Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030382.01.T01 | XP_003618167.1 | 96.364 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 1.31E-151 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030382.01.T01 | Q6K5Q0 | 66.055 | 218 | 69 | 3 | 1 | 215 | 1 | 216 | 5.85E-93 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030382.01.T01 | G7KQ20 | 96.364 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 6.24e-152 | 430 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001029.01 | MsG0680030382.01 | 0.801189 | 1.012765e-48 | 4.806335e-46 |
| MsG0180001513.01 | MsG0680030382.01 | 0.804915 | 1.717279e-49 | 8.964939e-47 |
| MsG0180001515.01 | MsG0680030382.01 | 0.814460 | 1.523088e-51 | 1.022617e-48 |
| MsG0180001800.01 | MsG0680030382.01 | 0.811433 | 7.019009e-51 | 4.344281e-48 |
| MsG0180003237.01 | MsG0680030382.01 | 0.818403 | 1.995907e-52 | 1.492699e-49 |
| MsG0180003484.01 | MsG0680030382.01 | 0.820397 | 7.010130e-53 | 5.540760e-50 |
| MsG0180005130.01 | MsG0680030382.01 | 0.811969 | 5.365282e-51 | 3.368276e-48 |
| MsG0180005143.01 | MsG0680030382.01 | 0.811495 | 6.803640e-51 | 4.218038e-48 |
| MsG0280010936.01 | MsG0680030382.01 | 0.805981 | 1.026674e-49 | 5.508171e-47 |
| MsG0380013212.01 | MsG0680030382.01 | 0.825957 | 3.530742e-54 | 3.266259e-51 |
| MsG0380013213.01 | MsG0680030382.01 | 0.818022 | 2.434220e-52 | 1.801308e-49 |
| MsG0380013226.01 | MsG0680030382.01 | 0.803371 | 3.599024e-49 | 1.805425e-46 |
| MsG0380014344.01 | MsG0680030382.01 | 0.804541 | 2.056203e-49 | 1.062966e-46 |
| MsG0480018617.01 | MsG0680030382.01 | 0.813895 | 2.029987e-51 | 1.342243e-48 |
| MsG0480018692.01 | MsG0680030382.01 | 0.854012 | 1.633550e-61 | 3.597752e-58 |
| MsG0480018693.01 | MsG0680030382.01 | 0.856957 | 2.264205e-62 | 5.497878e-59 |
| MsG0480018697.01 | MsG0680030382.01 | 0.854859 | 9.294782e-62 | 2.105111e-58 |
| MsG0480019146.01 | MsG0680030382.01 | 0.804105 | 2.534540e-49 | 1.295680e-46 |
| MsG0480019164.01 | MsG0680030382.01 | 0.817718 | 2.850833e-52 | 2.092164e-49 |
| MsG0480019325.01 | MsG0680030382.01 | 0.801291 | 9.652256e-49 | 4.592538e-46 |
| MsG0480019346.01 | MsG0680030382.01 | 0.856097 | 4.048985e-62 | 9.555322e-59 |
| MsG0480019348.01 | MsG0680030382.01 | 0.852696 | 3.897526e-61 | 8.212109e-58 |
| MsG0480020539.01 | MsG0680030382.01 | 0.804603 | 1.995236e-49 | 1.033146e-46 |
| MsG0480021133.01 | MsG0680030382.01 | 0.803604 | 3.219924e-49 | 1.625078e-46 |
| MsG0580024086.01 | MsG0680030382.01 | 0.817988 | 2.477940e-52 | 1.831957e-49 |
| MsG0580024649.01 | MsG0680030382.01 | 0.812800 | 3.532600e-51 | 2.267414e-48 |
| MsG0580025965.01 | MsG0680030382.01 | 0.833435 | 5.342475e-56 | 6.152092e-53 |
| MsG0380015659.01 | MsG0680030382.01 | 0.841655 | 4.166552e-58 | 6.163262e-55 |
| MsG0380015711.01 | MsG0680030382.01 | 0.803193 | 3.917608e-49 | 1.956385e-46 |
| MsG0380016299.01 | MsG0680030382.01 | 0.804574 | 2.023934e-49 | 1.047192e-46 |
| MsG0580027751.01 | MsG0680030382.01 | 0.858547 | 7.644431e-63 | 1.958100e-59 |
| MsG0580027752.01 | MsG0680030382.01 | 0.849317 | 3.494113e-60 | 6.598574e-57 |
| MsG0580027753.01 | MsG0680030382.01 | 0.857801 | 1.274638e-62 | 3.183984e-59 |
| MsG0580027776.01 | MsG0680030382.01 | 0.802605 | 5.183489e-49 | 2.549902e-46 |
| MsG0580029291.01 | MsG0680030382.01 | 0.816430 | 5.554046e-52 | 3.934405e-49 |
| MsG0580029938.01 | MsG0680030382.01 | 0.823375 | 1.433220e-53 | 1.231724e-50 |
| MsG0680030379.01 | MsG0680030382.01 | 0.898222 | 6.552299e-77 | 7.673310e-73 |
| MsG0680030380.01 | MsG0680030382.01 | 0.896996 | 2.156924e-76 | 2.389454e-72 |
