGTTC+TGG 0.264325 3:-86180137 MsG0380016656.01.T01:CDS
TAAACCAAAACCACTCTAAT+TGG 0.265319 3:-86181524 MsG0380016656.01.T01:five_prime_UTR
AGTTTATTTCACCCTCTTAA+AGG 0.266705 3:-86181186 MsG0380016656.01.T01:five_prime_UTR
CCCTCTTGAAGCCATTGTTT+TGG 0.269675 3:-86178656 MsG0380016656.01.T01:three_prime_UTR
ATGATCAATTCCGACCTAAA+TGG 0.274607 3:-86180113 MsG0380016656.01.T01:CDS
TGAACCAATTAGAGTGGTTT+TGG 0.278685 3:+86181520 None:intergenic
AGATTTGGATTTGCTAATTT+GGG 0.278788 3:-86178940 MsG0380016656.01.T01:CDS
GAGTTATTGTTGGTTGGTTA+TGG 0.284197 3:-86181066 MsG0380016656.01.T01:CDS
AATAGTACTGCTTCGATATT+GGG 0.295359 3:+86180179 None:intergenic
GTGACCAAGGCTGTTATATT+TGG 0.297239 3:-86178973 MsG0380016656.01.T01:CDS
ATTTGAGGAGAAGAATAATT+AGG 0.297481 3:+86181315 None:intergenic
CTTTCTCATTCCCCTAGATT+TGG 0.311325 3:+86178545 None:intergenic
ACCGAAATGGATTGTTTCAT+TGG 0.320605 3:-86181041 MsG0380016656.01.T01:CDS
TTATTGATGCACAAAGAATC+AGG 0.325112 3:+86180902 None:intergenic
TATCAAGAAGCAAAAGCTTC+TGG 0.334002 3:-86179204 MsG0380016656.01.T01:CDS
AATATAGGAGAATCTGAAAT+TGG 0.334138 3:+86180995 None:intergenic
GCTCTTCCATCATGAAGAAA+TGG 0.335228 3:-86179310 MsG0380016656.01.T01:CDS
ACAAGCATATCATCCCATTT+AGG 0.342967 3:+86180099 None:intergenic
GCCAATGAAACAATCCATTT+CGG 0.348500 3:+86181040 None:intergenic
GCATTAAAACCCCAAATTGC+AGG 0.348790 3:+86181130 None:intergenic
AAGTCTCGGCTTGTTGATTT+GGG 0.349338 3:-86178525 MsG0380016656.01.T01:three_prime_UTR
CTTGGGAAATTGCAAAGCTT+GGG 0.351239 3:-86179281 MsG0380016656.01.T01:CDS
CTTGCTTGTAGTCTAGATAA+AGG 0.357837 3:-86179000 MsG0380016656.01.T01:CDS
TATGAAGAAGAAATGTGAAT+AGG 0.357876 3:+86181489 None:intergenic
TTCTTGATAAGCGCGTAAAC+CGG 0.360902 3:+86179218 None:intergenic
TTCTCTGTCTTTACAGAAGA+AGG 0.369154 3:+86179896 None:intergenic
CCTTGGGAAATTGCAAAGCT+TGG 0.380072 3:-86179282 MsG0380016656.01.T01:CDS
ATGCACAAAGAATCAGGGTT+TGG 0.389553 3:+86180908 None:intergenic
TTCGGTACGGTCATGCCCTT+TGG 0.391532 3:+86179051 None:intergenic
ATGAAGAAGAAATGTGAATA+GGG 0.392048 3:+86181490 None:intergenic
GTCAGAAGTAATCGCACTTT+CGG 0.393685 3:+86179080 None:intergenic
GTTTATTTCACCCTCTTAAA+GGG 0.396971 3:-86181185 MsG0380016656.01.T01:five_prime_UTR
TTTGTGTTGGAGAATTTGTT+AGG 0.407127 3:+86181561 None:intergenic
GTTGGTTATGGAAACCGAAA+TGG 0.409722 3:-86181054 MsG0380016656.01.T01:CDS
GTTGAATCAAAGAGAGATAA+TGG 0.410181 3:-86179357 MsG0380016656.01.T01:CDS
AAGGAGCTGTGGAATATTTG+AGG 0.414935 3:+86181300 None:intergenic
AATTTCAATGGCGAAAATAT+AGG 0.421810 3:+86180980 None:intergenic
AAGTTTCAAAACCCTTTAAG+AGG 0.424066 3:+86181174 None:intergenic
CGCATTACATTGGTTGATGT+TGG 0.425042 3:-86178834 MsG0380016656.01.T01:three_prime_UTR
CTCTTCCATCATGAAGAAAT+GGG 0.425947 3:-86179309 MsG0380016656.01.T01:CDS
ATGAAGAAATGGGAATTCCT+TGG 0.434331 3:-86179299 MsG0380016656.01.T01:CDS
AGAAAGAAGATAAGAAGAAG+AGG 0.435078 3:+86181436 None:intergenic
AACAAATCCCTCACCATCTC+AGG 0.435785 3:+86180141 None:intergenic
CATTATCGGGCGAAGAATAT+GGG 0.439592 3:-86179871 MsG0380016656.01.T01:CDS
AAAGACAGAGAATACATTAT+CGG 0.440471 3:-86179885 MsG0380016656.01.T01:CDS
TGATCAATTCCGACCTAAAT+GGG 0.441777 3:-86180112 MsG0380016656.01.T01:CDS
TCTTAGGAGTTATTGTTGGT+TGG 0.448664 3:-86181072 MsG0380016656.01.T01:CDS
TCCGGTGAAGATACTTCTAA+TGG 0.456041 3:-86180433 MsG0380016656.01.T01:CDS
AGAAAGATGGAGGTCTTCCT+TGG 0.462865 3:-86180366 MsG0380016656.01.T01:CDS
AAACATTCACATGGTAAAGT+TGG 0.463882 3:-86178351 MsG0380016656.01.T01:three_prime_UTR
GATGGTGAGGGATTTGTTCT+GGG 0.463908 3:-86180136 MsG0380016656.01.T01:CDS
TGAAGAAATGGGAATTCCTT+GGG 0.464197 3:-86179298 MsG0380016656.01.T01:CDS
GTTAGGTGTTGTGTTTGTGT+TGG 0.472614 3:+86181548 None:intergenic
TTGGTTCTCTACGCCATGCC+TGG 0.479368 3:+86180305 None:intergenic
CCACCAATGACTAGCATCTT+CGG 0.484556 3:+86179033 None:intergenic
GCAAAGCTTGGGGTGCGAAA+AGG 0.484622 3:-86179270 MsG0380016656.01.T01:CDS
GTTGATGTTGGATCAAGATC+GGG 0.486228 3:-86178822 MsG0380016656.01.T01:three_prime_UTR
CTATGCAGTTCTCAGAAATC+CGG 0.487042 3:-86180451 MsG0380016656.01.T01:intron
GAATTCCCATTTCTTCATGA+TGG 0.489686 3:+86179304 None:intergenic
AGATTCCCCAAATAACTCAT+TGG 0.490673 3:-86181617 None:intergenic
CATTCAAATGCGCATTACAT+TGG 0.491198 3:-86178844 MsG0380016656.01.T01:three_prime_UTR
