Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016838.01.T01 | XP_024635108.1 | 93.252 | 163 | 7 | 2 | 1 | 162 | 128 | 287 | 1.37E-99 | 298 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016838.01.T01 | Q2R352 | 52.027 | 148 | 69 | 2 | 3 | 148 | 65 | 212 | 1.68E-46 | 154 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016838.01.T01 | A0A396IZR4 | 93.252 | 163 | 7 | 2 | 1 | 162 | 128 | 287 | 6.57e-100 | 298 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0380016838.01 | MsG0480018185.01 | 0.803280 | 3.759234e-49 | 1.881381e-46 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0180004424.01 | MsG0380016838.01 | PPI |
MsG0380016838.01 | MsG0480018692.01 | PPI |
MsG0680030382.01 | MsG0380016838.01 | PPI |
MsG0380016838.01 | MsG0680030379.01 | PPI |
MsG0680030380.01 | MsG0380016838.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016838.01.T01 | MTR_3g096330 | 93.252 | 163 | 7 | 2 | 1 | 162 | 616 | 775 | 4.72e-97 | 296 |
MsG0380016838.01.T01 | MTR_8g007300 | 63.830 | 141 | 50 | 1 | 2 | 141 | 66 | 206 | 7.39e-58 | 180 |
MsG0380016838.01.T01 | MTR_1g060120 | 47.826 | 115 | 60 | 0 | 3 | 117 | 72 | 186 | 2.05e-34 | 120 |
MsG0380016838.01.T01 | MTR_1g085500 | 48.148 | 108 | 56 | 0 | 13 | 120 | 73 | 180 | 5.38e-31 | 111 |
MsG0380016838.01.T01 | MTR_1g112200 | 47.748 | 111 | 58 | 0 | 7 | 117 | 62 | 172 | 1.11e-29 | 108 |
MsG0380016838.01.T01 | MTR_1g085140 | 41.830 | 153 | 72 | 3 | 3 | 138 | 63 | 215 | 1.55e-29 | 107 |
MsG0380016838.01.T01 | MTR_7g111240 | 38.562 | 153 | 77 | 3 | 3 | 138 | 59 | 211 | 1.83e-28 | 105 |
MsG0380016838.01.T01 | MTR_7g111240 | 38.562 | 153 | 77 | 3 | 3 | 138 | 56 | 208 | 1.90e-28 | 104 |
MsG0380016838.01.T01 | MTR_2g030855 | 40.132 | 152 | 77 | 3 | 8 | 152 | 64 | 208 | 1.52e-27 | 102 |
MsG0380016838.01.T01 | MTR_2g031270 | 40.132 | 152 | 77 | 3 | 8 | 152 | 65 | 209 | 2.44e-27 | 102 |
MsG0380016838.01.T01 | MTR_1g023770 | 43.609 | 133 | 68 | 3 | 8 | 133 | 61 | 193 | 3.34e-27 | 101 |
MsG0380016838.01.T01 | MTR_2g041570 | 42.735 | 117 | 60 | 1 | 12 | 121 | 59 | 175 | 2.64e-26 | 99.4 |
MsG0380016838.01.T01 | MTR_2g041580 | 42.735 | 117 | 60 | 1 | 12 | 121 | 59 | 175 | 3.24e-26 | 99.0 |
MsG0380016838.01.T01 | MTR_5g036570 | 46.552 | 116 | 60 | 2 | 3 | 116 | 66 | 181 | 4.11e-26 | 99.0 |
MsG0380016838.01.T01 | MTR_2g041550 | 42.478 | 113 | 58 | 1 | 12 | 117 | 59 | 171 | 2.10e-25 | 97.1 |
MsG0380016838.01.T01 | MTR_8g020630 | 41.593 | 113 | 64 | 2 | 5 | 116 | 58 | 169 | 4.18e-24 | 93.6 |
