AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016968.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016968.01.T01 MTR_3g099020 97.158 387 10 1 1 386 1 387 0.0 774
MsG0380016968.01.T01 MTR_4g112970 52.313 281 126 3 102 382 126 398 1.24e-102 310
MsG0380016968.01.T01 MTR_1g109110 43.871 310 124 6 102 382 82 370 2.01e-77 244
MsG0380016968.01.T01 MTR_7g056233 39.423 312 171 5 88 382 56 366 2.38e-76 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016968.01.T01 AT1G08510 55.872 281 116 3 102 382 130 402 9.17e-108 323
MsG0380016968.01.T01 AT3G25110 41.608 286 161 3 102 382 75 359 2.68e-77 243
MsG0380016968.01.T01 AT4G13050 39.661 295 166 5 102 385 74 367 9.93e-76 239

Find 65 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAAGTGGACACAATTAA+TGG 0.213280 3:-90120191 MsG0380016968.01.T01:CDS
GTTATTAGGTCCTATGAAAT+TGG 0.286137 3:-90120041 MsG0380016968.01.T01:CDS
GCAATCTTGTGAAGGTAAAA+AGG 0.295317 3:+90119207 None:intergenic
TCTATTGATTGAATTATTAT+CGG 0.321338 3:+90117758 None:intergenic
CTAAATCATGTTACAAGCTC+TGG 0.322289 3:-90119706 MsG0380016968.01.T01:CDS
CAAGCTTGACATTAGAGTTT+AGG 0.339075 3:-90117848 MsG0380016968.01.T01:CDS
ACATTAGTTTACAAGGGAAT+TGG 0.345514 3:-90120370 MsG0380016968.01.T01:CDS
TGAGCCTAAGGAAACTCATT+TGG 0.347394 3:-90119648 MsG0380016968.01.T01:CDS
GATGTTGCTCTTGTTACAAA+TGG 0.353240 3:-90120104 MsG0380016968.01.T01:CDS
GGGATAGGAGGAGATGGATT+TGG 0.362524 3:-90119685 MsG0380016968.01.T01:CDS
TCCATGGTAGCAGTTCTATC+TGG 0.363190 3:+90120017 None:intergenic
TTGAAGGAAGGTTTGTGTTT+AGG 0.363251 3:-90120073 MsG0380016968.01.T01:CDS
TCTATCTGGACCAATTTCAT+AGG 0.414482 3:+90120031 None:intergenic
GTGATTACAAATTGTAATCA+TGG 0.416314 3:-90120224 MsG0380016968.01.T01:CDS
GATCAACACAAAGAAGGCTT+TGG 0.438422 3:-90120318 MsG0380016968.01.T01:CDS
AAGAAATTGAAATTGATACT+TGG 0.442643 3:-90119485 MsG0380016968.01.T01:CDS
GAGCCTAAGGAAACTCATTT+GGG 0.450636 3:-90119647 MsG0380016968.01.T01:CDS
TGCCTTAGTTATGATCTCCT+TGG 0.455238 3:+90119404 None:intergenic
AGATGTGTATATTGCTGATC+GGG 0.457539 3:+90117732 None:intergenic
TCACCAATCACTCTTTCTGT+TGG 0.465994 3:+90117783 None:intergenic
AGAAATTGAAATTGATACTT+GGG 0.473173 3:-90119484 MsG0380016968.01.T01:CDS
CAACCCAAATGAGTTTCCTT+AGG 0.476925 3:+90119644 None:intergenic
ATCAGCAACATTAGTTTACA+AGG 0.478909 3:-90120377 MsG0380016968.01.T01:CDS
ATGGGAGATTTGTTGAAGGA+AGG 0.479142 3:-90120085 MsG0380016968.01.T01:CDS
GAATGTGAGCAATGCAAAGA+AGG 0.493810 3:-90120348 MsG0380016968.01.T01:CDS