GGTTGATGTTGGATCAAGAT+CGG 0.498351 3:-86178823 MsG0380016656.01.T01:three_prime_UTR
GGCGAAGAATATGGGAATGC+GGG 0.499090 3:-86179863 MsG0380016656.01.T01:CDS
AAAGAAGAATAGAATTTCAA+TGG 0.502415 3:+86180968 None:intergenic
AGGTGGAATCAATCTCTTGA+AGG 0.504620 3:-86178898 MsG0380016656.01.T01:three_prime_UTR
AAGGGGTATGTGGTTGAAGA+AGG 0.505565 3:+86181281 None:intergenic
GAGTTTGAAATTTAGACCAT+TGG 0.506045 3:-86178750 MsG0380016656.01.T01:three_prime_UTR
AAGACAGAGAATACATTATC+GGG 0.507509 3:-86179884 MsG0380016656.01.T01:CDS
TCTAGTTGGTGCATTCGAGC+AGG 0.509639 3:-86179651 MsG0380016656.01.T01:intron
AAGAGGGTGAAATAAACTAA+AGG 0.510097 3:+86181191 None:intergenic
AGAGGGTGAAATAAACTAAA+GGG 0.510899 3:+86181192 None:intergenic
AATGCGTTCTGAGGAAACTA+AGG 0.512423 3:+86181246 None:intergenic
GAAGAAATGTGAATAGGGAT+AGG 0.514206 3:+86181495 None:intergenic
TCCAAAACAATGGCTTCAAG+AGG 0.515874 3:+86178655 None:intergenic
TCTCTGTCTTTACAGAAGAA+GGG 0.516792 3:+86179897 None:intergenic
GCGAAAAGGCATGTGGGGAA+TGG 0.521022 3:-86179256 MsG0380016656.01.T01:CDS
TCTTCCTTGGATACAGATGA+TGG 0.524577 3:-86180353 MsG0380016656.01.T01:CDS
TCCATCGGATCCTCTGATGA+TGG 0.527053 3:-86179114 MsG0380016656.01.T01:CDS
CCAAGCTTTGCAATTTCCCA+AGG 0.529721 3:+86179282 None:intergenic
TCTTGATAAGCGCGTAAACC+GGG 0.530261 3:+86179219 None:intergenic
CTCTGTCTTTACAGAAGAAG+GGG 0.532991 3:+86179898 None:intergenic
GTAAAAGATAGTAGAACTAA+AGG 0.533449 3:-86178918 MsG0380016656.01.T01:exon
CATTAAAACCCCAAATTGCA+GGG 0.535660 3:+86181131 None:intergenic
TTGGGGTGCGAAAAGGCATG+TGG 0.540671 3:-86179263 MsG0380016656.01.T01:CDS
GAAAGAAGATAAGAAGAAGA+GGG 0.540918 3:+86181437 None:intergenic
TACCTTTGTGACGCAATAGT+AGG 0.544173 3:+86179836 None:intergenic
ACCATTAGAAGTATCTTCAC+CGG 0.545080 3:+86180432 None:intergenic
TGGGGTGCGAAAAGGCATGT+GGG 0.547657 3:-86179262 MsG0380016656.01.T01:CDS
AAGCTTGTTGAAGAGAAAGA+TGG 0.548875 3:-86180379 MsG0380016656.01.T01:CDS
GGTGGAATCAATCTCTTGAA+GGG 0.550268 3:-86178897 MsG0380016656.01.T01:three_prime_UTR
AAAGATAGTAGAACTAAAGG+TGG 0.551418 3:-86178915 MsG0380016656.01.T01:exon
ATGGTACAAAAGATTGAGCC+CGG 0.553382 3:-86179237 MsG0380016656.01.T01:CDS
AACACCAAATATAACAGCCT+TGG 0.555762 3:+86178969 None:intergenic
GAAAGTGCAATGGATAAGAA+AGG 0.560742 3:-86180034 MsG0380016656.01.T01:intron
GTACCGAAGATGCTAGTCAT+TGG 0.562943 3:-86179036 MsG0380016656.01.T01:CDS
TTGGGAAATTGCAAAGCTTG+GGG 0.564589 3:-86179280 MsG0380016656.01.T01:CDS
TTGCACTTTCATGGTTCCAG+TGG 0.567434 3:+86180047 None:intergenic
TATTGATGCACAAAGAATCA+GGG 0.567482 3:+86180903 None:intergenic
ACTTTCATGGTTCCAGTGGT+AGG 0.569928 3:+86180051 None:intergenic
TTAGAAGAGTGTCCTACCAC+TGG 0.570104 3:-86180063 MsG0380016656.01.T01:CDS
AGTTTCAAAACCCTTTAAGA+GGG 0.570957 3:+86181175 None:intergenic
CACAGAGTTTATAAATTCTG+TGG 0.571669 3:+86178438 None:intergenic
TTTATTACTTCAAAATGTGG+AGG 0.572509 3:-86178603 MsG0380016656.01.T01:three_prime_UTR
TAGATGTGTATTACTCTAGT+TGG 0.573803 3:-86179665 MsG0380016656.01.T01:CDS
GCTTGTTGATTTGGGAGAGA+GGG 0.574652 3:-86178517 MsG0380016656.01.T01:three_prime_UTR
ATGCAACTCCTGAGATGGTG+AGG 0.574823 3:-86180149 MsG0380016656.01.T01:CDS
TTATCCATCATCTGTATCCA+AGG 0.580476 3:+86180349 None:intergenic
TAATACACATCTACACGTCT+AGG 0.582676 3:+86179675 None:intergenic
GGCTTGTTGATTTGGGAGAG+AGG 0.583955 3:-86178518 MsG0380016656.01.T01:three_prime_UTR
CTAGGGGAATGAGAAAGTCT+CGG 0.584830 3:-86178539 MsG0380016656.01.T01:three_prime_UTR
CCGAAGATGCTAGTCATTGG+TGG 0.584906 3:-86179033 MsG0380016656.01.T01:CDS
CCTGGGTACTTGCAATCCAT+CGG 0.585116 3:-86179129 MsG0380016656.01.T01:CDS
TACTTCTGACGACAAACCAA+AGG 0.589022 3:-86179067 MsG0380016656.01.T01:CDS
ATGAAAGCGGAACGAGAGAG+TGG 0.589867 3:+86179177 None:intergenic
TTTGGTGGGTGAAGAAGAAG+AGG 0.592927 3:+86180859 None:intergenic
CGACTATGAGTTACCAGGCA+TGG 0.594580 3:-86180318 MsG0380016656.01.T01:CDS
TTGTTATAGAATGCGTTCTG+AGG 0.596541 3:+86181237 None:intergenic
TGAATTCTTAGACCATGAGT+AGG 0.598691 3:-86178467 MsG0380016656.01.T01:three_prime_UTR
TGAAGATGCAACTCCTGAGA+TGG 0.599312 3:-86180154 MsG0380016656.01.T01:CDS
ATGGAAAACCCTGCAATTTG+GGG 0.599898 3:-86181139 MsG0380016656.01.T01:CDS
ACTTCTGACGACAAACCAAA+GGG 0.601183 3:-86179066 MsG0380016656.01.T01:CDS
