Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016875.01.T01 | MCI01328.1 | 93.75 | 128 | 8 | 0 | 9 | 136 | 1 | 128 | 1.07E-83 | 252 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016875.01.T01 | Q0IU52 | 48.649 | 111 | 52 | 4 | 9 | 116 | 35 | 143 | 2.22E-25 | 102 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016875.01.T01 | A0A392NN62 | 93.750 | 128 | 8 | 0 | 9 | 136 | 1 | 128 | 5.11e-84 | 252 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000984.01 | MsG0380016875.01 | 0.852863 | 3.490483e-61 | 7.396719e-58 |
MsG0180005678.01 | MsG0380016875.01 | 0.827230 | 1.754672e-54 | 1.683711e-51 |
MsG0380016875.01 | MsG0580025970.01 | 0.823714 | 1.194030e-53 | 1.036301e-50 |
MsG0380016875.01 | MsG0880043920.01 | 0.837981 | 3.771448e-57 | 4.981986e-54 |
MsG0280006924.01 | MsG0380016875.01 | 0.836457 | 9.252593e-57 | 1.166732e-53 |
MsG0280008751.01 | MsG0380016875.01 | 0.812761 | 3.602553e-51 | 2.310102e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016875.01.T01 | MTR_3g096930 | 98.246 | 114 | 2 | 0 | 12 | 125 | 84 | 197 | 8.96e-81 | 245 |
MsG0380016875.01.T01 | MTR_8g094590 | 78.070 | 114 | 25 | 0 | 12 | 125 | 73 | 186 | 2.73e-66 | 204 |
MsG0380016875.01.T01 | MTR_8g094590 | 78.070 | 114 | 25 | 0 | 12 | 125 | 73 | 186 | 3.65e-65 | 204 |
MsG0380016875.01.T01 | MTR_8g094590 | 78.070 | 114 | 25 | 0 | 12 | 125 | 73 | 186 | 7.46e-65 | 204 |
MsG0380016875.01.T01 | MTR_1g029810 | 58.261 | 115 | 47 | 1 | 12 | 125 | 57 | 171 | 2.79e-40 | 139 |
MsG0380016875.01.T01 | MTR_1g029810 | 58.261 | 115 | 47 | 1 | 12 | 125 | 57 | 171 | 6.69e-40 | 139 |
MsG0380016875.01.T01 | MTR_6g084710 | 46.154 | 117 | 59 | 3 | 12 | 125 | 191 | 306 | 1.54e-30 | 115 |
MsG0380016875.01.T01 | MTR_6g084710 | 40.667 | 150 | 74 | 5 | 12 | 147 | 191 | 339 | 1.84e-30 | 115 |
MsG0380016875.01.T01 | MTR_4g023650 | 50.000 | 102 | 44 | 3 | 12 | 106 | 61 | 162 | 5.37e-24 | 96.3 |
MsG0380016875.01.T01 | MTR_4g023630 | 50.980 | 102 | 42 | 4 | 13 | 106 | 62 | 163 | 1.53e-22 | 92.4 |
MsG0380016875.01.T01 | MTR_8g096990 | 36.449 | 107 | 60 | 3 | 13 | 115 | 87 | 189 | 3.72e-15 | 71.6 |
MsG0380016875.01.T01 | MTR_5g080890 | 36.449 | 107 | 60 | 3 | 13 | 115 | 87 | 189 | 7.14e-15 | 70.9 |
MsG0380016875.01.T01 | MTR_5g080960 | 36.449 | 107 | 60 | 3 | 13 | 115 | 87 | 189 | 1.38e-14 | 70.1 |
MsG0380016875.01.T01 | MTR_8g038280 | 35.455 | 110 | 63 | 3 | 13 | 118 | 87 | 192 | 1.54e-14 | 69.7 |
