AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018692.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018692.01.T01 MTR_5g046410 89.908 218 20 2 1 217 1 217 5.93e-136 380
MsG0480018692.01.T01 MTR_5g046430 89.908 218 20 2 1 217 1 217 5.93e-136 380
MsG0480018692.01.T01 MTR_4g017030 89.908 218 20 2 1 217 1 217 5.93e-136 380
MsG0480018692.01.T01 MTR_4g017050 89.450 218 21 2 1 217 1 217 2.11e-135 379
MsG0480018692.01.T01 MTR_2g019250 88.991 218 22 2 1 217 1 217 6.26e-135 378
MsG0480018692.01.T01 MTR_4g017040 87.615 218 25 2 1 217 1 217 7.46e-133 373
MsG0480018692.01.T01 MTR_1g079490 72.222 216 59 1 1 215 1 216 9.85e-108 309
MsG0480018692.01.T01 MTR_6g005310 69.340 212 63 2 4 215 5 214 1.85e-96 281
MsG0480018692.01.T01 MTR_6g005330 68.981 216 64 3 1 215 1 214 2.46e-96 280
MsG0480018692.01.T01 MTR_6g005340 69.340 212 63 2 4 215 5 214 3.77e-96 280
MsG0480018692.01.T01 MTR_6g005360 66.977 215 70 1 1 215 1 214 7.85e-96 279
MsG0480018692.01.T01 MTR_6g005380 57.143 210 86 4 1 208 1 208 1.01e-72 220
MsG0480018692.01.T01 MTR_6g005350 57.277 213 88 3 3 215 4 213 3.06e-71 216
MsG0480018692.01.T01 MTR_2g030855 62.791 172 59 3 47 215 42 211 4.64e-70 213
MsG0480018692.01.T01 MTR_1g023770 61.453 179 66 2 39 215 31 208 6.38e-70 213
MsG0480018692.01.T01 MTR_2g030895 61.850 173 60 4 47 215 7 177 4.54e-68 207
MsG0480018692.01.T01 MTR_2g031270 62.209 172 60 3 47 215 43 212 1.42e-67 207
MsG0480018692.01.T01 MTR_2g030865 61.850 173 60 4 47 215 7 177 1.90e-67 206
MsG0480018692.01.T01 MTR_2g031300 52.047 171 57 4 47 214 7 155 7.22e-48 155
MsG0480018692.01.T01 MTR_1g085500 45.355 183 94 3 35 215 35 213 1.16e-47 156
MsG0480018692.01.T01 MTR_7g111240 45.506 178 92 2 40 215 36 210 5.30e-43 144
MsG0480018692.01.T01 MTR_7g111240 46.023 176 90 2 42 215 35 207 1.13e-42 143
MsG0480018692.01.T01 MTR_1g085140 43.750 176 94 2 42 215 42 214 1.26e-42 144
MsG0480018692.01.T01 MTR_5g036570 42.778 180 97 3 39 215 42 218 3.35e-39 135
MsG0480018692.01.T01 MTR_2g041550 44.767 172 88 3 44 213 37 203 1.33e-38 133
MsG0480018692.01.T01 MTR_1g112200 41.899 179 80 5 47 215 42 206 2.94e-36 127
MsG0480018692.01.T01 MTR_2g041570 36.620 213 118 5 4 214 7 204 1.78e-33 120
MsG0480018692.01.T01 MTR_2g041580 36.792 212 117 5 4 213 7 203 1.96e-33 120
MsG0480018692.01.T01 MTR_1g060120 38.235 170 99 3 47 215 56 220 3.48e-33 119
MsG0480018692.01.T01 MTR_8g007300 39.130 184 99 4 34 215 38 210 1.21e-30 113
MsG0480018692.01.T01 MTR_8g020750 42.667 150 80 2 43 190 39 184 1.79e-30 112
MsG0480018692.01.T01 MTR_8g020590 39.655 174 98 4 43 214 34 202 3.28e-29 108
MsG0480018692.01.T01 MTR_3g019710 40.385 156 87 3 43 197 37 187 2.06e-26 101
MsG0480018692.01.T01 MTR_8g020630 39.855 138 78 2 43 179 37 170 2.13e-26 101
MsG0480018692.01.T01 MTR_8g020650 39.855 138 78 2 43 179 37 170 7.27e-26 100