GTGGATGCAGCAGGAAAGAA+TGG 0.503767 3:-90119462 MsG0380016968.01.T01:CDS
ATGTTGCTCTTGTTACAAAT+GGG 0.508572 3:-90120103 MsG0380016968.01.T01:CDS
GATACTTGGGTGGATGCAGC+AGG 0.512312 3:-90119471 MsG0380016968.01.T01:CDS
TGTCCAACAGAAAGAGTGAT+TGG 0.513252 3:-90117786 MsG0380016968.01.T01:CDS
ATTAATGGAACAAAGGTGAA+TGG 0.513373 3:-90120176 MsG0380016968.01.T01:CDS
TGAGAGAATACAATCTGGTT+TGG 0.514880 3:-90119127 MsG0380016968.01.T01:CDS
TCTTTCTGTTGGACATGTCA+AGG 0.515470 3:+90117794 None:intergenic
AGAATGGAATGCGAAGAGAT+TGG 0.516352 3:-90119446 MsG0380016968.01.T01:CDS
TCCAGATAGAACTGCTACCA+TGG 0.517690 3:-90120018 MsG0380016968.01.T01:CDS
CAACACAAAGAAGGCTTTGG+AGG 0.518895 3:-90120315 MsG0380016968.01.T01:CDS
ATTTCACATTGTTCACATGC+TGG 0.522323 3:+90118087 None:intergenic
ATGAAAATCTTCGTTTGTTG+TGG 0.528344 3:+90120249 None:intergenic
TACCAAGGAGATCATAACTA+AGG 0.534432 3:-90119406 MsG0380016968.01.T01:CDS
TAAATCATGTTACAAGCTCT+GGG 0.534439 3:-90119705 MsG0380016968.01.T01:CDS
AAGTACAGAGATACAACAAA+TGG 0.541558 3:-90119603 MsG0380016968.01.T01:intron
AGCTCTGGGATAGGAGGAGA+TGG 0.547009 3:-90119691 MsG0380016968.01.T01:CDS
CATGTTACAAGCTCTGGGAT+AGG 0.551503 3:-90119700 MsG0380016968.01.T01:CDS
TTGTTCGAGCTAGATCTGAA+TGG 0.554018 3:-90117680 MsG0380016968.01.T01:CDS
AAATATGATCAACACAAAGA+AGG 0.557480 3:-90120324 MsG0380016968.01.T01:CDS
GTGAACAATGTGAAATACAT+TGG 0.558503 3:-90118080 MsG0380016968.01.T01:CDS
AAAATTCATGAGTGTCTCCA+TGG 0.562904 3:+90120001 None:intergenic
GTTACAAGCTCTGGGATAGG+AGG 0.564203 3:-90119697 MsG0380016968.01.T01:CDS
ACAAATGGGAGATTTGTTGA+AGG 0.566686 3:-90120089 MsG0380016968.01.T01:CDS
ACAATGTGAAATACATTGGA+TGG 0.571892 3:-90118076 MsG0380016968.01.T01:CDS
CAGATGTGTATATTGCTGAT+CGG 0.574750 3:+90117731 None:intergenic
AATTGAAATTGATACTTGGG+TGG 0.581420 3:-90119481 MsG0380016968.01.T01:CDS
GAATGGCTTACTAGTGGCAG+AGG 0.582646 3:-90120159 MsG0380016968.01.T01:CDS
CAACTCGCGAGATGAGCCTA+AGG 0.586466 3:-90119660 MsG0380016968.01.T01:CDS
ACTGCTGAGAGAATACAATC+TGG 0.588100 3:-90119132 MsG0380016968.01.T01:CDS
ACATCCATGTCATTCCACCT+TGG 0.618207 3:+90118113 None:intergenic
GGACACAATTAATGGAACAA+AGG 0.619362 3:-90120183 MsG0380016968.01.T01:CDS
TAGCTACAGCAATCTTGTGA+AGG 0.626622 3:+90119199 None:intergenic
ACAGCCAAGGTGGAATGACA+TGG 0.628611 3:-90118117 MsG0380016968.01.T01:intron
ATGTACACAATCAAATACGT+TGG 0.641412 3:-90117820 MsG0380016968.01.T01:CDS
AGATCATAACTAAGGCAACA+AGG 0.652831 3:-90119398 MsG0380016968.01.T01:intron