| MsG0680030382.01 | MsG0680032026.01 | 0.820766 | 5.766827e-53 | 4.604799e-50 |
| MsG0680030382.01 | MsG0680032461.01 | 0.832546 | 8.887524e-56 | 9.965977e-53 |
| MsG0680030382.01 | MsG0680034974.01 | 0.825774 | 3.901708e-54 | 3.590703e-51 |
| MsG0680030382.01 | MsG0680034978.01 | 0.814445 | 1.534790e-51 | 1.030038e-48 |
| MsG0680030382.01 | MsG0780035932.01 | 0.831098 | 2.023877e-55 | 2.174178e-52 |
| MsG0680030382.01 | MsG0780036376.01 | 0.816025 | 6.840874e-52 | 4.792985e-49 |
| MsG0680030382.01 | MsG0780036649.01 | 0.827766 | 1.304929e-54 | 1.271809e-51 |
| MsG0680030382.01 | MsG0780036839.01 | 0.810268 | 1.254246e-50 | 7.526532e-48 |
| MsG0680030382.01 | MsG0780038519.01 | 0.806517 | 7.914741e-50 | 4.304637e-47 |
| MsG0680030382.01 | MsG0780040497.01 | 0.807891 | 4.051077e-50 | 2.283040e-47 |
| MsG0680030382.01 | MsG0780040615.01 | 0.802881 | 4.546421e-49 | 2.252320e-46 |
| MsG0680030382.01 | MsG0880042261.01 | 0.819587 | 1.074059e-52 | 8.299941e-50 |
| MsG0680030382.01 | MsG0880043459.01 | 0.805093 | 1.576694e-49 | 8.267866e-47 |
| MsG0680030382.01 | MsG0880043997.01 | 0.824411 | 8.190023e-54 | 7.248271e-51 |
| MsG0680030382.01 | MsG0880044001.01 | 0.800036 | 1.740245e-48 | 8.020587e-46 |
| MsG0680030382.01 | MsG0880044026.01 | 0.836611 | 8.452842e-57 | 1.070695e-53 |
| MsG0680030382.01 | MsG0880045801.01 | 0.802315 | 5.948469e-49 | 2.904918e-46 |
| MsG0680030382.01 | MsG0880046166.01 | 0.802329 | 5.907982e-49 | 2.886129e-46 |
| MsG0680030382.01 | MsG0880046870.01 | 0.806980 | 6.320605e-50 | 3.478804e-47 |
| MsG0680030382.01 | MsG0880046923.01 | 0.810347 | 1.205815e-50 | 7.251002e-48 |
| MsG0680030382.01 | MsG0880047460.01 | 0.800750 | 1.244998e-48 | 5.842950e-46 |
| MsG0280007602.01 | MsG0680030382.01 | 0.812307 | 4.527335e-51 | 2.868477e-48 |
| MsG0280007670.01 | MsG0680030382.01 | 0.807114 | 5.920349e-50 | 3.269749e-47 |
| MsG0280007677.01 | MsG0680030382.01 | 0.833077 | 6.559202e-56 | 7.473417e-53 |
| MsG0280007678.01 | MsG0680030382.01 | 0.825593 | 4.308003e-54 | 3.944041e-51 |
| MsG0280007869.01 | MsG0680030382.01 | 0.819474 | 1.139562e-52 | 8.778437e-50 |
| MsG0280008178.01 | MsG0680030382.01 | 0.821178 | 4.634777e-53 | 3.743684e-50 |
| MsG0280010425.01 | MsG0680030382.01 | 0.813653 | 2.295390e-51 | 1.507790e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004424.01 | MsG0680030382.01 | PPI |
| MsG0680030382.01 | MsG0680030379.01 | PPI |
| MsG0680030382.01 | MsG0180003360.01 | PPI |
| MsG0680030382.01 | MsG0180003360.01 | PPI |
| MsG0680030382.01 | MsG0380016838.01 | PPI |
| MsG0680030382.01 | MsG0480018692.01 | PPI |
| MsG0180003360.01 | MsG0680030382.01 | PPI |
| MsG0680030382.01 | MsG0680030380.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030382.01.T01 | MTR_6g005360 | 96.364 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 1.58e-155 | 430 |
| MsG0680030382.01.T01 | MTR_6g005310 | 96.804 | 219 | 7 | 0 | 1 | 219 | 1 | 219 | 5.65e-155 | 428 |
| MsG0680030382.01.T01 | MTR_6g005340 | 96.364 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 7.11e-155 | 428 |
| MsG0680030382.01.T01 | MTR_6g005330 | 95.000 | 220 | 11 | 0 | 1 | 220 | 1 | 220 | 4.86e-153 | 423 |
| MsG0680030382.01.T01 | MTR_1g079490 | 81.279 | 219 | 38 | 3 | 5 | 220 | 4 | 222 | 2.46e-125 | 353 |
| MsG0680030382.01.T01 | MTR_4g017040 | 76.923 | 221 | 50 | 1 | 1 | 220 | 1 | 221 | 4.99e-121 | 342 |
| MsG0680030382.01.T01 | MTR_2g019250 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 4.67e-120 | 340 |
| MsG0680030382.01.T01 | MTR_4g017050 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 6.85e-120 | 340 |