MsG0480018692.01.T01 MTR_2g086620 41.221 131 71 3 85 214 77 202 9.31e-26 99.8
MsG0480018692.01.T01 MTR_4g052780 42.308 130 69 3 86 214 79 203 2.83e-25 98.6
MsG0480018692.01.T01 MTR_2g086630 40.458 131 72 3 85 214 77 202 2.86e-25 98.6
MsG0480018692.01.T01 MTR_2g086640 40.458 131 72 3 85 214 76 201 3.38e-25 98.6
MsG0480018692.01.T01 MTR_4g052770 42.308 130 69 3 86 214 79 203 5.18e-25 97.8
MsG0480018692.01.T01 MTR_2g045100 40.441 136 76 2 43 177 37 168 8.45e-25 97.4
MsG0480018692.01.T01 MTR_2g036120 41.176 136 75 2 43 177 37 168 1.51e-24 96.7
MsG0480018692.01.T01 MTR_8g020770 42.105 133 70 2 47 176 42 170 1.58e-24 97.1
MsG0480018692.01.T01 MTR_3g019650 38.462 156 90 3 43 197 36 186 5.24e-24 95.5
MsG0480018692.01.T01 MTR_3g019680 38.462 156 90 3 43 197 36 186 1.38e-23 94.4
MsG0480018692.01.T01 MTR_8g020670 38.686 137 79 2 44 179 38 170 1.92e-23 94.0
MsG0480018692.01.T01 MTR_3g096330 40.411 146 81 3 36 179 591 732 3.42e-23 97.8
MsG0480018692.01.T01 MTR_8g020763 36.095 169 99 3 43 206 17 181 5.94e-23 92.0
MsG0480018692.01.T01 MTR_4g010340 36.207 174 103 4 43 215 34 200 9.56e-23 92.0
MsG0480018692.01.T01 MTR_2g044040 38.636 132 76 2 47 177 41 168 1.32e-22 91.7
MsG0480018692.01.T01 MTR_0284s0010 34.434 212 121 5 1 206 1 200 1.94e-22 91.3
MsG0480018692.01.T01 MTR_8g020610 36.095 169 99 5 47 213 39 200 2.98e-22 90.9
MsG0480018692.01.T01 MTR_8g020760 33.333 219 129 5 1 215 1 206 3.98e-21 87.8
MsG0480018692.01.T01 MTR_5g031460 34.911 169 102 3 42 206 36 200 8.44e-21 87.0
MsG0480018692.01.T01 MTR_7g011340 35.714 168 100 3 43 206 37 200 1.18e-19 84.0
MsG0480018692.01.T01 MTR_3g073170 34.524 168 99 4 43 206 41 201 2.48e-19 83.2
MsG0480018692.01.T01 MTR_2g019780 32.184 174 108 4 43 215 43 207 3.55e-18 80.1
MsG0480018692.01.T01 MTR_2g030915 48.611 72 22 1 97 168 5 61 1.12e-15 70.5
MsG0480018692.01.T01 MTR_4g027415 36.697 109 64 2 44 151 38 142 3.90e-12 62.0
MsG0480018692.01.T01 MTR_3g019810 31.068 206 118 8 1 202 107 292 4.07e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018692.01.T01 AT3G05950 59.447 217 82 3 4 215 5 220 7.25e-81 241
MsG0480018692.01.T01 AT5G39160 57.895 209 85 2 9 215 11 218 5.31e-76 229
MsG0480018692.01.T01 AT5G39190 57.895 209 85 2 9 215 11 218 7.36e-76 228
MsG0480018692.01.T01 AT5G39130 56.938 209 87 2 9 215 11 218 1.50e-75 228
MsG0480018692.01.T01 AT5G39120 57.075 212 86 4 7 215 9 218 1.56e-75 228
MsG0480018692.01.T01 AT5G39150 56.164 219 91 4 1 215 1 218 1.56e-75 228
MsG0480018692.01.T01 AT5G39180 56.164 219 91 4 1 215 1 218 3.04e-75 227
MsG0480018692.01.T01 AT5G39110 57.075 212 87 3 7 215 9 219 4.41e-75 226
MsG0480018692.01.T01 AT4G14630 55.909 220 91 4 1 215 3 221 2.14e-72 219
MsG0480018692.01.T01 AT5G39160 55.981 209 85 2 9 215 11 214 4.70e-72 219
MsG0480018692.01.T01 AT3G04200 54.884 215 94 3 1 213 6 219 1.64e-71 218