TACTGCTTCGATATTGGGGA+GGG 0.606720 3:+86180184 None:intergenic
ACTGTTCGATCAAGATCCAA+TGG 0.611534 3:+86178734 None:intergenic
TCCATCATCAGAGGATCCGA+TGG 0.612428 3:+86179113 None:intergenic
TGTGGAACTATCAAATTTGG+TGG 0.612711 3:+86180844 None:intergenic
TTGTAGTCTAGATAAAGGAT+TGG 0.612824 3:-86178995 MsG0380016656.01.T01:CDS
AATGACTAGCATCTTCGGTA+CGG 0.620562 3:+86179038 None:intergenic
CTGGAACCATGAAAGTGCAA+TGG 0.622256 3:-86180044 MsG0380016656.01.T01:CDS
TAGGAATGAACCAATTAGAG+TGG 0.623041 3:+86181514 None:intergenic
GGGCGAAGAATATGGGAATG+CGG 0.625266 3:-86179864 MsG0380016656.01.T01:CDS
ATAGTACTGCTTCGATATTG+GGG 0.625450 3:+86180180 None:intergenic
CCAAAACAATGGCTTCAAGA+GGG 0.625971 3:+86178656 None:intergenic
TGTGGTTGAAGAAGGAGCTG+TGG 0.626852 3:+86181289 None:intergenic
GAAGAATATGGGAATGCGGG+AGG 0.627874 3:-86179860 MsG0380016656.01.T01:CDS
GGCATGGCGTAGAGAACCAA+AGG 0.628323 3:-86180302 MsG0380016656.01.T01:intron
GGGGTGCGAAAAGGCATGTG+GGG 0.628732 3:-86179261 MsG0380016656.01.T01:CDS
GCATATCATCCCATTTAGGT+CGG 0.629636 3:+86180103 None:intergenic
TGCAACTCCTGAGATGGTGA+GGG 0.632971 3:-86180148 MsG0380016656.01.T01:CDS
CCGATGGATTGCAAGTACCC+AGG 0.634493 3:+86179129 None:intergenic
ATTGACACTGGCCATGAAAG+CGG 0.634554 3:+86179164 None:intergenic
ACGTGGATCATCCAAAACAA+TGG 0.639277 3:+86178645 None:intergenic
TTGTAATGATCCATCATCAG+AGG 0.643905 3:+86179104 None:intergenic
CATGCCTGGTAACTCATAGT+CGG 0.646187 3:+86180319 None:intergenic
CCAAATTTGATAGTTCCACA+AGG 0.652382 3:-86180841 MsG0380016656.01.T01:intron
GTCCTACTATTGCGTCACAA+AGG 0.655181 3:-86179838 MsG0380016656.01.T01:intron
GTACTGCTTCGATATTGGGG+AGG 0.655617 3:+86180183 None:intergenic
GGAAACTATAATGGATAACG+TGG 0.662024 3:+86178628 None:intergenic
TACTCCGACTATGAGTTACC+AGG 0.668614 3:-86180323 MsG0380016656.01.T01:CDS
CTTGTTGAAGAGAAAGATGG+AGG 0.668763 3:-86180376 MsG0380016656.01.T01:CDS
GATGTTGGATCAAGATCGGG+CGG 0.673003 3:-86178819 MsG0380016656.01.T01:three_prime_UTR
AGATAAAGGATTGGTGACCA+AGG 0.675087 3:-86178986 MsG0380016656.01.T01:CDS
CAGAATTTATAAACTCTGTG+TGG 0.677998 3:-86178435 MsG0380016656.01.T01:three_prime_UTR
ATGTATTGTAAACATTCACA+TGG 0.678770 3:-86178360 MsG0380016656.01.T01:three_prime_UTR
GTGGAACTATCAAATTTGGT+GGG 0.683465 3:+86180845 None:intergenic
GTAATAGAAGAATTAACACA+AGG 0.716696 3:+86180941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGAGATCAATAAAAA+GGG - Chr3:86179013-86179032 MsG0380016656.01.T01:CDS 15.0%
!! AATTAAAAAGATGACAAAAT+TGG + Chr3:86178556-86178575 None:intergenic 15.0%
!! ATTATAAAAAAACCAAATCT+AGG - Chr3:86181340-86181359 MsG0380016656.01.T01:five_prime_UTR 15.0%
!! TAATAAAAAGGAAACTATAA+TGG + Chr3:86181281-86181300 None:intergenic 15.0%
!! TTATAAAAAAACCAAATCTA+GGG - Chr3:86181341-86181360 MsG0380016656.01.T01:five_prime_UTR 15.0%
!!! ACAAAAAAAATCAAATTTTG+AGG - Chr3:86178679-86178698 MsG0380016656.01.T01:three_prime_UTR 15.0%
!!! CAAAAAAAATCAAATTTTGA+GGG - Chr3:86178680-86178699 MsG0380016656.01.T01:three_prime_UTR 15.0%
!! AAAGAAGAATAGAATTTCAA+TGG + Chr3:86178932-86178951 None:intergenic 20.0%
!! ACTAAGGAGAAAAAATTAAA+AGG + Chr3:86178638-86178657 None:intergenic 20.0%
!! ATAAAGCTAATTTGGATATT+TGG - Chr3:86179295-86179314 MsG0380016656.01.T01:CDS 20.0%
!! CAATAAAGAGATCAATAAAA+AGG - Chr3:86179012-86179031 MsG0380016656.01.T01:CDS 20.0%
!! CAATTGAATTAATCCATAAT+TGG - Chr3:86179202-86179221 MsG0380016656.01.T01:CDS 20.0%
!! CTAAGGAGAAAAAATTAAAA+GGG + Chr3:86178637-86178656 None:intergenic 20.0%
!! TAAGGAGAAAAAATTAAAAG+GGG + Chr3:86178636-86178655 None:intergenic 20.0%
!! TAATTTGAAAACTCAATAGA+AGG + Chr3:86179661-86179680 None:intergenic 20.0%
!! TATAAAAAAACCAAATCTAG+GGG - Chr3:86181342-86181361 MsG0380016656.01.T01:five_prime_UTR 20.0%
!! TTGGATAAGTTTGAAAATTT+GGG - Chr3:86179328-86179347 MsG0380016656.01.T01:CDS 20.0%
!! TTTGGATAAGTTTGAAAATT+TGG - Chr3:86179327-86179346 MsG0380016656.01.T01:CDS 20.0%
!!! ATAGAATACTTTTATTGCTT+CGG + Chr3:86181500-86181519 None:intergenic 20.0%
!!! CACATTTTGAAGTAATAAAA+AGG + Chr3:86181293-86181312 None:intergenic 20.0%
!!! CTTTTTATTACTTCAAAATG+TGG - Chr3:86181291-86181310 MsG0380016656.01.T01:five_prime_UTR 20.0%
!!! TTTTCAAACTTATCCAAAAT+TGG + Chr3:86179325-86179344 None:intergenic 20.0%