| MsG0680030382.01.T01 | MTR_5g046410 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 6.93e-120 | 340 |
| MsG0680030382.01.T01 | MTR_5g046430 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 6.93e-120 | 340 |
| MsG0680030382.01.T01 | MTR_4g017030 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 6.93e-120 | 340 |
| MsG0680030382.01.T01 | MTR_6g005350 | 74.545 | 220 | 55 | 1 | 1 | 220 | 1 | 219 | 4.59e-113 | 322 |
| MsG0680030382.01.T01 | MTR_6g005380 | 72.115 | 208 | 57 | 1 | 1 | 207 | 1 | 208 | 1.28e-104 | 301 |
| MsG0680030382.01.T01 | MTR_2g030855 | 63.819 | 199 | 65 | 3 | 19 | 215 | 19 | 212 | 5.29e-84 | 248 |
| MsG0680030382.01.T01 | MTR_1g023770 | 62.814 | 199 | 64 | 2 | 19 | 215 | 19 | 209 | 8.63e-84 | 248 |
| MsG0680030382.01.T01 | MTR_2g031270 | 63.500 | 200 | 65 | 4 | 19 | 215 | 19 | 213 | 2.23e-81 | 242 |
| MsG0680030382.01.T01 | MTR_2g030895 | 65.698 | 172 | 56 | 2 | 47 | 215 | 7 | 178 | 3.95e-76 | 227 |
| MsG0680030382.01.T01 | MTR_2g030865 | 65.698 | 172 | 56 | 2 | 47 | 215 | 7 | 178 | 1.16e-74 | 224 |
| MsG0680030382.01.T01 | MTR_2g031300 | 60.625 | 160 | 41 | 2 | 47 | 204 | 7 | 146 | 8.37e-60 | 185 |
| MsG0680030382.01.T01 | MTR_1g085500 | 46.667 | 210 | 102 | 4 | 11 | 214 | 8 | 213 | 1.46e-58 | 184 |
| MsG0680030382.01.T01 | MTR_7g111240 | 51.020 | 196 | 90 | 3 | 22 | 215 | 20 | 211 | 2.26e-56 | 178 |
| MsG0680030382.01.T01 | MTR_1g085140 | 48.000 | 200 | 98 | 3 | 18 | 215 | 20 | 215 | 1.86e-55 | 176 |
| MsG0680030382.01.T01 | MTR_7g111240 | 50.510 | 196 | 88 | 3 | 22 | 215 | 20 | 208 | 6.13e-54 | 172 |
| MsG0680030382.01.T01 | MTR_5g036570 | 48.223 | 197 | 95 | 4 | 22 | 215 | 27 | 219 | 4.75e-53 | 170 |
| MsG0680030382.01.T01 | MTR_1g112200 | 42.326 | 215 | 108 | 6 | 3 | 215 | 7 | 207 | 1.22e-47 | 156 |
| MsG0680030382.01.T01 | MTR_1g060120 | 38.462 | 221 | 125 | 5 | 2 | 215 | 5 | 221 | 2.33e-44 | 148 |
| MsG0680030382.01.T01 | MTR_2g041550 | 44.920 | 187 | 95 | 4 | 28 | 212 | 23 | 203 | 2.50e-42 | 142 |
| MsG0680030382.01.T01 | MTR_8g020750 | 47.337 | 169 | 75 | 4 | 27 | 189 | 24 | 184 | 4.49e-42 | 142 |
| MsG0680030382.01.T01 | MTR_2g041580 | 38.785 | 214 | 116 | 5 | 1 | 212 | 3 | 203 | 1.85e-38 | 132 |
| MsG0680030382.01.T01 | MTR_2g041570 | 38.605 | 215 | 117 | 5 | 1 | 213 | 3 | 204 | 1.85e-38 | 132 |
| MsG0680030382.01.T01 | MTR_8g020590 | 39.474 | 190 | 107 | 4 | 26 | 213 | 19 | 202 | 7.55e-35 | 123 |
| MsG0680030382.01.T01 | MTR_8g007300 | 40.782 | 179 | 102 | 3 | 22 | 199 | 26 | 201 | 1.73e-34 | 122 |
| MsG0680030382.01.T01 | MTR_3g019710 | 39.196 | 199 | 113 | 4 | 18 | 215 | 14 | 205 | 5.83e-34 | 121 |
| MsG0680030382.01.T01 | MTR_8g020630 | 37.688 | 199 | 116 | 4 | 18 | 215 | 14 | 205 | 7.07e-34 | 120 |
| MsG0680030382.01.T01 | MTR_8g020650 | 39.683 | 189 | 106 | 4 | 28 | 215 | 24 | 205 | 2.91e-33 | 119 |
| MsG0680030382.01.T01 | MTR_3g019680 | 37.915 | 211 | 117 | 5 | 6 | 215 | 7 | 204 | 1.79e-32 | 117 |
| MsG0680030382.01.T01 | MTR_3g019650 | 37.441 | 211 | 118 | 5 | 6 | 215 | 7 | 204 | 3.33e-32 | 116 |
| MsG0680030382.01.T01 | MTR_2g045100 | 37.441 | 211 | 119 | 5 | 6 | 215 | 7 | 205 | 9.06e-32 | 115 |
| MsG0680030382.01.T01 | MTR_2g036120 | 37.186 | 199 | 117 | 4 | 18 | 215 | 14 | 205 | 2.45e-31 | 114 |
| MsG0680030382.01.T01 | MTR_8g020670 | 37.173 | 191 | 112 | 4 | 26 | 215 | 22 | 205 | 2.31e-30 | 111 |
| MsG0680030382.01.T01 | MTR_4g010340 | 38.421 | 190 | 108 | 5 | 27 | 215 | 20 | 201 | 3.42e-30 | 111 |
| MsG0680030382.01.T01 | MTR_2g044040 | 36.181 | 199 | 119 | 4 | 18 | 215 | 14 | 205 | 7.56e-30 | 110 |
| MsG0680030382.01.T01 | MTR_8g020610 | 39.474 | 190 | 105 | 6 | 28 | 215 | 22 | 203 | 9.39e-30 | 110 |
