Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030380.01.T01 | AES74382.1 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 4.87E-152 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030380.01.T01 | Q6K5Q0 | 66.514 | 218 | 68 | 3 | 1 | 215 | 1 | 216 | 1.90E-93 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030380.01.T01 | G7KQ17 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 2.32e-152 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0680030380.01 | 0.800593 | 1.340339e-48 | 6.265423e-46 |
| MsG0180001029.01 | MsG0680030380.01 | 0.804913 | 1.719210e-49 | 8.974450e-47 |
| MsG0180001513.01 | MsG0680030380.01 | 0.817449 | 3.278120e-52 | 2.388146e-49 |
| MsG0180001515.01 | MsG0680030380.01 | 0.818293 | 2.114627e-52 | 1.576495e-49 |
| MsG0180001797.01 | MsG0680030380.01 | 0.805427 | 1.342140e-49 | 7.098597e-47 |
| MsG0180001800.01 | MsG0680030380.01 | 0.811352 | 7.307256e-51 | 4.512756e-48 |
| MsG0180003237.01 | MsG0680030380.01 | 0.809781 | 1.596783e-50 | 9.461405e-48 |
| MsG0380011635.01 | MsG0680030380.01 | 0.800549 | 1.367927e-48 | 6.387355e-46 |
| MsG0380013212.01 | MsG0680030380.01 | 0.800047 | 1.730712e-48 | 7.979066e-46 |
| MsG0380014344.01 | MsG0680030380.01 | 0.806937 | 6.453087e-50 | 3.547760e-47 |
| MsG0480018692.01 | MsG0680030380.01 | 0.838570 | 2.658761e-57 | 3.575509e-54 |
| MsG0480018693.01 | MsG0680030380.01 | 0.833550 | 5.000821e-56 | 5.778513e-53 |
| MsG0480018697.01 | MsG0680030380.01 | 0.848472 | 5.996253e-60 | 1.101800e-56 |
| MsG0480019301.01 | MsG0680030380.01 | 0.818856 | 1.575641e-52 | 1.193184e-49 |
| MsG0480019346.01 | MsG0680030380.01 | 0.855548 | 5.860331e-62 | 1.357887e-58 |
| MsG0480019348.01 | MsG0680030380.01 | 0.854767 | 9.884277e-62 | 2.231596e-58 |
| MsG0480020754.01 | MsG0680030380.01 | 0.806395 | 8.399831e-50 | 4.554013e-47 |
| MsG0480020755.01 | MsG0680030380.01 | 0.802953 | 4.391955e-49 | 2.179787e-46 |
| MsG0480021133.01 | MsG0680030380.01 | 0.813022 | 3.158120e-51 | 2.039205e-48 |
| MsG0480021573.01 | MsG0680030380.01 | 0.811969 | 5.365472e-51 | 3.368393e-48 |
| MsG0580025965.01 | MsG0680030380.01 | 0.827288 | 1.699681e-54 | 1.633791e-51 |
| MsG0380015659.01 | MsG0680030380.01 | 0.841351 | 5.007567e-58 | 7.337763e-55 |
| MsG0380015660.01 | MsG0680030380.01 | 0.810724 | 9.995485e-51 | 6.071528e-48 |
| MsG0580027751.01 | MsG0680030380.01 | 0.863683 | 2.089190e-64 | 6.388517e-61 |
| MsG0580027752.01 | MsG0680030380.01 | 0.862300 | 5.589297e-64 | 1.628847e-60 |
| MsG0580027753.01 | MsG0680030380.01 | 0.852584 | 4.194895e-61 | 8.805700e-58 |
| MsG0580029518.01 | MsG0680030380.01 | 0.801553 | 8.527161e-49 | 4.084073e-46 |
| MsG0680030379.01 | MsG0680030380.01 | 0.888887 | 3.962408e-73 | 3.126419e-69 |
| MsG0680030380.01 | MsG0680030382.01 | 0.896996 | 2.156924e-76 | 2.389454e-72 |
| MsG0680030380.01 | MsG0680031009.01 | 0.800341 | 1.508375e-48 | 7.006384e-46 |
| MsG0680030380.01 | MsG0680032461.01 | 0.820692 | 5.998687e-53 | 4.779665e-50 |
| MsG0680030380.01 | MsG0680034969.01 | 0.804106 | 2.533400e-49 | 1.295133e-46 |
| MsG0680030380.01 | MsG0680034974.01 | 0.840803 | 6.975985e-58 | 1.005049e-54 |
| MsG0680030380.01 | MsG0680034978.01 | 0.800288 | 1.546383e-48 | 7.173156e-46 |