MsG0380016875.01.T01 | MTR_3g006820 | 33.043 | 115 | 72 | 3 | 13 | 125 | 59 | 170 | 7.70e-14 | 67.8 |
MsG0380016875.01.T01 | MTR_7g117430 | 36.170 | 94 | 51 | 4 | 13 | 101 | 142 | 231 | 1.21e-13 | 67.4 |
MsG0380016875.01.T01 | MTR_1g115210 | 33.333 | 105 | 61 | 4 | 13 | 113 | 147 | 246 | 1.85e-13 | 66.6 |
MsG0380016875.01.T01 | MTR_1g061940 | 30.702 | 114 | 68 | 3 | 12 | 115 | 83 | 195 | 1.90e-13 | 66.6 |
MsG0380016875.01.T01 | MTR_6g085010 | 30.973 | 113 | 66 | 4 | 17 | 125 | 161 | 265 | 3.31e-13 | 66.2 |
MsG0380016875.01.T01 | MTR_1g078240 | 30.088 | 113 | 69 | 3 | 12 | 115 | 69 | 180 | 7.68e-13 | 65.1 |
MsG0380016875.01.T01 | MTR_1g078240 | 30.088 | 113 | 69 | 3 | 12 | 115 | 69 | 180 | 7.75e-13 | 65.1 |
MsG0380016875.01.T01 | MTR_1g078240 | 30.088 | 113 | 69 | 3 | 12 | 115 | 69 | 180 | 9.71e-13 | 64.7 |
MsG0380016875.01.T01 | MTR_6g090290 | 32.710 | 107 | 64 | 3 | 13 | 115 | 87 | 189 | 2.23e-12 | 63.5 |
MsG0380016875.01.T01 | MTR_5g091130 | 35.514 | 107 | 62 | 4 | 13 | 113 | 192 | 297 | 3.12e-12 | 63.2 |
MsG0380016875.01.T01 | MTR_3g028120 | 31.481 | 108 | 68 | 3 | 12 | 115 | 89 | 194 | 4.92e-12 | 62.8 |
MsG0380016875.01.T01 | MTR_2g070430 | 36.975 | 119 | 53 | 7 | 5 | 115 | 80 | 184 | 9.58e-12 | 62.0 |
MsG0380016875.01.T01 | MTR_2g059460 | 31.481 | 108 | 65 | 4 | 13 | 115 | 60 | 163 | 2.57e-11 | 60.5 |
MsG0380016875.01.T01 | MTR_3g097150 | 30.088 | 113 | 70 | 4 | 13 | 121 | 103 | 210 | 3.64e-11 | 60.1 |
MsG0380016875.01.T01 | MTR_8g103880 | 30.435 | 115 | 69 | 4 | 15 | 125 | 119 | 226 | 4.98e-11 | 59.7 |
MsG0380016875.01.T01 | MTR_7g080230 | 26.549 | 113 | 73 | 3 | 12 | 115 | 71 | 182 | 6.71e-11 | 59.3 |
MsG0380016875.01.T01 | MTR_2g067830 | 30.841 | 107 | 69 | 2 | 13 | 115 | 58 | 163 | 7.65e-11 | 59.3 |
MsG0380016875.01.T01 | MTR_5g008150 | 31.897 | 116 | 71 | 3 | 13 | 124 | 64 | 175 | 8.88e-11 | 58.9 |
MsG0380016875.01.T01 | MTR_1g111350 | 30.769 | 117 | 68 | 5 | 13 | 125 | 132 | 239 | 9.27e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016875.01.T01 | AT4G33490 | 67.544 | 114 | 37 | 0 | 12 | 125 | 56 | 169 | 1.81e-53 | 174 |
MsG0380016875.01.T01 | AT4G33490 | 67.544 | 114 | 37 | 0 | 12 | 125 | 59 | 172 | 3.24e-53 | 174 |
MsG0380016875.01.T01 | AT1G44130 | 46.087 | 115 | 61 | 1 | 12 | 125 | 48 | 162 | 2.17e-33 | 121 |
MsG0380016875.01.T01 | AT1G77480 | 46.087 | 115 | 61 | 1 | 12 | 125 | 66 | 180 | 8.01e-33 | 120 |