| MsG0680030382.01.T01 | MTR_8g020770 | 37.089 | 213 | 119 | 5 | 6 | 215 | 8 | 208 | 2.02e-29 | 109 |
| MsG0680030382.01.T01 | MTR_3g096330 | 33.649 | 211 | 135 | 4 | 3 | 211 | 557 | 764 | 3.05e-29 | 115 |
| MsG0680030382.01.T01 | MTR_2g019780 | 34.562 | 217 | 131 | 6 | 1 | 215 | 1 | 208 | 3.01e-28 | 106 |
| MsG0680030382.01.T01 | MTR_8g020760 | 34.123 | 211 | 131 | 4 | 6 | 215 | 4 | 207 | 6.97e-28 | 105 |
| MsG0680030382.01.T01 | MTR_8g020763 | 36.000 | 175 | 105 | 3 | 43 | 215 | 17 | 186 | 1.25e-27 | 104 |
| MsG0680030382.01.T01 | MTR_5g031460 | 34.673 | 199 | 122 | 4 | 18 | 215 | 14 | 205 | 1.37e-27 | 104 |
| MsG0680030382.01.T01 | MTR_0284s0010 | 35.176 | 199 | 121 | 4 | 18 | 215 | 14 | 205 | 1.44e-27 | 104 |
| MsG0680030382.01.T01 | MTR_7g011340 | 36.126 | 191 | 114 | 4 | 26 | 215 | 22 | 205 | 5.63e-27 | 102 |
| MsG0680030382.01.T01 | MTR_4g052770 | 39.161 | 143 | 82 | 3 | 74 | 215 | 67 | 205 | 7.00e-26 | 100 |
| MsG0680030382.01.T01 | MTR_2g086620 | 34.562 | 217 | 111 | 8 | 6 | 215 | 12 | 204 | 8.19e-26 | 99.8 |
| MsG0680030382.01.T01 | MTR_4g052780 | 39.161 | 143 | 82 | 3 | 74 | 215 | 67 | 205 | 9.52e-26 | 99.8 |
| MsG0680030382.01.T01 | MTR_2g086630 | 34.562 | 217 | 111 | 8 | 6 | 215 | 12 | 204 | 1.32e-25 | 99.4 |
| MsG0680030382.01.T01 | MTR_2g086640 | 34.597 | 211 | 119 | 7 | 6 | 215 | 11 | 203 | 2.77e-25 | 98.6 |
| MsG0680030382.01.T01 | MTR_3g073170 | 35.979 | 189 | 111 | 5 | 28 | 215 | 27 | 206 | 5.50e-25 | 97.8 |
| MsG0680030382.01.T01 | MTR_2g030915 | 54.054 | 74 | 20 | 1 | 93 | 166 | 1 | 60 | 1.50e-19 | 80.5 |
| MsG0680030382.01.T01 | MTR_3g019810 | 31.980 | 197 | 118 | 7 | 18 | 212 | 120 | 302 | 6.03e-17 | 78.2 |
| MsG0680030382.01.T01 | MTR_4g027415 | 39.683 | 126 | 70 | 3 | 26 | 150 | 22 | 142 | 9.06e-17 | 74.3 |
| MsG0680030382.01.T01 | MTR_2g072560 | 40.385 | 104 | 59 | 2 | 18 | 120 | 14 | 115 | 2.84e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030382.01.T01 | AT5G39120 | 63.927 | 219 | 75 | 3 | 1 | 215 | 1 | 219 | 2.24e-92 | 270 |
| MsG0680030382.01.T01 | AT5G39150 | 63.470 | 219 | 76 | 3 | 1 | 215 | 1 | 219 | 2.00e-91 | 268 |
| MsG0680030382.01.T01 | AT5G39180 | 63.470 | 219 | 76 | 3 | 1 | 215 | 1 | 219 | 2.86e-91 | 267 |
| MsG0680030382.01.T01 | AT5G39110 | 63.721 | 215 | 75 | 2 | 4 | 215 | 6 | 220 | 1.08e-90 | 266 |
| MsG0680030382.01.T01 | AT5G38940 | 66.837 | 196 | 63 | 1 | 22 | 215 | 26 | 221 | 3.51e-90 | 265 |
| MsG0680030382.01.T01 | AT5G38940 | 66.837 | 196 | 63 | 1 | 22 | 215 | 50 | 245 | 5.75e-90 | 265 |
| MsG0680030382.01.T01 | AT5G38930 | 67.172 | 198 | 63 | 1 | 20 | 215 | 24 | 221 | 1.93e-89 | 263 |
| MsG0680030382.01.T01 | AT3G05950 | 66.507 | 209 | 65 | 4 | 11 | 215 | 14 | 221 | 5.27e-88 | 259 |
| MsG0680030382.01.T01 | AT5G39130 | 65.327 | 199 | 65 | 3 | 20 | 215 | 22 | 219 | 1.48e-87 | 258 |
| MsG0680030382.01.T01 | AT5G39160 | 65.829 | 199 | 64 | 3 | 20 | 215 | 22 | 219 | 1.67e-87 | 258 |
| MsG0680030382.01.T01 | AT5G39190 | 62.727 | 220 | 76 | 5 | 1 | 215 | 1 | 219 | 3.12e-87 | 257 |
| MsG0680030382.01.T01 | AT5G38910 | 63.014 | 219 | 77 | 4 | 1 | 215 | 1 | 219 | 9.30e-87 | 256 |
| MsG0680030382.01.T01 | AT5G38960 | 64.179 | 201 | 69 | 2 | 18 | 215 | 22 | 222 | 1.96e-86 | 255 |
| MsG0680030382.01.T01 | AT4G14630 | 61.111 | 216 | 80 | 3 | 4 | 215 | 7 | 222 | 5.54e-85 | 251 |
| MsG0680030382.01.T01 | AT5G39160 | 63.317 | 199 | 65 | 3 | 20 | 215 | 22 | 215 | 8.91e-83 | 246 |
| MsG0680030382.01.T01 | AT3G04200 | 63.426 | 216 | 72 | 4 | 6 | 215 | 8 | 222 | 2.26e-82 | 245 |
| MsG0680030382.01.T01 | AT3G04150 | 58.108 | 222 | 85 | 5 | 1 | 215 | 1 | 221 | 3.56e-76 | 229 |