!!! TTTTGTATTGTTGATTCAAT+AGG - Chr3:86179686-86179705 MsG0380016656.01.T01:CDS 20.0%
! AAAGACAGAGAATACATTAT+CGG - Chr3:86180012-86180031 MsG0380016656.01.T01:intron 25.0%
! AAGAAAAACACTAACAACAT+AGG + Chr3:86178809-86178828 None:intergenic 25.0%
! AAGAGAAAGACAAAAAGATA+TGG + Chr3:86178513-86178532 None:intergenic 25.0%
! AATTGGGAATTAAAGATAGT+AGG - Chr3:86179272-86179291 MsG0380016656.01.T01:CDS 25.0%
! AATTTCAATGGCGAAAATAT+AGG + Chr3:86178920-86178939 None:intergenic 25.0%
! AGAGAAAGACAAAAAGATAT+GGG + Chr3:86178512-86178531 None:intergenic 25.0%
! ATAGTAGGATAAAGCTAATT+TGG - Chr3:86179287-86179306 MsG0380016656.01.T01:CDS 25.0%
! ATGAAGAAGAAATGTGAATA+GGG + Chr3:86178410-86178429 None:intergenic 25.0%
! ATGTATTGTAAACATTCACA+TGG - Chr3:86181537-86181556 MsG0380016656.01.T01:five_prime_UTR 25.0%
! ATTAATGGAAAATTACCTTG+TGG + Chr3:86179074-86179093 None:intergenic 25.0%
! ATTTGAGGAGAAGAATAATT+AGG + Chr3:86178585-86178604 None:intergenic 25.0%
! CAAAATTGGTGAAAAAAAAG+AGG + Chr3:86178542-86178561 None:intergenic 25.0%
! GCATTGTTTGAATGTTTAAT+TGG - Chr3:86179385-86179404 MsG0380016656.01.T01:intron 25.0%
! GTAAAAGATAGTAGAACTAA+AGG - Chr3:86180979-86180998 MsG0380016656.01.T01:CDS 25.0%
! GTAATAGAAGAATTAACACA+AGG + Chr3:86178959-86178978 None:intergenic 25.0%
! TATGAAGAAGAAATGTGAAT+AGG + Chr3:86178411-86178430 None:intergenic 25.0%
! TCAATACAAAAATAAGTCCT+GGG - Chr3:86180751-86180770 MsG0380016656.01.T01:intron 25.0%
! TTTATTACTTCAAAATGTGG+AGG - Chr3:86181294-86181313 MsG0380016656.01.T01:five_prime_UTR 25.0%
! TTTGAATGTTTAATTGGCTA+TGG - Chr3:86179391-86179410 MsG0380016656.01.T01:intron 25.0%
!! AAAAAATTAAAAGGGGTATG+TGG + Chr3:86178629-86178648 None:intergenic 25.0%
!! AATATAGGAGAATCTGAAAT+TGG + Chr3:86178905-86178924 None:intergenic 25.0%
!! ATGTTGTTAGTGTTTTTCTT+AGG - Chr3:86178809-86178828 MsG0380016656.01.T01:three_prime_UTR 25.0%
!! GATATTTGGTTAACCAATTT+TGG - Chr3:86179309-86179328 MsG0380016656.01.T01:CDS 25.0%
!! TTCATGTTTTTCTGTTATTG+AGG - Chr3:86179117-86179136 MsG0380016656.01.T01:CDS 25.0%
!! TTTTCTGTTATTGAGGAATT+AGG - Chr3:86179124-86179143 MsG0380016656.01.T01:CDS 25.0%
!! TTTTTCTTAGGAGTTATTGT+TGG - Chr3:86178821-86178840 MsG0380016656.01.T01:three_prime_UTR 25.0%
!!! AAGATTTGGATTTGCTAATT+TGG - Chr3:86180956-86180975 MsG0380016656.01.T01:CDS 25.0%
!!! ACTTATTTTTGTATTGACAC+TGG + Chr3:86180748-86180767 None:intergenic 25.0%
!!! AGATTTGGATTTGCTAATTT+GGG - Chr3:86180957-86180976 MsG0380016656.01.T01:CDS 25.0%
!!! GAAACTTTTTCTTGTTACAA+TGG - Chr3:86178739-86178758 MsG0380016656.01.T01:three_prime_UTR 25.0%
AAACATTCACATGGTAAAGT+TGG - Chr3:86181546-86181565 MsG0380016656.01.T01:five_prime_UTR 30.0%
AAAGATAGTAGAACTAAAGG+TGG - Chr3:86180982-86181001 MsG0380016656.01.T01:CDS 30.0%
AAATAGTACTGCTTCGATAT+TGG + Chr3:86179722-86179741 None:intergenic 30.0%
AAGACAGAGAATACATTATC+GGG - Chr3:86180013-86180032 MsG0380016656.01.T01:intron 30.0%
AAGAGGGTGAAATAAACTAA+AGG + Chr3:86178709-86178728 None:intergenic 30.0%
AAGTTTCAAAACCCTTTAAG+AGG + Chr3:86178726-86178745 None:intergenic 30.0%
AATAGTACTGCTTCGATATT+GGG + Chr3:86179721-86179740 None:intergenic 30.0%
AGAAAGAAGATAAGAAGAAG+AGG + Chr3:86178464-86178483 None:intergenic 30.0%
AGAGGGTGAAATAAACTAAA+GGG + Chr3:86178708-86178727 None:intergenic 30.0%
AGTTTATTTCACCCTCTTAA+AGG - Chr3:86178711-86178730 MsG0380016656.01.T01:three_prime_UTR 30.0%
CACAGAGTTTATAAATTCTG+TGG + Chr3:86181462-86181481 None:intergenic 30.0%
CAGAATTTATAAACTCTGTG+TGG - Chr3:86181462-86181481 MsG0380016656.01.T01:five_prime_UTR 30.0%
CCTTAACTACTAGTGAAATT+GGG - Chr3:86179256-86179275 MsG0380016656.01.T01:CDS 30.0%
GAAAGAAGATAAGAAGAAGA+GGG + Chr3:86178463-86178482 None:intergenic 30.0%
GAGAAAGACAAAAAGATATG+GGG + Chr3:86178511-86178530 None:intergenic 30.0%
GTCAATACAAAAATAAGTCC+TGG - Chr3:86180750-86180769 MsG0380016656.01.T01:intron 30.0%
GTTGAATCAAAGAGAGATAA+TGG - Chr3:86180540-86180559 MsG0380016656.01.T01:intron 30.0%
GTTTATTTCACCCTCTTAAA+GGG - Chr3:86178712-86178731 MsG0380016656.01.T01:three_prime_UTR 30.0%
TAAACCAAAACCACTCTAAT+TGG - Chr3:86178373-86178392 MsG0380016656.01.T01:three_prime_UTR 30.0%
TAGATGTGTATTACTCTAGT+TGG - Chr3:86180232-86180251 MsG0380016656.01.T01:intron 30.0%
TATTGATGCACAAAGAATCA+GGG + Chr3:86178997-86179016 None:intergenic 30.0%