TTGTCTTTGATTCAGCACAT+GGG 0.654833 3:-90119295 MsG0380016968.01.T01:intron
AAAGGTGAATGGCTTACTAG+TGG 0.656952 3:-90120165 MsG0380016968.01.T01:CDS
TCTATGTAATACAGCCAAGG+TGG 0.666187 3:-90118127 MsG0380016968.01.T01:intron
TCAGCAACATTAGTTTACAA+GGG 0.678038 3:-90120376 MsG0380016968.01.T01:CDS
AATCAGAGATCGTTGTACCA+AGG 0.681451 3:-90119421 MsG0380016968.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTATTAACATATTATT+TGG + Chr3:90118725-90118744 None:intergenic 10.0%
!! AATTTCATGAAAAAAAATGA+TGG - Chr3:90120015-90120034 MsG0380016968.01.T01:CDS 15.0%
!!! TCTATTGATTGAATTATTAT+CGG + Chr3:90120287-90120306 None:intergenic 15.0%
!!! TTATCTAATGTGTTATTTAA+GGG + Chr3:90119342-90119361 None:intergenic 15.0%
!!! TTTATCTAATGTGTTATTTA+AGG + Chr3:90119343-90119362 None:intergenic 15.0%
!!! TTTATTTTATTTTTTTGAGC+CGG - Chr3:90118243-90118262 MsG0380016968.01.T01:intron 15.0%
!! AAGAAATTGAAATTGATACT+TGG - Chr3:90118557-90118576 MsG0380016968.01.T01:intron 20.0%
!! AGAAATTGAAATTGATACTT+GGG - Chr3:90118558-90118577 MsG0380016968.01.T01:intron 20.0%
!! CAATTATGTATAATTATGCA+AGG + Chr3:90118497-90118516 None:intergenic 20.0%
!!! ATCTCTTTAGTTTTTTTTTC+TGG + Chr3:90119807-90119826 None:intergenic 20.0%
!!! GGAAATGGAAAATATTTTTT+AGG - Chr3:90118305-90118324 MsG0380016968.01.T01:intron 20.0%
!!! TAATCTTCTAGTACTTTTAT+TGG + Chr3:90120166-90120185 None:intergenic 20.0%
!!! TTTTCATTTAGCAATTTTCT+AGG + Chr3:90117911-90117930 None:intergenic 20.0%
! AAATATGATCAACACAAAGA+AGG - Chr3:90117718-90117737 MsG0380016968.01.T01:CDS 25.0%
! ATGTATAATTATGCAAGGTA+GGG + Chr3:90118492-90118511 None:intergenic 25.0%
! GTGATTACAAATTGTAATCA+TGG - Chr3:90117818-90117837 MsG0380016968.01.T01:CDS 25.0%
! TATGTATAATTATGCAAGGT+AGG + Chr3:90118493-90118512 None:intergenic 25.0%
! TGAAAATGATAAGTTTGACA+GGG - Chr3:90118531-90118550 MsG0380016968.01.T01:intron 25.0%
! TTGAAAAATAAACTTGAACC+AGG + Chr3:90118959-90118978 None:intergenic 25.0%
! TTGATTGTTACACATAATCA+CGG - Chr3:90119043-90119062 MsG0380016968.01.T01:intron 25.0%
!! CTATTTTCTCTACGTTATTA+AGG - Chr3:90119259-90119278 MsG0380016968.01.T01:CDS 25.0%
!!! GTTTTAACTAACATAAAGCA+TGG - Chr3:90118273-90118292 MsG0380016968.01.T01:intron 25.0%
!!! TTAGGCAGATTTTTGTTATT+AGG - Chr3:90117987-90118006 MsG0380016968.01.T01:intron 25.0%
!!! TTTAGTTTTTTTTTCTGGAC+CGG + Chr3:90119802-90119821 None:intergenic 25.0%
AAATTTAGGAAGCGACTAAT+CGG + Chr3:90119001-90119020 None:intergenic 30.0%
AAGTACAGAGATACAACAAA+TGG - Chr3:90118439-90118458 MsG0380016968.01.T01:intron 30.0%
