AlfalfaGEDB | MsG0480023616.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023616.01

KEGG: -
GO: GO:0003676
PFAM: PF00575

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023616.01.T01	XP_013447012.1	88.546	908	34	7	1	858	1	888	0	1554

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023616.01.T01	Q9JZ44	30.303	132	92	0	605	736	136	267	1.87E-12	74.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023616.01.T01	A0A072TU38	88.546	908	34	7	1	858	1	888	0.0	1554

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0480023616.01	0.807114	5.919825e-50	3.269491e-47
MsG0080047989.01	MsG0480023616.01	0.821543	3.819288e-53	3.116318e-50
MsG0080048068.01	MsG0480023616.01	0.831703	1.435904e-55	1.570688e-52
MsG0080048085.01	MsG0480023616.01	0.813667	2.279403e-51	1.497850e-48
MsG0080048191.01	MsG0480023616.01	0.821870	3.208157e-53	2.642115e-50
MsG0080048198.01	MsG0480023616.01	0.844044	9.648389e-59	1.538680e-55
MsG0080048273.01	MsG0480023616.01	0.865962	4.034298e-65	1.337084e-61
MsG0080048274.01	MsG0480023616.01	0.858421	8.336684e-63	2.126493e-59
MsG0080048505.01	MsG0480023616.01	0.812671	3.770700e-51	2.412211e-48
MsG0080048528.01	MsG0480023616.01	0.889508	2.274827e-73	1.840665e-69

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023616.01.T01	MTR_8g097290	88.546	908	34	7	1	858	1	888	0.0	1554
MsG0480023616.01.T01	MTR_3g084860	25.692	253	157	7	617	857	165	398	5.53e-12	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023616.01.T01	AT1G12800	43.504	839	339	21	42	858	42	767	0.0	570
MsG0480023616.01.T01	AT3G23700	25.498	251	139	9	616	841	157	384	3.38e-11	66.6

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Find 167 sgRNAs with CRISPR-Local