| MsG0680030380.01 | MsG0780035932.01 | 0.800020 | 1.753129e-48 | 8.076788e-46 |
| MsG0680030380.01 | MsG0780036208.01 | 0.811968 | 5.368802e-51 | 3.370356e-48 |
| MsG0680030380.01 | MsG0780036376.01 | 0.804319 | 2.287224e-49 | 1.175676e-46 |
| MsG0680030380.01 | MsG0780036649.01 | 0.805523 | 1.281066e-49 | 6.792164e-47 |
| MsG0680030380.01 | MsG0780036839.01 | 0.812019 | 5.233412e-51 | 3.289917e-48 |
| MsG0680030380.01 | MsG0780038519.01 | 0.802069 | 6.681254e-49 | 3.242245e-46 |
| MsG0680030380.01 | MsG0780040497.01 | 0.835804 | 1.355465e-56 | 1.675755e-53 |
| MsG0680030380.01 | MsG0780040615.01 | 0.803807 | 2.922137e-49 | 1.482424e-46 |
| MsG0680030380.01 | MsG0880043997.01 | 0.829250 | 5.717901e-55 | 5.820582e-52 |
| MsG0680030380.01 | MsG0880044026.01 | 0.822955 | 1.795691e-53 | 1.525230e-50 |
| MsG0680030380.01 | MsG0880046870.01 | 0.800469 | 1.420268e-48 | 6.618181e-46 |
| MsG0680030380.01 | MsG0880046961.01 | 0.811770 | 5.928710e-51 | 3.702180e-48 |
| MsG0680030380.01 | MsG0880047460.01 | 0.800281 | 1.551237e-48 | 7.194443e-46 |
| MsG0280007670.01 | MsG0680030380.01 | 0.826972 | 2.023163e-54 | 1.926813e-51 |
| MsG0280007677.01 | MsG0680030380.01 | 0.833044 | 6.685286e-56 | 7.609396e-53 |
| MsG0280007678.01 | MsG0680030380.01 | 0.806032 | 1.001603e-49 | 5.380476e-47 |
| MsG0280007869.01 | MsG0680030380.01 | 0.802959 | 4.379720e-49 | 2.174033e-46 |
| MsG0280010425.01 | MsG0680030380.01 | 0.800013 | 1.758399e-48 | 8.099669e-46 |
| MsG0280010515.01 | MsG0680030380.01 | 0.800561 | 1.360599e-48 | 6.354986e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004424.01 | MsG0680030380.01 | PPI |
| MsG0680030380.01 | MsG0680030379.01 | PPI |
| MsG0680030380.01 | MsG0480018692.01 | PPI |
| MsG0180003360.01 | MsG0680030380.01 | PPI |
| MsG0180003360.01 | MsG0680030380.01 | PPI |
| MsG0180003360.01 | MsG0680030380.01 | PPI |
| MsG0680030380.01 | MsG0380016838.01 | PPI |
| MsG0680030382.01 | MsG0680030380.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030380.01.T01 | MTR_6g005330 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 5.89e-156 | 431 |
| MsG0680030380.01.T01 | MTR_6g005360 | 95.000 | 220 | 11 | 0 | 1 | 220 | 1 | 220 | 4.70e-153 | 424 |
| MsG0680030380.01.T01 | MTR_6g005340 | 94.545 | 220 | 12 | 0 | 1 | 220 | 1 | 220 | 1.28e-151 | 420 |
| MsG0680030380.01.T01 | MTR_6g005310 | 94.977 | 219 | 11 | 0 | 1 | 219 | 1 | 219 | 1.59e-151 | 420 |
| MsG0680030380.01.T01 | MTR_1g079490 | 80.909 | 220 | 39 | 3 | 4 | 220 | 3 | 222 | 1.44e-125 | 354 |
| MsG0680030380.01.T01 | MTR_4g017040 | 76.471 | 221 | 51 | 1 | 1 | 220 | 1 | 221 | 1.34e-120 | 342 |
| MsG0680030380.01.T01 | MTR_2g019250 | 78.378 | 222 | 45 | 3 | 1 | 220 | 1 | 221 | 1.43e-120 | 341 |
| MsG0680030380.01.T01 | MTR_5g046410 | 77.928 | 222 | 46 | 3 | 1 | 220 | 1 | 221 | 2.88e-120 | 340 |
| MsG0680030380.01.T01 | MTR_5g046430 | 77.928 | 222 | 46 | 3 | 1 | 220 | 1 | 221 | 2.88e-120 | 340 |
| MsG0680030380.01.T01 | MTR_4g017030 | 77.928 | 222 | 46 | 3 | 1 | 220 | 1 | 221 | 2.88e-120 | 340 |
| MsG0680030380.01.T01 | MTR_4g017050 | 77.928 | 222 | 46 | 3 | 1 | 220 | 1 | 221 | 2.91e-120 | 340 |
| MsG0680030380.01.T01 | MTR_6g005350 | 75.909 | 220 | 52 | 1 | 1 | 220 | 1 | 219 | 5.26e-115 | 327 |