| MsG0680030382.01.T01 | AT3G04190 | 59.804 | 204 | 78 | 3 | 15 | 215 | 19 | 221 | 8.93e-76 | 228 |
| MsG0680030382.01.T01 | AT3G04150 | 54.701 | 234 | 87 | 5 | 1 | 215 | 1 | 234 | 6.94e-74 | 224 |
| MsG0680030382.01.T01 | AT5G39190 | 56.422 | 218 | 71 | 4 | 1 | 215 | 1 | 197 | 1.71e-73 | 221 |
| MsG0680030382.01.T01 | AT5G39160 | 55.963 | 218 | 72 | 4 | 1 | 215 | 1 | 197 | 4.77e-73 | 220 |
| MsG0680030382.01.T01 | AT3G04180 | 57.353 | 204 | 83 | 3 | 15 | 215 | 19 | 221 | 3.31e-72 | 219 |
| MsG0680030382.01.T01 | AT3G04170 | 55.814 | 215 | 87 | 5 | 5 | 215 | 8 | 218 | 4.72e-71 | 216 |
| MsG0680030382.01.T01 | AT5G38910 | 51.142 | 219 | 66 | 5 | 1 | 215 | 1 | 182 | 2.61e-60 | 187 |
| MsG0680030382.01.T01 | AT1G02335 | 47.475 | 198 | 98 | 3 | 20 | 215 | 22 | 215 | 2.72e-57 | 181 |
| MsG0680030382.01.T01 | AT1G09560 | 49.746 | 197 | 93 | 3 | 22 | 216 | 24 | 216 | 2.91e-57 | 181 |
| MsG0680030382.01.T01 | AT3G62020 | 47.170 | 212 | 105 | 4 | 7 | 215 | 8 | 215 | 3.49e-56 | 178 |
| MsG0680030382.01.T01 | AT1G18970 | 46.479 | 213 | 106 | 4 | 7 | 217 | 14 | 220 | 7.39e-56 | 177 |
| MsG0680030382.01.T01 | AT3G05930 | 45.909 | 220 | 109 | 5 | 1 | 215 | 1 | 215 | 1.02e-55 | 177 |
| MsG0680030382.01.T01 | AT1G18980 | 46.759 | 216 | 105 | 5 | 4 | 217 | 13 | 220 | 4.20e-54 | 173 |
| MsG0680030382.01.T01 | AT5G26700 | 46.411 | 209 | 93 | 6 | 11 | 215 | 16 | 209 | 3.44e-53 | 170 |
| MsG0680030382.01.T01 | AT3G62020 | 48.333 | 180 | 88 | 3 | 39 | 215 | 9 | 186 | 6.78e-49 | 159 |
| MsG0680030382.01.T01 | AT1G10460 | 42.211 | 199 | 108 | 5 | 22 | 215 | 19 | 215 | 8.49e-48 | 157 |
| MsG0680030382.01.T01 | AT3G10080 | 41.294 | 201 | 110 | 4 | 19 | 215 | 23 | 219 | 6.68e-45 | 149 |
| MsG0680030382.01.T01 | AT3G10080 | 41.089 | 202 | 111 | 4 | 18 | 215 | 93 | 290 | 3.54e-44 | 150 |
| MsG0680030382.01.T01 | AT5G20630 | 43.976 | 166 | 87 | 3 | 26 | 189 | 22 | 183 | 7.39e-39 | 134 |
| MsG0680030382.01.T01 | AT5G61750 | 41.848 | 184 | 97 | 4 | 6 | 187 | 8 | 183 | 8.66e-38 | 130 |
| MsG0680030382.01.T01 | AT1G74820 | 38.073 | 218 | 119 | 5 | 8 | 215 | 14 | 225 | 2.79e-36 | 127 |
| MsG0680030382.01.T01 | AT1G72610 | 38.095 | 189 | 109 | 4 | 26 | 212 | 19 | 201 | 2.20e-32 | 117 |
| MsG0680030382.01.T01 | AT5G38950 | 64.062 | 64 | 23 | 0 | 144 | 207 | 2 | 65 | 2.62e-20 | 82.8 |
| MsG0680030382.01.T01 | AT5G39100 | 64.151 | 53 | 19 | 0 | 4 | 56 | 6 | 58 | 1.26e-16 | 71.6 |
Find 56 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGCTAATGCTGTATT+TGG | 0.057045 | 6:+1349694 | MsG0680030382.01.T01:CDS |
| CTTGTTTGTGACAGCCTTCT+TGG | 0.126065 | 6:+1348991 | MsG0680030382.01.T01:CDS |
| TAGTGATTACACCTGGATTT+TGG | 0.253401 | 6:-1349675 | None:intergenic |
| TTCACTTTCAATTGAATGTT+GGG | 0.325573 | 6:+1349617 | MsG0680030382.01.T01:CDS |
| AGTATACATACCACCATTCT+TGG | 0.333982 | 6:-1349083 | None:intergenic |
| AGTATCTCATTAACAGTAAC+CGG | 0.338632 | 6:-1349385 | None:intergenic |
| TCATTTGCTGTAGCAAGCTT+TGG | 0.355521 | 6:-1349304 | None:intergenic |
| ACCACCATTCTTGGTATCAT+TGG | 0.369805 | 6:-1349074 | None:intergenic |
| TTGGAGGGTACTCTTTATGT+TGG | 0.391607 | 6:+1349511 | MsG0680030382.01.T01:CDS |
| CTCGTGTTGACTTTGCATCT+AGG | 0.405287 | 6:+1349437 | MsG0680030382.01.T01:CDS |
| GGAAATGCAGTTGTCATTGC+TGG | 0.408325 | 6:+1349643 | MsG0680030382.01.T01:CDS |
| CCACTATGTTATTGTCCACT+TGG | 0.415021 | 6:-1349759 | None:intergenic |
| TGAAAGTGAATGAGGCCAAT+TGG | 0.419001 | 6:-1349604 | None:intergenic |
| TGGAGGGTACTCTTTATGTT+GGG | 0.430272 | 6:+1349512 | MsG0680030382.01.T01:CDS |