MsG0480018692.01.T01 AT5G38940 55.385 195 84 2 23 215 27 220 3.01e-66 204
MsG0480018692.01.T01 AT5G38940 55.385 195 84 2 23 215 51 244 4.36e-66 204
MsG0480018692.01.T01 AT5G39190 65.563 151 52 0 65 215 46 196 7.94e-66 202
MsG0480018692.01.T01 AT5G39160 65.563 151 52 0 65 215 46 196 8.20e-66 202
MsG0480018692.01.T01 AT5G38930 56.410 195 82 2 23 215 27 220 1.04e-65 202
MsG0480018692.01.T01 AT5G38910 55.656 221 89 6 1 215 1 218 7.18e-65 201
MsG0480018692.01.T01 AT5G38960 55.941 202 85 3 17 215 21 221 1.20e-64 200
MsG0480018692.01.T01 AT3G04190 51.244 201 95 2 15 213 19 218 1.01e-62 195
MsG0480018692.01.T01 AT3G04150 49.309 217 104 3 3 214 4 219 4.13e-62 194
MsG0480018692.01.T01 AT3G04170 50.725 207 96 3 10 214 14 216 1.51e-61 192
MsG0480018692.01.T01 AT3G04150 54.802 177 78 1 40 214 56 232 5.66e-60 189
MsG0480018692.01.T01 AT3G04180 49.254 201 99 2 15 213 19 218 1.25e-59 187
MsG0480018692.01.T01 AT1G02335 43.750 176 94 2 42 215 42 214 3.98e-44 147
MsG0480018692.01.T01 AT1G09560 44.318 176 93 2 42 215 42 214 1.08e-43 146
MsG0480018692.01.T01 AT5G26700 47.305 167 76 4 42 204 39 197 3.90e-43 145
MsG0480018692.01.T01 AT1G18970 44.886 176 90 3 42 215 47 217 7.40e-43 144
MsG0480018692.01.T01 AT3G62020 45.198 177 91 3 42 215 12 185 1.09e-42 143
MsG0480018692.01.T01 AT3G05930 43.350 203 106 4 3 202 5 201 1.50e-42 143
MsG0480018692.01.T01 AT3G62020 45.198 177 91 3 42 215 41 214 2.67e-42 143
MsG0480018692.01.T01 AT5G38910 44.796 221 76 6 1 215 1 181 2.74e-41 139
MsG0480018692.01.T01 AT1G18980 44.318 176 91 3 42 215 47 217 8.78e-41 139
MsG0480018692.01.T01 AT1G10460 40.782 179 99 4 40 214 38 213 1.52e-36 128
MsG0480018692.01.T01 AT5G61750 43.791 153 81 2 36 186 33 182 5.11e-36 126
MsG0480018692.01.T01 AT3G10080 40.000 170 96 3 47 215 54 218 6.88e-36 127
MsG0480018692.01.T01 AT3G10080 40.000 170 96 3 47 215 125 289 3.48e-35 127
MsG0480018692.01.T01 AT5G20630 38.571 210 117 7 1 208 1 200 7.45e-33 118
MsG0480018692.01.T01 AT1G72610 40.116 172 96 5 44 213 35 201 4.98e-29 108
MsG0480018692.01.T01 AT1G74820 35.829 187 108 4 31 215 48 224 2.74e-27 104
MsG0480018692.01.T01 AT5G38950 54.167 72 33 0 145 216 2 73 1.00e-18 78.6

Find 62 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAACTGAATGTTGGATA+TGG 0.274546 4:-8662788 MsG0480018692.01.T01:CDS
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 4:-8663448 MsG0480018692.01.T01:CDS
TGAAAATGAATTAGACCAAT+TGG 0.315504 4:+8662806 None:intergenic
ATATATACATACACCATCTT+TGG 0.317006 4:+8663362 None:intergenic
TATATACATACACCATCTTT+GGG 0.320376 4:+8663363 None:intergenic
CTTGTCAACTTGAAAAGCTT+TGG 0.328967 4:+8662661 None:intergenic
TTGAGATCCTAGTGCATTAG+AGG 0.333822 4:+8663057 None:intergenic
TTCCTCTAGGGTGGATGTGA+GGG 0.379954 4:+8662942 None:intergenic
TCCTGTATGACAACAACTAT+TGG 0.383407 4:-8662611 MsG0480018692.01.T01:CDS