Find 670 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACCTCAAAAGCAGT+TGG	0.562077	4:-87692010	MsG0480023616.01.T01:CDS
AAAGAAAGGAAATTGAGCTG+TGG	0.679459	4:+87693761	None:intergenic
AAAGCCGTCTTTGTATAATG+AGG	0.622243	4:-87693054	MsG0480023616.01.T01:CDS
AAAGTAGAAGAAGAGAAGTT+TGG	0.349842	4:-87692378	MsG0480023616.01.T01:CDS
AAATTACCTCCCAAACCCCA+AGG	0.648859	4:-87693197	MsG0480023616.01.T01:CDS
AAATTTGAGACTTCATCACT+TGG	0.552757	4:+87692519	None:intergenic
AACATTCCCGGGTTTCCGCA+GGG	0.548649	4:+87693109	None:intergenic
AACTCCTTAGAGTCTGTAGT+TGG	0.511792	4:-87689284	MsG0480023616.01.T01:CDS
AACTTCTCGACTTCATCACT+CGG	0.585095	4:+87692684	None:intergenic
AAGATAAGATGCATCAGGGT+TGG	0.554730	4:+87693310	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACAATGACATGCTTA+AGG	+	Chr4:87690141-87690160	None:intergenic	30.0%
AAAAGGAATACAAATGAGAG+GGG	+	Chr4:87693265-87693284	None:intergenic	30.0%
AAAATACAACTAATAGGTGG+TGG	-	Chr4:87690733-87690752	MsG0480023616.01.T01:intron	30.0%
AAAGTAGAAGAAGAGAAGTT+TGG	-	Chr4:87686612-87686631	MsG0480023616.01.T01:intron	30.0%
AACATTTCATAAACCATACG+GGG	+	Chr4:87692754-87692773	None:intergenic	30.0%
AAGAAAAAAGGGAAAAGTTG+TGG	-	Chr4:87685726-87685745	MsG0480023616.01.T01:intron	30.0%
AAGATTCTTTATTGTGAACC+GGG	-	Chr4:87689028-87689047	MsG0480023616.01.T01:intron	30.0%
ACAAAGTTGACAAAAAGAAG+TGG	-	Chr4:87688963-87688982	MsG0480023616.01.T01:intron	30.0%
ACACCCACCTAAAATTATTA+AGG	-	Chr4:87689963-87689982	MsG0480023616.01.T01:intron	30.0%
ACGTTATTTATGAACATGGA+AGG	+	Chr4:87693006-87693025	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	87685110	87693902	87685110	ID=MsG0480023616.01;Name=MsG0480023616.01
Chr4	mRNA	87685110	87693902	87685110	ID=MsG0480023616.01.T01;Parent=MsG0480023616.01;Name=MsG0480023616.01.T01;_AED=0.40;_eAED=0.40;_QI=76\|0.76\|0.78\|1\|0.76\|0.78\|14\|0\|858
Chr4	exon	87685110	87685220	87685110	ID=MsG0480023616.01.T01:exon:21454;Parent=MsG0480023616.01.T01
Chr4	exon	87685819	87685887	87685819	ID=MsG0480023616.01.T01:exon:21453;Parent=MsG0480023616.01.T01
Chr4	exon	87686391	87686498	87686391	ID=MsG0480023616.01.T01:exon:21452;Parent=MsG0480023616.01.T01
Chr4	exon	87689232	87689321	87689232	ID=MsG0480023616.01.T01:exon:21451;Parent=MsG0480023616.01.T01
Chr4	exon	87689413	87689484	87689413	ID=MsG0480023616.01.T01:exon:21450;Parent=MsG0480023616.01.T01
Chr4	exon	87690641	87690727	87690641	ID=MsG0480023616.01.T01:exon:21449;Parent=MsG0480023616.01.T01
Chr4	exon	87690933	87691004	87690933	ID=MsG0480023616.01.T01:exon:21448;Parent=MsG0480023616.01.T01
Chr4	exon	87691109	87691216	87691109	ID=MsG0480023616.01.T01:exon:21447;Parent=MsG0480023616.01.T01
Chr4	exon	87691334	87691633	87691334	ID=MsG0480023616.01.T01:exon:21446;Parent=MsG0480023616.01.T01
Chr4	exon	87691744	87691815	87691744	ID=MsG0480023616.01.T01:exon:21445;Parent=MsG0480023616.01.T01
Chr4	exon	87691928	87692048	87691928	ID=MsG0480023616.01.T01:exon:21444;Parent=MsG0480023616.01.T01
Chr4	exon	87692132	87692268	87692132	ID=MsG0480023616.01.T01:exon:21443;Parent=MsG0480023616.01.T01
Chr4	exon	87692374	87693348	87692374	ID=MsG0480023616.01.T01:exon:21442;Parent=MsG0480023616.01.T01
Chr4	exon	87693572	87693902	87693572	ID=MsG0480023616.01.T01:exon:21441;Parent=MsG0480023616.01.T01
Chr4	five_prime_UTR	87693827	87693902	87693827	ID=MsG0480023616.01.T01:five_prime_utr;Parent=MsG0480023616.01.T01
Chr4	CDS	87693572	87693826	87693572	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87692374	87693348	87692374	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87692132	87692268	87692132	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87691928	87692048	87691928	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87691744	87691815	87691744	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87691334	87691633	87691334	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87691109	87691216	87691109	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87690933	87691004	87690933	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87690641	87690727	87690641	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87689413	87689484	87689413	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87689232	87689321	87689232	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87686391	87686498	87686391	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87685819	87685887	87685819	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01
Chr4	CDS	87685110	87685220	87685110	ID=MsG0480023616.01.T01:cds;Parent=MsG0480023616.01.T01