TCAAATCAAATCAAGCGAAA+AGG + Chr3:86179896-86179915 None:intergenic 30.0%
TCCTTAACTACTAGTGAAAT+TGG - Chr3:86179255-86179274 MsG0380016656.01.T01:CDS 30.0%
TTATTGATGCACAAAGAATC+AGG + Chr3:86178998-86179017 None:intergenic 30.0%
TTGTAGTCTAGATAAAGGAT+TGG - Chr3:86180902-86180921 MsG0380016656.01.T01:CDS 30.0%
! AATCCATAATTGGTCTATGA+TGG - Chr3:86179212-86179231 MsG0380016656.01.T01:CDS 30.0%
! AGTTTCAAAACCCTTTAAGA+GGG + Chr3:86178725-86178744 None:intergenic 30.0%
! GAGTTTGAAATTTAGACCAT+TGG - Chr3:86181147-86181166 MsG0380016656.01.T01:exon 30.0%
! GGAATTAGGTAGATGATTTT+TGG - Chr3:86179138-86179157 MsG0380016656.01.T01:CDS 30.0%
! TTGAAGTCATTGATTGAAGA+TGG - Chr3:86180104-86180123 MsG0380016656.01.T01:CDS 30.0%
! TTTGTGTTGGAGAATTTGTT+AGG + Chr3:86178339-86178358 None:intergenic 30.0%
!! ATTTGCTTTTCTTCCTTTCA+GGG - Chr3:86180165-86180184 MsG0380016656.01.T01:CDS 30.0%
!! GTATTGTTGATTCAATAGGA+CGG - Chr3:86179690-86179709 MsG0380016656.01.T01:CDS 30.0%
!! TATTTGCTTTTCTTCCTTTC+AGG - Chr3:86180164-86180183 MsG0380016656.01.T01:CDS 30.0%
!! TTTGGTGTTGCTAAAAGATT+TGG - Chr3:86180942-86180961 MsG0380016656.01.T01:CDS 30.0%
!!! AGAAGAGGGTTTTGTTTTTA+TGG + Chr3:86178449-86178468 None:intergenic 30.0%
!!! GAAGAGGGTTTTGTTTTTAT+GGG + Chr3:86178448-86178467 None:intergenic 30.0%
!!! GGTTTTGTTTTTATGGGTTT+GGG + Chr3:86178442-86178461 None:intergenic 30.0%
!!! TGTTTTGATTAAGACGTGAA+GGG + Chr3:86178488-86178507 None:intergenic 30.0%
AACACCAAATATAACAGCCT+TGG + Chr3:86180931-86180950 None:intergenic 35.0%
AATGGAAAACCCTGCAATTT+GGG - Chr3:86178757-86178776 MsG0380016656.01.T01:three_prime_UTR 35.0%
ACAAGCATATCATCCCATTT+AGG + Chr3:86179801-86179820 None:intergenic 35.0%
AGCCTATATAACATGTCAAG+CGG + Chr3:86180474-86180493 None:intergenic 35.0%
ATAGTACTGCTTCGATATTG+GGG + Chr3:86179720-86179739 None:intergenic 35.0%
ATCAATCTCTTGAAGGGATT+TGG - Chr3:86181006-86181025 MsG0380016656.01.T01:CDS 35.0%
ATGAAGAAATGGGAATTCCT+TGG - Chr3:86180598-86180617 MsG0380016656.01.T01:intron 35.0%
ATGATCAATTCCGACCTAAA+TGG - Chr3:86179784-86179803 MsG0380016656.01.T01:intron 35.0%
CATTAAAACCCCAAATTGCA+GGG + Chr3:86178769-86178788 None:intergenic 35.0%
CATTCAAATGCGCATTACAT+TGG - Chr3:86181053-86181072 MsG0380016656.01.T01:CDS 35.0%
CCCAATTTCACTAGTAGTTA+AGG + Chr3:86179259-86179278 None:intergenic 35.0%
CCTTGTGGAACTATCAAATT+TGG + Chr3:86179059-86179078 None:intergenic 35.0%
CTCTTCCATCATGAAGAAAT+GGG - Chr3:86180588-86180607 MsG0380016656.01.T01:intron 35.0%
CTTCTATCGTAACATACCTT+TGG + Chr3:86179614-86179633 None:intergenic 35.0%
CTTGCTTGTAGTCTAGATAA+AGG - Chr3:86180897-86180916 MsG0380016656.01.T01:CDS 35.0%
GAAGAAATGTGAATAGGGAT+AGG + Chr3:86178405-86178424 None:intergenic 35.0%
GAATTCCCATTTCTTCATGA+TGG + Chr3:86180596-86180615 None:intergenic 35.0%
GCCAATGAAACAATCCATTT+CGG + Chr3:86178860-86178879 None:intergenic 35.0%
GTGGAACTATCAAATTTGGT+GGG + Chr3:86179055-86179074 None:intergenic 35.0%
TAATACACATCTACACGTCT+AGG + Chr3:86180225-86180244 None:intergenic 35.0%
TAGGAATGAACCAATTAGAG+TGG + Chr3:86178386-86178405 None:intergenic 35.0%
TATCAAGAAGCAAAAGCTTC+TGG - Chr3:86180693-86180712 MsG0380016656.01.T01:intron 35.0%
TCTCTGTCTTTACAGAAGAA+GGG + Chr3:86180003-86180022 None:intergenic 35.0%
TCTTAGGAGTTATTGTTGGT+TGG - Chr3:86178825-86178844 MsG0380016656.01.T01:three_prime_UTR 35.0%
TCTTATCCATTGCACTTTCA+TGG + Chr3:86179862-86179881 None:intergenic 35.0%
TGAAGAAATGGGAATTCCTT+GGG - Chr3:86180599-86180618 MsG0380016656.01.T01:intron 35.0%
TGAATTCTTAGACCATGAGT+AGG - Chr3:86181430-86181449 MsG0380016656.01.T01:five_prime_UTR 35.0%
TGATCAATTCCGACCTAAAT+GGG - Chr3:86179785-86179804 MsG0380016656.01.T01:intron 35.0%
TGGTGAAAAAAAAGAGGAAG+AGG + Chr3:86178536-86178555 None:intergenic 35.0%
TGTGGAACTATCAAATTTGG+TGG + Chr3:86179056-86179075 None:intergenic 35.0%
TTATCCATCATCTGTATCCA+AGG + Chr3:86179551-86179570 None:intergenic 35.0%
TTCTCTGTCTTTACAGAAGA+AGG + Chr3:86180004-86180023 None:intergenic 35.0%
TTGTAATGATCCATCATCAG+AGG + Chr3:86180796-86180815 None:intergenic 35.0%
TTGTTATAGAATGCGTTCTG+AGG + Chr3:86178663-86178682 None:intergenic 35.0%
! CAAAGGTATGTTACGATAGA+AGG - Chr3:86179612-86179631 MsG0380016656.01.T01:intron 35.0%