MsG0380016838.01.T01 | MTR_2g030895 | 38.994 | 159 | 81 | 5 | 3 | 152 | 23 | 174 | 4.60e-24 | 92.8 |
MsG0380016838.01.T01 | MTR_1g079490 | 41.860 | 129 | 67 | 2 | 13 | 133 | 73 | 201 | 7.69e-24 | 93.2 |
MsG0380016838.01.T01 | MTR_2g036120 | 44.000 | 100 | 55 | 1 | 16 | 115 | 70 | 168 | 1.00e-23 | 92.8 |
MsG0380016838.01.T01 | MTR_8g020650 | 41.071 | 112 | 64 | 2 | 6 | 116 | 59 | 169 | 1.35e-23 | 92.4 |
MsG0380016838.01.T01 | MTR_6g005340 | 41.606 | 137 | 72 | 3 | 5 | 133 | 63 | 199 | 1.38e-23 | 92.4 |
MsG0380016838.01.T01 | MTR_8g020590 | 41.000 | 100 | 59 | 0 | 22 | 121 | 74 | 173 | 2.27e-23 | 91.7 |
MsG0380016838.01.T01 | MTR_6g005360 | 42.188 | 128 | 67 | 2 | 13 | 133 | 72 | 199 | 2.50e-23 | 92.0 |
MsG0380016838.01.T01 | MTR_2g030865 | 39.865 | 148 | 74 | 4 | 13 | 152 | 34 | 174 | 2.59e-23 | 90.9 |
MsG0380016838.01.T01 | MTR_6g005310 | 42.188 | 128 | 67 | 2 | 13 | 133 | 72 | 199 | 2.81e-23 | 91.7 |
MsG0380016838.01.T01 | MTR_6g005330 | 42.188 | 128 | 67 | 2 | 13 | 133 | 72 | 199 | 3.48e-23 | 91.7 |
MsG0380016838.01.T01 | MTR_4g017040 | 45.370 | 108 | 56 | 1 | 13 | 117 | 72 | 179 | 3.87e-23 | 91.3 |
MsG0380016838.01.T01 | MTR_4g017050 | 42.975 | 121 | 65 | 2 | 1 | 117 | 59 | 179 | 4.12e-23 | 91.3 |
MsG0380016838.01.T01 | MTR_5g046410 | 45.370 | 108 | 56 | 1 | 13 | 117 | 72 | 179 | 4.30e-23 | 91.3 |
MsG0380016838.01.T01 | MTR_5g046430 | 45.370 | 108 | 56 | 1 | 13 | 117 | 72 | 179 | 4.30e-23 | 91.3 |
MsG0380016838.01.T01 | MTR_4g017030 | 45.370 | 108 | 56 | 1 | 13 | 117 | 72 | 179 | 4.30e-23 | 91.3 |
MsG0380016838.01.T01 | MTR_8g020770 | 47.000 | 100 | 52 | 1 | 15 | 114 | 72 | 170 | 4.50e-23 | 90.9 |
MsG0380016838.01.T01 | MTR_8g020610 | 40.196 | 102 | 61 | 0 | 15 | 116 | 66 | 167 | 5.80e-23 | 90.5 |
MsG0380016838.01.T01 | MTR_2g044040 | 44.000 | 100 | 55 | 1 | 16 | 115 | 70 | 168 | 1.01e-22 | 90.1 |
MsG0380016838.01.T01 | MTR_2g019250 | 45.370 | 108 | 56 | 1 | 13 | 117 | 72 | 179 | 1.31e-22 | 90.1 |
MsG0380016838.01.T01 | MTR_2g045100 | 42.000 | 100 | 57 | 1 | 16 | 115 | 70 | 168 | 1.91e-22 | 89.4 |
MsG0380016838.01.T01 | MTR_7g011340 | 44.898 | 98 | 53 | 1 | 18 | 115 | 72 | 168 | 2.69e-22 | 89.0 |
MsG0380016838.01.T01 | MTR_0284s0010 | 43.434 | 99 | 55 | 1 | 17 | 115 | 71 | 168 | 5.77e-22 | 88.2 |
MsG0380016838.01.T01 | MTR_8g020670 | 40.179 | 112 | 65 | 2 | 6 | 116 | 59 | 169 | 7.94e-22 | 87.8 |
MsG0380016838.01.T01 | MTR_3g019710 | 43.689 | 103 | 57 | 1 | 20 | 122 | 74 | 175 | 1.18e-21 | 87.4 |