| MsG0680030380.01.T01 | MTR_6g005380 | 73.558 | 208 | 54 | 1 | 1 | 207 | 1 | 208 | 6.52e-106 | 304 |
| MsG0680030380.01.T01 | MTR_1g023770 | 63.819 | 199 | 62 | 2 | 19 | 215 | 19 | 209 | 2.19e-85 | 252 |
| MsG0680030380.01.T01 | MTR_2g030855 | 63.317 | 199 | 66 | 3 | 19 | 215 | 19 | 212 | 3.39e-83 | 246 |
| MsG0680030380.01.T01 | MTR_2g031270 | 63.000 | 200 | 66 | 4 | 19 | 215 | 19 | 213 | 1.53e-80 | 240 |
| MsG0680030380.01.T01 | MTR_2g030895 | 65.698 | 172 | 56 | 2 | 47 | 215 | 7 | 178 | 3.32e-76 | 228 |
| MsG0680030380.01.T01 | MTR_2g030865 | 65.698 | 172 | 56 | 2 | 47 | 215 | 7 | 178 | 7.99e-75 | 224 |
| MsG0680030380.01.T01 | MTR_2g031300 | 58.480 | 171 | 48 | 3 | 47 | 215 | 7 | 156 | 2.75e-60 | 186 |
| MsG0680030380.01.T01 | MTR_1g085500 | 46.667 | 210 | 102 | 4 | 11 | 214 | 8 | 213 | 7.26e-59 | 185 |
| MsG0680030380.01.T01 | MTR_7g111240 | 51.531 | 196 | 89 | 3 | 22 | 215 | 20 | 211 | 4.19e-57 | 180 |
| MsG0680030380.01.T01 | MTR_1g085140 | 48.500 | 200 | 97 | 3 | 18 | 215 | 20 | 215 | 8.32e-56 | 177 |
| MsG0680030380.01.T01 | MTR_7g111240 | 51.531 | 196 | 86 | 4 | 22 | 215 | 20 | 208 | 1.76e-54 | 173 |
| MsG0680030380.01.T01 | MTR_5g036570 | 47.208 | 197 | 97 | 4 | 22 | 215 | 27 | 219 | 3.39e-52 | 168 |
| MsG0680030380.01.T01 | MTR_1g112200 | 43.256 | 215 | 106 | 6 | 3 | 215 | 7 | 207 | 2.87e-48 | 157 |
| MsG0680030380.01.T01 | MTR_1g060120 | 38.914 | 221 | 124 | 5 | 2 | 215 | 5 | 221 | 2.44e-45 | 150 |
| MsG0680030380.01.T01 | MTR_8g020750 | 46.597 | 191 | 91 | 4 | 1 | 189 | 3 | 184 | 1.38e-44 | 148 |
| MsG0680030380.01.T01 | MTR_2g041550 | 45.455 | 187 | 94 | 4 | 28 | 212 | 23 | 203 | 2.69e-42 | 142 |
| MsG0680030380.01.T01 | MTR_2g041570 | 40.000 | 215 | 116 | 6 | 1 | 213 | 1 | 204 | 1.29e-37 | 130 |
| MsG0680030380.01.T01 | MTR_2g041580 | 40.187 | 214 | 115 | 6 | 1 | 212 | 1 | 203 | 1.36e-37 | 130 |
| MsG0680030380.01.T01 | MTR_8g020590 | 37.209 | 215 | 120 | 5 | 1 | 213 | 1 | 202 | 1.10e-35 | 125 |
| MsG0680030380.01.T01 | MTR_8g020630 | 37.788 | 217 | 121 | 6 | 1 | 215 | 1 | 205 | 3.01e-35 | 124 |
| MsG0680030380.01.T01 | MTR_8g007300 | 40.000 | 185 | 107 | 3 | 5 | 188 | 10 | 191 | 3.73e-35 | 124 |
| MsG0680030380.01.T01 | MTR_3g019710 | 38.498 | 213 | 117 | 5 | 4 | 215 | 6 | 205 | 1.93e-34 | 122 |
| MsG0680030380.01.T01 | MTR_8g020650 | 40.212 | 189 | 105 | 4 | 28 | 215 | 24 | 205 | 3.03e-34 | 121 |
| MsG0680030380.01.T01 | MTR_8g020770 | 38.462 | 221 | 115 | 6 | 1 | 215 | 3 | 208 | 7.42e-33 | 118 |
| MsG0680030380.01.T01 | MTR_2g036120 | 37.615 | 218 | 120 | 6 | 1 | 215 | 1 | 205 | 7.48e-33 | 118 |
| MsG0680030380.01.T01 | MTR_2g045100 | 39.791 | 191 | 107 | 4 | 26 | 215 | 22 | 205 | 9.26e-33 | 117 |
| MsG0680030380.01.T01 | MTR_3g019650 | 36.967 | 211 | 119 | 5 | 6 | 215 | 7 | 204 | 9.63e-33 | 117 |
| MsG0680030380.01.T01 | MTR_2g044040 | 37.156 | 218 | 121 | 6 | 1 | 215 | 1 | 205 | 3.65e-32 | 116 |
| MsG0680030380.01.T01 | MTR_3g019680 | 36.967 | 211 | 119 | 5 | 6 | 215 | 7 | 204 | 5.01e-32 | 115 |
| MsG0680030380.01.T01 | MTR_8g020670 | 37.696 | 191 | 111 | 4 | 26 | 215 | 22 | 205 | 2.82e-31 | 114 |
| MsG0680030380.01.T01 | MTR_8g020610 | 40.000 | 190 | 104 | 6 | 28 | 215 | 22 | 203 | 3.93e-31 | 113 |