GAGTGCCTTCGAGTACTATA+AGG 0.397511 4:+8662912 None:intergenic
TAACACGCTTGGTATCTCTT+TGG 0.399374 4:-8662999 MsG0480018692.01.T01:CDS
ATACTTCCTTGTTAGCATCT+TGG 0.401215 4:-8663454 MsG0480018692.01.T01:CDS
GATGTCTTTGTGTTCCCAAT+TGG 0.401977 4:-8662821 MsG0480018692.01.T01:CDS
TTCTTCAAACATGTTGAAGC+TGG 0.402098 4:-8663085 MsG0480018692.01.T01:CDS
TCCAATAGTTGTTGTCATAC+AGG 0.414842 4:+8662610 None:intergenic
TAAAGAGCCGGTTGTTGTCT+TGG 0.425026 4:+8662864 None:intergenic
GGCAACGCGGTTGCTATCGC+TGG 0.429748 4:-8662767 MsG0480018692.01.T01:CDS
CAAAAGTCTTGGAGAGGGCT+GGG 0.429933 4:+8663400 None:intergenic
CTCGAAGGCACTCTTTATGT+TGG 0.443268 4:-8662902 MsG0480018692.01.T01:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 4:+8663109 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.448530 4:-8663025 MsG0480018692.01.T01:CDS
CATCAAACCAAGACAACAAC+CGG 0.452231 4:-8662871 MsG0480018692.01.T01:CDS
GAAAATGAATTAGACCAATT+GGG 0.461091 4:+8662807 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.464306 4:+8662941 None:intergenic
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4:+8662929 None:intergenic
ACAAAAGTCTTGGAGAGGGC+TGG 0.468953 4:+8663399 None:intergenic
TTTGCAACGGTGATAACTCC+TGG 0.470922 4:+8662728 None:intergenic
TGATTGCAACACAAAAGTCT+TGG 0.491107 4:+8663389 None:intergenic
ATAATTGCAGTATTTGTGAA+TGG 0.498461 4:-8663148 MsG0480018692.01.T01:intron
TCTTCAAACATGTTGAAGCT+GGG 0.501315 4:-8663084 MsG0480018692.01.T01:CDS
TCCTCTAGGGTGGATGTGAG+GGG 0.509895 4:+8662943 None:intergenic
CTATTCGGACTTAACACGCT+TGG 0.510323 4:-8663010 MsG0480018692.01.T01:CDS
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4:+8662686 None:intergenic
CCTCTAGGGTGGATGTGAGG+GGG 0.524965 4:+8662944 None:intergenic
TAATTGCAGTATTTGTGAAT+GGG 0.528576 4:-8663147 MsG0480018692.01.T01:intron
GAGGGCTGGGGTCAGAAGCA+AGG 0.533272 4:+8663413 None:intergenic
GCGTGTTAAGTCCGAATAGT+TGG 0.534502 4:+8663014 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 4:+8663108 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 4:-8662846 MsG0480018692.01.T01:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 4:+8662676 None:intergenic
CCAAAGCCAAGATGCTAACA+AGG 0.556137 4:+8663448 None:intergenic
GGTCAGAAGCAAGGCAAGAG+AGG 0.559300 4:+8663422 None:intergenic
AAAAGTCTTGGAGAGGGCTG+GGG 0.564168 4:+8663401 None:intergenic
AATAGTTGGTCTACAGTGAC+CGG 0.566317 4:+8663028 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.571487 4:+8662841 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4:+8662930 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 4:-8662746 MsG0480018692.01.T01:CDS
TGAGCACCTTGGTAAAGAGC+CGG 0.579420 4:+8662852 None:intergenic
GGGAATGCCTCTAATGCACT+AGG 0.589101 4:-8663064 MsG0480018692.01.T01:CDS
TTGCAATCAAACCCCAAAGA+TGG 0.589705 4:-8663375 MsG0480018692.01.T01:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4:+8662933 None:intergenic