MsG0380016838.01.T01 | MTR_8g020763 | 38.053 | 113 | 69 | 1 | 9 | 121 | 44 | 155 | 1.47e-21 | 86.7 |
MsG0380016838.01.T01 | MTR_6g005380 | 42.593 | 108 | 59 | 1 | 13 | 117 | 72 | 179 | 1.62e-21 | 87.0 |
MsG0380016838.01.T01 | MTR_4g010340 | 44.545 | 110 | 52 | 4 | 13 | 115 | 57 | 164 | 1.80e-21 | 86.7 |
MsG0380016838.01.T01 | MTR_3g019650 | 42.718 | 103 | 58 | 1 | 20 | 122 | 73 | 174 | 2.90e-21 | 86.3 |
MsG0380016838.01.T01 | MTR_3g019680 | 42.718 | 103 | 58 | 1 | 20 | 122 | 73 | 174 | 3.15e-21 | 86.3 |
MsG0380016838.01.T01 | MTR_6g005350 | 46.154 | 104 | 54 | 1 | 13 | 114 | 72 | 175 | 6.47e-21 | 85.5 |
MsG0380016838.01.T01 | MTR_3g073170 | 40.777 | 103 | 60 | 1 | 19 | 121 | 74 | 175 | 2.31e-20 | 84.0 |
MsG0380016838.01.T01 | MTR_8g020760 | 41.818 | 110 | 63 | 1 | 8 | 117 | 64 | 172 | 3.83e-20 | 83.2 |
MsG0380016838.01.T01 | MTR_5g031460 | 39.815 | 108 | 62 | 2 | 16 | 121 | 68 | 174 | 6.72e-20 | 82.8 |
MsG0380016838.01.T01 | MTR_4g052770 | 39.806 | 103 | 61 | 1 | 22 | 123 | 74 | 176 | 5.63e-19 | 80.1 |
MsG0380016838.01.T01 | MTR_4g052780 | 39.806 | 103 | 61 | 1 | 22 | 123 | 74 | 176 | 1.03e-18 | 79.3 |
MsG0380016838.01.T01 | MTR_2g031300 | 49.367 | 79 | 38 | 1 | 13 | 89 | 34 | 112 | 1.44e-18 | 77.8 |
MsG0380016838.01.T01 | MTR_2g019780 | 37.864 | 103 | 63 | 1 | 20 | 122 | 77 | 178 | 2.26e-18 | 78.6 |
MsG0380016838.01.T01 | MTR_2g086640 | 38.596 | 114 | 65 | 4 | 14 | 123 | 62 | 174 | 9.33e-18 | 77.0 |
MsG0380016838.01.T01 | MTR_2g086620 | 38.235 | 102 | 62 | 1 | 23 | 123 | 74 | 175 | 2.18e-17 | 75.9 |
MsG0380016838.01.T01 | MTR_2g086630 | 37.255 | 102 | 63 | 1 | 23 | 123 | 74 | 175 | 6.16e-17 | 74.7 |
MsG0380016838.01.T01 | MTR_8g020750 | 39.394 | 99 | 59 | 1 | 19 | 117 | 76 | 173 | 2.61e-16 | 73.2 |
MsG0380016838.01.T01 | MTR_4g027415 | 44.444 | 72 | 39 | 1 | 18 | 89 | 72 | 142 | 3.09e-13 | 63.5 |
MsG0380016838.01.T01 | MTR_3g019810 | 33.333 | 144 | 85 | 3 | 16 | 159 | 176 | 308 | 8.36e-13 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016838.01.T01 | AT5G61750 | 50.714 | 140 | 68 | 1 | 2 | 140 | 59 | 198 | 8.58e-44 | 144 |
MsG0380016838.01.T01 | AT1G02335 | 47.541 | 122 | 63 | 1 | 3 | 123 | 63 | 184 | 2.36e-32 | 115 |
MsG0380016838.01.T01 | AT1G09560 | 47.541 | 122 | 63 | 1 | 3 | 123 | 63 | 184 | 2.96e-31 | 112 |
MsG0380016838.01.T01 | AT3G62020 | 47.321 | 112 | 58 | 1 | 13 | 123 | 44 | 155 | 7.99e-29 | 105 |
MsG0380016838.01.T01 | AT3G62020 | 47.321 | 112 | 58 | 1 | 13 | 123 | 73 | 184 | 1.84e-28 | 105 |