| MsG0680030380.01.T01 | MTR_4g010340 | 38.947 | 190 | 107 | 5 | 27 | 215 | 20 | 201 | 8.16e-31 | 112 |
| MsG0680030380.01.T01 | MTR_8g020760 | 35.616 | 219 | 125 | 6 | 1 | 215 | 1 | 207 | 1.08e-29 | 110 |
| MsG0680030380.01.T01 | MTR_3g096330 | 34.884 | 215 | 133 | 4 | 1 | 211 | 553 | 764 | 1.63e-29 | 115 |
| MsG0680030380.01.T01 | MTR_2g019780 | 36.111 | 216 | 127 | 6 | 1 | 215 | 3 | 208 | 1.85e-29 | 109 |
| MsG0680030380.01.T01 | MTR_0284s0010 | 35.780 | 218 | 124 | 7 | 1 | 215 | 1 | 205 | 1.43e-28 | 107 |
| MsG0680030380.01.T01 | MTR_5g031460 | 34.101 | 217 | 129 | 6 | 1 | 215 | 1 | 205 | 4.98e-28 | 105 |
| MsG0680030380.01.T01 | MTR_7g011340 | 36.126 | 191 | 114 | 4 | 26 | 215 | 22 | 205 | 2.40e-27 | 103 |
| MsG0680030380.01.T01 | MTR_8g020763 | 36.000 | 175 | 105 | 3 | 43 | 215 | 17 | 186 | 3.50e-27 | 103 |
| MsG0680030380.01.T01 | MTR_4g052770 | 39.860 | 143 | 81 | 3 | 74 | 215 | 67 | 205 | 1.07e-26 | 102 |
| MsG0680030380.01.T01 | MTR_4g052780 | 39.860 | 143 | 81 | 3 | 74 | 215 | 67 | 205 | 1.76e-26 | 101 |
| MsG0680030380.01.T01 | MTR_2g086640 | 34.884 | 215 | 121 | 7 | 2 | 215 | 7 | 203 | 2.77e-26 | 101 |
| MsG0680030380.01.T01 | MTR_2g086620 | 35.294 | 221 | 112 | 9 | 2 | 215 | 8 | 204 | 3.86e-26 | 100 |
| MsG0680030380.01.T01 | MTR_2g086630 | 41.481 | 135 | 74 | 3 | 82 | 215 | 74 | 204 | 6.56e-26 | 100 |
| MsG0680030380.01.T01 | MTR_3g073170 | 35.602 | 191 | 109 | 6 | 28 | 215 | 27 | 206 | 1.02e-25 | 99.8 |
| MsG0680030380.01.T01 | MTR_2g030915 | 56.000 | 75 | 19 | 1 | 93 | 167 | 1 | 61 | 1.75e-20 | 82.8 |
| MsG0680030380.01.T01 | MTR_3g019810 | 34.031 | 191 | 108 | 7 | 1 | 189 | 107 | 281 | 6.14e-18 | 80.9 |
| MsG0680030380.01.T01 | MTR_4g027415 | 38.889 | 126 | 71 | 3 | 26 | 150 | 22 | 142 | 1.12e-16 | 74.3 |
| MsG0680030380.01.T01 | MTR_2g072560 | 41.346 | 104 | 58 | 2 | 18 | 120 | 14 | 115 | 1.13e-13 | 66.2 |
| MsG0680030380.01.T01 | MTR_3g019610 | 39.815 | 108 | 56 | 3 | 4 | 110 | 6 | 105 | 2.65e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030380.01.T01 | AT5G39120 | 64.352 | 216 | 74 | 2 | 3 | 215 | 4 | 219 | 1.67e-92 | 270 |
| MsG0680030380.01.T01 | AT5G39150 | 63.889 | 216 | 75 | 2 | 3 | 215 | 4 | 219 | 1.07e-91 | 268 |
| MsG0680030380.01.T01 | AT5G39180 | 63.889 | 216 | 75 | 2 | 3 | 215 | 4 | 219 | 1.89e-91 | 268 |
| MsG0680030380.01.T01 | AT5G38940 | 67.347 | 196 | 62 | 1 | 22 | 215 | 26 | 221 | 5.71e-91 | 266 |
| MsG0680030380.01.T01 | AT5G38940 | 67.347 | 196 | 62 | 1 | 22 | 215 | 50 | 245 | 1.12e-90 | 267 |
| MsG0680030380.01.T01 | AT5G39110 | 64.516 | 217 | 73 | 3 | 2 | 215 | 5 | 220 | 2.44e-90 | 265 |
| MsG0680030380.01.T01 | AT5G38930 | 67.677 | 198 | 62 | 1 | 20 | 215 | 24 | 221 | 4.09e-90 | 265 |
| MsG0680030380.01.T01 | AT5G39160 | 67.337 | 199 | 61 | 3 | 20 | 215 | 22 | 219 | 3.93e-89 | 262 |
| MsG0680030380.01.T01 | AT5G39190 | 67.337 | 199 | 61 | 3 | 20 | 215 | 22 | 219 | 5.40e-89 | 261 |
| MsG0680030380.01.T01 | AT3G05950 | 64.414 | 222 | 71 | 5 | 1 | 215 | 1 | 221 | 1.07e-88 | 261 |
| MsG0680030380.01.T01 | AT5G39130 | 66.332 | 199 | 63 | 3 | 20 | 215 | 22 | 219 | 1.78e-88 | 260 |
| MsG0680030380.01.T01 | AT5G38910 | 63.927 | 219 | 75 | 4 | 1 | 215 | 1 | 219 | 4.55e-88 | 259 |