| TCGTGTTGACTTTGCATCTA+GGG | 0.430505 | 6:+1349438 | MsG0680030382.01.T01:CDS |
| ATTCACTTTCAATTGAATGT+TGG | 0.434824 | 6:+1349616 | MsG0680030382.01.T01:CDS |
| TTTCAATTGAATGTTGGGTA+TGG | 0.435827 | 6:+1349622 | MsG0680030382.01.T01:CDS |
| ACAAAAGTCTTGTAAAGGGC+TGG | 0.441843 | 6:-1349044 | None:intergenic |
| GATGTCTTCGTGTTTCCAAT+TGG | 0.447280 | 6:+1349589 | MsG0680030382.01.T01:CDS |
| TTGCTTGTATATGGTTATGC+AGG | 0.454319 | 6:-1348924 | None:intergenic |
| CTATTGCTAATGCTGTATTT+GGG | 0.459960 | 6:+1349695 | MsG0680030382.01.T01:CDS |
| TTCTTCTACTCGGTGAAAGA+AGG | 0.467010 | 6:+1349328 | MsG0680030382.01.T01:CDS |
| ATTGTCCACTTGGAAAGCTT+TGG | 0.467417 | 6:-1349749 | None:intergenic |
| ATAAGAATCTCAGTGGCTCT+AGG | 0.470121 | 6:-1349484 | None:intergenic |
| TGAGATTCTTATCGTGTTGG+AGG | 0.479548 | 6:+1349495 | MsG0680030382.01.T01:CDS |
| GCCACACAAAAGTCTTGTAA+AGG | 0.496886 | 6:-1349049 | None:intergenic |
| CAAAAGTCTTGTAAAGGGCT+GGG | 0.515376 | 6:-1349043 | None:intergenic |
| TTGTAAAGGGCTGGGATCAA+AGG | 0.516879 | 6:-1349035 | None:intergenic |
| CCACACAAAAGTCTTGTAAA+GGG | 0.527635 | 6:-1349048 | None:intergenic |
| CAAACAATGATATAAGAGTA+AGG | 0.528304 | 6:-1349874 | None:intergenic |
| CACTGAGATTCTTATCGTGT+TGG | 0.542092 | 6:+1349492 | MsG0680030382.01.T01:CDS |
| GTGGCTCTAGGGTGAGTATG+TGG | 0.548107 | 6:-1349472 | None:intergenic |
| TAAGAATCTCAGTGGCTCTA+GGG | 0.548530 | 6:-1349483 | None:intergenic |
| GGACTTAGCAGCCAAAATCC+AGG | 0.549743 | 6:+1349664 | MsG0680030382.01.T01:CDS |
| CATTCAATTGAAAGTGAATG+AGG | 0.551568 | 6:-1349612 | None:intergenic |
| AGCAAATGATTTCTTCTACT+CGG | 0.553402 | 6:+1349318 | MsG0680030382.01.T01:CDS |
| ATACTAGGACTAAACACTCT+AGG | 0.572011 | 6:+1349403 | MsG0680030382.01.T01:CDS |
| ACAAGATGCTAAAGCCAAGA+AGG | 0.574992 | 6:-1349005 | None:intergenic |
| GTTACTGTTAATGAGATACT+AGG | 0.582511 | 6:+1349388 | MsG0680030382.01.T01:CDS |
| TGTGAATGGCAAATTCTGCA+AGG | 0.584711 | 6:+1349279 | MsG0680030382.01.T01:CDS |
| CGTGTTGACTTTGCATCTAG+GGG | 0.592403 | 6:+1349439 | MsG0680030382.01.T01:CDS |
| GTATCTCATTAACAGTAACC+GGG | 0.609818 | 6:-1349384 | None:intergenic |
| GAGATTCTTATCGTGTTGGA+GGG | 0.612927 | 6:+1349496 | MsG0680030382.01.T01:CDS |
| CCAAGTGGACAATAACATAG+TGG | 0.613774 | 6:+1349759 | MsG0680030382.01.T01:CDS |
| TTAGCAATAGTGATTACACC+TGG | 0.624375 | 6:-1349682 | None:intergenic |
| ACCAATGATACCAAGAATGG+TGG | 0.638601 | 6:+1349073 | MsG0680030382.01.T01:CDS |
| GGAAATACATCAAATCCACT+TGG | 0.640192 | 6:+1349349 | MsG0680030382.01.T01:CDS |
| ATCACAAAAGTACTCAACAA+AGG | 0.644517 | 6:+1349565 | MsG0680030382.01.T01:CDS |
| ACTTGGTTCAAAAGTGACCC+CGG | 0.652639 | 6:+1349366 | MsG0680030382.01.T01:CDS |
| TTTAATTATAACTATCAACA+TGG | 0.657137 | 6:-1349832 | None:intergenic |
| AGGGCTGGGATCAAAGGCAA+AGG | 0.658426 | 6:-1349029 | None:intergenic |
| GCTACCAATGATACCAAGAA+TGG | 0.663257 | 6:+1349070 | MsG0680030382.01.T01:CDS |
| TCTCACCAAAGCTTTCCAAG+TGG | 0.665947 | 6:+1349744 | MsG0680030382.01.T01:CDS |
| GCTCTAGGGTGAGTATGTGG+AGG | 0.673911 | 6:-1349469 | None:intergenic |
| TATCTCATTAACAGTAACCG+GGG | 0.698800 | 6:-1349383 | None:intergenic |
| CAACACGATAAGAATCTCAG+TGG | 0.757588 | 6:-1349491 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATATGATTTGTTTTT+TGG | + | Chr6:1349907-1349926 | MsG0680030382.01.T01:three_prime_UTR | 10.0% |
| !! | TTAATATATACGTATATAAG+TGG | + | Chr6:1349213-1349232 | MsG0680030382.01.T01:intron | 15.0% |
| !! | TTTAATTATAACTATCAACA+TGG | - | Chr6:1349835-1349854 | None:intergenic | 15.0% |
| !! | TACGTATATATTAATGTTGT+CGG | - | Chr6:1349207-1349226 | None:intergenic | 20.0% |