! CCAAATTTGATAGTTCCACA+AGG - Chr3:86179056-86179075 MsG0380016656.01.T01:CDS 35.0%
! GAAAGTGCAATGGATAAGAA+AGG - Chr3:86179863-86179882 MsG0380016656.01.T01:CDS 35.0%
! GAGTTATTGTTGGTTGGTTA+TGG - Chr3:86178831-86178850 MsG0380016656.01.T01:three_prime_UTR 35.0%
! GTCTAGGTTTTTCTTGTCTT+GGG + Chr3:86180209-86180228 None:intergenic 35.0%
! TGAACCAATTAGAGTGGTTT+TGG + Chr3:86178380-86178399 None:intergenic 35.0%
! TTTTCTTGTCTTGGGATTGA+AGG + Chr3:86180201-86180220 None:intergenic 35.0%
!! AAGCTTGTTGAAGAGAAAGA+TGG - Chr3:86179518-86179537 MsG0380016656.01.T01:intron 35.0%
!! ACCATTAGAAGTATCTTCAC+CGG + Chr3:86179468-86179487 None:intergenic 35.0%
!! ACCGAAATGGATTGTTTCAT+TGG - Chr3:86178856-86178875 MsG0380016656.01.T01:three_prime_UTR 35.0%
!! GAAAATTTGGGTTGAATGTG+TGG - Chr3:86179340-86179359 MsG0380016656.01.T01:CDS 35.0%
!! GGAAACTATAATGGATAACG+TGG + Chr3:86181272-86181291 None:intergenic 35.0%
!! TTTGCTTTTCTTCCTTTCAG+GGG - Chr3:86180166-86180185 MsG0380016656.01.T01:CDS 35.0%
!!! AAATGTGGAGGCTCTTTTTT+TGG - Chr3:86181306-86181325 MsG0380016656.01.T01:five_prime_UTR 35.0%
!!! GAGTGGTTTTGGTTTATGTT+AGG + Chr3:86178369-86178388 None:intergenic 35.0%
!!! GGGTTTTGTTTTTATGGGTT+TGG + Chr3:86178443-86178462 None:intergenic 35.0%
!!! GTGTTTTGATTAAGACGTGA+AGG + Chr3:86178489-86178508 None:intergenic 35.0%
AAGGAGCTGTGGAATATTTG+AGG + Chr3:86178600-86178619 None:intergenic 40.0%
AATGACTAGCATCTTCGGTA+CGG + Chr3:86180862-86180881 None:intergenic 40.0%
ACATTATCGGGCGAAGAATA+TGG - Chr3:86180025-86180044 MsG0380016656.01.T01:intron 40.0%
ACGTGGATCATCCAAAACAA+TGG + Chr3:86181255-86181274 None:intergenic 40.0%
ACTGTTCGATCAAGATCCAA+TGG + Chr3:86181166-86181185 None:intergenic 40.0%
ACTTCTGACGACAAACCAAA+GGG - Chr3:86180831-86180850 MsG0380016656.01.T01:intron 40.0%
AGGTGGAATCAATCTCTTGA+AGG - Chr3:86180999-86181018 MsG0380016656.01.T01:CDS 40.0%
ATGCACAAAGAATCAGGGTT+TGG + Chr3:86178992-86179011 None:intergenic 40.0%
ATGGAAAACCCTGCAATTTG+GGG - Chr3:86178758-86178777 MsG0380016656.01.T01:three_prime_UTR 40.0%
ATGGTACAAAAGATTGAGCC+CGG - Chr3:86180660-86180679 MsG0380016656.01.T01:intron 40.0%
CAATGGAAAACCCTGCAATT+TGG - Chr3:86178756-86178775 MsG0380016656.01.T01:three_prime_UTR 40.0%
CACCGCTTGACATGTTATAT+AGG - Chr3:86180469-86180488 MsG0380016656.01.T01:intron 40.0%
CATTATCGGGCGAAGAATAT+GGG - Chr3:86180026-86180045 MsG0380016656.01.T01:intron 40.0%
CCAAAACAATGGCTTCAAGA+GGG + Chr3:86181244-86181263 None:intergenic 40.0%
CTATGCAGTTCTCAGAAATC+CGG - Chr3:86179446-86179465 MsG0380016656.01.T01:intron 40.0%
CTCTGTCTTTACAGAAGAAG+GGG + Chr3:86180002-86180021 None:intergenic 40.0%
CTTGGGAAATTGCAAAGCTT+GGG - Chr3:86180616-86180635 MsG0380016656.01.T01:intron 40.0%
CTTGTTGAAGAGAAAGATGG+AGG - Chr3:86179521-86179540 MsG0380016656.01.T01:intron 40.0%
CTTTCTCATTCCCCTAGATT+TGG + Chr3:86181355-86181374 None:intergenic 40.0%
GCACCATCATAGACCAATTA+TGG + Chr3:86179218-86179237 None:intergenic 40.0%
GCATATCATCCCATTTAGGT+CGG + Chr3:86179797-86179816 None:intergenic 40.0%
GCATTAAAACCCCAAATTGC+AGG + Chr3:86178770-86178789 None:intergenic 40.0%
GCTCTTCCATCATGAAGAAA+TGG - Chr3:86180587-86180606 MsG0380016656.01.T01:intron 40.0%
GGTGGAATCAATCTCTTGAA+GGG - Chr3:86181000-86181019 MsG0380016656.01.T01:CDS 40.0%
GTCAGAAGTAATCGCACTTT+CGG + Chr3:86180820-86180839 None:intergenic 40.0%
GTGACCAAGGCTGTTATATT+TGG - Chr3:86180924-86180943 MsG0380016656.01.T01:CDS 40.0%
GTTGATGTTGGATCAAGATC+GGG - Chr3:86181075-86181094 MsG0380016656.01.T01:CDS 40.0%
GTTGGTTATGGAAACCGAAA+TGG - Chr3:86178843-86178862 MsG0380016656.01.T01:three_prime_UTR 40.0%
TACCTTTGTGACGCAATAGT+AGG + Chr3:86180064-86180083 None:intergenic 40.0%
TACTTCTGACGACAAACCAA+AGG - Chr3:86180830-86180849 MsG0380016656.01.T01:intron 40.0%
TCCAAAACAATGGCTTCAAG+AGG + Chr3:86181245-86181264 None:intergenic 40.0%
TCCGGTGAAGATACTTCTAA+TGG - Chr3:86179464-86179483 MsG0380016656.01.T01:intron 40.0%
TCTTCCTTGGATACAGATGA+TGG - Chr3:86179544-86179563 MsG0380016656.01.T01:intron 40.0%
TTCTTGATAAGCGCGTAAAC+CGG + Chr3:86180682-86180701 None:intergenic 40.0%
TTGGGAAATTGCAAAGCTTG+GGG - Chr3:86180617-86180636 MsG0380016656.01.T01:intron 40.0%
! AGATAAAGGATTGGTGACCA+AGG - Chr3:86180911-86180930 MsG0380016656.01.T01:CDS 40.0%