| MsG0680030380.01.T01 | AT5G38960 | 65.174 | 201 | 67 | 2 | 18 | 215 | 22 | 222 | 9.68e-88 | 258 |
| MsG0680030380.01.T01 | AT4G14630 | 64.824 | 199 | 67 | 2 | 20 | 215 | 24 | 222 | 3.91e-85 | 252 |
| MsG0680030380.01.T01 | AT5G39160 | 64.824 | 199 | 62 | 3 | 20 | 215 | 22 | 215 | 2.17e-84 | 249 |
| MsG0680030380.01.T01 | AT3G04200 | 65.550 | 209 | 67 | 4 | 11 | 215 | 15 | 222 | 5.01e-83 | 246 |
| MsG0680030380.01.T01 | AT3G04150 | 57.207 | 222 | 87 | 5 | 1 | 215 | 1 | 221 | 1.70e-75 | 228 |
| MsG0680030380.01.T01 | AT5G39190 | 60.406 | 197 | 56 | 2 | 20 | 215 | 22 | 197 | 6.90e-75 | 225 |
| MsG0680030380.01.T01 | AT3G04150 | 54.701 | 234 | 87 | 5 | 1 | 215 | 1 | 234 | 1.43e-74 | 226 |
| MsG0680030380.01.T01 | AT5G39160 | 59.898 | 197 | 57 | 2 | 20 | 215 | 22 | 197 | 1.69e-74 | 224 |
| MsG0680030380.01.T01 | AT3G04190 | 58.333 | 204 | 81 | 3 | 15 | 215 | 19 | 221 | 1.03e-72 | 220 |
| MsG0680030380.01.T01 | AT3G04170 | 55.405 | 222 | 88 | 6 | 1 | 215 | 1 | 218 | 1.10e-70 | 215 |
| MsG0680030380.01.T01 | AT3G04180 | 55.392 | 204 | 87 | 3 | 15 | 215 | 19 | 221 | 4.18e-69 | 211 |
| MsG0680030380.01.T01 | AT5G38910 | 52.055 | 219 | 64 | 5 | 1 | 215 | 1 | 182 | 1.62e-61 | 191 |
| MsG0680030380.01.T01 | AT3G62020 | 48.113 | 212 | 103 | 4 | 7 | 215 | 8 | 215 | 2.46e-57 | 181 |
| MsG0680030380.01.T01 | AT1G09560 | 49.746 | 197 | 93 | 3 | 22 | 216 | 24 | 216 | 7.64e-57 | 180 |
| MsG0680030380.01.T01 | AT1G02335 | 47.475 | 198 | 98 | 3 | 20 | 215 | 22 | 215 | 2.29e-56 | 179 |
| MsG0680030380.01.T01 | AT1G18970 | 45.662 | 219 | 108 | 5 | 1 | 217 | 11 | 220 | 4.29e-56 | 178 |
| MsG0680030380.01.T01 | AT1G18980 | 47.248 | 218 | 101 | 6 | 7 | 217 | 10 | 220 | 7.39e-55 | 175 |
| MsG0680030380.01.T01 | AT3G05930 | 45.116 | 215 | 110 | 4 | 4 | 215 | 6 | 215 | 5.59e-54 | 172 |
| MsG0680030380.01.T01 | AT5G26700 | 46.411 | 209 | 93 | 6 | 11 | 215 | 16 | 209 | 1.54e-52 | 169 |
| MsG0680030380.01.T01 | AT1G10460 | 42.714 | 199 | 107 | 5 | 22 | 215 | 19 | 215 | 7.34e-49 | 159 |
| MsG0680030380.01.T01 | AT3G62020 | 48.889 | 180 | 87 | 3 | 39 | 215 | 9 | 186 | 8.71e-49 | 158 |
| MsG0680030380.01.T01 | AT3G10080 | 41.872 | 203 | 106 | 5 | 19 | 215 | 23 | 219 | 4.02e-44 | 147 |
| MsG0680030380.01.T01 | AT3G10080 | 41.176 | 204 | 108 | 5 | 18 | 215 | 93 | 290 | 2.26e-43 | 147 |
| MsG0680030380.01.T01 | AT5G20630 | 41.885 | 191 | 101 | 4 | 1 | 189 | 1 | 183 | 6.13e-40 | 136 |
| MsG0680030380.01.T01 | AT5G61750 | 41.935 | 186 | 98 | 4 | 4 | 187 | 6 | 183 | 2.80e-38 | 132 |
| MsG0680030380.01.T01 | AT1G74820 | 38.605 | 215 | 116 | 5 | 11 | 215 | 17 | 225 | 2.55e-37 | 130 |
| MsG0680030380.01.T01 | AT1G72610 | 38.624 | 189 | 108 | 4 | 26 | 212 | 19 | 201 | 9.16e-33 | 118 |
| MsG0680030380.01.T01 | AT5G38950 | 60.563 | 71 | 28 | 0 | 144 | 214 | 2 | 72 | 1.70e-21 | 85.9 |
| MsG0680030380.01.T01 | AT5G39100 | 65.455 | 55 | 18 | 1 | 2 | 56 | 5 | 58 | 5.13e-16 | 70.1 |
Find 47 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGCTAATGCTGTATT+TGG | 0.046653 | 6:+1338901 | MsG0680030380.01.T01:CDS |
| TAGTAATAACACCTGGATTT+TGG | 0.212711 | 6:-1338882 | None:intergenic |
| AGAACTTCTGAAGAGATCTT+TGG | 0.268181 | 6:-1338931 | None:intergenic |