MsG0380016838.01.T01 | AT5G26700 | 46.610 | 118 | 63 | 0 | 6 | 123 | 64 | 181 | 6.42e-28 | 103 |
MsG0380016838.01.T01 | AT1G72610 | 46.392 | 97 | 52 | 0 | 21 | 117 | 73 | 169 | 1.43e-27 | 102 |
MsG0380016838.01.T01 | AT5G38960 | 44.538 | 119 | 62 | 2 | 3 | 117 | 67 | 185 | 1.81e-27 | 102 |
MsG0380016838.01.T01 | AT3G10080 | 44.348 | 115 | 64 | 0 | 3 | 117 | 70 | 184 | 4.26e-27 | 102 |
MsG0380016838.01.T01 | AT3G10080 | 44.348 | 115 | 64 | 0 | 3 | 117 | 141 | 255 | 1.71e-26 | 102 |
MsG0380016838.01.T01 | AT3G05930 | 50.000 | 104 | 52 | 0 | 13 | 116 | 74 | 177 | 2.49e-26 | 99.8 |
MsG0380016838.01.T01 | AT5G38910 | 40.559 | 143 | 81 | 2 | 12 | 152 | 75 | 215 | 8.08e-26 | 98.6 |
MsG0380016838.01.T01 | AT5G38930 | 46.018 | 113 | 59 | 1 | 13 | 123 | 78 | 190 | 3.20e-25 | 97.1 |
MsG0380016838.01.T01 | AT5G38940 | 46.729 | 107 | 55 | 1 | 13 | 117 | 78 | 184 | 4.75e-25 | 96.3 |
MsG0380016838.01.T01 | AT5G38940 | 46.729 | 107 | 55 | 1 | 13 | 117 | 102 | 208 | 6.72e-25 | 96.7 |
MsG0380016838.01.T01 | AT1G10460 | 41.985 | 131 | 68 | 3 | 3 | 125 | 61 | 191 | 9.37e-25 | 95.5 |
MsG0380016838.01.T01 | AT5G20630 | 39.655 | 116 | 63 | 1 | 9 | 117 | 57 | 172 | 1.22e-23 | 92.4 |
MsG0380016838.01.T01 | AT4G14630 | 34.839 | 155 | 95 | 3 | 2 | 152 | 66 | 218 | 4.95e-23 | 91.3 |
MsG0380016838.01.T01 | AT3G04200 | 44.860 | 107 | 56 | 1 | 13 | 116 | 78 | 184 | 6.56e-23 | 90.9 |
MsG0380016838.01.T01 | AT1G18970 | 42.500 | 120 | 66 | 1 | 7 | 123 | 68 | 187 | 1.39e-22 | 90.1 |
MsG0380016838.01.T01 | AT3G05950 | 43.750 | 112 | 60 | 1 | 8 | 116 | 72 | 183 | 2.24e-22 | 89.7 |
MsG0380016838.01.T01 | AT1G18980 | 43.636 | 110 | 59 | 1 | 14 | 123 | 81 | 187 | 2.29e-22 | 89.4 |
MsG0380016838.01.T01 | AT3G04190 | 43.925 | 107 | 57 | 1 | 13 | 116 | 77 | 183 | 5.32e-22 | 88.6 |
MsG0380016838.01.T01 | AT5G39110 | 35.220 | 159 | 87 | 4 | 3 | 152 | 65 | 216 | 1.15e-21 | 87.4 |
MsG0380016838.01.T01 | AT5G39150 | 35.220 | 159 | 87 | 4 | 3 | 152 | 64 | 215 | 3.78e-21 | 86.3 |
MsG0380016838.01.T01 | AT5G39120 | 35.220 | 159 | 87 | 4 | 3 | 152 | 64 | 215 | 3.94e-21 | 86.3 |
MsG0380016838.01.T01 | AT5G39180 | 35.220 | 159 | 87 | 4 | 3 | 152 | 64 | 215 | 4.33e-21 | 86.3 |
MsG0380016838.01.T01 | AT3G04180 | 41.964 | 112 | 62 | 1 | 8 | 116 | 72 | 183 | 6.13e-21 | 85.9 |
MsG0380016838.01.T01 | AT3G04150 | 43.519 | 108 | 58 | 1 | 13 | 117 | 77 | 184 | 1.40e-20 | 84.7 |
MsG0380016838.01.T01 | AT3G04170 | 38.514 | 148 | 76 | 3 | 19 | 151 | 80 | 227 | 1.50e-20 | 84.7 |
MsG0380016838.01.T01 | AT3G04150 | 43.519 | 108 | 58 | 1 | 13 | 117 | 90 | 197 | 1.60e-20 | 85.1 |