AATTGAAATTGATACTTGGG+TGG - Chr3:90118561-90118580 MsG0380016968.01.T01:intron 30.0%
ACAATGTGAAATACATTGGA+TGG - Chr3:90119966-90119985 MsG0380016968.01.T01:intron 30.0%
ATCATCAAAACTACAACCTA+AGG + Chr3:90119876-90119895 None:intergenic 30.0%
ATGTACACAATCAAATACGT+TGG - Chr3:90120222-90120241 MsG0380016968.01.T01:CDS 30.0%
ATGTTGCTCTTGTTACAAAT+GGG - Chr3:90117939-90117958 MsG0380016968.01.T01:intron 30.0%
ATTAATGGAACAAAGGTGAA+TGG - Chr3:90117866-90117885 MsG0380016968.01.T01:CDS 30.0%
CATAAAGTGGACACAATTAA+TGG - Chr3:90117851-90117870 MsG0380016968.01.T01:CDS 30.0%
CATGAAACTTGATTCACATT+TGG - Chr3:90118147-90118166 MsG0380016968.01.T01:intron 30.0%
CTGAAAATGATAAGTTTGAC+AGG - Chr3:90118530-90118549 MsG0380016968.01.T01:intron 30.0%
CTGTAAGTTTATTTCATACC+TGG - Chr3:90118938-90118957 MsG0380016968.01.T01:intron 30.0%
GAAAATGATAAGTTTGACAG+GGG - Chr3:90118532-90118551 MsG0380016968.01.T01:intron 30.0%
GAACAATTGTGTTGTACTTT+CGG - Chr3:90119135-90119154 MsG0380016968.01.T01:CDS 30.0%
GAAGTGAAGAAAGCAAATTT+AGG + Chr3:90119015-90119034 None:intergenic 30.0%
GGATGAGACATTTAACATAA+TGG - Chr3:90119548-90119567 MsG0380016968.01.T01:intron 30.0%
GTGAACAATGTGAAATACAT+TGG - Chr3:90119962-90119981 MsG0380016968.01.T01:intron 30.0%
GTTAGTTAAAACAGCAAATC+CGG + Chr3:90118265-90118284 None:intergenic 30.0%
GTTATTAGGTCCTATGAAAT+TGG - Chr3:90118001-90118020 MsG0380016968.01.T01:intron 30.0%
TAAATCATGTTACAAGCTCT+GGG - Chr3:90118337-90118356 MsG0380016968.01.T01:intron 30.0%
! AAATCTTTTCTACGTCGAAA+TGG - Chr3:90119222-90119241 MsG0380016968.01.T01:CDS 30.0%
! ACATTAGTTTACAAGGGAAT+TGG - Chr3:90117672-90117691 MsG0380016968.01.T01:CDS 30.0%
! ATCAGCAACATTAGTTTACA+AGG - Chr3:90117665-90117684 MsG0380016968.01.T01:CDS 30.0%
! ATGAAAATCTTCGTTTGTTG+TGG + Chr3:90117796-90117815 None:intergenic 30.0%
! CAACAAACGAAGATTTTCAT+TGG - Chr3:90117796-90117815 MsG0380016968.01.T01:CDS 30.0%
! TCAGCAACATTAGTTTACAA+GGG - Chr3:90117666-90117685 MsG0380016968.01.T01:CDS 30.0%
! TGGTAGTACTTTTCATAAAG+TGG - Chr3:90117838-90117857 MsG0380016968.01.T01:CDS 30.0%
!! AAGTCAGATTTTGAGTAAGA+TGG - Chr3:90119527-90119546 MsG0380016968.01.T01:intron 30.0%
!! ATACATTGGATGGATTTTAG+AGG - Chr3:90119976-90119995 MsG0380016968.01.T01:intron 30.0%
!! ATTATGTGCTGATTGATTGT+TGG - Chr3:90119694-90119713 MsG0380016968.01.T01:CDS 30.0%
!! TGAAAAGCAAAACTGATTTG+AGG - Chr3:90119407-90119426 MsG0380016968.01.T01:CDS 30.0%
AAAATTCATGAGTGTCTCCA+TGG + Chr3:90118044-90118063 None:intergenic 35.0%