| ATTATCCACTTGAAAAGCTT+TGG | 0.360291 | 6:-1338956 | None:intergenic |
| GGAAATGCAGTTGCCATTGC+TGG | 0.378013 | 6:+1338850 | MsG0680030380.01.T01:CDS |
| TCGTTTGCTGTAGCAAGCTT+TGG | 0.401677 | 6:-1338511 | None:intergenic |
| TTCCATACCCCACATTCAAT+TGG | 0.409845 | 6:-1338831 | None:intergenic |
| TGGAAGTGAATGAGACCAAT+TGG | 0.411740 | 6:-1338811 | None:intergenic |
| CTATTGCTAATGCTGTATTT+GGG | 0.423500 | 6:+1338902 | MsG0680030380.01.T01:CDS |
| AGTATCTCATTAACAGTAAC+CGG | 0.431864 | 6:-1338592 | None:intergenic |
| TTTCACAGCCTTCTTAGCAT+TGG | 0.455174 | 6:+1338207 | MsG0680030380.01.T01:CDS |
| GATGTGTTTGTGTTTCCAAT+TGG | 0.465821 | 6:+1338796 | MsG0680030380.01.T01:CDS |
| TTCTTCTACTCGGTGAAAGA+AGG | 0.467010 | 6:+1338535 | MsG0680030380.01.T01:CDS |
| ATAAGAATCTCAGTAGCTCT+AGG | 0.469422 | 6:-1338691 | None:intergenic |
| CAAAAGTCTTGTAGAGGGCT+AGG | 0.473790 | 6:-1338253 | None:intergenic |
| TGAGATTCTTATAGTGTTGG+AGG | 0.478695 | 6:+1338702 | MsG0680030380.01.T01:CDS |
| TCGTATTGACTTCGCTGCTA+GGG | 0.481443 | 6:+1338645 | MsG0680030380.01.T01:CDS |
| AGTATACATACCACCGGTCT+TGG | 0.500629 | 6:-1338293 | None:intergenic |
| CTCGTATTGACTTCGCTGCT+AGG | 0.501926 | 6:+1338644 | MsG0680030380.01.T01:CDS |
| ACAAGATGCCAATGCTAAGA+AGG | 0.503312 | 6:-1338215 | None:intergenic |
| TTCCAATTGAATGTGGGGTA+TGG | 0.505417 | 6:+1338829 | MsG0680030380.01.T01:CDS |
| TACTGAGATTCTTATAGTGT+TGG | 0.510386 | 6:+1338699 | MsG0680030380.01.T01:CDS |
| CATTCACTTCCAATTGAATG+TGG | 0.512147 | 6:+1338822 | MsG0680030380.01.T01:CDS |
| TGGAGGGTACTCTCTATGTC+GGG | 0.514884 | 6:+1338719 | MsG0680030380.01.T01:CDS |
| TTGGAGGGTACTCTCTATGT+CGG | 0.525841 | 6:+1338718 | MsG0680030380.01.T01:CDS |
| ATTCACTTCCAATTGAATGT+GGG | 0.537723 | 6:+1338823 | MsG0680030380.01.T01:CDS |
| GGACTTAGCAGCCAAAATCC+AGG | 0.549743 | 6:+1338871 | MsG0680030380.01.T01:CDS |
| TTCACTTCCAATTGAATGTG+GGG | 0.551943 | 6:+1338824 | MsG0680030380.01.T01:CDS |
| GTAGCTCTAGGGTGAGTATG+TGG | 0.564452 | 6:-1338679 | None:intergenic |
| ATACTAGGACTAAACACTCT+AGG | 0.572011 | 6:+1338610 | MsG0680030380.01.T01:CDS |
| AGCAAACGATTTCTTCTACT+CGG | 0.574156 | 6:+1338525 | MsG0680030380.01.T01:CDS |
| TAAGAATCTCAGTAGCTCTA+GGG | 0.576817 | 6:-1338690 | None:intergenic |
| GTTACTGTTAATGAGATACT+AGG | 0.582511 | 6:+1338595 | MsG0680030380.01.T01:CDS |
| TGTGAATGGCAAATTCTGCA+AGG | 0.584711 | 6:+1338486 | MsG0680030380.01.T01:CDS |
| CGTATTGACTTCGCTGCTAG+GGG | 0.590600 | 6:+1338646 | MsG0680030380.01.T01:CDS |
| GAGATTCTTATAGTGTTGGA+GGG | 0.592161 | 6:+1338703 | MsG0680030380.01.T01:CDS |
| TTGGCTGCTAAGTCCAGCAA+TGG | 0.600072 | 6:-1338863 | None:intergenic |
| GCAATCAATGACACCAAGAC+CGG | 0.602384 | 6:+1338280 | MsG0680030380.01.T01:CDS |
| GCCACACAAAAGTCTTGTAG+AGG | 0.609133 | 6:-1338259 | None:intergenic |
| GGAAATACATCAAATCCACT+TGG | 0.640192 | 6:+1338556 | MsG0680030380.01.T01:CDS |
| ATCACAAAAGTACTCAACAA+AGG | 0.644517 | 6:+1338772 | MsG0680030380.01.T01:CDS |
| CCACACAAAAGTCTTGTAGA+GGG | 0.655758 | 6:-1338258 | None:intergenic |
| ATCAATGACACCAAGACCGG+TGG | 0.659585 | 6:+1338283 | MsG0680030380.01.T01:CDS |
| AGGGCTAGGATCAAATGCAA+AGG | 0.662548 | 6:-1338239 | None:intergenic |
| ACTTGGTTCAAAAGTGACAC+CGG | 0.669513 | 6:+1338573 | MsG0680030380.01.T01:CDS |