MsG0380016838.01.T01 | AT5G39160 | 41.667 | 108 | 60 | 1 | 13 | 117 | 53 | 160 | 2.22e-20 | 83.6 |
MsG0380016838.01.T01 | AT5G39190 | 41.667 | 108 | 60 | 1 | 13 | 117 | 53 | 160 | 2.22e-20 | 83.6 |
MsG0380016838.01.T01 | AT5G39130 | 38.760 | 129 | 71 | 2 | 13 | 133 | 75 | 203 | 2.27e-20 | 84.3 |
MsG0380016838.01.T01 | AT5G39160 | 41.667 | 108 | 60 | 1 | 13 | 117 | 71 | 178 | 4.18e-20 | 83.6 |
MsG0380016838.01.T01 | AT5G39160 | 37.984 | 129 | 72 | 2 | 13 | 133 | 75 | 203 | 4.46e-20 | 83.6 |
MsG0380016838.01.T01 | AT5G39190 | 37.984 | 129 | 72 | 2 | 13 | 133 | 75 | 203 | 4.70e-20 | 83.6 |
MsG0380016838.01.T01 | AT1G74820 | 39.000 | 100 | 61 | 0 | 10 | 109 | 81 | 180 | 1.76e-14 | 68.6 |
Find 37 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGATCCCAACCCTGGATTT+TGG | 0.211780 | 3:+88471733 | None:intergenic |
CACTAGCTCTTGGATGATTA+TGG | 0.284341 | 3:+88471928 | None:intergenic |
GCAGGTTCAATAGATGATTC+TGG | 0.356320 | 3:-88472053 | MsG0380016838.01.T01:CDS |
TAATGTTAATGATTTGAGTT+TGG | 0.383346 | 3:-88471628 | MsG0380016838.01.T01:CDS |
CTTTATCTTCTCAACTGATT+CGG | 0.407952 | 3:+88471686 | None:intergenic |
CTTTGTTGAGGAAGGTGTAT+TGG | 0.411985 | 3:-88471898 | MsG0380016838.01.T01:CDS |
AAGAAATGGAACAAGCCCTT+AGG | 0.421816 | 3:+88471804 | None:intergenic |
ACCTGCTTTGCTTAATTCCA+TGG | 0.423219 | 3:+88472070 | None:intergenic |
AACACTCTTGGTATCTCAAT+TGG | 0.444841 | 3:-88471987 | MsG0380016838.01.T01:CDS |
AGAACAGACATTGAAGTTGA+TGG | 0.458478 | 3:-88471963 | MsG0380016838.01.T01:CDS |
CACCACGATTTAGAAAGAAA+TGG | 0.459409 | 3:+88471790 | None:intergenic |
AAGATCATCTCACTAGCTCT+TGG | 0.463818 | 3:+88471918 | None:intergenic |
TTCCATTTCTTTCTAAATCG+TGG | 0.465993 | 3:-88471792 | MsG0380016838.01.T01:CDS |
AATAGCCAAAATCCAGGGTT+GGG | 0.473458 | 3:-88471738 | MsG0380016838.01.T01:CDS |
AATCAGTTGAGAAGATAAAG+AGG | 0.476922 | 3:-88471683 | MsG0380016838.01.T01:CDS |
AGAAATGGAACAAGCCCTTA+GGG | 0.481120 | 3:+88471805 | None:intergenic |
GAGGAAGGTGTATTGGAAGC+TGG | 0.485772 | 3:-88471891 | MsG0380016838.01.T01:CDS |
TTCCCTGGCCTCAACACTCT+TGG | 0.487043 | 3:-88471999 | MsG0380016838.01.T01:CDS |
GTGTATAATAGCCAAAATCC+AGG | 0.499696 | 3:-88471744 | MsG0380016838.01.T01:CDS |
TACCAAGAGTGTTGAGGCCA+GGG | 0.502060 | 3:+88471997 | None:intergenic |
ATACCAAGAGTGTTGAGGCC+AGG | 0.514315 | 3:+88471996 | None:intergenic |
TAATAGCCAAAATCCAGGGT+TGG | 0.523741 | 3:-88471739 | MsG0380016838.01.T01:CDS |
GAACAGACATTGAAGTTGAT+GGG | 0.524364 | 3:-88471962 | MsG0380016838.01.T01:CDS |
ACCATGGAATTAAGCAAAGC+AGG | 0.525867 | 3:-88472071 | MsG0380016838.01.T01:CDS |
TCAACTGATTCGGAAGAAGA+AGG | 0.533585 | 3:+88471696 | None:intergenic |
TTTCAGAAGTCTTTGAAGGA+AGG | 0.534730 | 3:-88471843 | MsG0380016838.01.T01:CDS |
GTCACAGCTTCTAAGTTCCC+TGG | 0.546660 | 3:-88472014 | MsG0380016838.01.T01:CDS |
TGATTTGAGTTTGGCTGTGT+CGG | 0.549396 | 3:-88471619 | MsG0380016838.01.T01:CDS |
GCATTAAGAGATCCCAACCC+TGG | 0.564662 | 3:+88471726 | None:intergenic |
ATTTCTTGATACACAAAACA+AGG | 0.570126 | 3:-88471868 | MsG0380016838.01.T01:CDS |
TGATGTGTTTGTGATCCCTA+AGG | 0.571996 | 3:-88471820 | MsG0380016838.01.T01:CDS |
TAGTGAGATGATCTTTGTTG+AGG | 0.576125 | 3:-88471910 | MsG0380016838.01.T01:CDS |
GATGTGTTTGTGATCCCTAA+GGG | 0.586453 | 3:-88471819 | MsG0380016838.01.T01:CDS |
GAGATGATCTTTGTTGAGGA+AGG | 0.605865 | 3:-88471906 | MsG0380016838.01.T01:CDS |
TGTATAATAGCCAAAATCCA+GGG | 0.650796 | 3:-88471743 | MsG0380016838.01.T01:CDS |
TTGAGATACCAAGAGTGTTG+AGG | 0.653794 | 3:+88471991 | None:intergenic |
ACTGATTCGGAAGAAGAAGG+TGG | 0.681202 | 3:+88471699 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATGTTAATGATTTGAGTT+TGG | - | Chr3:88472042-88472061 | MsG0380016838.01.T01:CDS | 20.0% |
! | ATTTCTTGATACACAAAACA+AGG | - | Chr3:88471802-88471821 | MsG0380016838.01.T01:CDS | 25.0% |
AATCAGTTGAGAAGATAAAG+AGG | - | Chr3:88471987-88472006 | MsG0380016838.01.T01:CDS | 30.0% | |
CTTTATCTTCTCAACTGATT+CGG | + | Chr3:88471987-88472006 | None:intergenic | 30.0% | |
TGTATAATAGCCAAAATCCA+GGG | - | Chr3:88471927-88471946 | MsG0380016838.01.T01:CDS | 30.0% | |
TTCCATTTCTTTCTAAATCG+TGG | - | Chr3:88471878-88471897 | MsG0380016838.01.T01:CDS | 30.0% | |
AACACTCTTGGTATCTCAAT+TGG | - | Chr3:88471683-88471702 | MsG0380016838.01.T01:CDS | 35.0% | |
AGAACAGACATTGAAGTTGA+TGG | - | Chr3:88471707-88471726 | MsG0380016838.01.T01:CDS | 35.0% | |
CACCACGATTTAGAAAGAAA+TGG | + | Chr3:88471883-88471902 | None:intergenic | 35.0% | |
GTGTATAATAGCCAAAATCC+AGG | - | Chr3:88471926-88471945 | MsG0380016838.01.T01:CDS | 35.0% | |
TAGTGAGATGATCTTTGTTG+AGG | - | Chr3:88471760-88471779 | MsG0380016838.01.T01:CDS | 35.0% | |
! | GAACAGACATTGAAGTTGAT+GGG | - | Chr3:88471708-88471727 | MsG0380016838.01.T01:CDS | 35.0% |
! | TTTCAGAAGTCTTTGAAGGA+AGG | - | Chr3:88471827-88471846 | MsG0380016838.01.T01:CDS | 35.0% |
!! | GGTTTTTCAGAAGTCTTTGA+AGG | - | Chr3:88471823-88471842 | MsG0380016838.01.T01:CDS | 35.0% |