TTTAAACAAAGCATTTGCAA+CGG 0.590900 4:+8662715 None:intergenic
ACTAGGATCTCAAGTGACTC+CGG 0.624129 4:-8663047 MsG0480018692.01.T01:CDS
ATATACATACACCATCTTTG+GGG 0.631622 4:+8663364 None:intergenic
CAACACAAAAGTCTTGGAGA+GGG 0.634245 4:+8663395 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 4:+8663394 None:intergenic
CCCTTAGGCACAAAATCACG+CGG 0.660679 4:+8662974 None:intergenic
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 4:+8663110 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 4:-8662917 MsG0480018692.01.T01:CDS
TTTACCAAGGTGCTCAACAA+GGG 0.669433 4:-8662845 MsG0480018692.01.T01:CDS
CAACAACCGGCTCTTTACCA+AGG 0.674974 4:-8662858 MsG0480018692.01.T01:CDS
GAATGTTGGATATGGCAACG+CGG 0.840401 4:-8662780 MsG0480018692.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTACAACTAAATTTTT+AGG - Chr4:8662740-8662759 MsG0480018692.01.T01:CDS 10.0%
!! TTTAAATATGCAAATATTAG+AGG - Chr4:8662763-8662782 MsG0480018692.01.T01:CDS 15.0%
!! GTAATTAACACTTAAAGTTA+AGG + Chr4:8662728-8662747 None:intergenic 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - Chr4:8662805-8662824 MsG0480018692.01.T01:CDS 20.0%
! ATAATTGCAGTATTTGTGAA+TGG - Chr4:8662915-8662934 MsG0480018692.01.T01:CDS 25.0%
! ATATATACATACACCATCTT+TGG + Chr4:8662704-8662723 None:intergenic 25.0%
! CAAAAGATTCTATATTGACA+AGG + Chr4:8662802-8662821 None:intergenic 25.0%
! GAAAATGAATTAGACCAATT+GGG + Chr4:8663259-8663278 None:intergenic 25.0%
! TAATTGCAGTATTTGTGAAT+GGG - Chr4:8662916-8662935 MsG0480018692.01.T01:CDS 25.0%
! TATATACATACACCATCTTT+GGG + Chr4:8662703-8662722 None:intergenic 25.0%
! TGAAAATGAATTAGACCAAT+TGG + Chr4:8663260-8663279 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG - Chr4:8663269-8663288 MsG0480018692.01.T01:intron 25.0%
!! TATGCAAATATTAGAGGTTT+TGG - Chr4:8662769-8662788 MsG0480018692.01.T01:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG + Chr4:8663351-8663370 None:intergenic 25.0%
!!! TTTGGTCATGAATGTTTTTT+TGG - Chr4:8662823-8662842 MsG0480018692.01.T01:CDS 25.0%
ATATACATACACCATCTTTG+GGG + Chr4:8662702-8662721 None:intergenic 30.0%
TTTCAACTGAATGTTGGATA+TGG - Chr4:8663275-8663294 MsG0480018692.01.T01:intron 30.0%
ATACTTCCTTGTTAGCATCT+TGG - Chr4:8662609-8662628 MsG0480018692.01.T01:CDS 35.0%
CTTGTCAACTTGAAAAGCTT+TGG + Chr4:8663405-8663424 None:intergenic 35.0%
TCCAATAGTTGTTGTCATAC+AGG + Chr4:8663456-8663475 None:intergenic 35.0%
TCCTGTATGACAACAACTAT+TGG - Chr4:8663452-8663471 MsG0480018692.01.T01:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - Chr4:8662979-8662998 MsG0480018692.01.T01:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG + Chr4:8662677-8662696 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - Chr4:8662978-8662997 MsG0480018692.01.T01:CDS 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + Chr4:8662958-8662977 None:intergenic 35.0%