| GCTCTAGGGTGAGTATGTGG+AGG | 0.686535 | 6:-1338676 | None:intergenic |
| TTAGCAATAGTAATAACACC+TGG | 0.687379 | 6:-1338889 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATCTTCAAAAACAATTT+TGG | + | Chr6:1338989-1339008 | MsG0680030380.01.T01:CDS | 20.0% |
| !!! | CAATCTTCAAAAACAATTTT+GGG | + | Chr6:1338990-1339009 | MsG0680030380.01.T01:CDS | 20.0% |
| !!! | TTTATTTATTTTGACTCGTT+TGG | + | Chr6:1338333-1338352 | MsG0680030380.01.T01:intron | 20.0% |
| ! | ACTATGATACAAAAGTTTCA+CGG | + | Chr6:1338377-1338396 | MsG0680030380.01.T01:intron | 25.0% |
| !! | CTTTTGTATCATAGTTCAAT+TGG | - | Chr6:1338372-1338391 | None:intergenic | 25.0% |
| !! | TTAAAAAGTATACATACCAC+CGG | - | Chr6:1338302-1338321 | None:intergenic | 25.0% |
| ACTATTGCTAATGCTGTATT+TGG | + | Chr6:1338901-1338920 | MsG0680030380.01.T01:CDS | 30.0% | |
| AGTATCTCATTAACAGTAAC+CGG | - | Chr6:1338595-1338614 | None:intergenic | 30.0% | |
| ATTATCCACTTGAAAAGCTT+TGG | - | Chr6:1338959-1338978 | None:intergenic | 30.0% | |
| ATTCACTTCCAATTGAATGT+GGG | + | Chr6:1338823-1338842 | MsG0680030380.01.T01:CDS | 30.0% | |
| CTATTGCTAATGCTGTATTT+GGG | + | Chr6:1338902-1338921 | MsG0680030380.01.T01:CDS | 30.0% | |
| GTTACTGTTAATGAGATACT+AGG | + | Chr6:1338595-1338614 | MsG0680030380.01.T01:CDS | 30.0% | |
| TACTGAGATTCTTATAGTGT+TGG | + | Chr6:1338699-1338718 | MsG0680030380.01.T01:CDS | 30.0% | |
| TTAGCAATAGTAATAACACC+TGG | - | Chr6:1338892-1338911 | None:intergenic | 30.0% | |
| ! | TAGTAATAACACCTGGATTT+TGG | - | Chr6:1338885-1338904 | None:intergenic | 30.0% |
| ! | TCTTCAAAAACAATTTTGGG+TGG | + | Chr6:1338993-1339012 | MsG0680030380.01.T01:CDS | 30.0% |
| ! | TGTTTTGCAGTTTTTGTGAA+TGG | + | Chr6:1338472-1338491 | MsG0680030380.01.T01:intron | 30.0% |
| !! | ATCACAAAAGTACTCAACAA+AGG | + | Chr6:1338772-1338791 | MsG0680030380.01.T01:CDS | 30.0% |
| AGCAAACGATTTCTTCTACT+CGG | + | Chr6:1338525-1338544 | MsG0680030380.01.T01:CDS | 35.0% | |
| ATAAGAATCTCAGTAGCTCT+AGG | - | Chr6:1338694-1338713 | None:intergenic | 35.0% | |
| ATACTAGGACTAAACACTCT+AGG | + | Chr6:1338610-1338629 | MsG0680030380.01.T01:CDS | 35.0% | |
| CATTCACTTCCAATTGAATG+TGG | + | Chr6:1338822-1338841 | MsG0680030380.01.T01:CDS | 35.0% | |
| GATGTGTTTGTGTTTCCAAT+TGG | + | Chr6:1338796-1338815 | MsG0680030380.01.T01:CDS | 35.0% | |
| GGAAATACATCAAATCCACT+TGG | + | Chr6:1338556-1338575 | MsG0680030380.01.T01:CDS | 35.0% | |
| TTCACTTCCAATTGAATGTG+GGG | + | Chr6:1338824-1338843 | MsG0680030380.01.T01:CDS | 35.0% | |
| ! | AGAACTTCTGAAGAGATCTT+TGG | - | Chr6:1338934-1338953 | None:intergenic | 35.0% |
| ! | GAGATTCTTATAGTGTTGGA+GGG | + | Chr6:1338703-1338722 | MsG0680030380.01.T01:CDS | 35.0% |
| ! | TAAGAATCTCAGTAGCTCTA+GGG | - | Chr6:1338693-1338712 | None:intergenic | 35.0% |
| ! | TGAGATTCTTATAGTGTTGG+AGG | + | Chr6:1338702-1338721 | MsG0680030380.01.T01:CDS | 35.0% |
| ! | TGAGTACTTTTGTGATGAGA+CGG | - | Chr6:1338768-1338787 | None:intergenic | 35.0% |
| ACAAGATGCCAATGCTAAGA+AGG | - | Chr6:1338218-1338237 | None:intergenic | 40.0% | |
| ACTTGGTTCAAAAGTGACAC+CGG | + | Chr6:1338573-1338592 | MsG0680030380.01.T01:CDS | 40.0% | |
| TGGAAGTGAATGAGACCAAT+TGG | - | Chr6:1338814-1338833 | None:intergenic | 40.0% | |