Gene Sequence

>MsG0480023616.01.T01

ATGGGGTCTCTTCCTCTCACTAGTAAAACCTCATTCCTCACTACCACAGCTCAATTTCCTTTCTTTTCATCATCAAATAATAGAAGAAGAAAAACAACAAGAACTGTTTTTCTGAACCAGAGAAAAAACTACAAGGTTTTTGCCTCATCTTCACGCGATGAAGACAAAAATACCCCTCAACTTGATAATTACGACCTCATGGAACTCAAATTCGGTCGTTTACTTGGTGAAGACCCTAAGCTCACCCTTGCCAAGGTATTGGGAAGAAAGGCCAACCCTGATGCATCTTATCTTGATATTGAAAAATCATTTTATAAAAGAAAAAAGGGAAAAGTTGTGGAAATTGAGGAACTTCCATTTGAAGTTGAAAGACCTTGGGCAAAAAAATTACCTCCCAAACCCCAAGGATTGAAATCCAAATCTGATGATAGTGATAACAATGTTGAAATGGAGATTAAGAAACCTAATGAAGCCCTGCGGAAACCCGGGAATGTTAGAAAAAGTAATGTTCCTAATGTTATTTTGAGAAAGCCGTCTTTGTATAATGAGGACAAAGACGAGGATGAGGACGTGGACATGTCTTCGAGGTTGAGAATGAAACCAAATTTGTCTCTTAAAATGCAGAGTGGACAAGTGAAGGAGAAGTTTAGTGACATGACATTGTTGAGGAAGCCTGGATCGGTAATTGGTAAGAATGTTGAAAGTGAATTGAAGACGCGGAAAGAAGAGCCGAGTTATGAAGTTAGTAACTTGACCTTGTTGGAACAACCACACAGACCAGGTTGCAATAAAGAAGTAGAGAAGTCTGCAAAACCAAGTGATGAAGTTAGTAAATTGACCTTGTTAGAACAGCCACACCGGCCAAGTTGCAATAAAGAACTTGAGAAGTTTGCAGAGCCGAGTGATGAAGTCGAGAAGTTGACCTTGTTGGAACAGCCACACAGACCAAGTTCTAATAAAGAACTAGAAAAGTTTGCTGAGCCAAGTGATGAAGTCGCAAAATTAACCTTGTTGGAACAGCCACAAAGAGCAAGTAGCAAAGAAGAAGAGCAGTTTGGAGAGCCAAGTGATGAAGTCTCAAATTTGACCTTGTTGGAAAAGCCACAAAGTGCAAGTGACAAAGAAGAAGAAGAGCAGTTTGAAGAGCCAAGTGATGAAGTCGCAAACTTGACATTGTTGCAACAGCCACAAAGAGCAGGCGACAAAGTAGAAGAAGAGAAGTTTGGAGATGGATCAGAGCAACAGAAGCAGAAACAATCAGAGGTCCATCAGGAACTATTTGATTTAAATCAACCGTCTGATTTAAATTCAGTCGGTTCTAAGACTGAGTTGTCCGTAGAAGCTGCAATACAAGGAAAGCCAAAAAGATTAGATCCATATGAGAAACAAACCTCAAAAGCAGTTGGAGAAGAGACCGCTTCCCTTGATCCTGGAAGTCGTCGAAACAGTGATGAATCAGGAAATCTTGTTGATGTGTTAGATATTCAGGAAGGCGAAGATGCTGATTGGACCAAGGCAGAAGATTTGATTAAGACTGGAGATAGAGTTGATGTGGACGTAGTTTCTTTTGGTACCTTGGTAGGATTTCTGCCATACCGAAATCTTCTGTCAAAGTGGAAATTTTTAGCTTTTGAGTCATGGTTAAGACAGAAGGGCTTGGATCCATCAATGTACAAGCAAAACTTGGTCACTGTGACAAATTATGATGCTGAAAATAGTAATTTTTCTGCTGATTCACCTTCACATATGGAGAATGATGGTAAACTTGAAGATAAAATTTCACCAGATATGAAATTGGAAGATCTGTTAAAGATTTATGACCAAGAGAAAATCAAGTTCTTATCATCATTTATTGGACAGCAAATCAAAGCATACGTGTTACTATCAGACAGGAAATTGAAAAAGCTCATATTTTCACTAAGACCAAAAGAGAAGGAAGAACTAACTGAAAAGAAGAGAAATCTCATGGCTAGACTTCAAGTTGGTGATATTGTGAAATGCCGCATCCAAAAGATAACTTACTTTGGAATTTTTGTTGAGGTTGAAGGAGTTTCTGCACTAATTCATCAATCAGAAATATCGTGGGATTCCACGTTGGACCCATCTAATTATTTTAAGATTGATCAGGTTGTAGAGGCAAAAGTTCACCAGATAAACTCTGCTCTTGGGCGCATATTTTTATCATTAAAGGAGGTCACGTGTGATCCATTGATGAACTCCTTAGAGTCTGTAGTTGGAGACCATGAACCCTTTGATGGGAGATTGGAAGCAGCTCAAACAGATGTAGAGTGGTCTGAAGTCGAATCTCTTATAAAAGAATTGCAAAAAATTGAGGGCATCCAGTCAGTTTCAAAAGGCCGTTTTTTCAGGAGCCCTGGTTTAGCTCCCACATTTCAGGTTTATATGGCATCCATATTTGAGAATCAGTACAAGTTGCTTGCCCGATCAGAAAACAAAATACAAGAGTATAATTTAATCCTAATCAGTAATCATCTTGAGCAGGTGATGGTTCAAACGTCTTTGGATAAAGAAATGATGAAATCAATTATTATGACATGTGCAAATAGAGTAGAATAG

Protein sequence

>MsG0480023616.01.T01

MGSLPLTSKTSFLTTTAQFPFFSSSNNRRRKTTRTVFLNQRKNYKVFASSSRDEDKNTPQLDNYDLMELKFGRLLGEDPKLTLAKVLGRKANPDASYLDIEKSFYKRKKGKVVEIEELPFEVERPWAKKLPPKPQGLKSKSDDSDNNVEMEIKKPNEALRKPGNVRKSNVPNVILRKPSLYNEDKDEDEDVDMSSRLRMKPNLSLKMQSGQVKEKFSDMTLLRKPGSVIGKNVESELKTRKEEPSYEVSNLTLLEQPHRPGCNKEVEKSAKPSDEVSKLTLLEQPHRPSCNKELEKFAEPSDEVEKLTLLEQPHRPSSNKELEKFAEPSDEVAKLTLLEQPQRASSKEEEQFGEPSDEVSNLTLLEKPQSASDKEEEEQFEEPSDEVANLTLLQQPQRAGDKVEEEKFGDGSEQQKQKQSEVHQELFDLNQPSDLNSVGSKTELSVEAAIQGKPKRLDPYEKQTSKAVGEETASLDPGSRRNSDESGNLVDVLDIQEGEDADWTKAEDLIKTGDRVDVDVVSFGTLVGFLPYRNLLSKWKFLAFESWLRQKGLDPSMYKQNLVTVTNYDAENSNFSADSPSHMENDGKLEDKISPDMKLEDLLKIYDQEKIKFLSSFIGQQIKAYVLLSDRKLKKLIFSLRPKEKEELTEKKRNLMARLQVGDIVKCRIQKITYFGIFVEVEGVSALIHQSEISWDSTLDPSNYFKIDQVVEAKVHQINSALGRIFLSLKEVTCDPLMNSLESVVGDHEPFDGRLEAAQTDVEWSEVESLIKELQKIEGIQSVSKGRFFRSPGLAPTFQVYMASIFENQYKLLARSENKIQEYNLILISNHLEQVMVQTSLDKEMMKSIIMTCANRVE*