MsG0380016875.01.T01 | AT1G77480 | 46.087 | 115 | 61 | 1 | 12 | 125 | 66 | 180 | 5.70e-31 | 115 |
MsG0380016875.01.T01 | AT1G49050 | 38.750 | 160 | 83 | 5 | 3 | 147 | 20 | 179 | 4.72e-26 | 102 |
MsG0380016875.01.T01 | AT1G49050 | 40.397 | 151 | 75 | 5 | 12 | 147 | 202 | 352 | 3.40e-25 | 100 |
MsG0380016875.01.T01 | AT1G49050 | 40.397 | 151 | 75 | 5 | 12 | 147 | 202 | 352 | 6.57e-25 | 99.8 |
MsG0380016875.01.T01 | AT2G36670 | 28.889 | 135 | 73 | 4 | 3 | 118 | 17 | 147 | 1.02e-12 | 64.7 |
MsG0380016875.01.T01 | AT2G36670 | 28.889 | 135 | 73 | 4 | 3 | 118 | 17 | 147 | 1.02e-12 | 64.7 |
MsG0380016875.01.T01 | AT1G01300 | 31.858 | 113 | 66 | 5 | 13 | 118 | 142 | 250 | 6.05e-12 | 62.4 |
MsG0380016875.01.T01 | AT1G65240 | 29.204 | 113 | 68 | 3 | 12 | 115 | 73 | 182 | 7.59e-12 | 62.0 |
MsG0380016875.01.T01 | AT2G03200 | 32.381 | 105 | 62 | 4 | 17 | 116 | 111 | 211 | 9.31e-12 | 62.0 |
MsG0380016875.01.T01 | AT3G20015 | 33.333 | 117 | 67 | 5 | 13 | 125 | 131 | 240 | 9.54e-12 | 62.0 |
MsG0380016875.01.T01 | AT2G36670 | 28.455 | 123 | 72 | 3 | 8 | 118 | 100 | 218 | 1.06e-11 | 61.6 |
MsG0380016875.01.T01 | AT2G36670 | 28.689 | 122 | 71 | 3 | 9 | 118 | 96 | 213 | 1.13e-11 | 61.6 |
MsG0380016875.01.T01 | AT5G10770 | 35.577 | 104 | 60 | 4 | 13 | 110 | 132 | 234 | 1.37e-11 | 61.6 |
MsG0380016875.01.T01 | AT5G36260 | 30.088 | 113 | 67 | 4 | 12 | 115 | 77 | 186 | 2.20e-11 | 60.8 |
MsG0380016875.01.T01 | AT3G18490 | 30.769 | 117 | 69 | 6 | 13 | 125 | 162 | 270 | 5.43e-11 | 59.7 |
MsG0380016875.01.T01 | AT2G42980 | 31.776 | 107 | 66 | 4 | 13 | 113 | 160 | 265 | 9.22e-11 | 58.9 |
Find 40 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATACCACTCTCACTTCTTT+AGG | 0.219577 | 3:-88895802 | None:intergenic |
ACCCTTTGCTAGCCTTAAAT+AGG | 0.292658 | 3:-88895836 | MsG0380016875.01.T01:CDS |
GGGTATGTAAAGCCTATTTA+AGG | 0.294967 | 3:+88895824 | None:intergenic |
AGACACCACATCCGCTTTAC+CGG | 0.336790 | 3:-88896079 | MsG0380016875.01.T01:CDS |
GTGTCAATATCAAGAAAATA+TGG | 0.341260 | 3:+88896339 | None:intergenic |
GCCTTGTTCGCGTTGCTCTC+AGG | 0.405030 | 3:-88896283 | MsG0380016875.01.T01:intron |
CATCACATTGAAGCCATGTT+AGG | 0.420882 | 3:+88896307 | None:intergenic |
CTTAAAGTTCGTATGGCACT+TGG | 0.422527 | 3:-88895876 | MsG0380016875.01.T01:CDS |
ACCTGCATATGTTAAAAGTA+AGG | 0.428729 | 3:+88896400 | None:intergenic |