| TGTGAATGGCAAATTCTGCA+AGG | + | Chr6:1338486-1338505 | MsG0680030380.01.T01:CDS | 40.0% | |
| TTCCAATTGAATGTGGGGTA+TGG | + | Chr6:1338829-1338848 | MsG0680030380.01.T01:CDS | 40.0% | |
| TTCCATACCCCACATTCAAT+TGG | - | Chr6:1338834-1338853 | None:intergenic | 40.0% | |
| TTTCACAGCCTTCTTAGCAT+TGG | + | Chr6:1338207-1338226 | MsG0680030380.01.T01:CDS | 40.0% | |
| ! | CCACACAAAAGTCTTGTAGA+GGG | - | Chr6:1338261-1338280 | None:intergenic | 40.0% |
| ! | TTCTTCTACTCGGTGAAAGA+AGG | + | Chr6:1338535-1338554 | MsG0680030380.01.T01:CDS | 40.0% |
| ! | TTTGTGATGAGACGGTTTTC+TGG | - | Chr6:1338760-1338779 | None:intergenic | 40.0% |
| !! | TCTCACCAAAGCTTTTCAAG+TGG | + | Chr6:1338951-1338970 | MsG0680030380.01.T01:CDS | 40.0% |
| AGGGCTAGGATCAAATGCAA+AGG | - | Chr6:1338242-1338261 | None:intergenic | 45.0% | |
| AGTATACATACCACCGGTCT+TGG | - | Chr6:1338296-1338315 | None:intergenic | 45.0% | |
| GCAATCAATGACACCAAGAC+CGG | + | Chr6:1338280-1338299 | MsG0680030380.01.T01:CDS | 45.0% | |
| ! | CAAAAGTCTTGTAGAGGGCT+AGG | - | Chr6:1338256-1338275 | None:intergenic | 45.0% |
| ! | CCCTCTACAAGACTTTTGTG+TGG | + | Chr6:1338258-1338277 | MsG0680030380.01.T01:CDS | 45.0% |
| ! | GCCACACAAAAGTCTTGTAG+AGG | - | Chr6:1338262-1338281 | None:intergenic | 45.0% |
| !! | TCGTATTGACTTCGCTGCTA+GGG | + | Chr6:1338645-1338664 | MsG0680030380.01.T01:CDS | 45.0% |
| !! | TCGTTTGCTGTAGCAAGCTT+TGG | - | Chr6:1338514-1338533 | None:intergenic | 45.0% |
| !! | TTGGAGGGTACTCTCTATGT+CGG | + | Chr6:1338718-1338737 | MsG0680030380.01.T01:CDS | 45.0% |
| !!! | GGTGTCACTTTTGAACCAAG+TGG | - | Chr6:1338574-1338593 | None:intergenic | 45.0% |
| ATCAATGACACCAAGACCGG+TGG | + | Chr6:1338283-1338302 | MsG0680030380.01.T01:CDS | 50.0% | |
| GGAAATGCAGTTGCCATTGC+TGG | + | Chr6:1338850-1338869 | MsG0680030380.01.T01:CDS | 50.0% | |
| GGACTTAGCAGCCAAAATCC+AGG | + | Chr6:1338871-1338890 | MsG0680030380.01.T01:CDS | 50.0% | |
| TTGGCTGCTAAGTCCAGCAA+TGG | - | Chr6:1338866-1338885 | None:intergenic | 50.0% | |
| !! | CGTATTGACTTCGCTGCTAG+GGG | + | Chr6:1338646-1338665 | MsG0680030380.01.T01:CDS | 50.0% |
| !! | CTCGTATTGACTTCGCTGCT+AGG | + | Chr6:1338644-1338663 | MsG0680030380.01.T01:CDS | 50.0% |
| !! | GTAGCTCTAGGGTGAGTATG+TGG | - | Chr6:1338682-1338701 | None:intergenic | 50.0% |
| !! | TGGAGGGTACTCTCTATGTC+GGG | + | Chr6:1338719-1338738 | MsG0680030380.01.T01:CDS | 50.0% |
| !! | GCTCTAGGGTGAGTATGTGG+AGG | - | Chr6:1338679-1338698 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 1338187 | 1339026 | 1338187 | ID=MsG0680030380.01;Name=MsG0680030380.01 |
| Chr6 | mRNA | 1338187 | 1339026 | 1338187 | ID=MsG0680030380.01.T01;Parent=MsG0680030380.01;Name=MsG0680030380.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|220 |
| Chr6 | exon | 1338187 | 1338304 | 1338187 | ID=MsG0680030380.01.T01:exon:2527;Parent=MsG0680030380.01.T01 |
| Chr6 | exon | 1338482 | 1339026 | 1338482 | ID=MsG0680030380.01.T01:exon:2528;Parent=MsG0680030380.01.T01 |
| Chr6 | CDS | 1338187 | 1338304 | 1338187 | ID=MsG0680030380.01.T01:cds;Parent=MsG0680030380.01.T01 |
| Chr6 | CDS | 1338482 | 1339026 | 1338482 | ID=MsG0680030380.01.T01:cds;Parent=MsG0680030380.01.T01 |
| Gene Sequence |
| Protein sequence |