| ! | ACAATCTTCAAAAACAATTC+TGG | + | Chr6:1349782-1349801 | MsG0680030382.01.T01:CDS | 25.0% |
| ! | ACTATGATACAAAAGTTTCA+CGG | + | Chr6:1349167-1349186 | MsG0680030382.01.T01:intron | 25.0% |
| ! | ATTCACTTTCAATTGAATGT+TGG | + | Chr6:1349616-1349635 | MsG0680030382.01.T01:CDS | 25.0% |
| ! | CAAACAATGATATAAGAGTA+AGG | - | Chr6:1349877-1349896 | None:intergenic | 25.0% |
| ! | CAATCTTCAAAAACAATTCT+GGG | + | Chr6:1349783-1349802 | MsG0680030382.01.T01:CDS | 25.0% |
| ! | TCATAGTTCAATCAGTTTAA+CGG | - | Chr6:1349154-1349173 | None:intergenic | 25.0% |
| ! | TTCACTTTCAATTGAATGTT+GGG | + | Chr6:1349617-1349636 | MsG0680030382.01.T01:CDS | 25.0% |
| !! | TTGTGTATTTTGCTTGTATA+TGG | - | Chr6:1348936-1348955 | None:intergenic | 25.0% |
| !!! | AAGAAGTCTTCATGTTTTTT+TGG | - | Chr6:1348970-1348989 | None:intergenic | 25.0% |
| !!! | AGAACTTCTGAAGAAATTTT+TGG | - | Chr6:1349727-1349746 | None:intergenic | 25.0% |
| ACTATTGCTAATGCTGTATT+TGG | + | Chr6:1349694-1349713 | MsG0680030382.01.T01:CDS | 30.0% | |
| AGCAAATGATTTCTTCTACT+CGG | + | Chr6:1349318-1349337 | MsG0680030382.01.T01:CDS | 30.0% | |
| AGTATCTCATTAACAGTAAC+CGG | - | Chr6:1349388-1349407 | None:intergenic | 30.0% | |
| CATAGTTCAATCAGTTTAAC+GGG | - | Chr6:1349153-1349172 | None:intergenic | 30.0% | |
| CATTCAATTGAAAGTGAATG+AGG | - | Chr6:1349615-1349634 | None:intergenic | 30.0% | |
| CTATTGCTAATGCTGTATTT+GGG | + | Chr6:1349695-1349714 | MsG0680030382.01.T01:CDS | 30.0% | |
| GTTACTGTTAATGAGATACT+AGG | + | Chr6:1349388-1349407 | MsG0680030382.01.T01:CDS | 30.0% | |
| TTTCAATTGAATGTTGGGTA+TGG | + | Chr6:1349622-1349641 | MsG0680030382.01.T01:CDS | 30.0% | |
| !! | ATCACAAAAGTACTCAACAA+AGG | + | Chr6:1349565-1349584 | MsG0680030382.01.T01:CDS | 30.0% |
| AGTATACATACCACCATTCT+TGG | - | Chr6:1349086-1349105 | None:intergenic | 35.0% | |
| ATACTAGGACTAAACACTCT+AGG | + | Chr6:1349403-1349422 | MsG0680030382.01.T01:CDS | 35.0% | |
| GGAAATACATCAAATCCACT+TGG | + | Chr6:1349349-1349368 | MsG0680030382.01.T01:CDS | 35.0% | |
| GTATCTCATTAACAGTAACC+GGG | - | Chr6:1349387-1349406 | None:intergenic | 35.0% | |
| TATCTCATTAACAGTAACCG+GGG | - | Chr6:1349386-1349405 | None:intergenic | 35.0% | |
| TCTTCAAAAACAATTCTGGG+TGG | + | Chr6:1349786-1349805 | MsG0680030382.01.T01:CDS | 35.0% | |
| TTAGCAATAGTGATTACACC+TGG | - | Chr6:1349685-1349704 | None:intergenic | 35.0% | |
| TTGCTTGTATATGGTTATGC+AGG | - | Chr6:1348927-1348946 | None:intergenic | 35.0% | |
| ! | CCACACAAAAGTCTTGTAAA+GGG | - | Chr6:1349051-1349070 | None:intergenic | 35.0% |
| ! | TAGTGATTACACCTGGATTT+TGG | - | Chr6:1349678-1349697 | None:intergenic | 35.0% |
| ! | TGAGTACTTTTGTGATGAGA+CGG | - | Chr6:1349561-1349580 | None:intergenic | 35.0% |
| ! | TGTTGTGCAGTTTTTGTGAA+TGG | + | Chr6:1349265-1349284 | MsG0680030382.01.T01:intron | 35.0% |
| ACAAGATGCTAAAGCCAAGA+AGG | - | Chr6:1349008-1349027 | None:intergenic | 40.0% | |
| ACCAATGATACCAAGAATGG+TGG | + | Chr6:1349073-1349092 | MsG0680030382.01.T01:CDS | 40.0% | |
| ACCACCATTCTTGGTATCAT+TGG | - | Chr6:1349077-1349096 | None:intergenic | 40.0% | |
| ATAAGAATCTCAGTGGCTCT+AGG | - | Chr6:1349487-1349506 | None:intergenic | 40.0% | |
| ATTGTCCACTTGGAAAGCTT+TGG | - | Chr6:1349752-1349771 | None:intergenic | 40.0% | |
| CAACACGATAAGAATCTCAG+TGG | - | Chr6:1349494-1349513 | None:intergenic | 40.0% | |
| CACTGAGATTCTTATCGTGT+TGG | + | Chr6:1349492-1349511 | MsG0680030382.01.T01:CDS | 40.0% | |
| CCAAGTGGACAATAACATAG+TGG | + | Chr6:1349759-1349778 | MsG0680030382.01.T01:CDS | 40.0% | |
| CCACTATGTTATTGTCCACT+TGG | - | Chr6:1349762-1349781 | None:intergenic | 40.0% | |