TATGTTCTCAACTTTACAAA+TGG | 0.435278 | 3:-88895906 | MsG0380016875.01.T01:CDS |
ATAATGTGACTATCAACATT+GGG | 0.460427 | 3:-88896374 | MsG0380016875.01.T01:CDS |
ATATCAAGAAAATATGGCCT+TGG | 0.468926 | 3:+88896345 | None:intergenic |
GCACAGAGGGGATGCCTGCA+TGG | 0.478162 | 3:+88896038 | None:intergenic |
TCAAGAAAATATGGCCTTGG+TGG | 0.495645 | 3:+88896348 | None:intergenic |
CTAAAGAAGTGAGAGTGGTA+TGG | 0.500431 | 3:+88895803 | None:intergenic |
GCCTATTTAAGGCTAGCAAA+GGG | 0.506286 | 3:+88895835 | None:intergenic |
GTGCCATACGAACTTTAAGT+TGG | 0.511112 | 3:+88895880 | None:intergenic |
GCAGATCATTACTCATCTCT+TGG | 0.518717 | 3:-88895948 | MsG0380016875.01.T01:CDS |
TATAATGTGACTATCAACAT+TGG | 0.520628 | 3:-88896375 | MsG0380016875.01.T01:CDS |
CTAGGCCGGTAAAGCGGATG+TGG | 0.520658 | 3:+88896074 | None:intergenic |
GTGATGCACGGATGCACAGA+GGG | 0.529685 | 3:+88896025 | None:intergenic |
CCTGCATATGTTAAAAGTAA+GGG | 0.533468 | 3:+88896401 | None:intergenic |
AGCCTATTTAAGGCTAGCAA+AGG | 0.534680 | 3:+88895834 | None:intergenic |
CATGGGACTAAGTCATTGCT+AGG | 0.535975 | 3:+88896056 | None:intergenic |
TAAAGAAGTGAGAGTGGTAT+GGG | 0.551763 | 3:+88895804 | None:intergenic |
CTGTGCATCCGTGCATCACA+CGG | 0.557548 | 3:-88896021 | MsG0380016875.01.T01:CDS |
CACAGAGGGGATGCCTGCAT+GGG | 0.564456 | 3:+88896039 | None:intergenic |
GGACTAAGTCATTGCTAGGC+CGG | 0.569566 | 3:+88896060 | None:intergenic |
GTAGTTATCCGTGTGATGCA+CGG | 0.570573 | 3:+88896013 | None:intergenic |
TTAAAGTTCGTATGGCACTT+GGG | 0.575859 | 3:-88895875 | MsG0380016875.01.T01:CDS |
ACACGGGTAGCGACCTAACA+TGG | 0.578697 | 3:-88896320 | MsG0380016875.01.T01:CDS |
ACCTGAGAGCAACGCGAACA+AGG | 0.580548 | 3:+88896282 | None:intergenic |
GCAATGACTTAGTCCCATGC+AGG | 0.592637 | 3:-88896052 | MsG0380016875.01.T01:CDS |
CAAGAAAATATGGCCTTGGT+GGG | 0.593840 | 3:+88896349 | None:intergenic |
AGTCCAACTTAAAGTTCGTA+TGG | 0.601835 | 3:-88895883 | MsG0380016875.01.T01:CDS |
AAAACCTAAAGAAGTGAGAG+TGG | 0.635909 | 3:+88895798 | None:intergenic |
TCAACATTGGGTACCCACCA+AGG | 0.642379 | 3:-88896362 | MsG0380016875.01.T01:CDS |
TCATTGCTAGGCCGGTAAAG+CGG | 0.656612 | 3:+88896068 | None:intergenic |
TGTGATGCACGGATGCACAG+AGG | 0.715403 | 3:+88896024 | None:intergenic |
TGATGCACGGATGCACAGAG+GGG | 0.795188 | 3:+88896026 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTGAAGATTAATTTGAT+AGG | + | Chr3:88896105-88896124 | None:intergenic | 15.0% |