AAGAAATGGAACAAGCCCTT+AGG | + | Chr3:88471869-88471888 | None:intergenic | 40.0% | |
AATAGCCAAAATCCAGGGTT+GGG | - | Chr3:88471932-88471951 | MsG0380016838.01.T01:CDS | 40.0% | |
AGAAATGGAACAAGCCCTTA+GGG | + | Chr3:88471868-88471887 | None:intergenic | 40.0% | |
GAGATGATCTTTGTTGAGGA+AGG | - | Chr3:88471764-88471783 | MsG0380016838.01.T01:CDS | 40.0% | |
GATGTGTTTGTGATCCCTAA+GGG | - | Chr3:88471851-88471870 | MsG0380016838.01.T01:CDS | 40.0% | |
GCAGGTTCAATAGATGATTC+TGG | - | Chr3:88471617-88471636 | MsG0380016838.01.T01:CDS | 40.0% | |
TAATAGCCAAAATCCAGGGT+TGG | - | Chr3:88471931-88471950 | MsG0380016838.01.T01:CDS | 40.0% | |
TGATGTGTTTGTGATCCCTA+AGG | - | Chr3:88471850-88471869 | MsG0380016838.01.T01:CDS | 40.0% | |
! | AAGATCATCTCACTAGCTCT+TGG | + | Chr3:88471755-88471774 | None:intergenic | 40.0% |
! | CACTAGCTCTTGGATGATTA+TGG | + | Chr3:88471745-88471764 | None:intergenic | 40.0% |
! | CTTTGTTGAGGAAGGTGTAT+TGG | - | Chr3:88471772-88471791 | MsG0380016838.01.T01:CDS | 40.0% |
! | TGATTTGAGTTTGGCTGTGT+CGG | - | Chr3:88472051-88472070 | MsG0380016838.01.T01:CDS | 40.0% |
!! | TCAACTGATTCGGAAGAAGA+AGG | + | Chr3:88471977-88471996 | None:intergenic | 40.0% |
!! | TTGAGATACCAAGAGTGTTG+AGG | + | Chr3:88471682-88471701 | None:intergenic | 40.0% |
!! | ACTGATTCGGAAGAAGAAGG+TGG | + | Chr3:88471974-88471993 | None:intergenic | 45.0% |
GCATTAAGAGATCCCAACCC+TGG | + | Chr3:88471947-88471966 | None:intergenic | 50.0% | |
GTCACAGCTTCTAAGTTCCC+TGG | - | Chr3:88471656-88471675 | MsG0380016838.01.T01:CDS | 50.0% | |
! | GAGATCCCAACCCTGGATTT+TGG | + | Chr3:88471940-88471959 | None:intergenic | 50.0% |
! | GAGGAAGGTGTATTGGAAGC+TGG | - | Chr3:88471779-88471798 | MsG0380016838.01.T01:CDS | 50.0% |
!! | ATACCAAGAGTGTTGAGGCC+AGG | + | Chr3:88471677-88471696 | None:intergenic | 50.0% |
!! | TACCAAGAGTGTTGAGGCCA+GGG | + | Chr3:88471676-88471695 | None:intergenic | 50.0% |
TTCCCTGGCCTCAACACTCT+TGG | - | Chr3:88471671-88471690 | MsG0380016838.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 88471602 | 88472090 | 88471602 | ID=MsG0380016838.01;Name=MsG0380016838.01 |
Chr3 | mRNA | 88471602 | 88472090 | 88471602 | ID=MsG0380016838.01.T01;Parent=MsG0380016838.01;Name=MsG0380016838.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|162 |
Chr3 | exon | 88471602 | 88472090 | 88471602 | ID=MsG0380016838.01.T01:exon:24990;Parent=MsG0380016838.01.T01 |
Chr3 | CDS | 88471602 | 88472090 | 88471602 | ID=MsG0380016838.01.T01:cds;Parent=MsG0380016838.01.T01 |
Gene Sequence |
Protein sequence |