AACACAACGATTGATCATGT+AGG + Chr3:90118200-90118219 None:intergenic 35.0%
ACTTCATTAAGGATTGAGCT+TGG - Chr3:90119774-90119793 MsG0380016968.01.T01:intron 35.0%
AGATCATAACTAAGGCAACA+AGG - Chr3:90118644-90118663 MsG0380016968.01.T01:intron 35.0%
AGATGTGTATATTGCTGATC+GGG + Chr3:90120313-90120332 None:intergenic 35.0%
ATTTCACATTGTTCACATGC+TGG + Chr3:90119958-90119977 None:intergenic 35.0%
CAAGCTTGACATTAGAGTTT+AGG - Chr3:90120194-90120213 MsG0380016968.01.T01:CDS 35.0%
CAAGTTTCATGTTATACGTG+TGG + Chr3:90118138-90118157 None:intergenic 35.0%
CAGATGTGTATATTGCTGAT+CGG + Chr3:90120314-90120333 None:intergenic 35.0%
CATAAAGCATGGATGAACTA+AGG - Chr3:90118284-90118303 MsG0380016968.01.T01:intron 35.0%
CTAAATCATGTTACAAGCTC+TGG - Chr3:90118336-90118355 MsG0380016968.01.T01:intron 35.0%
CTCTGTAGTAGACTTCATTA+AGG - Chr3:90119763-90119782 MsG0380016968.01.T01:intron 35.0%
CTTAATGAAGTCTACTACAG+AGG + Chr3:90119765-90119784 None:intergenic 35.0%
CTTCATTAAGGATTGAGCTT+GGG - Chr3:90119775-90119794 MsG0380016968.01.T01:intron 35.0%
GATGTTGCTCTTGTTACAAA+TGG - Chr3:90117938-90117957 MsG0380016968.01.T01:intron 35.0%
GCAATCTTGTGAAGGTAAAA+AGG + Chr3:90118838-90118857 None:intergenic 35.0%
GGACACAATTAATGGAACAA+AGG - Chr3:90117859-90117878 MsG0380016968.01.T01:CDS 35.0%
TACCAAGGAGATCATAACTA+AGG - Chr3:90118636-90118655 MsG0380016968.01.T01:intron 35.0%
TCTATCTGGACCAATTTCAT+AGG + Chr3:90118014-90118033 None:intergenic 35.0%
TGAGAGAATACAATCTGGTT+TGG - Chr3:90118915-90118934 MsG0380016968.01.T01:intron 35.0%
TTCTCTATGTAATACAGCCA+AGG - Chr3:90119912-90119931 MsG0380016968.01.T01:intron 35.0%
TTGAAGGAAGGTTTGTGTTT+AGG - Chr3:90117969-90117988 MsG0380016968.01.T01:intron 35.0%
TTGTCTTTGATTCAGCACAT+GGG - Chr3:90118747-90118766 MsG0380016968.01.T01:intron 35.0%
TTTGTCTTTGATTCAGCACA+TGG - Chr3:90118746-90118765 MsG0380016968.01.T01:intron 35.0%
! AGCTCTTTTCTAACTTCTTC+AGG + Chr3:90118811-90118830 None:intergenic 35.0%
! GACACTCATGAATTTTCTTC+AGG - Chr3:90118048-90118067 MsG0380016968.01.T01:intron 35.0%
!! AAAGCAAAACTGATTTGAGG+TGG - Chr3:90119410-90119429 MsG0380016968.01.T01:CDS 35.0%
!! ACAAATGGGAGATTTGTTGA+AGG - Chr3:90117953-90117972 MsG0380016968.01.T01:intron 35.0%
AAAGGTGAATGGCTTACTAG+TGG - Chr3:90117877-90117896 MsG0380016968.01.T01:CDS 40.0%
AATCAGAGATCGTTGTACCA+AGG - Chr3:90118621-90118640 MsG0380016968.01.T01:intron 40.0%
AATGTGTACGTTTCTCCTAG+TGG - Chr3:90119571-90119590 MsG0380016968.01.T01:intron 40.0%