!!! GTTTTTTTGGTTAGCTAGCT+AGG - Chr4:8662836-8662855 MsG0480018692.01.T01:CDS 35.0%
AGAACTTCGTCGGAAATAAG+AGG + Chr4:8663380-8663399 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + Chr4:8663137-8663156 None:intergenic 40.0%
CAACACAAAAGTCTTGGAGA+GGG + Chr4:8662671-8662690 None:intergenic 40.0%
CATCAAACCAAGACAACAAC+CGG - Chr4:8663192-8663211 MsG0480018692.01.T01:intron 40.0%
GAGATCCTTATAGTACTCGA+AGG - Chr4:8663146-8663165 MsG0480018692.01.T01:intron 40.0%
GATGTCTTTGTGTTCCCAAT+TGG - Chr4:8663242-8663261 MsG0480018692.01.T01:intron 40.0%
GTCACTGTAGACCAACTATT+CGG - Chr4:8663038-8663057 MsG0480018692.01.T01:CDS 40.0%
TAACACGCTTGGTATCTCTT+TGG - Chr4:8663064-8663083 MsG0480018692.01.T01:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + Chr4:8663136-8663155 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + Chr4:8663009-8663028 None:intergenic 40.0%
TTGCAATCAAACCCCAAAGA+TGG - Chr4:8662688-8662707 MsG0480018692.01.T01:CDS 40.0%
! AATAGTTGGTCTACAGTGAC+CGG + Chr4:8663038-8663057 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + Chr4:8663390-8663409 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + Chr4:8662957-8662976 None:intergenic 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - Chr4:8663218-8663237 MsG0480018692.01.T01:intron 40.0%
ACTAGGATCTCAAGTGACTC+CGG - Chr4:8663016-8663035 MsG0480018692.01.T01:CDS 45.0%
CCAAAGCCAAGATGCTAACA+AGG + Chr4:8662618-8662637 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - Chr4:8662615-8662634 MsG0480018692.01.T01:CDS 45.0%
CTATTCGGACTTAACACGCT+TGG - Chr4:8663053-8663072 MsG0480018692.01.T01:CDS 45.0%
GAATGTTGGATATGGCAACG+CGG - Chr4:8663283-8663302 MsG0480018692.01.T01:intron 45.0%
GAGTGCCTTCGAGTACTATA+AGG + Chr4:8663154-8663173 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG + Chr4:8662672-8662691 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + Chr4:8663052-8663071 None:intergenic 45.0%
GGACTTAGCAGTCAAAATCC+AGG - Chr4:8663317-8663336 MsG0480018692.01.T01:intron 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG + Chr4:8663202-8663221 None:intergenic 45.0%
TTTGCAACGGTGATAACTCC+TGG + Chr4:8663338-8663357 None:intergenic 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + Chr4:8662956-8662975 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - Chr4:8663217-8663236 MsG0480018692.01.T01:intron 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - Chr4:8663161-8663180 MsG0480018692.01.T01:intron 45.0%
!!! TGAGGGGGTTTTAAACCCTT+AGG + Chr4:8663107-8663126 None:intergenic 45.0%
AAAAGTCTTGGAGAGGGCTG+GGG + Chr4:8662665-8662684 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + Chr4:8662667-8662686 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG + Chr4:8663225-8663244 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + Chr4:8662666-8662685 None:intergenic 50.0%