! CGCATTACATTGGTTGATGT+TGG - Chr3:86181063-86181082 MsG0380016656.01.T01:CDS 40.0%
! CGTCTAGGTTTTTCTTGTCT+TGG + Chr3:86180210-86180229 None:intergenic 40.0%
! GGTTGATGTTGGATCAAGAT+CGG - Chr3:86181074-86181093 MsG0380016656.01.T01:CDS 40.0%
! GTTAGGTGTTGTGTTTGTGT+TGG + Chr3:86178352-86178371 None:intergenic 40.0%
!! AAAGTCTCGGCTTGTTGATT+TGG - Chr3:86181371-86181390 MsG0380016656.01.T01:five_prime_UTR 40.0%
!! AAGTCTCGGCTTGTTGATTT+GGG - Chr3:86181372-86181391 MsG0380016656.01.T01:five_prime_UTR 40.0%
!! AATGCGTTCTGAGGAAACTA+AGG + Chr3:86178654-86178673 None:intergenic 40.0%
!! TTGCTTTTCTTCCTTTCAGG+GGG - Chr3:86180167-86180186 MsG0380016656.01.T01:CDS 40.0%
AACAAATCCCTCACCATCTC+AGG + Chr3:86179759-86179778 None:intergenic 45.0%
ACTTTCATGGTTCCAGTGGT+AGG + Chr3:86179849-86179868 None:intergenic 45.0%
AGAAAGATGGAGGTCTTCCT+TGG - Chr3:86179531-86179550 MsG0380016656.01.T01:intron 45.0%
ATTGACACTGGCCATGAAAG+CGG + Chr3:86180736-86180755 None:intergenic 45.0%
CATGCCTGGTAACTCATAGT+CGG + Chr3:86179581-86179600 None:intergenic 45.0%
CCAAGCTTTGCAATTTCCCA+AGG + Chr3:86180618-86180637 None:intergenic 45.0%
CCACCAATGACTAGCATCTT+CGG + Chr3:86180867-86180886 None:intergenic 45.0%
CCTTGGGAAATTGCAAAGCT+TGG - Chr3:86180615-86180634 MsG0380016656.01.T01:intron 45.0%
CTAGGGGAATGAGAAAGTCT+CGG - Chr3:86181358-86181377 MsG0380016656.01.T01:five_prime_UTR 45.0%
GTACCGAAGATGCTAGTCAT+TGG - Chr3:86180861-86180880 MsG0380016656.01.T01:CDS 45.0%
GTCCTACTATTGCGTCACAA+AGG - Chr3:86180059-86180078 MsG0380016656.01.T01:CDS 45.0%
TACTCCGACTATGAGTTACC+AGG - Chr3:86179574-86179593 MsG0380016656.01.T01:intron 45.0%
TACTGCTTCGATATTGGGGA+GGG + Chr3:86179716-86179735 None:intergenic 45.0%
TCTTGATAAGCGCGTAAACC+GGG + Chr3:86180681-86180700 None:intergenic 45.0%
TGAAGATGCAACTCCTGAGA+TGG - Chr3:86179743-86179762 MsG0380016656.01.T01:intron 45.0%
TTGCACTTTCATGGTTCCAG+TGG + Chr3:86179853-86179872 None:intergenic 45.0%
! AAGGGGTATGTGGTTGAAGA+AGG + Chr3:86178619-86178638 None:intergenic 45.0%
! AGATGGTGAGGGATTTGTTC+TGG - Chr3:86179760-86179779 MsG0380016656.01.T01:intron 45.0%
! CCCTCTTGAAGCCATTGTTT+TGG - Chr3:86181241-86181260 MsG0380016656.01.T01:five_prime_UTR 45.0%
! CTGGAACCATGAAAGTGCAA+TGG - Chr3:86179853-86179872 MsG0380016656.01.T01:CDS 45.0%
! GATGGTGAGGGATTTGTTCT+GGG - Chr3:86179761-86179780 MsG0380016656.01.T01:intron 45.0%
! TTTGGTGGGTGAAGAAGAAG+AGG + Chr3:86179041-86179060 None:intergenic 45.0%
!! GCTTGTTGATTTGGGAGAGA+GGG - Chr3:86181380-86181399 MsG0380016656.01.T01:five_prime_UTR 45.0%
!! TTAGAAGAGTGTCCTACCAC+TGG - Chr3:86179834-86179853 MsG0380016656.01.T01:intron 45.0%
!!! CTGTGGTTTTGACCTACTCA+TGG + Chr3:86181445-86181464 None:intergenic 45.0%
!! TAACTTATTTATTTAATTAA+TGG + Chr3:86179089-86179108 None:intergenic 5.0%
ACTCTCTCGTTCCGCTTTCA+TGG - Chr3:86180722-86180741 MsG0380016656.01.T01:intron 50.0%
AGGACAATCTACCCCCTGAA+AGG + Chr3:86180181-86180200 None:intergenic 50.0%
ATGAAAGCGGAACGAGAGAG+TGG + Chr3:86180723-86180742 None:intergenic 50.0%
ATGCAACTCCTGAGATGGTG+AGG - Chr3:86179748-86179767 MsG0380016656.01.T01:intron 50.0%
CCGAAGATGCTAGTCATTGG+TGG - Chr3:86180864-86180883 MsG0380016656.01.T01:CDS 50.0%
CCTGGGTACTTGCAATCCAT+CGG - Chr3:86180768-86180787 MsG0380016656.01.T01:intron 50.0%
CGACTATGAGTTACCAGGCA+TGG - Chr3:86179579-86179598 MsG0380016656.01.T01:intron 50.0%
GAAGAATATGGGAATGCGGG+AGG - Chr3:86180037-86180056 MsG0380016656.01.T01:CDS 50.0%
GATGTTGGATCAAGATCGGG+CGG - Chr3:86181078-86181097 MsG0380016656.01.T01:CDS 50.0%
GGCGAAGAATATGGGAATGC+GGG - Chr3:86180034-86180053 MsG0380016656.01.T01:intron 50.0%
GGGCGAAGAATATGGGAATG+CGG - Chr3:86180033-86180052 MsG0380016656.01.T01:intron 50.0%
GTACTGCTTCGATATTGGGG+AGG + Chr3:86179717-86179736 None:intergenic 50.0%
TCCATCATCAGAGGATCCGA+TGG + Chr3:86180787-86180806 None:intergenic 50.0%
TCCATCGGATCCTCTGATGA+TGG - Chr3:86180783-86180802 MsG0380016656.01.T01:intron 50.0%
TGCAACTCCTGAGATGGTGA+GGG - Chr3:86179749-86179768 MsG0380016656.01.T01:intron 50.0%
TGTGGTTGAAGAAGGAGCTG+TGG + Chr3:86178611-86178630 None:intergenic 50.0%
! TCTAGTTGGTGCATTCGAGC+AGG - Chr3:86180246-86180265 MsG0380016656.01.T01:intron 50.0%
!! GGCTTGTTGATTTGGGAGAG+AGG - Chr3:86181379-86181398 MsG0380016656.01.T01:five_prime_UTR 50.0%
GCAAAGCTTGGGGTGCGAAA+AGG - Chr3:86180627-86180646 MsG0380016656.01.T01:intron 55.0%
GGCATGGCGTAGAGAACCAA+AGG - Chr3:86179595-86179614 MsG0380016656.01.T01:intron 55.0%
TTCGGTACGGTCATGCCCTT+TGG + Chr3:86180849-86180868 None:intergenic 55.0%
! GCGAAAAGGCATGTGGGGAA+TGG - Chr3:86180641-86180660 MsG0380016656.01.T01:intron 55.0%
! TGGGGTGCGAAAAGGCATGT+GGG - Chr3:86180635-86180654 MsG0380016656.01.T01:intron 55.0%
! TTGGGGTGCGAAAAGGCATG+TGG - Chr3:86180634-86180653 MsG0380016656.01.T01:intron 55.0%
! TTGGTTCTCTACGCCATGCC+TGG + Chr3:86179595-86179614 None:intergenic 55.0%
!! CCGATGGATTGCAAGTACCC+AGG + Chr3:86180771-86180790 None:intergenic 55.0%
! GGGGTGCGAAAAGGCATGTG+GGG - Chr3:86180636-86180655 MsG0380016656.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 86178293 86181626 86178293 ID=MsG0380016656.01;Name=MsG0380016656.01
Chr3 mRNA 86178293 86181626 86178293 ID=MsG0380016656.01.T01;Parent=MsG0380016656.01;Name=MsG0380016656.01.T01;_AED=0.17;_eAED=0.17;_QI=465|1|1|1|1|1|6|637|424
Chr3 exon 86178293 86179378 86178293 ID=MsG0380016656.01.T01:exon:22120;Parent=MsG0380016656.01.T01
Chr3 exon 86179652 86179733 86179652 ID=MsG0380016656.01.T01:exon:22119;Parent=MsG0380016656.01.T01
Chr3 exon 86179839 86179922 86179839 ID=MsG0380016656.01.T01:exon:22118;Parent=MsG0380016656.01.T01
Chr3 exon 86180035 86180211 86180035 ID=MsG0380016656.01.T01:exon:22117;Parent=MsG0380016656.01.T01
Chr3 exon 86180303 86180465 86180303 ID=MsG0380016656.01.T01:exon:22116;Parent=MsG0380016656.01.T01
Chr3 exon 86180842 86181626 86180842 ID=MsG0380016656.01.T01:exon:22115;Parent=MsG0380016656.01.T01
Chr3 five_prime_UTR 86181162 86181626 86181162 ID=MsG0380016656.01.T01:five_prime_utr;Parent=MsG0380016656.01.T01
Chr3 CDS 86180842 86181161 86180842 ID=MsG0380016656.01.T01:cds;Parent=MsG0380016656.01.T01
Chr3 CDS 86180303 86180465 86180303 ID=MsG0380016656.01.T01:cds;Parent=MsG0380016656.01.T01
Chr3 CDS 86180035 86180211 86180035 ID=MsG0380016656.01.T01:cds;Parent=MsG0380016656.01.T01
Chr3 CDS 86179839 86179922 86179839 ID=MsG0380016656.01.T01:cds;Parent=MsG0380016656.01.T01
Chr3 CDS 86179652 86179733 86179652 ID=MsG0380016656.01.T01:cds;Parent=MsG0380016656.01.T01
Chr3 CDS 86178930 86179378 86178930 ID=MsG0380016656.01.T01:cds;Parent=MsG0380016656.01.T01
Chr3 three_prime_UTR 86178293 86178929 86178293 ID=MsG0380016656.01.T01:three_prime_utr;Parent=MsG0380016656.01.T01
Gene Sequence

>MsG0380016656.01.T01

ATGGAAAACCCTGCAATTTGGGGTTTTAATGCAACGATGTTTATGAGTCCTATGTTGTTAGTGTTTTTCTTAGGAGTTATTGTTGGTTGGTTATGGAAACCGAAATGGATTGTTTCATTGGCTAAGTCTTTTGATTTAGCTTCACCAATTTCAGATTCTCCTATATTTTCGCCATTGAAATTCTATTCTTCTTTGTCTCCTTGTGTTAATTCTTCTATTACAATGCAAAATCCAAACCCTGATTCTTTGTGCATCAATAAAGAGATCAATAAAAAGGGTTCCTCTTCTTCTTCACCCACCAAATTTGATAGTTCCACAAGTTCTCAGAAATCCGGTGAAGATACTTCTAATGGTGTTACAATCGATGATTTACATCATTTATACAAGCTTGTTGAAGAGAAAGATGGAGGTCTTCCTTGGATACAGATGATGGATAAATCTACTCCGACTATGAGTTACCAGGCATGGCGTAGAGAACCAAAGGACGGCCCTCCCCAATATCGAAGCAGTACTATTTTTGAAGATGCAACTCCTGAGATGGTGAGGGATTTGTTCTGGGATGATCAATTCCGACCTAAATGGGATGATATGCTTGTGAACTCAACAACATTAGAAGAGTGTCCTACCACTGGAACCATGAAAGTGCAATGGATAAGAAAGTTCCCCTTCTTCTGTAAAGACAGAGAATACATTATCGGGCGAAGAATATGGGAATGCGGGAGGTCCTACTATTGCGTCACAAAGGGGGTAGATTGTCCTTCAATCCCAAGACAAGAAAAACCTAGACGTGTAGATGTGTATTACTCTAGTTGGTGCATTCGAGCAGTTGAATCAAAGAGAGATAATGGTCAACTGACTGCATGTGAAGTTTTGCTCTTCCATCATGAAGAAATGGGAATTCCTTGGGAAATTGCAAAGCTTGGGGTGCGAAAAGGCATGTGGGGAATGGTACAAAAGATTGAGCCCGGTTTACGCGCTTATCAAGAAGCAAAAGCTTCTGGAGCTCCACTCTCTCGTTCCGCTTTCATGGCCAGTGTCAATACAAAAATAAGTCCTGGGTACTTGCAATCCATCGGATCCTCTGATGATGGATCATTACAAACCGAAAGTGCGATTACTTCTGACGACAAACCAAAGGGCATGACCGTACCGAAGATGCTAGTCATTGGTGGTGCTGTTGCTCTTGCTTGTAGTCTAGATAAAGGATTGGTGACCAAGGCTGTTATATTTGGTGTTGCTAAAAGATTTGGATTTGCTAATTTGGGTAAAAGATAG
Protein sequence

>MsG0380016656.01.T01

MENPAIWGFNATMFMSPMLLVFFLGVIVGWLWKPKWIVSLAKSFDLASPISDSPIFSPLKFYSSLSPCVNSSITMQNPNPDSLCINKEINKKGSSSSSPTKFDSSTSSQKSGEDTSNGVTIDDLHHLYKLVEEKDGGLPWIQMMDKSTPTMSYQAWRREPKDGPPQYRSSTIFEDATPEMVRDLFWDDQFRPKWDDMLVNSTTLEECPTTGTMKVQWIRKFPFFCKDREYIIGRRIWECGRSYYCVTKGVDCPSIPRQEKPRRVDVYYSSWCIRAVESKRDNGQLTACEVLLFHHEEMGIPWEIAKLGVRKGMWGMVQKIEPGLRAYQEAKASGAPLSRSAFMASVNTKISPGYLQSIGSSDDGSLQTESAITSDDKPKGMTVPKMLVIGGAVALACSLDKGLVTKAVIFGVAKRFGFANLGKR*