ACTGCTGAGAGAATACAATC+TGG - Chr3:90118910-90118929 MsG0380016968.01.T01:intron 40.0%
AGAATGGAATGCGAAGAGAT+TGG - Chr3:90118596-90118615 MsG0380016968.01.T01:intron 40.0%
CAACCCAAATGAGTTTCCTT+AGG + Chr3:90118401-90118420 None:intergenic 40.0%
CGTGAAACTCTACCTATGAA+AGG + Chr3:90119603-90119622 None:intergenic 40.0%
GAATGTGAGCAATGCAAAGA+AGG - Chr3:90117694-90117713 MsG0380016968.01.T01:CDS 40.0%
GAATTTGGCTAAACCTGTTG+AGG - Chr3:90119624-90119643 MsG0380016968.01.T01:CDS 40.0%
GAGCCTAAGGAAACTCATTT+GGG - Chr3:90118395-90118414 MsG0380016968.01.T01:intron 40.0%
GATCAACACAAAGAAGGCTT+TGG - Chr3:90117724-90117743 MsG0380016968.01.T01:CDS 40.0%
GCATGGATGAACTAAGGAAA+TGG - Chr3:90118290-90118309 MsG0380016968.01.T01:intron 40.0%
GGTAGAGTTTCACGAGAATT+TGG - Chr3:90119609-90119628 MsG0380016968.01.T01:CDS 40.0%
TAGCTACAGCAATCTTGTGA+AGG + Chr3:90118846-90118865 None:intergenic 40.0%
TCACCAATCACTCTTTCTGT+TGG + Chr3:90120262-90120281 None:intergenic 40.0%
TCCACATGTTCAAACACCTT+AGG - Chr3:90119857-90119876 MsG0380016968.01.T01:intron 40.0%
TCTATGTAATACAGCCAAGG+TGG - Chr3:90119915-90119934 MsG0380016968.01.T01:intron 40.0%
TCTTTCTGTTGGACATGTCA+AGG + Chr3:90120251-90120270 None:intergenic 40.0%
TGAGCCTAAGGAAACTCATT+TGG - Chr3:90118394-90118413 MsG0380016968.01.T01:intron 40.0%
TGCCTTAGTTATGATCTCCT+TGG + Chr3:90118641-90118660 None:intergenic 40.0%
TGTCCAACAGAAAGAGTGAT+TGG - Chr3:90120256-90120275 MsG0380016968.01.T01:CDS 40.0%
TTGTTCGAGCTAGATCTGAA+TGG - Chr3:90120362-90120381 MsG0380016968.01.T01:CDS 40.0%
! ACCTAAGGTGTTTGAACATG+TGG + Chr3:90119861-90119880 None:intergenic 40.0%
!! ATGGGAGATTTGTTGAAGGA+AGG - Chr3:90117957-90117976 MsG0380016968.01.T01:intron 40.0%
!! TGTGCTGATTGATTGTTGGA+CGG - Chr3:90119698-90119717 MsG0380016968.01.T01:CDS 40.0%
ACATCCATGTCATTCCACCT+TGG + Chr3:90119932-90119951 None:intergenic 45.0%
CCACGCAAAGAATCTCTCAA+CGG + Chr3:90119650-90119669 None:intergenic 45.0%
TCCAGATAGAACTGCTACCA+TGG - Chr3:90118024-90118043 MsG0380016968.01.T01:intron 45.0%
TCCATGGTAGCAGTTCTATC+TGG + Chr3:90118028-90118047 None:intergenic 45.0%
TGTTTGCATGTACAACACCC+CGG + Chr3:90119496-90119515 None:intergenic 45.0%
TTAAGGATTGAGCTTGGGTC+CGG - Chr3:90119780-90119799 MsG0380016968.01.T01:intron 45.0%
! CAACACAAAGAAGGCTTTGG+AGG - Chr3:90117727-90117746 MsG0380016968.01.T01:CDS 45.0%
!! CATGTTACAAGCTCTGGGAT+AGG - Chr3:90118342-90118361 MsG0380016968.01.T01:intron 45.0%
!! GAGTTGATGAAACGCAACTG+AGG - Chr3:90119450-90119469 MsG0380016968.01.T01:CDS 45.0%