CCCTTAGGCACAAAATCACG+CGG + Chr4:8663092-8663111 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - Chr4:8662999-8663018 MsG0480018692.01.T01:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG + Chr4:8663214-8663233 None:intergenic 50.0%
! CAACAACCGGCTCTTTACCA+AGG - Chr4:8663205-8663224 MsG0480018692.01.T01:intron 50.0%
! CCGCGTGATTTTGTGCCTAA+GGG - Chr4:8663089-8663108 MsG0480018692.01.T01:CDS 50.0%
! TCCGCGTGATTTTGTGCCTA+AGG - Chr4:8663088-8663107 MsG0480018692.01.T01:CDS 50.0%
!! TTCCTCTAGGGTGGATGTGA+GGG + Chr4:8663124-8663143 None:intergenic 50.0%
GGTCAGAAGCAAGGCAAGAG+AGG + Chr4:8662644-8662663 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + Chr4:8663133-8663152 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + Chr4:8663125-8663144 None:intergenic 55.0%
!! TCCTCTAGGGTGGATGTGAG+GGG + Chr4:8663123-8663142 None:intergenic 55.0%
!! CCTCTAGGGTGGATGTGAGG+GGG + Chr4:8663122-8663141 None:intergenic 60.0%
CCCCCTCACATCCACCCTAG+AGG - Chr4:8663119-8663138 MsG0480018692.01.T01:CDS 65.0%
GAGGGCTGGGGTCAGAAGCA+AGG + Chr4:8662653-8662672 None:intergenic 65.0%
GGCAACGCGGTTGCTATCGC+TGG - Chr4:8663296-8663315 MsG0480018692.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 8662598 8663487 8662598 ID=MsG0480018692.01;Name=MsG0480018692.01
Chr4 mRNA 8662598 8663487 8662598 ID=MsG0480018692.01.T01;Parent=MsG0480018692.01;Name=MsG0480018692.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0|0|1|0|0.5|2|0|226
Chr4 exon 8663370 8663487 8663370 ID=MsG0480018692.01.T01:exon:2075;Parent=MsG0480018692.01.T01
Chr4 exon 8662598 8663160 8662598 ID=MsG0480018692.01.T01:exon:2074;Parent=MsG0480018692.01.T01
Chr4 CDS 8663370 8663487 8663370 ID=MsG0480018692.01.T01:cds;Parent=MsG0480018692.01.T01
Chr4 CDS 8662598 8663160 8662598 ID=MsG0480018692.01.T01:cds;Parent=MsG0480018692.01.T01
Gene Sequence

>MsG0480018692.01.T01

ATGAAGATTATATACTTCCTTGTTAGCATCTTGGCTTTGGCATCCTCTCTTGCCTTGCTTCTGACCCCAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAACCCCAAAGATGGTGTATTATTTGTGAATGGGAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAATGCACTAGGATCTCAAGTGACTCCGGTCACTGTAGACCAACTATTCGGACTTAACACGCTTGGTATCTCTTTGGCTCCGCGTGATTTTGTGCCTAAGGGTTTAAAACCCCCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCTCATCAAACCAAGACAACAACCGGCTCTTTACCAAGGTGCTCAACAAGGGTGATGTCTTTGTGTTCCCAATTGGTCTAATTCATTTTCAACTGAATGTTGGATATGGCAACGCGGTTGCTATCGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACCGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTTGACAAGAGCATAATTGATTATCTTCAAAAGCAGTCCTGTATGACAACAACTATTGGAGAACATGATTAG

Protein sequence

>MsG0480018692.01.T01

MKIIYFLVSILALASSLALLLTPALSKTFVLQSNPKDGVLFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLAPRDFVPKGLKPPHIHPRGTEILIVLEGTLYVGFVSSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSCMTTTIGEHD*