Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017036.01.T01 | KEH35718.1 | 98.044 | 409 | 8 | 0 | 1 | 409 | 119 | 527 | 0 | 834 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017036.01.T01 | Q3E911 | 57.286 | 398 | 164 | 2 | 1 | 394 | 96 | 491 | 3.48E-159 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017036.01.T01 | A0A072V2Y1 | 98.044 | 409 | 8 | 0 | 1 | 409 | 119 | 527 | 0.0 | 834 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011662.01 | MsG0380017036.01 | 0.815364 | 9.603557e-52 | 6.607577e-49 |
| MsG0380017036.01 | MsG0480023616.01 | 0.803751 | 3.001328e-49 | 1.520438e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004769.01 | MsG0380017036.01 | PPI |
| MsG0380017036.01 | MsG0880045294.01 | PPI |
| MsG0080048902.01 | MsG0380017036.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017036.01.T01 | MTR_3g099753 | 98.044 | 409 | 8 | 0 | 1 | 409 | 119 | 527 | 0.0 | 834 |
| MsG0380017036.01.T01 | MTR_3g099753 | 98.044 | 409 | 8 | 0 | 1 | 409 | 95 | 503 | 0.0 | 832 |
| MsG0380017036.01.T01 | MTR_1g072300 | 31.373 | 408 | 270 | 5 | 1 | 404 | 95 | 496 | 3.52e-66 | 219 |
| MsG0380017036.01.T01 | MTR_8g007375 | 28.536 | 403 | 276 | 4 | 5 | 404 | 6 | 399 | 5.35e-64 | 211 |
| MsG0380017036.01.T01 | MTR_8g059115 | 32.051 | 390 | 261 | 3 | 9 | 397 | 9 | 395 | 9.81e-63 | 207 |
| MsG0380017036.01.T01 | MTR_8g069570 | 31.304 | 345 | 233 | 2 | 12 | 354 | 91 | 433 | 3.31e-57 | 195 |
| MsG0380017036.01.T01 | MTR_8g465890 | 29.032 | 403 | 262 | 9 | 1 | 392 | 85 | 474 | 1.09e-48 | 172 |
| MsG0380017036.01.T01 | MTR_2g047855 | 30.168 | 358 | 235 | 7 | 1 | 352 | 89 | 437 | 7.56e-48 | 170 |
| MsG0380017036.01.T01 | MTR_2g013450 | 27.387 | 398 | 285 | 3 | 9 | 405 | 94 | 488 | 8.56e-47 | 167 |
| MsG0380017036.01.T01 | MTR_1g086820 | 28.198 | 344 | 235 | 4 | 13 | 352 | 100 | 435 | 1.21e-42 | 156 |
| MsG0380017036.01.T01 | MTR_2g090290 | 29.268 | 369 | 248 | 5 | 12 | 372 | 101 | 464 | 4.70e-41 | 152 |
| MsG0380017036.01.T01 | MTR_1g022400 | 28.328 | 293 | 206 | 3 | 1 | 291 | 112 | 402 | 2.01e-40 | 148 |
| MsG0380017036.01.T01 | MTR_8g031520 | 32.593 | 135 | 89 | 1 | 5 | 139 | 167 | 299 | 2.79e-21 | 93.6 |
| MsG0380017036.01.T01 | MTR_7g089770 | 23.632 | 402 | 281 | 9 | 1 | 394 | 214 | 597 | 5.70e-20 | 92.4 |
| MsG0380017036.01.T01 | MTR_1g050750 | 23.940 | 401 | 281 | 11 | 1 | 394 | 148 | 531 | 4.65e-17 | 83.6 |
| MsG0380017036.01.T01 | MTR_8g031510 | 25.882 | 170 | 122 | 1 | 235 | 404 | 1 | 166 | 1.06e-15 | 75.1 |
| MsG0380017036.01.T01 | MTR_2g096880 | 20.197 | 406 | 316 | 5 | 4 | 405 | 104 | 505 | 3.32e-15 | 77.8 |
| MsG0380017036.01.T01 | MTR_8g054410 | 24.176 | 273 | 202 | 3 | 46 | 317 | 214 | 482 | 1.45e-12 | 69.7 |
| MsG0380017036.01.T01 | MTR_1g048080 | 25.217 | 230 | 166 | 4 | 14 | 241 | 622 | 847 | 5.60e-11 | 65.1 |
| MsG0380017036.01.T01 | MTR_8g039270 | 22.393 | 326 | 241 | 5 | 50 | 373 | 171 | 486 | 7.66e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017036.01.T01 | AT5G27460 | 57.286 | 398 | 164 | 2 | 1 | 394 | 96 | 491 | 3.55e-160 | 460 |
| MsG0380017036.01.T01 | AT1G02150 | 33.235 | 340 | 222 | 2 | 5 | 344 | 130 | 464 | 1.14e-69 | 229 |
| MsG0380017036.01.T01 | AT4G02820 | 31.841 | 402 | 268 | 4 | 4 | 405 | 122 | 517 | 3.50e-66 | 220 |
| MsG0380017036.01.T01 | AT1G60770 | 31.738 | 397 | 264 | 4 | 12 | 404 | 91 | 484 | 3.08e-62 | 208 |
| MsG0380017036.01.T01 | AT1G02370 | 28.186 | 408 | 282 | 4 | 4 | 405 | 131 | 533 | 1.33e-57 | 197 |
| MsG0380017036.01.T01 | AT4G21705 | 28.643 | 398 | 280 | 3 | 9 | 404 | 91 | 486 | 7.35e-56 | 192 |
| MsG0380017036.01.T01 | AT4G01990 | 28.354 | 395 | 276 | 3 | 12 | 404 | 108 | 497 | 1.66e-52 | 183 |
| MsG0380017036.01.T01 | AT2G20710 | 30.946 | 349 | 236 | 4 | 1 | 348 | 1 | 345 | 3.61e-49 | 171 |
| MsG0380017036.01.T01 | AT2G20710 | 30.946 | 349 | 236 | 4 | 1 | 348 | 96 | 440 | 2.01e-48 | 172 |
| MsG0380017036.01.T01 | AT5G09450 | 29.225 | 284 | 196 | 4 | 1 | 281 | 113 | 394 | 1.39e-37 | 141 |
| MsG0380017036.01.T01 | AT1G28020 | 30.545 | 275 | 179 | 4 | 11 | 279 | 104 | 372 | 1.30e-32 | 129 |
| MsG0380017036.01.T01 | AT1G80270 | 22.589 | 394 | 292 | 8 | 1 | 392 | 186 | 568 | 2.51e-21 | 96.7 |
| MsG0380017036.01.T01 | AT1G80270 | 22.589 | 394 | 292 | 8 | 1 | 392 | 186 | 568 | 2.51e-21 | 96.7 |
| MsG0380017036.01.T01 | AT1G80270 | 22.589 | 394 | 292 | 8 | 1 | 392 | 186 | 568 | 2.51e-21 | 96.7 |
| MsG0380017036.01.T01 | AT1G80270 | 22.589 | 394 | 292 | 8 | 1 | 392 | 186 | 568 | 2.51e-21 | 96.7 |
| MsG0380017036.01.T01 | AT1G80270 | 22.589 | 394 | 292 | 8 | 1 | 392 | 186 | 568 | 2.51e-21 | 96.7 |
| MsG0380017036.01.T01 | AT1G15480 | 22.613 | 398 | 288 | 10 | 2 | 394 | 186 | 568 | 3.03e-18 | 87.4 |
| MsG0380017036.01.T01 | AT3G11380 | 26.667 | 285 | 171 | 7 | 4 | 284 | 103 | 353 | 1.62e-15 | 79.0 |
| MsG0380017036.01.T01 | AT2G31400 | 25.194 | 258 | 189 | 3 | 46 | 302 | 270 | 524 | 3.51e-14 | 75.1 |
| MsG0380017036.01.T01 | AT2G31400 | 25.194 | 258 | 189 | 3 | 46 | 302 | 270 | 524 | 3.63e-14 | 75.1 |
| MsG0380017036.01.T01 | AT3G15590 | 22.165 | 388 | 291 | 6 | 6 | 392 | 204 | 581 | 5.08e-13 | 71.2 |
| MsG0380017036.01.T01 | AT3G15590 | 22.165 | 388 | 291 | 6 | 6 | 392 | 204 | 581 | 5.08e-13 | 71.2 |
| MsG0380017036.01.T01 | AT3G06920 | 21.642 | 268 | 204 | 5 | 45 | 311 | 183 | 445 | 3.92e-12 | 68.6 |
| MsG0380017036.01.T01 | AT3G06920 | 21.642 | 268 | 204 | 5 | 45 | 311 | 183 | 445 | 3.92e-12 | 68.6 |
| MsG0380017036.01.T01 | AT2G32630 | 23.656 | 279 | 190 | 7 | 44 | 312 | 294 | 559 | 3.98e-12 | 68.6 |
| MsG0380017036.01.T01 | AT3G06920 | 21.642 | 268 | 204 | 5 | 45 | 311 | 169 | 431 | 4.37e-12 | 68.6 |
| MsG0380017036.01.T01 | AT1G07590 | 21.182 | 406 | 312 | 6 | 4 | 405 | 126 | 527 | 4.95e-12 | 68.2 |
| MsG0380017036.01.T01 | AT5G14770 | 19.672 | 305 | 223 | 5 | 62 | 362 | 181 | 467 | 7.55e-11 | 64.7 |
| MsG0380017036.01.T01 | AT5G14770 | 19.672 | 305 | 223 | 5 | 62 | 362 | 181 | 467 | 7.55e-11 | 64.7 |
| MsG0380017036.01.T01 | AT5G14770 | 19.672 | 305 | 223 | 5 | 62 | 362 | 181 | 467 | 7.55e-11 | 64.7 |
| MsG0380017036.01.T01 | AT5G14770 | 19.672 | 305 | 223 | 5 | 62 | 362 | 181 | 467 | 7.55e-11 | 64.7 |
| MsG0380017036.01.T01 | AT5G14770 | 19.672 | 305 | 223 | 5 | 62 | 362 | 181 | 467 | 7.55e-11 | 64.7 |
Find 93 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACTGTTTCCATTCTTAA+AGG | 0.176026 | 3:+91051045 | MsG0380017036.01.T01:CDS |
| ATTAGCCATAGCTGAATATT+TGG | 0.185459 | 3:+91050852 | MsG0380017036.01.T01:CDS |
| AGTTTCATCATTTCATTATA+AGG | 0.208074 | 3:-91050091 | None:intergenic |
| TCTTCCACCAACTGCCTTAC+TGG | 0.224446 | 3:-91050485 | None:intergenic |
| CCATTCTCTGAAGATTCTTC+TGG | 0.238798 | 3:-91050572 | None:intergenic |
| CATGAACGTCTCAGCTTTAC+TGG | 0.276241 | 3:-91050029 | None:intergenic |
| ATCACAGATATTCATAATTT+AGG | 0.309949 | 3:+91050910 | MsG0380017036.01.T01:CDS |
| ATTTCCCACGTCTTGTAGTT+TGG | 0.313223 | 3:-91050718 | None:intergenic |
| AATGATCAATAAAGACAAAA+TGG | 0.322417 | 3:+91051011 | MsG0380017036.01.T01:CDS |
| GTTTCATCATTTCATTATAA+GGG | 0.337687 | 3:-91050090 | None:intergenic |
| GATATTCATAATTTAGGTCT+TGG | 0.351730 | 3:+91050916 | MsG0380017036.01.T01:CDS |
| TGTGATGAGGGAGAGCGATA+TGG | 0.373547 | 3:+91050220 | MsG0380017036.01.T01:CDS |
| AAATGATGAGAATGTTGAAA+TGG | 0.383490 | 3:+91050279 | MsG0380017036.01.T01:CDS |
| CCCAGTGAAGCCTTTAAGAA+TGG | 0.389532 | 3:-91051055 | None:intergenic |
| ATGTTCTGTCTTACAACCTT+TGG | 0.391181 | 3:+91050188 | MsG0380017036.01.T01:CDS |
| CATGGAGAAGCTCTATGAAC+TGG | 0.396411 | 3:+91050048 | MsG0380017036.01.T01:CDS |
| TATTGCCATGAAAAGAGCTT+TGG | 0.402179 | 3:+91050786 | MsG0380017036.01.T01:CDS |
| AACTTCAGAGCATGATCAGC+TGG | 0.404901 | 3:-91049881 | None:intergenic |
| TCCATTCTTAAAGGCTTCAC+TGG | 0.406952 | 3:+91051054 | MsG0380017036.01.T01:CDS |
| TAACAAGCTTGGTGAAGCTT+GGG | 0.412299 | 3:+91050536 | MsG0380017036.01.T01:CDS |
| CTTAAAGGCTTCACTGGGTA+AGG | 0.413189 | 3:+91051060 | MsG0380017036.01.T01:CDS |
| AGGAGGGAGTCTTGCGGCTG+TGG | 0.422261 | 3:+91050458 | MsG0380017036.01.T01:CDS |
| GCTTTCTTTCCAGCTGAGTC+AGG | 0.427827 | 3:-91049962 | None:intergenic |
| CAGTAAAGCTGAGACGTTCA+TGG | 0.430914 | 3:+91050030 | MsG0380017036.01.T01:CDS |
| TCATTGAAGGATATGTCAAT+TGG | 0.432642 | 3:+91050743 | MsG0380017036.01.T01:CDS |
| TGTTAGTATGCAAATATAGT+TGG | 0.439822 | 3:-91050518 | None:intergenic |
| CCAGAAGAATCTTCAGAGAA+TGG | 0.455350 | 3:+91050572 | MsG0380017036.01.T01:CDS |
| GTGATGAGGGAGAGCGATAT+GGG | 0.460171 | 3:+91050221 | MsG0380017036.01.T01:CDS |
| ACATGTAGACAGTTTCTCTT+CGG | 0.461851 | 3:-91050383 | None:intergenic |
| AATGATGAGAATGTTGAAAT+GGG | 0.468069 | 3:+91050280 | MsG0380017036.01.T01:CDS |
| AGCTGATCATGCTCTGAAGT+TGG | 0.470813 | 3:+91049883 | MsG0380017036.01.T01:CDS |
| GCCACGTAGAAGTGGGAGAT+AGG | 0.471094 | 3:-91049987 | None:intergenic |
| CTAACAAGCTTGGTGAAGCT+TGG | 0.471247 | 3:+91050535 | MsG0380017036.01.T01:CDS |
| CAGAAGAATCTTCAGAGAAT+GGG | 0.472581 | 3:+91050573 | MsG0380017036.01.T01:CDS |
| CTGAATATTTGGAGAAATGT+GGG | 0.476542 | 3:+91050863 | MsG0380017036.01.T01:CDS |
| GGATAACTAGGGGTACCTTT+CGG | 0.478712 | 3:-91050135 | None:intergenic |
| GCGGCTGTGGGAAGCCAGTA+AGG | 0.479826 | 3:+91050471 | MsG0380017036.01.T01:CDS |
| GTTGTAAGACAGAACATTCA+AGG | 0.484662 | 3:-91050182 | None:intergenic |
| CTATGTTGAAAGACTGCCAT+TGG | 0.497964 | 3:+91050809 | MsG0380017036.01.T01:CDS |
| CCACTTCTACGTGGCTATGT+AGG | 0.500824 | 3:+91049995 | MsG0380017036.01.T01:CDS |
| ATACGCCTCTTTGAAGCAAA+AGG | 0.504517 | 3:+91050438 | MsG0380017036.01.T01:CDS |
| ATATGTCAATTGGCAAAAGA+TGG | 0.504962 | 3:+91050753 | MsG0380017036.01.T01:CDS |
| ACGTGGGAAATTCTCATTGA+AGG | 0.506864 | 3:+91050730 | MsG0380017036.01.T01:CDS |
| TTCTTTGTGGCGGCCTCCAA+TGG | 0.509216 | 3:-91050825 | None:intergenic |
| GCCAATGTGTATATGAAAGC+AGG | 0.509662 | 3:+91050325 | MsG0380017036.01.T01:CDS |
| ATGGCTAATACAATTCTTTG+TGG | 0.512455 | 3:-91050838 | None:intergenic |
| TTTCTCCAAATATTCAGCTA+TGG | 0.517860 | 3:-91050857 | None:intergenic |
| ATGCGTATACCTGACTCAGC+TGG | 0.523390 | 3:+91049953 | MsG0380017036.01.T01:CDS |
| CCATTCTTAAAGGCTTCACT+GGG | 0.526110 | 3:+91051055 | MsG0380017036.01.T01:CDS |
| GCGATATGGGGTTGCAGCAG+TGG | 0.527736 | 3:+91050234 | MsG0380017036.01.T01:CDS |
| GCTGAATATTTGGAGAAATG+TGG | 0.530476 | 3:+91050862 | MsG0380017036.01.T01:CDS |
| TGGATGAGTGCTTGTGATGA+GGG | 0.538983 | 3:+91050208 | MsG0380017036.01.T01:CDS |
| TACGTGGCTATGTAGGAGAT+AGG | 0.544359 | 3:+91050002 | MsG0380017036.01.T01:CDS |
| CAATAAAGACAAAATGGAGA+TGG | 0.549030 | 3:+91051017 | MsG0380017036.01.T01:CDS |
| TGTTGAAAGACTGCCATTGG+AGG | 0.555843 | 3:+91050812 | MsG0380017036.01.T01:CDS |
| TATTTGCATACTAACAAGCT+TGG | 0.557592 | 3:+91050525 | MsG0380017036.01.T01:CDS |
| ATGAGAATGTTGAAATGGGA+TGG | 0.563565 | 3:+91050284 | MsG0380017036.01.T01:CDS |
| TCCTGCTTTCATATACACAT+TGG | 0.565526 | 3:-91050326 | None:intergenic |
| TTAGGAGCATATGTGCGGAA+TGG | 0.567056 | 3:+91050640 | MsG0380017036.01.T01:CDS |
| GCATCTCCACACATTGCAGA+AGG | 0.568052 | 3:+91050687 | MsG0380017036.01.T01:CDS |
| ATGGAGAAGCTCTATGAACT+GGG | 0.568445 | 3:+91050049 | MsG0380017036.01.T01:CDS |
| CTGTCTACATGTAATCGTCT+TGG | 0.569357 | 3:+91050394 | MsG0380017036.01.T01:CDS |
| CATGATCAGCTGGGTTTATG+CGG | 0.572059 | 3:-91049871 | None:intergenic |
| GAAGCCAGTAAGGCAGTTGG+TGG | 0.575582 | 3:+91050481 | MsG0380017036.01.T01:CDS |
| GCTCTATGAACTGGGGCTAG+TGG | 0.575872 | 3:+91050057 | MsG0380017036.01.T01:CDS |
| CGCCTCTTTGAAGCAAAAGG+AGG | 0.583122 | 3:+91050441 | MsG0380017036.01.T01:CDS |
| TTGGATGAGTGCTTGTGATG+AGG | 0.583463 | 3:+91050207 | MsG0380017036.01.T01:CDS |
| CCTACATAGCCACGTAGAAG+TGG | 0.584375 | 3:-91049995 | None:intergenic |
| ACTTCAGAGCATGATCAGCT+GGG | 0.585003 | 3:-91049880 | None:intergenic |
| ACGTGGCTATGTAGGAGATA+GGG | 0.597576 | 3:+91050003 | MsG0380017036.01.T01:CDS |
| GGAGGGAGTCTTGCGGCTGT+GGG | 0.599301 | 3:+91050459 | MsG0380017036.01.T01:CDS |
| CATCACAAGCACTCATCCAA+AGG | 0.605501 | 3:-91050204 | None:intergenic |
| TTTATTTGTTGGATAACTAG+GGG | 0.607266 | 3:-91050145 | None:intergenic |
| GCTAATACAATTCTTTGTGG+CGG | 0.610024 | 3:-91050835 | None:intergenic |
| AGCCACCCTTCTGCAATGTG+TGG | 0.612657 | 3:-91050693 | None:intergenic |
| GCCTCTTTGAAGCAAAAGGA+GGG | 0.615558 | 3:+91050442 | MsG0380017036.01.T01:CDS |
| AACAAGCTTGGTGAAGCTTG+GGG | 0.626479 | 3:+91050537 | MsG0380017036.01.T01:CDS |
| TGGGAAGCCAGTAAGGCAGT+TGG | 0.629575 | 3:+91050478 | MsG0380017036.01.T01:CDS |
| CATCTCCACACATTGCAGAA+GGG | 0.629974 | 3:+91050688 | MsG0380017036.01.T01:CDS |
| CTCCACACATTGCAGAAGGG+TGG | 0.631048 | 3:+91050691 | MsG0380017036.01.T01:CDS |
| TTGTAAGACAGAACATTCAA+GGG | 0.631305 | 3:-91050181 | None:intergenic |
| CTACATAGCCACGTAGAAGT+GGG | 0.632992 | 3:-91049994 | None:intergenic |
| GCTGTCCAAACTACAAGACG+TGG | 0.636885 | 3:+91050713 | MsG0380017036.01.T01:CDS |
| TACCTTTCGGTACTCACATG+TGG | 0.641449 | 3:-91050122 | None:intergenic |
| CAATTGGCAAAAGATGGATG+AGG | 0.660417 | 3:+91050759 | MsG0380017036.01.T01:CDS |
| ACGTAGAAGTGGGAGATAGG+CGG | 0.666086 | 3:-91049984 | None:intergenic |
| AAGGTGGTTCTTGAGCAGAA+AGG | 0.666643 | 3:-91050975 | None:intergenic |
| AGCAAAAGGAGGGAGTCTTG+CGG | 0.669308 | 3:+91050452 | MsG0380017036.01.T01:CDS |
| TGCCACATGTGAGTACCGAA+AGG | 0.679332 | 3:+91050120 | MsG0380017036.01.T01:CDS |
| GCCTATCTCCCACTTCTACG+TGG | 0.702332 | 3:+91049986 | MsG0380017036.01.T01:CDS |
| TGGAGAAGCTCTATGAACTG+GGG | 0.707353 | 3:+91050050 | MsG0380017036.01.T01:CDS |
| CTGTCCAAACTACAAGACGT+GGG | 0.720216 | 3:+91050714 | MsG0380017036.01.T01:CDS |
| TGATGAGGGAGAGCGATATG+GGG | 0.743042 | 3:+91050222 | MsG0380017036.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATCAATAAAGACAAAA+TGG | + | Chr3:91051011-91051030 | MsG0380017036.01.T01:CDS | 20.0% |
| !! | AGTTTCATCATTTCATTATA+AGG | - | Chr3:91050094-91050113 | None:intergenic | 20.0% |
| !! | ATCACAGATATTCATAATTT+AGG | + | Chr3:91050910-91050929 | MsG0380017036.01.T01:CDS | 20.0% |
| !! | GTTTCATCATTTCATTATAA+GGG | - | Chr3:91050093-91050112 | None:intergenic | 20.0% |
| !!! | CTTTATTTCGTTTTATTTGT+TGG | - | Chr3:91050159-91050178 | None:intergenic | 20.0% |
| !!! | TGTCTTTATTGATCATTTTA+AGG | - | Chr3:91051008-91051027 | None:intergenic | 20.0% |
| !!! | TTTTATTTGTTGGATAACTA+GGG | - | Chr3:91050149-91050168 | None:intergenic | 20.0% |
| ! | AAATGATGAGAATGTTGAAA+TGG | + | Chr3:91050279-91050298 | MsG0380017036.01.T01:CDS | 25.0% |
| ! | AATGATGAGAATGTTGAAAT+GGG | + | Chr3:91050280-91050299 | MsG0380017036.01.T01:CDS | 25.0% |
| ! | GATATTCATAATTTAGGTCT+TGG | + | Chr3:91050916-91050935 | MsG0380017036.01.T01:CDS | 25.0% |
| ! | TGTTAGTATGCAAATATAGT+TGG | - | Chr3:91050521-91050540 | None:intergenic | 25.0% |
| !! | TTTATTTGTTGGATAACTAG+GGG | - | Chr3:91050148-91050167 | None:intergenic | 25.0% |
| !!! | GTTTTATTTGTTGGATAACT+AGG | - | Chr3:91050150-91050169 | None:intergenic | 25.0% |
| !!! | TATTGATCATTTTAAGGACA+TGG | - | Chr3:91051002-91051021 | None:intergenic | 25.0% |
| AGTTAATCGCTAAAAACTGT+GGG | + | Chr3:91049906-91049925 | MsG0380017036.01.T01:CDS | 30.0% | |
| ATATGTCAATTGGCAAAAGA+TGG | + | Chr3:91050753-91050772 | MsG0380017036.01.T01:CDS | 30.0% | |
| ATGGCTAATACAATTCTTTG+TGG | - | Chr3:91050841-91050860 | None:intergenic | 30.0% | |
| ATTAGCCATAGCTGAATATT+TGG | + | Chr3:91050852-91050871 | MsG0380017036.01.T01:CDS | 30.0% | |
| CAATAAAGACAAAATGGAGA+TGG | + | Chr3:91051017-91051036 | MsG0380017036.01.T01:CDS | 30.0% | |
| CTGAATATTTGGAGAAATGT+GGG | + | Chr3:91050863-91050882 | MsG0380017036.01.T01:CDS | 30.0% | |
| TATTTGCATACTAACAAGCT+TGG | + | Chr3:91050525-91050544 | MsG0380017036.01.T01:CDS | 30.0% | |
| TCATTGAAGGATATGTCAAT+TGG | + | Chr3:91050743-91050762 | MsG0380017036.01.T01:CDS | 30.0% | |
| TTGTAAGACAGAACATTCAA+GGG | - | Chr3:91050184-91050203 | None:intergenic | 30.0% | |
| TTTCTCCAAATATTCAGCTA+TGG | - | Chr3:91050860-91050879 | None:intergenic | 30.0% | |
| ! | AGAGTCTCTAATGTTCTTTT+AGG | + | Chr3:91050622-91050641 | MsG0380017036.01.T01:CDS | 30.0% |
| !! | ATCATTTTAAGGACATGGAA+AGG | - | Chr3:91050997-91051016 | None:intergenic | 30.0% |
| !!! | GGCATTTTTTAGAACTAGAA+TGG | - | Chr3:91050365-91050384 | None:intergenic | 30.0% |
| ACATGTAGACAGTTTCTCTT+CGG | - | Chr3:91050386-91050405 | None:intergenic | 35.0% | |
| ATGAGAATGTTGAAATGGGA+TGG | + | Chr3:91050284-91050303 | MsG0380017036.01.T01:CDS | 35.0% | |
| ATGTTCTGTCTTACAACCTT+TGG | + | Chr3:91050188-91050207 | MsG0380017036.01.T01:CDS | 35.0% | |
| CAGAAGAATCTTCAGAGAAT+GGG | + | Chr3:91050573-91050592 | MsG0380017036.01.T01:CDS | 35.0% | |
| GAGACTGTTTCCATTCTTAA+AGG | + | Chr3:91051045-91051064 | MsG0380017036.01.T01:CDS | 35.0% | |
| GAGTTAATCGCTAAAAACTG+TGG | + | Chr3:91049905-91049924 | MsG0380017036.01.T01:CDS | 35.0% | |
| GCTAATACAATTCTTTGTGG+CGG | - | Chr3:91050838-91050857 | None:intergenic | 35.0% | |
| GCTGAATATTTGGAGAAATG+TGG | + | Chr3:91050862-91050881 | MsG0380017036.01.T01:CDS | 35.0% | |
| GTTGTAAGACAGAACATTCA+AGG | - | Chr3:91050185-91050204 | None:intergenic | 35.0% | |
| TATTGCCATGAAAAGAGCTT+TGG | + | Chr3:91050786-91050805 | MsG0380017036.01.T01:CDS | 35.0% | |
| TCCTGCTTTCATATACACAT+TGG | - | Chr3:91050329-91050348 | None:intergenic | 35.0% | |
| ! | GGTTTATGCGGAATTTTTGT+TGG | - | Chr3:91049862-91049881 | None:intergenic | 35.0% |
| !! | ATTTTAAGGACATGGAAAGG+TGG | - | Chr3:91050994-91051013 | None:intergenic | 35.0% |
| !! | TTCTTTTAGGAGCATATGTG+CGG | + | Chr3:91050635-91050654 | MsG0380017036.01.T01:CDS | 35.0% |
| ACGTGGGAAATTCTCATTGA+AGG | + | Chr3:91050730-91050749 | MsG0380017036.01.T01:CDS | 40.0% | |
| ATGGAGAAGCTCTATGAACT+GGG | + | Chr3:91050049-91050068 | MsG0380017036.01.T01:CDS | 40.0% | |
| ATTTCCCACGTCTTGTAGTT+TGG | - | Chr3:91050721-91050740 | None:intergenic | 40.0% | |
| CAATTGGCAAAAGATGGATG+AGG | + | Chr3:91050759-91050778 | MsG0380017036.01.T01:CDS | 40.0% | |
| CCAGAAGAATCTTCAGAGAA+TGG | + | Chr3:91050572-91050591 | MsG0380017036.01.T01:CDS | 40.0% | |
| CCATTCTTAAAGGCTTCACT+GGG | + | Chr3:91051055-91051074 | MsG0380017036.01.T01:CDS | 40.0% | |
| CTATGTTGAAAGACTGCCAT+TGG | + | Chr3:91050809-91050828 | MsG0380017036.01.T01:CDS | 40.0% | |
| CTGTCTACATGTAATCGTCT+TGG | + | Chr3:91050394-91050413 | MsG0380017036.01.T01:CDS | 40.0% | |
| GCCAATGTGTATATGAAAGC+AGG | + | Chr3:91050325-91050344 | MsG0380017036.01.T01:CDS | 40.0% | |
| TCCATTCTTAAAGGCTTCAC+TGG | + | Chr3:91051054-91051073 | MsG0380017036.01.T01:CDS | 40.0% | |
| ! | CATAGCCAAAGCTCTTTTCA+TGG | - | Chr3:91050794-91050813 | None:intergenic | 40.0% |
| ! | CCATTCTCTGAAGATTCTTC+TGG | - | Chr3:91050575-91050594 | None:intergenic | 40.0% |
| ! | TAACAAGCTTGGTGAAGCTT+GGG | + | Chr3:91050536-91050555 | MsG0380017036.01.T01:CDS | 40.0% |
| !! | ATACGCCTCTTTGAAGCAAA+AGG | + | Chr3:91050438-91050457 | MsG0380017036.01.T01:CDS | 40.0% |
| AACTTCAGAGCATGATCAGC+TGG | - | Chr3:91049884-91049903 | None:intergenic | 45.0% | |
| AAGGTGGTTCTTGAGCAGAA+AGG | - | Chr3:91050978-91050997 | None:intergenic | 45.0% | |
| ACGTGGCTATGTAGGAGATA+GGG | + | Chr3:91050003-91050022 | MsG0380017036.01.T01:CDS | 45.0% | |
| ACTTCAGAGCATGATCAGCT+GGG | - | Chr3:91049883-91049902 | None:intergenic | 45.0% | |
| CAGTAAAGCTGAGACGTTCA+TGG | + | Chr3:91050030-91050049 | MsG0380017036.01.T01:CDS | 45.0% | |
| CATCACAAGCACTCATCCAA+AGG | - | Chr3:91050207-91050226 | None:intergenic | 45.0% | |
| CATCTCCACACATTGCAGAA+GGG | + | Chr3:91050688-91050707 | MsG0380017036.01.T01:CDS | 45.0% | |
| CATGAACGTCTCAGCTTTAC+TGG | - | Chr3:91050032-91050051 | None:intergenic | 45.0% | |
| CATGATCAGCTGGGTTTATG+CGG | - | Chr3:91049874-91049893 | None:intergenic | 45.0% | |
| CATGGAGAAGCTCTATGAAC+TGG | + | Chr3:91050048-91050067 | MsG0380017036.01.T01:CDS | 45.0% | |
| CTACATAGCCACGTAGAAGT+GGG | - | Chr3:91049997-91050016 | None:intergenic | 45.0% | |
| CTGTCCAAACTACAAGACGT+GGG | + | Chr3:91050714-91050733 | MsG0380017036.01.T01:CDS | 45.0% | |
| TACCTTTCGGTACTCACATG+TGG | - | Chr3:91050125-91050144 | None:intergenic | 45.0% | |
| TACGTGGCTATGTAGGAGAT+AGG | + | Chr3:91050002-91050021 | MsG0380017036.01.T01:CDS | 45.0% | |
| TGGAGAAGCTCTATGAACTG+GGG | + | Chr3:91050050-91050069 | MsG0380017036.01.T01:CDS | 45.0% | |
| TGGATGAGTGCTTGTGATGA+GGG | + | Chr3:91050208-91050227 | MsG0380017036.01.T01:CDS | 45.0% | |
| TGTTGAAAGACTGCCATTGG+AGG | + | Chr3:91050812-91050831 | MsG0380017036.01.T01:CDS | 45.0% | |
| TTGGATGAGTGCTTGTGATG+AGG | + | Chr3:91050207-91050226 | MsG0380017036.01.T01:CDS | 45.0% | |
| ! | AACAAGCTTGGTGAAGCTTG+GGG | + | Chr3:91050537-91050556 | MsG0380017036.01.T01:CDS | 45.0% |
| ! | CCCAGTGAAGCCTTTAAGAA+TGG | - | Chr3:91051058-91051077 | None:intergenic | 45.0% |
| ! | CGCTAAAAACTGTGGGCTAA+TGG | + | Chr3:91049913-91049932 | MsG0380017036.01.T01:CDS | 45.0% |
| ! | CTAACAAGCTTGGTGAAGCT+TGG | + | Chr3:91050535-91050554 | MsG0380017036.01.T01:CDS | 45.0% |
| ! | TCCCTCCTTTTGCTTCAAAG+AGG | - | Chr3:91050446-91050465 | None:intergenic | 45.0% |
| ! | TTAGGAGCATATGTGCGGAA+TGG | + | Chr3:91050640-91050659 | MsG0380017036.01.T01:CDS | 45.0% |
| !! | AGCTGATCATGCTCTGAAGT+TGG | + | Chr3:91049883-91049902 | MsG0380017036.01.T01:CDS | 45.0% |
| !! | GCCTCTTTGAAGCAAAAGGA+GGG | + | Chr3:91050442-91050461 | MsG0380017036.01.T01:CDS | 45.0% |