AATCTCTCAACGGCCTCAAC+AGG + Chr3:90119640-90119659 None:intergenic 50.0%
ACAGCCAAGGTGGAATGACA+TGG - Chr3:90119925-90119944 MsG0380016968.01.T01:intron 50.0%
ATTGTTGGACGGATACGCTC+AGG - Chr3:90119709-90119728 MsG0380016968.01.T01:CDS 50.0%
CCGTTGAGAGATTCTTTGCG+TGG - Chr3:90119647-90119666 MsG0380016968.01.T01:CDS 50.0%
GAATGGCTTACTAGTGGCAG+AGG - Chr3:90117883-90117902 MsG0380016968.01.T01:CDS 50.0%
GAGATTCTTTGCGTGGTTCG+CGG - Chr3:90119654-90119673 MsG0380016968.01.T01:CDS 50.0%
GTGGATGCAGCAGGAAAGAA+TGG - Chr3:90118580-90118599 MsG0380016968.01.T01:intron 50.0%
GTGTACGTTTCTCCTAGTGG+CGG - Chr3:90119574-90119593 MsG0380016968.01.T01:intron 50.0%
TAGTGGCGGTGTCCTTTCAT+AGG - Chr3:90119588-90119607 MsG0380016968.01.T01:intron 50.0%
TATGAAAGGACACCGCCACT+AGG + Chr3:90119589-90119608 None:intergenic 50.0%
TGAAACGCAACTGAGGACGA+TGG - Chr3:90119457-90119476 MsG0380016968.01.T01:CDS 50.0%
! GGGATAGGAGGAGATGGATT+TGG - Chr3:90118357-90118376 MsG0380016968.01.T01:intron 50.0%
!! GGTGGACTGAGATCGACAAT+CGG - Chr3:90119428-90119447 MsG0380016968.01.T01:CDS 50.0%
!! GTTACAAGCTCTGGGATAGG+AGG - Chr3:90118345-90118364 MsG0380016968.01.T01:intron 50.0%
AGGACGATGGCTGAGCTCTT+CGG - Chr3:90119470-90119489 MsG0380016968.01.T01:CDS 55.0%
CAACTCGCGAGATGAGCCTA+AGG - Chr3:90118382-90118401 MsG0380016968.01.T01:intron 55.0%
GATACTTGGGTGGATGCAGC+AGG - Chr3:90118571-90118590 MsG0380016968.01.T01:intron 55.0%
!! AGCTCTGGGATAGGAGGAGA+TGG - Chr3:90118351-90118370 MsG0380016968.01.T01:intron 55.0%
GCTCAGGCATGCTAGCAGTG+CGG - Chr3:90119725-90119744 MsG0380016968.01.T01:intron 60.0%
! CTACTACAGAGGCGCACGCT+AGG + Chr3:90119754-90119773 None:intergenic 60.0%
ATGGCTGAGCTCTTCGGCCG+GGG - Chr3:90119476-90119495 MsG0380016968.01.T01:CDS 65.0%
CGATGGCTGAGCTCTTCGGC+CGG - Chr3:90119474-90119493 MsG0380016968.01.T01:CDS 65.0%
GATGGCTGAGCTCTTCGGCC+GGG - Chr3:90119475-90119494 MsG0380016968.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90117656 90120408 90117656 ID=MsG0380016968.01;Name=MsG0380016968.01
Chr3 mRNA 90117656 90120408 90117656 ID=MsG0380016968.01.T01;Parent=MsG0380016968.01;Name=MsG0380016968.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|6|0|386
Chr3 exon 90119995 90120408 90119995 ID=MsG0380016968.01.T01:exon:25307;Parent=MsG0380016968.01.T01
Chr3 exon 90119604 90119737 90119604 ID=MsG0380016968.01.T01:exon:25306;Parent=MsG0380016968.01.T01
Chr3 exon 90119399 90119512 90119399 ID=MsG0380016968.01.T01:exon:25305;Parent=MsG0380016968.01.T01
Chr3 exon 90119125 90119302 90119125 ID=MsG0380016968.01.T01:exon:25304;Parent=MsG0380016968.01.T01
Chr3 exon 90118067 90118135 90118067 ID=MsG0380016968.01.T01:exon:25303;Parent=MsG0380016968.01.T01
Chr3 exon 90117656 90117907 90117656 ID=MsG0380016968.01.T01:exon:25302;Parent=MsG0380016968.01.T01
Chr3 CDS 90119995 90120408 90119995 ID=MsG0380016968.01.T01:cds;Parent=MsG0380016968.01.T01
Chr3 CDS 90119604 90119737 90119604 ID=MsG0380016968.01.T01:cds;Parent=MsG0380016968.01.T01
Chr3 CDS 90119399 90119512 90119399 ID=MsG0380016968.01.T01:cds;Parent=MsG0380016968.01.T01
Chr3 CDS 90119125 90119302 90119125 ID=MsG0380016968.01.T01:cds;Parent=MsG0380016968.01.T01
Chr3 CDS 90118067 90118135 90118067 ID=MsG0380016968.01.T01:cds;Parent=MsG0380016968.01.T01
Chr3 CDS 90117656 90117907 90117656 ID=MsG0380016968.01.T01:cds;Parent=MsG0380016968.01.T01
Gene Sequence

>MsG0380016968.01.T01

ATGGCAACAATCAGCAACATTAGTTTACAAGGGAATTGGAATGTGAGCAATGCAAAGAAGGAAAATATGATCAACACAAAGAAGGCTTTGGAGGTGAATTTTAATTCTTCTCATCAAAACAATGACACATTGAACAACCACAACAAACGAAGATTTTCATTGGTGATTACAAATTGTAATCATGGTAGTACTTTTCATAAAGTGGACACAATTAATGGAACAAAGGTGAATGGCTTACTAGTGGCAGAGGCTCCTAGAAAATTGCTAAATGAAAATACAACAGATGTTGCTCTTGTTACAAATGGGAGATTTGTTGAAGGAAGGTTTGTGTTTAGGCAGATTTTTGTTATTAGGTCCTATGAAATTGGTCCAGATAGAACTGCTACCATGGAGACACTCATGAATTTTCTTCAGGAAACTGCTCTAAATCATGTTACAAGCTCTGGGATAGGAGGAGATGGATTTGGAGCAACTCGCGAGATGAGCCTAAGGAAACTCATTTGGGTTGTTACTCGTATTCAAGTTCAAGTACAGAGATACAACAAATGGGGAGAAGAAATTGAAATTGATACTTGGGTGGATGCAGCAGGAAAGAATGGAATGCGAAGAGATTGGATAATCAGAGATCGTTGTACCAAGGAGATCATAACTAAGGCAACAAGCACATGGGTGATAATGAATAGAGAAACGAGAAGACTATCAAAGATACCTGAAGAAGTTAGAAAAGAGCTTACTCCTTTTTACCTTCACAAGATTGCTGTAGCTAGTGAAGAAAGAGATTGTGAAAAGATAGACAAGCTCACTGATGACACTGCTGAGAGAATACAATCTGGTTTGGCTCCAAGGTGGAATGACATGGATGTTAACCAGCATGTGAACAATGTGAAATACATTGGATGGATTTTAGAGAGTGTGCCAATAAAAGTACTAGAAGATTATAACATGACAAGCTTGACATTAGAGTTTAGGCGTGAATGTACACAATCAAATACGTTGGAATCCTTGACATGTCCAACAGAAAGAGTGATTGGTGAATCCGATAATAATTCAATCAATAGAAAACCCGATCAGCAATATACACATCTGCTTCGTCTACAAGATGATCAAAAAGATGTTGTTCGAGCTAGATCTGAATGGAATTTAAAGCAAAATCAACAATGA
Protein sequence

>MsG0380016968.01.T01

MATISNISLQGNWNVSNAKKENMINTKKALEVNFNSSHQNNDTLNNHNKRRFSLVITNCNHGSTFHKVDTINGTKVNGLLVAEAPRKLLNENTTDVALVTNGRFVEGRFVFRQIFVIRSYEIGPDRTATMETLMNFLQETALNHVTSSGIGGDGFGATREMSLRKLIWVVTRIQVQVQRYNKWGEEIEIDTWVDAAGKNGMRRDWIIRDRCTKEIITKATSTWVIMNRETRRLSKIPEEVRKELTPFYLHKIAVASEERDCEKIDKLTDDTAERIQSGLAPRWNDMDVNQHVNNVKYIGWILESVPIKVLEDYNMTSLTLEFRRECTQSNTLESLTCPTERVIGESDNNSINRKPDQQYTHLLRLQDDQKDVVRARSEWNLKQNQQ*