!!! | ATATTTTCTTGATATTGACA+CGG | - | Chr3:88895877-88895896 | MsG0380016875.01.T01:CDS | 20.0% |
! | ATAATGTGACTATCAACATT+GGG | - | Chr3:88895840-88895859 | MsG0380016875.01.T01:CDS | 25.0% |
! | CTAATCTCATTTCAAGAAAA+AGG | + | Chr3:88896028-88896047 | None:intergenic | 25.0% |
! | GTGTCAATATCAAGAAAATA+TGG | + | Chr3:88895878-88895897 | None:intergenic | 25.0% |
! | TATAATGTGACTATCAACAT+TGG | - | Chr3:88895839-88895858 | MsG0380016875.01.T01:CDS | 25.0% |
! | TATGTTCTCAACTTTACAAA+TGG | - | Chr3:88896308-88896327 | MsG0380016875.01.T01:CDS | 25.0% |
!! | TATTTTCTTGATATTGACAC+GGG | - | Chr3:88895878-88895897 | MsG0380016875.01.T01:CDS | 25.0% |
!!! | TTCAAAGTTGTTAATTTGCT+AGG | + | Chr3:88895997-88896016 | None:intergenic | 25.0% |
ACCTGCATATGTTAAAAGTA+AGG | + | Chr3:88895817-88895836 | None:intergenic | 30.0% | |
ATATCAAGAAAATATGGCCT+TGG | + | Chr3:88895872-88895891 | None:intergenic | 30.0% | |
CAGACATACATATATCTATC+TGG | + | Chr3:88896059-88896078 | None:intergenic | 30.0% | |
CCTGCATATGTTAAAAGTAA+GGG | + | Chr3:88895816-88895835 | None:intergenic | 30.0% | |
! | TGCTAGGTAATTTTGAATGT+TGG | + | Chr3:88895981-88896000 | None:intergenic | 30.0% |
AGTCCAACTTAAAGTTCGTA+TGG | - | Chr3:88896331-88896350 | MsG0380016875.01.T01:CDS | 35.0% | |
GGGTATGTAAAGCCTATTTA+AGG | + | Chr3:88896393-88896412 | None:intergenic | 35.0% | |
TAAAGAAGTGAGAGTGGTAT+GGG | + | Chr3:88896413-88896432 | None:intergenic | 35.0% | |
TTAAAGTTCGTATGGCACTT+GGG | - | Chr3:88896339-88896358 | MsG0380016875.01.T01:CDS | 35.0% | |
!! | CCCTTACTTTTAACATATGC+AGG | - | Chr3:88895813-88895832 | MsG0380016875.01.T01:CDS | 35.0% |
CATCACATTGAAGCCATGTT+AGG | + | Chr3:88895910-88895929 | None:intergenic | 40.0% | |
CTAAAGAAGTGAGAGTGGTA+TGG | + | Chr3:88896414-88896433 | None:intergenic | 40.0% | |
CTTAAAGTTCGTATGGCACT+TGG | - | Chr3:88896338-88896357 | MsG0380016875.01.T01:CDS | 40.0% | |
GCAGATCATTACTCATCTCT+TGG | - | Chr3:88896266-88896285 | MsG0380016875.01.T01:intron | 40.0% | |
GTGCCATACGAACTTTAAGT+TGG | + | Chr3:88896337-88896356 | None:intergenic | 40.0% | |
! | AGCCTATTTAAGGCTAGCAA+AGG | + | Chr3:88896383-88896402 | None:intergenic | 40.0% |
! | CAAGAAAATATGGCCTTGGT+GGG | + | Chr3:88895868-88895887 | None:intergenic | 40.0% |
! | GCCTATTTAAGGCTAGCAAA+GGG | + | Chr3:88896382-88896401 | None:intergenic | 40.0% |
! | TCAAGAAAATATGGCCTTGG+TGG | + | Chr3:88895869-88895888 | None:intergenic | 40.0% |