| !! | GGATAACTAGGGGTACCTTT+CGG | - | Chr3:91050138-91050157 | None:intergenic | 45.0% |
| ACGTAGAAGTGGGAGATAGG+CGG | - | Chr3:91049987-91050006 | None:intergenic | 50.0% | |
| AGCAAAAGGAGGGAGTCTTG+CGG | + | Chr3:91050452-91050471 | MsG0380017036.01.T01:CDS | 50.0% | |
| ATGCGTATACCTGACTCAGC+TGG | + | Chr3:91049953-91049972 | MsG0380017036.01.T01:CDS | 50.0% | |
| CCACTTCTACGTGGCTATGT+AGG | + | Chr3:91049995-91050014 | MsG0380017036.01.T01:CDS | 50.0% | |
| CCTACATAGCCACGTAGAAG+TGG | - | Chr3:91049998-91050017 | None:intergenic | 50.0% | |
| GCATCTCCACACATTGCAGA+AGG | + | Chr3:91050687-91050706 | MsG0380017036.01.T01:CDS | 50.0% | |
| GCTGTCCAAACTACAAGACG+TGG | + | Chr3:91050713-91050732 | MsG0380017036.01.T01:CDS | 50.0% | |
| GCTTTCTTTCCAGCTGAGTC+AGG | - | Chr3:91049965-91049984 | None:intergenic | 50.0% | |
| GTGATGAGGGAGAGCGATAT+GGG | + | Chr3:91050221-91050240 | MsG0380017036.01.T01:CDS | 50.0% | |
| TCTTCCACCAACTGCCTTAC+TGG | - | Chr3:91050488-91050507 | None:intergenic | 50.0% | |
| TGATGAGGGAGAGCGATATG+GGG | + | Chr3:91050222-91050241 | MsG0380017036.01.T01:CDS | 50.0% | |
| TGTGATGAGGGAGAGCGATA+TGG | + | Chr3:91050220-91050239 | MsG0380017036.01.T01:CDS | 50.0% | |
| !! | CGCCTCTTTGAAGCAAAAGG+AGG | + | Chr3:91050441-91050460 | MsG0380017036.01.T01:CDS | 50.0% |
| !! | TGCCACATGTGAGTACCGAA+AGG | + | Chr3:91050120-91050139 | MsG0380017036.01.T01:CDS | 50.0% |
| AGCCACCCTTCTGCAATGTG+TGG | - | Chr3:91050696-91050715 | None:intergenic | 55.0% | |
| CTCCACACATTGCAGAAGGG+TGG | + | Chr3:91050691-91050710 | MsG0380017036.01.T01:CDS | 55.0% | |
| GAAGCCAGTAAGGCAGTTGG+TGG | + | Chr3:91050481-91050500 | MsG0380017036.01.T01:CDS | 55.0% | |
| GCCACGTAGAAGTGGGAGAT+AGG | - | Chr3:91049990-91050009 | None:intergenic | 55.0% | |
| GCCTATCTCCCACTTCTACG+TGG | + | Chr3:91049986-91050005 | MsG0380017036.01.T01:CDS | 55.0% | |
| GCTCTATGAACTGGGGCTAG+TGG | + | Chr3:91050057-91050076 | MsG0380017036.01.T01:CDS | 55.0% | |
| TGGGAAGCCAGTAAGGCAGT+TGG | + | Chr3:91050478-91050497 | MsG0380017036.01.T01:CDS | 55.0% | |
| TTCTTTGTGGCGGCCTCCAA+TGG | - | Chr3:91050828-91050847 | None:intergenic | 55.0% | |
| GCGATATGGGGTTGCAGCAG+TGG | + | Chr3:91050234-91050253 | MsG0380017036.01.T01:CDS | 60.0% | |
| AGGAGGGAGTCTTGCGGCTG+TGG | + | Chr3:91050458-91050477 | MsG0380017036.01.T01:CDS | 65.0% | |
| GCGGCTGTGGGAAGCCAGTA+AGG | + | Chr3:91050471-91050490 | MsG0380017036.01.T01:CDS | 65.0% | |
| GGAGGGAGTCTTGCGGCTGT+GGG | + | Chr3:91050459-91050478 | MsG0380017036.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 91049851 | 91051080 | 91049851 | ID=MsG0380017036.01;Name=MsG0380017036.01 |
| Chr3 | mRNA | 91049851 | 91051080 | 91049851 | ID=MsG0380017036.01.T01;Parent=MsG0380017036.01;Name=MsG0380017036.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|409 |
| Chr3 | exon | 91049851 | 91051080 | 91049851 | ID=MsG0380017036.01.T01:exon:5171;Parent=MsG0380017036.01.T01 |
| Chr3 | CDS | 91049851 | 91051080 | 91049851 | ID=MsG0380017036.01.T01:cds;Parent=MsG0380017036.01.T01 |
| Gene Sequence |
| Protein sequence |