| GAGATTCTTATCGTGTTGGA+GGG | + | Chr6:1349496-1349515 | MsG0680030382.01.T01:CDS | 40.0% | |
| GATGTCTTCGTGTTTCCAAT+TGG | + | Chr6:1349589-1349608 | MsG0680030382.01.T01:CDS | 40.0% | |
| GCTACCAATGATACCAAGAA+TGG | + | Chr6:1349070-1349089 | MsG0680030382.01.T01:CDS | 40.0% | |
| TGAAAGTGAATGAGGCCAAT+TGG | - | Chr6:1349607-1349626 | None:intergenic | 40.0% | |
| TGAGATTCTTATCGTGTTGG+AGG | + | Chr6:1349495-1349514 | MsG0680030382.01.T01:CDS | 40.0% | |
| TGTGAATGGCAAATTCTGCA+AGG | + | Chr6:1349279-1349298 | MsG0680030382.01.T01:CDS | 40.0% | |
| ! | ACAAAAGTCTTGTAAAGGGC+TGG | - | Chr6:1349047-1349066 | None:intergenic | 40.0% |
| ! | CAAAAGTCTTGTAAAGGGCT+GGG | - | Chr6:1349046-1349065 | None:intergenic | 40.0% |
| ! | CCCTTTACAAGACTTTTGTG+TGG | + | Chr6:1349048-1349067 | MsG0680030382.01.T01:CDS | 40.0% |
| ! | GCCACACAAAAGTCTTGTAA+AGG | - | Chr6:1349052-1349071 | None:intergenic | 40.0% |
| ! | TAAGAATCTCAGTGGCTCTA+GGG | - | Chr6:1349486-1349505 | None:intergenic | 40.0% |
| ! | TTCTTCTACTCGGTGAAAGA+AGG | + | Chr6:1349328-1349347 | MsG0680030382.01.T01:CDS | 40.0% |
| ! | TTTGTGATGAGACGGTTTTC+TGG | - | Chr6:1349553-1349572 | None:intergenic | 40.0% |
| !! | TCATTTGCTGTAGCAAGCTT+TGG | - | Chr6:1349307-1349326 | None:intergenic | 40.0% |
| !! | TCGTGTTGACTTTGCATCTA+GGG | + | Chr6:1349438-1349457 | MsG0680030382.01.T01:CDS | 40.0% |
| !! | TGGAGGGTACTCTTTATGTT+GGG | + | Chr6:1349512-1349531 | MsG0680030382.01.T01:CDS | 40.0% |
| !! | TTGGAGGGTACTCTTTATGT+TGG | + | Chr6:1349511-1349530 | MsG0680030382.01.T01:CDS | 40.0% |
| ACTTGGTTCAAAAGTGACCC+CGG | + | Chr6:1349366-1349385 | MsG0680030382.01.T01:CDS | 45.0% | |
| CTTGTTTGTGACAGCCTTCT+TGG | + | Chr6:1348991-1349010 | MsG0680030382.01.T01:CDS | 45.0% | |
| GGAAATGCAGTTGTCATTGC+TGG | + | Chr6:1349643-1349662 | MsG0680030382.01.T01:CDS | 45.0% | |
| TCTCACCAAAGCTTTCCAAG+TGG | + | Chr6:1349744-1349763 | MsG0680030382.01.T01:CDS | 45.0% | |
| TTGTAAAGGGCTGGGATCAA+AGG | - | Chr6:1349038-1349057 | None:intergenic | 45.0% | |
| !! | CGTGTTGACTTTGCATCTAG+GGG | + | Chr6:1349439-1349458 | MsG0680030382.01.T01:CDS | 45.0% |
| !! | CTCGTGTTGACTTTGCATCT+AGG | + | Chr6:1349437-1349456 | MsG0680030382.01.T01:CDS | 45.0% |
| GGACTTAGCAGCCAAAATCC+AGG | + | Chr6:1349664-1349683 | MsG0680030382.01.T01:CDS | 50.0% | |
| !!! | GGGGTCACTTTTGAACCAAG+TGG | - | Chr6:1349367-1349386 | None:intergenic | 50.0% |
| AGGGCTGGGATCAAAGGCAA+AGG | - | Chr6:1349032-1349051 | None:intergenic | 55.0% | |
| !! | GCTCTAGGGTGAGTATGTGG+AGG | - | Chr6:1349472-1349491 | None:intergenic | 55.0% |
| !! | GTGGCTCTAGGGTGAGTATG+TGG | - | Chr6:1349475-1349494 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 1348916 | 1349930 | 1348916 | ID=MsG0680030382.01;Name=MsG0680030382.01 |
| Chr6 | mRNA | 1348916 | 1349930 | 1348916 | ID=MsG0680030382.01.T01;Parent=MsG0680030382.01;Name=MsG0680030382.01.T01;_AED=0.47;_eAED=0.47;_QI=61|1|1|1|1|1|2|111|220 |
| Chr6 | exon | 1348916 | 1349094 | 1348916 | ID=MsG0680030382.01.T01:exon:2530;Parent=MsG0680030382.01.T01 |
| Chr6 | exon | 1349275 | 1349930 | 1349275 | ID=MsG0680030382.01.T01:exon:2531;Parent=MsG0680030382.01.T01 |
| Chr6 | five_prime_UTR | 1348916 | 1348976 | 1348916 | ID=MsG0680030382.01.T01:five_prime_utr;Parent=MsG0680030382.01.T01 |
| Chr6 | CDS | 1348977 | 1349094 | 1348977 | ID=MsG0680030382.01.T01:cds;Parent=MsG0680030382.01.T01 |
| Chr6 | CDS | 1349275 | 1349819 | 1349275 | ID=MsG0680030382.01.T01:cds;Parent=MsG0680030382.01.T01 |
| Chr6 | three_prime_UTR | 1349820 | 1349930 | 1349820 | ID=MsG0680030382.01.T01:three_prime_utr;Parent=MsG0680030382.01.T01 |
| Gene Sequence |
| Protein sequence |