!! | ACCCTTTGCTAGCCTTAAAT+AGG | - | Chr3:88896378-88896397 | MsG0380016875.01.T01:CDS | 40.0% |
CATGGGACTAAGTCATTGCT+AGG | + | Chr3:88896161-88896180 | None:intergenic | 45.0% | |
GTAGTTATCCGTGTGATGCA+CGG | + | Chr3:88896204-88896223 | None:intergenic | 45.0% | |
AGACACCACATCCGCTTTAC+CGG | - | Chr3:88896135-88896154 | MsG0380016875.01.T01:intron | 50.0% | |
GCAATGACTTAGTCCCATGC+AGG | - | Chr3:88896162-88896181 | MsG0380016875.01.T01:intron | 50.0% | |
GGACTAAGTCATTGCTAGGC+CGG | + | Chr3:88896157-88896176 | None:intergenic | 50.0% | |
TCAACATTGGGTACCCACCA+AGG | - | Chr3:88895852-88895871 | MsG0380016875.01.T01:CDS | 50.0% | |
TCATTGCTAGGCCGGTAAAG+CGG | + | Chr3:88896149-88896168 | None:intergenic | 50.0% | |
ACACGGGTAGCGACCTAACA+TGG | - | Chr3:88895894-88895913 | MsG0380016875.01.T01:CDS | 55.0% | |
ACCTGAGAGCAACGCGAACA+AGG | + | Chr3:88895935-88895954 | None:intergenic | 55.0% | |
CTGTGCATCCGTGCATCACA+CGG | - | Chr3:88896193-88896212 | MsG0380016875.01.T01:intron | 55.0% | |
GTGATGCACGGATGCACAGA+GGG | + | Chr3:88896192-88896211 | None:intergenic | 55.0% | |
TGATGCACGGATGCACAGAG+GGG | + | Chr3:88896191-88896210 | None:intergenic | 55.0% | |
TGTGATGCACGGATGCACAG+AGG | + | Chr3:88896193-88896212 | None:intergenic | 55.0% | |
CACAGAGGGGATGCCTGCAT+GGG | + | Chr3:88896178-88896197 | None:intergenic | 60.0% | |
CTAGGCCGGTAAAGCGGATG+TGG | + | Chr3:88896143-88896162 | None:intergenic | 60.0% | |
! | GCCTTGTTCGCGTTGCTCTC+AGG | - | Chr3:88895931-88895950 | MsG0380016875.01.T01:CDS | 60.0% |
GCACAGAGGGGATGCCTGCA+TGG | + | Chr3:88896179-88896198 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 88895803 | 88896433 | 88895803 | ID=MsG0380016875.01;Name=MsG0380016875.01 |
Chr3 | mRNA | 88895803 | 88896433 | 88895803 | ID=MsG0380016875.01.T01;Parent=MsG0380016875.01;Name=MsG0380016875.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|148 |
Chr3 | exon | 88896284 | 88896433 | 88896284 | ID=MsG0380016875.01.T01:exon:30735;Parent=MsG0380016875.01.T01 |
Chr3 | exon | 88895803 | 88896099 | 88895803 | ID=MsG0380016875.01.T01:exon:30734;Parent=MsG0380016875.01.T01 |
Chr3 | CDS | 88896284 | 88896433 | 88896284 | ID=MsG0380016875.01.T01:cds;Parent=MsG0380016875.01.T01 |
Chr3 | CDS | 88895803 | 88896099 | 88895803 | ID=MsG0380016875.01.T01:cds;Parent=MsG0380016875.01.T01 |
Gene Sequence |
Protein sequence |